NEXUS
[File created by TreeBASE:  1/16/09  15:35:05]
[Matrix accession#: M3850]

BEGIN TAXA;
	TITLE M3850;
	DIMENSIONS  NTAX=23;
	TAXLABELS
		Aristolochia_saccata_Asa_homo	Aristolochia_westlandii_SETS36_allele1	Aristolochia_westlandii_SETS36_allele2	Aristolochia_moupinensis_Mou2_allele2	Aristolochia_kaempferi_K158_allele1	Aristolochia_shimadai_Setu2allele1_AC2allele1	Aristolochia_shimadai_K282_allele2	Aristolochia_shimadai_K282_allele1	Aristolochia_shimadai_AS2_allele1	Aristolochia_shimadai_AS2_allele2	Aristolochia_liukiuensis_K32_allele1	Aristolochia_liukiuensis_K32_allele2	Aristolochia_cucurbitifolia_AC2_allele2	Aristolochia_mollissima_AM2_allele2	Aristolochia_moupinensis_Mou2_allele1	Aristolochia_manshuriensis_SEST21_allele2	Aristolochia_manshuriensis_SEST21_allele1	Aristolochia_kaempferi_K642homo_K160homo	Aristolochia_tanzawana_K95homo_K555homo_K653homo	Aristolochia_K580homo_K325homo_K61_1_Setu2_2_AM2_1	Aristolochia_kaempferi_K61allele2_K437allele2	Aristolochia_shimadai_K437_allele1	Aristolochia_kaempferi_K158_allele2
	;
END;

BEGIN CHARACTERS;
	TITLE M3850;
	DIMENSIONS NCHAR=259;
	FORMAT DATATYPE = DNA MISSING = ? GAP = - ;
	MATRIX
		Aristolochia_saccata_Asa_homo                            GTATGCCCTTTCTTTTTCATAATAAACTGATTAAACTCTCTTTATCTCTTGAACTGATGATGGTTTCACTGCTGTTATGGTGATCTAAACTGTTCA--CTGTGGTCACTGATAGTGGGATATGGTCGTCACAATGCTTCTGAGCTTGGGCATTTTCCATATTCAGTT---------CCCAAAGAAATGAACCAGGAATATTAACAAGGTTTCTACTTGTGATTTGTATATTAAACTACACAAGTTTTCCATTTTGACAG
		Aristolochia_westlandii_SETS36_allele1                   GTATGCCCTTTCTTTTTCATAATAAACTGATTGAACTCCCTTTATCTCTTGAACTGATGATGGTTTCACTGCTGTTATGGTGATCTAAACTGTTCATTCTGTGGTCACTGATAGTGGGATATGGTCTTCAAAATGCTTCTGAGCTTGGGCATTTTCCATATTCAGTTT--------CCCAAAGAAATGAACCAGTAATATTAACAAGGTTTCTACTTGTGATTCGTATATTAAACCACACAAGTTTTCCATTTTGACAG
		Aristolochia_westlandii_SETS36_allele2                   GTATGCCCTTTCTTTTTCATAATAAACTGATTGAACTCTCTTTATCTCTTGAACTGATGATGGTTTCACTGCTGTTATGGTGATCTAAACTGTTCATTCTGTGGTCACTGATAGTGGGATATGGTCTTCAAAATACTTCTGAGCTTGGGCATTTTCCATATTCAGTTTTT-AAGTTCCCAAACAAATGAACCAGTAATATTAACAAGGTTTCTACTTGTGATTCGTATATTAAACCACACAAGTTTTCCATTTTGACAG
