NEXUS
[File created by TreeBASE:  1/16/09  15:34:25]
[Matrix accession#: M3790]

BEGIN TAXA;
	TITLE M3790;
	DIMENSIONS  NTAX=11;
	TAXLABELS
		Pediculus_schaeffi	Pediculus_humanus_capitis_AY316833_KittlerEthiopia	Pediculus_humanus_capitis_AY316832_KittlerGermany	Pediculus_humanus_capitis_AY316831_KittlerGermany	Pediculus_humanus_capitis_AY316826_KittlerEthiopia1	Pediculus_humanus_capitis_AY316821_KittlerEthiopia2	Pediculus_humanus_capitis_AY316820_KittlerEthiopia1	Pediculus_humanus_capitis_AY316818_KittlerEthiopia	Pediculus_humanus_capitis_AY316817_KittlerEthiopia2	Pediculus_humanus_capitis_AY316815_KittlerEthiopia	Pediculus_humanus_humanus_AY316800_KittlerEthiopia
	;
END;

BEGIN CHARACTERS;
	TITLE M3790;
	DIMENSIONS NCHAR=536;
	FORMAT DATATYPE = DNA MISSING = ? GAP = - ;
	MATRIX
		Pediculus_schaeffi                                        GATGTTTACAAAATCGGTGGAATCGGTACTGTGCCTGTTGGACGAGTAGAAACTGGGGTTTTGAAACCCGGTATGGTTGTTACTTTTGCTCCAGCTAATTTAACTACTGAAGTTAAATCTGTTGAAATGCACCACGAAAACTTACAAGAAGCTGTGCCAGGCGATAATGTCGGTTTTAACGTTAAAAACGTTTCTGTAAAAGAATTGCGTCGTGGATACGTTGCCGGCGATGCTAAAAATAATCCACCAAAAGCTGCAGCTGATTTTCTTGCTCAGGTCATTGTGCTAAATCACCCTGGACAAATATCAAACGGATATACTCCCGTATTAGATTGTCATACGGCTCACATAGCCTGTAAATTTGCTGAAATCAAAGAGAAATGTGACCGTCGTACAGGAAAGACAACTGAAGAAAATCCCAAGAGCATTAAAACAGGAGATGCAGCCATTGTTAATTTGGTTCCATCTAAACCCATGTGTGTTGA---------------------------------------------------
		Pediculus_humanus_capitis_AY316833_KittlerEthiopia        GATGTATACAAAATTGGTGGTATCGGTACTGTGCCTGTTGGTAGAGTAGAAACTGGAGTTTTGAGACCTGGTATGGTCATTACTTTTGCTCCGATTAATTTAACTACTGAAGTTAAGTCTGTTGAAATGCACCACGAAAACTTGCAAGAAGCTGTGCCAGGAGATAACGTCGGTTTTAACGTCAAAAACGTTTCCGTAAAAGAATTGCGACGTGGATACGTTGTTGGTGACGCTAAAAATAATCCACCAAAAGCTGCAGCTGATTTCCTTGCTCAGGTCATTGTGCTAAATCACCCTGGACAAATATCAAACGGATATACTCCCGTATTAGATTGTCATACGGCTCACATAGCCTGTAAATTTGCTGAAATCAAAGAGAAATGTGACCGTCGTACAGGAAAAACAACCGAAGAAAATCCCAAGAGCATTAAAACAGGAGATGCAGCCATCGTTAACTTGGTTCCATCTAAATCCATGTGTGTTGA---------------------------------------------------
		Pediculus_humanus_capitis_AY316832_KittlerGermany         GATGTATACAAAATTGGTGGTATCGGTACTGTGCCTGTTGGTAGAGTAGAAACTGGAGTTTTGAGACCTGGTATGGTCATTACTTTTGCTCCGATTAATTTAACTACTGAAGTTAAGTCTGTTGAAATGCACCACGAAAACTTACAAGAAGCTGTGCCAGGAGATAACGTCGGTTTTAACGTCAAAAACGTTTCCGTAAAAGAATTGCGACGTGGATACGTTGTTGGTGACGCTAAAAATAATCCACCAAAAGCTGCAGCTGATTTCCTTGCTCAGGTCATTGTGCTAAATCACCCTGGACAAATATCAAACGGATATACTCCCGTATTAGATTGTCATACGGCTCACATAGCCTGTAAATTTGCTGAAATCAAAGAGAAATGTGACCGTCGTACAGGAAAAACAACCGAAGAAAATCCCAAGAGCATTAAAACAGGAGATGCAGCCATCGTTAACTTGGTTCCATCTAAATCCATGTGTGTTGA---------------------------------------------------
