#NEXUS
[written Fri Mar 03 11:03:27 CST 2017 by Mesquite  version 3.2 (build 801) at peery790/144.92.199.20]

BEGIN TAXA;
	TITLE Taxa;
	DIMENSIONS NTAX=12;
	TAXLABELS
		Bradypus_variegatus_CR Bradypus_pygmaeus_PA Bradypus_variegatus_CO Bradypus_variegatus_PE Bradypus_variegatus_BR Bradypus_tridactylus_BR Bradypus_tridactylus_FG Bradypus_torquatus Choloepus_hoffmanni_CR Choloepus_hoffmanni_PA Choloepus_didactylus_FG Choloepus_didactylus_BR 
	;

END;


BEGIN TREES;
	Title 'Trees from "sloth-phylogeny.nexus"';
	ID 015a950b9dfd1;
	LINK Taxa = Taxa;
	TRANSLATE
[0] 		1 Bradypus_variegatus_CR,
[1] 		2 Bradypus_pygmaeus_PA,
[2] 		3 Bradypus_variegatus_CO,
[3] 		4 Bradypus_variegatus_PE,
[4] 		5 Bradypus_variegatus_BR,
[5] 		6 Bradypus_tridactylus_BR,
[6] 		7 Bradypus_tridactylus_FG,
[7] 		8 Bradypus_torquatus,
[8] 		9 Choloepus_hoffmanni_CR,
[9] 		10 Choloepus_hoffmanni_PA,
[10] 		11 Choloepus_didactylus_FG,
[11] 		12 Choloepus_didactylus_BR;
	TREE sloth = (((9:0.002495,10:0.001807):0.020274,(11:0.003996,12:0.007211):0.012929):0.109703,(((1:0.011224,2:0.010894):0.029225,(3:0.013782,(((7:0.001319,6:0.001326):0.002602,5:0.003679):0.002807,4:0.00648):0.007163):0.0294):0.056189,8:0.107797):0.027711);

END;


begin figtree;
	set appearance.backgroundColorAttribute = " Default ";
	set appearance.backgroundColour = # - 1;
	set appearance.branchColorAttribute = " User selection ";
	set appearance.branchLineWidth = 1.0;
	set appearance.branchMinLineWidth = 0.0;
	set appearance.branchWidthAttribute = " Fixed ";
	set appearance.foregroundColour = # -16777216;
	set appearance.selectionColour = # -2144520576;
	set branchLabels.colorAttribute = " User selection ";
	set branchLabels.displayAttribute = " Branch times ";
	set branchLabels.fontName = " Times New Roman ";
	set branchLabels.fontSize = 10;
	set branchLabels.fontStyle = 0;
	set branchLabels.isShown = false;
	set branchLabels.significantDigits = 4;
	set layout.expansion = 0;
	set layout.layoutType = " RECTILINEAR ";
	set layout.zoom = 0;
	set legend.attribute = null;
	set legend.fontSize = 10.0;
	set legend.isShown = false;
	set legend.significantDigits = 4;
	set nodeBars.barWidth = 4.0;
	set nodeBars.displayAttribute = null;
	set nodeBars.isShown = false;
	set nodeLabels.colorAttribute = " User selection ";
	set nodeLabels.displayAttribute = " Node ages ";
	set nodeLabels.fontName = " Times New Roman ";
	set nodeLabels.fontSize = 10;
	set nodeLabels.fontStyle = 0;
	set nodeLabels.isShown = false;
	set nodeLabels.significantDigits = 4;
	set nodeShape.colourAttribute = null;
	set nodeShape.isShown = false;
	set nodeShape.minSize = 10.0;
	set nodeShape.scaleType = Width;
	set nodeShape.shapeType = Circle;
	set nodeShape.size = 4.0;
	set nodeShape.sizeAttribute = null;
	set polarLayout.alignTipLabels = false;
	set polarLayout.angularRange = 0;
	set polarLayout.rootAngle = 0;
	set polarLayout.rootLength = 100;
	set polarLayout.showRoot = true;
	set radialLayout.spread = 0.0;
	set rectilinearLayout.alignTipLabels = false;
	set rectilinearLayout.curvature = 0;
	set rectilinearLayout.rootLength = 100;
	set scale.offsetAge = 0.0;
	set scale.rootAge = 1.0;
	set scale.scaleFactor = 1.0;
	set scale.scaleRoot = false;
	set scaleAxis.automaticScale = true;
	set scaleAxis.fontSize = 8.0;
	set scaleAxis.isShown = false;
	set scaleAxis.lineWidth = 1.0;
	set scaleAxis.majorTicks = 1.0;
	set scaleAxis.origin = 0.0;
	set scaleAxis.reverseAxis = false;
	set scaleAxis.showGrid = true;
	set scaleBar.automaticScale = true;
	set scaleBar.fontSize = 10.0;
	set scaleBar.isShown = true;
	set scaleBar.lineWidth = 1.0;
	set scaleBar.scaleRange = 0.0;
	set tipLabels.colorAttribute = " User selection ";
	set tipLabels.displayAttribute = " Names ";
	set tipLabels.fontName = " Times New Roman ";
	set tipLabels.fontSize = 12;
	set tipLabels.fontStyle = 0;
	set tipLabels.isShown = true;
	set tipLabels.significantDigits = 4;
	set trees.order = false;
	set trees.orderType = " increasing ";
	set trees.rooting = false;
	set trees.rootingType = " User Selection ";
	set trees.transform = false;
	set trees.transformType = " cladogram ";