		Aristolochia_moupinensis_Mou2_allele2                    GTATGCCCTTTCTTTTTCATAATAAACTGATTAAACTCTCTTTATCTCTTGAACTGATGATGGTTTCACTGCTGTTATGGTGATCTAAACTGTTCATTCTGTGGTCACTGATAGTGGGATATGGTCTTCACAATGCTTCTGAGCTTGGGCATTTTCCATATTCAGTT---------CCCAAAGAAATGAACCAGTAATATTAACAAGGTTTCTACTTGTGATTTGTATATTAAACTACACAAGTTTTCCATTTTGACAG
		Aristolochia_kaempferi_K158_allele1                      GTATGCCCTTTCTTTTTCATAATAAACTGATTAAACTCTTTTTATCTCTTGAACTGATGATGGTTTCACTGCTGTTATGGTGATCTAAACTGTTCATTCTGTGATCACTGATAGTGGGGCATGGTCTTTACAATGCCTCTGAGCTTGGGCATTTTCCATATTCAGTTTTT-AAGTTCCCAAAGAAATGAACCAGTAATATTAACAAGGTTTCTACTTGTGATTTGTATATTAAACTACACAAGTTTTCTATTTTGACAG
		Aristolochia_shimadai_Setu2allele1_AC2allele1            GTATGCCCTTTCTTTTTCATAATAAACTGATTAAACTCTTTTTATCTCTTGAACTGATGATGGTTTCACTGCTGTTATGGTGATCTAAACTGTTCATTCTGTGGTCACTGATAGTGGGATATGGTTTTTACAATGCCTCTGAGCTTGGGCATTTTCCATATTCAGTTTTT-AAGTTCCCAAAGAAATGAACCAGTAATATTAACAAGGTTTATACTTGTGATTTGTATATTAAACTACACAAGTTTTCTATTTTGACAG
		Aristolochia_shimadai_K282_allele2                       GTATGCCCTTTCTTTTTCATAATAAACTGATTAAACTCTCTTCATCTCTTGAACTGATAATGGTTTCACTGCTGTTATGGTGATCTAAACTGTTCATTCTGTGGTCACTGATAGTGGGATATGGTCTTTACAATGCTTCTGAGCTTGGGCATTTTCCATATTCAGTTTTT-AAGTTCCCAAAGAAATGAACCAGTAATATTAACAAGGTTTATACTTGTGATTTGTATATTAAACTACACAAGTTTTCTATTTTGACAG
		Aristolochia_shimadai_K282_allele1                       GTATGCCCTTTCTTTTTCATAATAAACTGATTAAACTCTCTTCATCTCTTGAACTGATAATGGTTTCACTGCTGTTATGGTGATCTAAATTGTTCATTCTGTGGTCACTGATAGTGGGATATGGTCTTTACAATGCTTCTGAGCTTGGGCATTTTCCATATTCAGTTTTT-AAGTTCCCAAAGAAATGAACCAGTAATATTAACAAGGTTTATACTTGTGATTTGTATATAAAACTACACAAGTTTTCTATTTTGACAG
		Aristolochia_shimadai_AS2_allele1                        GTATGCCCTTTCTTTTTCATAATAAACTGATTAAACTCTTTTTATCTCTTGAACTGATGATGGTTTCACTGCTGTTATTGTGATCTAAACTGTTCATTCTGTGGTCACTGATAGTGGGATATGGTCTTTACAATGCCTCTGAGCTTGGGCATTTTCCATATTCAGTTTTT-AAGTTCCCAAAGAAATGAACCAGTAATATTAACAAGGTTTATACTTGTGATTTGTATATTAAACTACACAAGTTTTCTATTTTGACAG
		Aristolochia_shimadai_AS2_allele2                        GTATGCCCTTTCTTTTTCATAATAAACTGATTAAACTCTTTTTATTACTTGAACTGATGATGGTTTCACTGCTGTTATGGTGATCTAAACTGTTCATTCTGTGGTCACTGATAGTGGGATATGGTTTTTACAATGCCTCTGAGCTTGGGCATTTTCCATATTCAGTTTTT-AAATTCCCAAAGAAATGAACCAGTAATATTAACAAGGTTTATACTTGTGATTTGTATATTAAACTACACAAGTTTTCTATTTTGACAG