		Pediculus_humanus_capitis_AY316831_KittlerGermany         GACGTATACAAAATTGGTGGTATCGGTACTGTGCCTGTTGGTAGAGTAGAAACTGGAGTTTTGAGACCTGGTATGGTCATTACTTTTGCTCCGATTAATTTAACTACTGAAGTTAAGTCTGTTGAAATGCACCACGAAAACTTGCAAGAAGCTGTGCCAGGAGATAACGTCGGTTTTAACGTCAAAAACGTTTCCGTAAAAGAATTGCGACGTGGATACGTTGTTGGTGACGCTAAAAATAATCCACCAAAAGCTGCAGCTGATTTCCTTGCTCAGGTCATTGTGCTAAATCACCCTGGACAAATATCAAACGGATATACTCCCGTATTAGATTGTCATACGGCTCACATAGCCTGTAAATTTGCTGAAATCAAAGAGAAATGTGACCGTCGTACAGGAAAAACAACCGAAGAAAATCCCAAGAGCATTAAAACAGGAGATGCAGCCATCGTTAACTTGGTTCCATCTAAATCCATGTGTGTTGA---------------------------------------------------
		Pediculus_humanus_capitis_AY316826_KittlerEthiopia1       GATGTATACAAAATTGGTGGTATCGGTACTGTGCCTGTTGGTAGAGTAGAAACTGGAGTTTTGAGACCTGGTATGGTCATTACTTTTGCTCCGATTAATTTAACTACTGAAGTTAAGTCTGTCGAAATGCACCACGAAAACTTGCAAGAAGCTGTGCCAGGAGATAACGTCGGTTTTAACGTCAAAAACGTTTCCGTAAAAGAATTGCGACGTGGATACGTTGTTGGTGACGCTAAAAATAATCCACCAAAAGCTGCAGCTGATTTCCTTGCTCAGGTCATTGTGCTAAATCACCCTGGACAAATATCAAACGGATATACTCCCGTATTAGATTGTCATACGGCTCACATAGCCTGTAAATTTGCTGAAATCAAAGAGAAATGTGACCGTCGTACAGGAAAAACAACCGAAGAAAATCCCAAGAGCATTAAAACAGGAGATGCAGCCATCGTTAACTTGGTTCCATCTAAATCCATGTGTGTTGA---------------------------------------------------
		Pediculus_humanus_capitis_AY316821_KittlerEthiopia2       GATGTATACAAAATTGGTGGTATCGGTACTGTGCCTGTTGGTAGAGTAGAAACTGGAGTTTTGAGACCTGGTATGGTCATTACTTTTGCTCCGATTAATTTAACTACTGAAGTTAAGTCTGTCGAAATGCACCACGAAAACTTACAAGAAGCTGTGCCAGGAGATAACGTCGGTTTTAACGTCAAAAACGTTTCCGTAAAAGAATTGCGACGTGGATACGTTGTTGGTGACGCTAAAAATAATCCACCAAAAGCTGCAGCTGATTTCCTTGCTCAGGTCATTGTGCTAAATCACCCTGGACAAATATCAAACGGATATACTCCCGTATTAGATTGTCATACGGCTCACATAGCCTGTAAATTTGCTGAAATCAAAGAGAAATGTGACCGTCGTACAGGAAAAACAACCGAAGAAAATCCCAAGAGCATTAAAACAGGAGATGCAGCCATCGTTAACTTGGTTCCATCTAAATCCATGTGTGTTGA---------------------------------------------------
		Pediculus_humanus_capitis_AY316820_KittlerEthiopia1       GATGTATACAAAATTGGTGGTATCGGTACTGTGCCTGTTGGTAGAGTAGAAACTGGAGTTTTGAGACCTGGTATGGTCATTACTTTTGCTCCGATTAATTTAACTACTGAAGTTAAGTCTGTCGAAATGCACCACGAAAACTTACAAGAAGCTGTGCCAGGAGATAACGTCGGTTTTAACGTCAAAAACGTTTCCGTAAAAGAATTGCGACGTGGATACGTTGTTGGTGACGCTAAAAATAATCCACCAAAAGCTGCAGCTGATTTCCTTGCTCAGGTCATTGTGCTAAATCACCCTGGACAAATATCAAACGGATATACTCCCGTATTAGATTGTCATACGGCTCACATAGCCTGTAAATTTGCTGAAATCAAAGAGAAATGTGACCGTCGTACAGGAAAAACAACCGAAGAAAATCCCAAGAGCATTAAAACAGGAGATGCAGCCATCGTTAATTTGGTTCCATCTAAATCCATGTGTGTTGA---------------------------------------------------