END;
Begin MESQUITE;
		MESQUITESCRIPTVERSION 2;
		TITLE AUTO;
		tell ProjectCoordinator;
		timeSaved 1488560607112;
		getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa;
		tell It;
			setID 0 4007948670956930544;
		endTell;
		getWindow;
		tell It;
			suppress;
			setResourcesState false false 100;
			setPopoutState 300;
			setExplanationSize 0;
			setAnnotationSize 0;
			setFontIncAnnot 0;
			setFontIncExp 0;
			setSize 1600 782;
			setLocation -8 0;
			setFont SanSerif;
			setFontSize 10;
			getToolPalette;
			tell It;
			endTell;
			desuppress;
		endTell;
		getEmployee  #mesquite.minimal.ManageTaxa.ManageTaxa;
		tell It;
			showTaxa #4007948670956930544 #mesquite.lists.TaxonList.TaxonList;
			tell It;
				setTaxa #4007948670956930544;
				getWindow;
				tell It;
					newAssistant  #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition;
					setExplanationSize 30;
					setAnnotationSize 20;
					setFontIncAnnot 0;
					setFontIncExp 0;
					setSize 1500 710;
					setLocation -8 0;
					setFont SanSerif;
					setFontSize 10;
					getToolPalette;
					tell It;
						setTool mesquite.lists.TaxonList.TaxonListWindow.arrow;
					endTell;
				endTell;
				showWindow;
				getEmployee #mesquite.lists.ColorTaxon.ColorTaxon;
				tell It;
					setColor Red;
					removeColor off;
				endTell;
				getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel;
				tell It;
					togglePanel off;
				endTell;
			endTell;
		endTell;
		getEmployee  #mesquite.trees.ManageTrees.ManageTrees;
		tell It;
			showTrees 0 #mesquite.lists.TreesList.TreesList;
			tell It;
				setTreeBlock 1;
				getWindow;
				tell It;
					newAssistant  #mesquite.lists.NumForTreeList.NumForTreeList;
				tell It;
					suppress;
					setValueTask  #mesquite.trees.NumberOfTaxa.NumberOfTaxa;
					desuppress;
				endTell;
					newAssistant  #mesquite.lists.TreeListRooted.TreeListRooted;
					newAssistant  #mesquite.lists.TreeListPolys.TreeListPolys;
					newAssistant  #mesquite.lists.TreeListPolyAssumption.TreeListPolyAssumption;
					setExplanationSize 30;
					setAnnotationSize 20;
					setFontIncAnnot 0;
					setFontIncExp 0;
					setSize 1500 710;
					setLocation -8 0;
					setFont SanSerif;
					setFontSize 10;
					getToolPalette;
					tell It;
						setTool mesquite.lists.TreesList.TreesListWindow.ibeam;
					endTell;
					setActive;
				endTell;
				showWindow;
			endTell;
		endTell;
		getEmployee  #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord;
		tell It;
			makeTreeWindow #4007948670956930544  #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker;
			tell It;
				suppressEPCResponse;
				setTreeSource  #mesquite.trees.StoredTrees.StoredTrees;
				tell It;
					setTreeBlock 1;
					setTreeBlockID 015a950b9dfd1;
					toggleUseWeights off;
				endTell;
				setAssignedID 1011.1488560380144.129085527917643671;
				getTreeWindow;
				tell It;
					setExplanationSize 30;
					setAnnotationSize 20;
					setFontIncAnnot 0;
					setFontIncExp 0;
					setSize 1500 710;
					setLocation -8 0;
					setFont SanSerif;
					setFontSize 10;
					getToolPalette;
					tell It;
						setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.interchange;
					endTell;
					getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator;
				tell It;
					suppress;
					setTreeDrawer  #mesquite.trees.SquareLineTree.SquareLineTree;
					tell It;
						setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard;
						tell It;
							branchLengthsToggle off;
							toggleScale on;
							toggleBroadScale off;
							toggleCenter on;
							toggleEven on;
							setFixedTaxonDistance 0;
						endTell;
						setEdgeWidth 4;
						showEdgeLines on;
						orientRight;
					endTell;
					setBackground White;
					setBranchColor Black;
					showNodeNumbers off;
					showBranchColors on;
					labelBranchLengths off;
					centerBrLenLabels on;
					showBrLensUnspecified on;
					showBrLenLabelsOnTerminals on;
					setBrLenLabelColor 0 0 255;
					setNumBrLenDecimals 6;
					desuppress;
					getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames;
					tell It;
						setColor Black;
						toggleColorPartition off;
						toggleColorAssigned on;
						toggleShadePartition off;
						toggleShowFootnotes on;
						toggleNodeLabels on;
						toggleCenterNodeNames off;
						toggleShowNames on;
						namesAngle ?;
					endTell;
				endTell;
					setTreeNumber 1;
					setDrawingSizeMode 0;
					toggleLegendFloat on;
					scale 0;
					toggleTextOnTree off;
					togglePrintName on;
					showWindow;
				endTell;
				desuppressEPCResponse;
				getEmployee #mesquite.trees.ColorBranches.ColorBranches;
				tell It;
					setColor Red;
					removeColor off;
				endTell;
				getEmployee #mesquite.ornamental.BranchNotes.BranchNotes;
				tell It;
					setAlwaysOn off;
				endTell;
				getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition;
				tell It;
					colorByPartition off;
				endTell;
				getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles;
				tell It;
					setOn on;
					setDigits 4;
					writeAsPercentage off;
					toggleCentred off;
					toggleHorizontal on;
					toggleWhiteEdges on;
					toggleShowOnTerminals on;
					setFontSize 10;
					setOffset 0  0;
				endTell;
				getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings;
				tell It;
					setOn on;
					toggleCentred on;
					toggleHorizontal on;
					setFontSize 10;
					setOffset 0  0;
					toggleShowOnTerminals on;
				endTell;
				getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues;
				tell It;
					panelOpen false;
				endTell;
			endTell;
		endTell;
		endTell;
end;