		Aristolochia_liukiuensis_K32_allele1                     GTATGCCCTTTCTTTTTCATAATAAACTGATTAAACTCTCTTTATCTCTTGAACAGATGATGGTTTCACTGCTGTTATGGTGATCCAAACTGTTCATTCTGTGGTCACTGATAGTGGGATATGGTTTTTACAATGCCTCTGAGCTTGGGCATTTTCCATATTCAGTTTTT-AAGTTCCCAAAGAAATGAACCAGTTATATTAACAAGGTTTCTACTTGTGATTTGTATATTAAACCACACAAGTTTTCTATTTTGACAG
		Aristolochia_liukiuensis_K32_allele2                     GTATGCCCTTACTTTTTCATAATAAACTGATTAAACTCTCTTTATCTCTTGAACAGATGATGGTTTCACTGCTGTTATGGTGATCTAAACTGTTCATTCTGTGGTCACTGATAGTGGGATATGGTTTTTACAATGCCTCTGAGCTTGGGCATTTTCCATATTCAGTTTTT-AAATTCCCAAAGAAATGAACCAGTAATATTAACAAGGTTTATACTTGTGATTTGTATATTAAACTACACAAGTTTTCTATTTTGACAG
		Aristolochia_cucurbitifolia_AC2_allele2                  GTATGCCCTTTCTTTTTCATAATAAACTGATTAAACTCTCTTTATCTCTTGAACAGATGATGGTTTCACTGCTGTTATGGTGATCTAAACTGTTCATTCTGTGGTCACTGATAGTGGGATATGGTTTTTACAATGCCTCTGAGCTTGGGCATTTTCCATATTCAGTTTTT-AAGTTCCCAAAGAAATGAACCAGTAATATTAACAAGGTTTATACTTGTGATTTGTATATTAAACTACACAAGTTTTCTATTTTGACAG
		Aristolochia_mollissima_AM2_allele2                      GTATGCCCTTTCTTTTTCATAATAAACTGATTAAACTCTTTTTATCTCTTGAACTGATGATGGTTTCACTGCTGTTATGGTGATCTAAACTGTTCATTCTGTGGTCACTGATAGTGGGATATGGTTTTTACAATGCCTCTGAGCTTGGGCATTTTCCATATTCAGTTTTT-AAGTTCCCAAAGAAATGAACCAGTTATATTAACAAGGTTTCTACTTGTGACTTGTATATTAAACCACACAAGTTTTCTATTTTGACAG
		Aristolochia_moupinensis_Mou2_allele1                    GTATGCCCTTTCTTTTTCATAATAAACTGATTAAACTCTCTTTATCTCTTGAACTGATGATGGTTTCACTGCTGTTATGGTGATCTAAACTGTTCATTCTGTGGTCACTGATAGTGGGATATGGTCTTCACAATGCTTCTGAGCTTGGGCATTTTCCATATTCAGTT---------CCCAAAGAAATGAACTAGTAATATTAACAAGGTTTCTACTTGTGATTTGTATATTAAACTACACAAGTTTTCCATTTTGACAG
		Aristolochia_manshuriensis_SEST21_allele2                GTATGCTCTTTCTTTTTCATAATAAACTGATTAAACTTTCCTTATCTCTTAAACTGATGATGGTTTCACTGCTGTTATGGTGATCTAAACTCTCCATTCTGTGGTCACTGATAGTGGGATATGGTCTTCAAAATGCTTCTGAGCTTGGGCCTGTTCCACATTCAGTTTTTTAAGTTCCCAAAGAAATGAACCAGTGATATTAACAAGGTTTCTACTTGTGATTTGTATATTAAACTACACAAGTTTTCCATTTTGACAG
		Aristolochia_manshuriensis_SEST21_allele1                GTATGCTCTTTCTTTTTCATAATAAACTGATTAAACTTTCCTTATCTCTTAAACTGATGATGGTTTCACTGCTGTTATGGTGATCTAAACTGTCCATTCTGTGGTCACTGATAGTGGGATATGGTCTTCAAAATGCTTCTGAGCTTGGGCCTGTTCCACATTCAGTTTTTTAAGTTCCCAAAGAAATGAACCAGTGATATTAACAAGGTTTCTACTTGTGATTTGTATATTAAACTACACAAGTTTTCCATTTTGACAG