		Pediculus_humanus_capitis_AY316818_KittlerEthiopia        GATGTATACAAAATTGGTGGTATCGGTACTGTGCCTGTTGGTAGAGTAGAAACTGGAGTTTTGAGACCTGGTATGGTCATTACTTTTGCTCCGATTAATTTAACTACTGAAGTTAAGTCTGTTGAAATGCACCACGAAAACTTGCAAGAAGCTGTGCCAGGAGATAACGTCGGTTTTAACGTCAAAAACGTTTCCGTAAAAGAATTGCGACGTGGATACGTTGTTGGTGACGCTAAAAATAATCCACCAAAAGCTGCAGCTGATTTCCTTGCTCAGGTCATTGTGCTAAATCACCCTGGACAAATATCAAACGGATATACTCCCGTATTAGATTGTCATACGGCTCACATAGCCTGTAAATTTGCTGAAATCAAAGAGAAATGTGACCGTCGTACAGGAAAAACAACCGAAGAAAATCCCAAGAGCATTAAAACAGGAGATGCAGCCATCGTTAATTTGGTTCCATCTAAATCCATGTGTGTTGA---------------------------------------------------
		Pediculus_humanus_capitis_AY316817_KittlerEthiopia2       GATGTATACAAAATTGGTGGTATCGGTACTGTGCCTGTTGGTAGAGTAGAAACTGGAGTTTTGAGACCTGGTATGGTCATTACTTTTGCTCCGATTAATTTAACTACTGAAGTTAAGTCTGTCGAAATGCACCACGAAAACTTGCAAGAAGCTGTGCCAGGAGATAACGTCGGTTTTAACGTCAAAAACGTTTCCGTAAAAGAATTGCGACGTGGATACGTTGTTGGTGACGCTAAAAATAATCCACCAAAAGCTGCAGCTGATTTCCTTGCTCAGGTCATTGTGCTAAATCACCCTGGACAAATATCAAACGGATATACTCCCGTATTAGATTGTCATACGGCTCACATAGCCTGTAAATTTGCTGAAATCAAAGAGAAATGTGACCGTCGTACAGGAAAAACAACCGAAGAAAATCCCAAGAGCATTAAAACAGGAGATGCAGCCATCGTTAATTTGGTTCCATCTAAATCCATGTGTGTTGA---------------------------------------------------
		Pediculus_humanus_capitis_AY316815_KittlerEthiopia        GATGTATACAAAATTGGTGGTATCGGTACTGTGCCTGTTGGTAGAGTAGAAACTGGAGTTTTGAGACCTGGTATGGTCATTACTTTTGCTCCGATTAATTTAACTACTGAAGTTAAGTCTGTTGAAATGCACCACGAAAACTTGCAAGAAGCTGTGCCAGGAGATAACGTCGGTTTTAACGTGAAAAACGTTTCCGTAAAAGAATTGCGACGTGGATACGTTGTTGGTGACGCTAAAAATAATCCACCAAAAGCTGCAGCTGATTTCCTTGCTCAGGTCATTGTGCTAAATCACCCTGGACAAATATCAAACGGATATACTCCCGTATTAGATTGTCATACGGCTCACATAGCCTGTAAATTTGCTGAAATCAAAGAGAAATGTGACCGTCGTACAGGAAAAACAACCGAAGAAAATCCCAAGAGCATTAAAACAGGAGATGCAGCCATCGTTAACTTGGTTCCATCTAAATCCATGTGTGTTGA---------------------------------------------------
		Pediculus_humanus_humanus_AY316800_KittlerEthiopia        GATGTATACAAAATTGGTGGTATCGGTACTGTGCCTGTTGGTAGAGTAGAAACTGGAGTTTTGAGACCTGGTATGGTCATTACTTTTGCTCCGATTAATTTAACTACTGAAGTTAAGTCTGTTGAAATGCACCACGAAAACTTGCAAGAAGCTGTGCCAGGAGATAACGTCGGTTTTAACGTCAAAAACGTTTCCGTAAAAGAATTGCGACGTGGATACGTTGTTGGTGACGCTAAAAATAATCCACCAAAAGCTGCAGCTGATTTCCTTGCTCAGGTCATTGTGCTAAATCACCCTGGACAAATATCAAACGGATATACTCCCGTATTAGATTGTCATACGGCTCACATAGCCTGTAAATTTGCTGAAATCAAAGAGAAATGTGACCGTCGTACAGGAAAAACAACCGAAGAAAATCCCAAGAGCATTAAAACAGGAGACGCAGCCATCGTTAACTTGGTTCCATCTAAATCCATGTGTGTTGA---------------------------------------------------
	;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions = 
 N: 1 - 536 ; 
 CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;