		Aristolochia_kaempferi_K642homo_K160homo                 GTATGCCATTTCTTTTTCATAATAAACTGATTAAACTCTCTTTATCTCTTGAACAGATGATGGTTTCACTGCTGTTATGGTGATCCAAACTGTTCATTCTGTGGTCACTGATAGTGGGATATGGTCTTTACAATGCCTCTGAGCTTGGGCATTTTCCATATTCAGTTTTT-AAGTTCCCAAAGAAATGAACCAGTAATATTAACAAGGTTTATACTTGTGATTTGTATATTAAACTACACAAGTTTTCTATTTTGACAG
		Aristolochia_tanzawana_K95homo_K555homo_K653homo         GTATGCCCTTTCTTTTTCATAATAAACTGATTAAACTCTTTTTATCTCTTGAACTGATGATGGTTTCACTGCTGTTATGGTGATCTAAACTGTTCATTCTGTGGTCACTGATAGTGGGATATGGTCTTTACAATGCCTCTGAGCTTGGGCATTTTCCATATTCAGTTTT--AAGTTCCCACAGAAATGAACCAGTAATATTAACAAGGTTTATACTTGTGATTTGTATATTAAACTACACAAGTTTTCTATTTTGACAG
		Aristolochia_K580homo_K325homo_K61_1_Setu2_2_AM2_1       GTATGCCCTTTCTTTTTCATAATAAACTGATTAAACTCTTTTTATCTCTTGAACTGATGATGGTTTCACTGCTGTTATGGTGATCTAAACTGTTCATTCTGTGGTCACTGATAGTGGGATATGGTCTTTACAATGCCTCTGAGCTTGGGCATTTTCCATATTCAGTTTTT-AAGTTCCCAAAGAAATGAACCAGTAATATTAACAAGGTTTATACTTGTGATTTGTATATTAAACTACACAAGTTTTCTATTTTGACAG
		Aristolochia_kaempferi_K61allele2_K437allele2            GTATGCCCTTTCTTTTTCATAATAAACTGATTAAACTCTTTTTATCTCTTGAACTGATGATGGTTTCACTGCTGTTATGGTGATCTAAACTGTTCATTCTGTGGTCACTGATAGTGGGATATGGTCTTTACATTGCCTCTGAGCTTGGGCATTTTCCATATTCAGTTTTT-AAGTTCCCAAAGAAATGAACCAGTAATATTAACAAGGTTTATACTTGTGATTTGTATATTAAACTACACAAGTTTTCTATTTTGACAG
		Aristolochia_shimadai_K437_allele1                       GTATGCCCTTTCTTTTTCATAATAAACTGATTAAACTCTTTTTATCTCTTGAACTGATGATGGTTTCACTGCTGTTATGGTGATCTAAACTGTTCATTCTGTGGTCACTGATAGTGGGATATGGTTTTTACAATGCCTCTGAGCTTGGGCATTTTCCATATTCAGTTTT--AAGTTCCCACAGAAATGAACCAGTAATATTAACAAGGTTTATACTTGTGATTTGTATATTAAACTACACAAGTTTTCTATTTTGACAG
		Aristolochia_kaempferi_K158_allele2                      GTATGCCCTTTCTTTTTCATAATAAACTGATTAAACTCTTTTTATCTCTTGAACTGATGATGGTTTCACTGCTGTTATGGTGATCTAAACTGTTCATTCTGTGGTCACTGATAGTGGGATATGGTCTTTACAATGCTTCTGAGCTTGGGCATTTTCCATATTCAGTTTTT-AAGTTTCCAAAGAAATGAACCAGTAATATTAACAAGGTTTCTACATGTGATTTGTATATTAAACTACATAAGTTTTCCATTTTGACAG
	;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions = 
 N: 1 - 259 ; 
 CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;