#NEXUS [written Wed Mar 08 16:16:51 AEDT 2017 by Mesquite version 3.04 (build 725) at tacuazin-bp/152.83.114.173] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=24; TAXLABELS Endocarpon_pulvinatum_BMC15912 Endocarpon_pulvinatum_BMC18884 Endocarpon_pulvinatum_BMC20686 Endocarpon_pulvinatum_BMC26544 Endocarpon_pulvinatum_BMC27176B Endocarpon_pulvinatum_BMC27947 Endocarpon_pulvinatum_BMC29161 Endocarpon_pulvinatum_BMC32483 Endocarpon_pulvinatum_RR3686 Endocarpon_pulvinatum_SH314 Endocarpon_pulvinatum_SH347 Endocarpon_tortuosum_BMC12394 Staurothele_areolata_SH154 Staurothele_areolata_SH206 Staurothele_areolata_SH268 Staurothele_clopima_SS087 Staurothele_dendritica_WB13227A Staurothele_dendritica_WB13227B Staurothele_drummondii_CG831 Staurothele_frustulenta_AA53935 Staurothele_fissa_CG586 Staurothele_fissa_SH260 Staurothele_fissa_SH194 Staurothele_fissa_SH248 ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=543; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Endocarpon_pulvinatum_BMC15912 ATTACCGAGTTAGGGTCCTCGGGGCCCGACCTCCAACCCTTGCCTATCTTACCACGTTGCTTCGGCGGGCCCG-CCCTGATCGGGCCGTCGGGGATGTTCGTCCCCGGCCC-GCGCCCGTCGAGAGCCAAAAATCCCTCCAACAGTGACGTCTGAGTCCTAGAT-AAATAA--AGTATAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGCGAATTGCAGAATTCCGTGAGTCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCGAAGGGCATGCCTGTTCGAGCGTCATTATCAACCCTCAAGCCCGGCTTGGCCGTTGGGTCCCGCACCGTGGAGACCACGGTGGGCCCGAAAGATAATGGCAGAGCC-CGTGTGGACCCCTGGATGCAGCGAGCTTCT--GGCACGCGTCCGTCCGGT--CCTCCCGGCTCGGTCTCACCCGAAATTCTTTCTCCGGTTGACCTCGGATCAGG?AGGGATACCCGCTGAACTTAA Endocarpon_pulvinatum_BMC18884 ATTACCGAGTTAGGGTCCTCTGGGCCCGACCTCCAACCCTTGCCTATCTTACCACGTTGCTTCGGCGGGCCCG-CCCTGATCGGGCCGCCGGGGATGTTCGTCCCCGGCCC-GCGCCCGTCGAGAGCCAAA-TTCCTTCCAACAGTGACGTCTGAGTCCTAGAT-AAATAA--AGTATAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGCGAATTGCAGAATTCCGTGAGTCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCGAAGGGCATGCCTGTTCGAGCGTCATTATCAACCCTCAAGCCCGGCTTGGCCGTTGGGTCCCGCACCGTGGAGACCACGGTGGGCCCGAAAGATAATGGCAGAGCC-CGTGTGGACCCCTGGATGCAGCGAGCTTCT--GGCACGCGTCCGTCCGGT--CCTCCCGGCTCGGTCTCACCCGAAATTCTTTCTCAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAA Endocarpon_pulvinatum_BMC20686 ATTACCGAGTTAGGGTCCCCTGGGCCCGACCTCCAACCCTTGCCTACCTTACCACGTTGCTTCGGCGGGCCCG-CCCTGATCGGGCCGCCGGGGATGTTCGTCCCCGGCCC-GCGCCCGTCGAGAGCCAAA-ATCCTTCCAACAGTGACGTCTGAGTCCTAGAT-AAATA?--AGCATAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGCGAATTGCAGAATTCCGTGAGTCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTATCAACCCTCAAGCCCGGCTTGGCCGTTGGGTCCCGCACCGTGGAGACCACGGTGGGCCCGAAAGATAATGGCAGAGCC-CGTGTGGACCCCTGGATGCAGCGAGCTTCT--GGCACGCGTCCGTCCGGT--CCTCCCGGCTCGGTCTCACCCGAAATTCTTTCTCAGGTTGACCTC?????????????????????????????? Endocarpon_pulvinatum_BMC26544 ATTACCGAGTTAGGGTCCTCTGGGCCCGACCTCCAACCCTTGCCTATCTTACCACGTTGCTTCGGCGGGCCCG-CCCTGATCGGGCCGCCGAGGATGTTCGTCCCCGGCCC-GCGCCCGTCGAGAGCCAAA-TTCCTTCCAACAGTGACGTCTGAGTCCTAGAT-AAATAA--AGTATAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGCGAATTGCAGAATTCCGTGAGTCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTATCAACCCTCAAGCCCGGCTTGGCCGTTGGGTCCCGCACCGTGGAGACCACGGTGGGCCCGAAAGATAATGGCAGAGCC-CGTGTGGACCCCTGGATGCAGCGAGCTTCT--GGCACGCGTCCGTCCGGT--CCTCCCGGCTCGGTCTCACCCGAAATTCTTTCTCAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAA Endocarpon_pulvinatum_BMC27176B ATTACCGAGTTAGGGTCCCCTGGGCCCGACCTCCAACCCTTGCCTACCTTACCACGTTGCTTCGGCGGGCCCG-CCCTGATCGGGCCGCCGGGGATGTTCGTCCCCGGCCC-GCGCCCGTCGAGAGCCAAA-ATCCTTCCAACAGTGACGTCTGAGTCCTAGAT-AAATAA--AGCATAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGCGAATTGCAGAATTCCGTGAGTCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTATCAACCCTCAAGCCCGGCTTGGCCGTTGGGTCCCGCACCGTGGAGACCACGGTGGGCCCGAAAGATAATGGCAGAGCC-CGTGTGGACCCCTGGATGCAGCGAGCTTCT--GGCACGCGTCCGTCCGGT--CCTCCCGGCTCGGTCTCACCCGAAATTCTTTCTCAGGTTGACCTCGGATCAAGTAGGGATACCCGCTGAACTTAA Endocarpon_pulvinatum_BMC27947 ATTACCGAGTTAGGGTCCTCTGGGCCCGACCTCCAACCCTTGCCTATCTTACCACGTTGCTTCGGCGGGCCCG----------------------------------------CGCCCGTCGAGAGCCAAA-TTCCTTCCAACAGTGACGTCTGAGTCCTAGAT-AAATAA--AGTATAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGCGAATTGCAGAATTCCGTGAGTCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCGAAGGGCATGCCTGTTCGAGCGTCATTATCAACCCTCAAGCCCGGCTTGGCCGTTGGGTCCCGCACCGTGGAGACCACGGTGGGCCCGAAAGATAATGGCAGAGCC-CGTGTGGACCCCTGGATGCAGCGAGCTTCT--GGCACGCGTCCGTCCGGT--CCTCCCGGCTCGGTCTCACCCGAAATTCTTTCTCA???????????????????????????????????????? Endocarpon_pulvinatum_BMC29161 ATTACCGAGTTAGGGTCCTCTGGGCCCGACCTCCAACCCTTGCCTATCTTACCACGTTGCTTCGGCGGGCCCG-CCCTGATCGGGCCGCCGGGGATGTTCGTCCCCGGCCC-GCGCCCGTCGAGAGCCAAA-ATCCTTCCAACAGTGACGTCTGAGTCCTAGAT-----AA--AGTATAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGCGAATTGCAGAATTCCGTGAGTCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTATCAACCCTCAAGCCCGGCTTGGCCGTTGGGTCCCGCACCGTGGAGACCACGGTGGGCCCGAAAGATAATGGCAGAGCC-CGTGTGGACCCCTGGATGCAGCGAGCTTCT--GGCACGCGTCCGTCCGGT--CCTCCCGGCTCGGTCTCACCCGAAATTCTTTCTCAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAA Endocarpon_pulvinatum_BMC32483 ATTACCGAGTTAGGGTCCTCTGGGCCCGACCTCCAACCCTTGCCTATCTTACCACGTTGCTTCGGCGGGCCCG-CCCTGATCGGGCCGCCGGGGATGTTCGTCCCCGGCCC-GCGCCCGTCGAGAGCCAAA-ATCCTTCCAACAGTGACGTCTGAGTCCTAGAT-AAATAA--AGTATAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGCGAATTGCAGAATTCCGTGAGTCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTATCAACCCTCAAGCCCGGCTTGGCCGTTGGGTCCCGCACCGTGGAGACCACGGTGGGCCCGAAAGATAATGGCAGAGCC-CGTGTGGACCCCTGGATGCAGCGAGCTTCT--GGCACGCGTCCGTCCGGT--CCTCCCGGCTCGGTCTCACCCGAAATTCTTTCTCAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAA Endocarpon_pulvinatum_RR3686 ATTACCGAGTTAGGGTCCTCTGGGCCCGACCTCCAACCCTTGCCTATCTTACCACGTTGCTTCGGCGGGCCCG-CCCTGATCGGGCCGCCGGGGATGTTCGTCCCCGGCCC-GCGCCCGTCGAGAGCCAAA-TTCCTTCCAACAGTGACGTCTGAGTCCTAGAT-AAATAA--AGTATAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGCGAATTGCAGAATTCCGTGAGTCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCGAAGGGCATGCCTGTTCGAGCGTCATTATCAACCCTCAAGCCCGGCTTGGCCGTTGGGTCCCGCACCGTGGAGACCACGGTGGGCCCGAAAGATAATGGCAGAGCC-CGTGTGGACCCCTGGATGCAGCGAGCTT??????????????????????????????????????????????????????????????????????????????????????????????????? Endocarpon_pulvinatum_SH314 ATTACCGAGTTAGGGTCCTCTGGGCCCGACCTCCAACCCTTGCCTATCTTACCACGTTGCTTCGGCGGGCCCG-CCCTGATCGGGCCGCCGGGGATGTTCGTCCCCGGCCC-GCGCCCGTCGAGAGCCAAA-TTCCTTCCAACAGTGACGTCTGAGTCCTAGAT-AAATAA--AGTATAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGCGAATTGCAGAATTCCGTGAGTCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTATCAACCCTCAAGCCCGGCTTGGCCGTTGGGTCCCGCACCGTGGAGACCACGGTGGGCCCGAAAGATAATGGCAGAGCC-CGTGTGGACCCCTGGATGCAGCGAGCTTCT--GGCACGCGTCCGTCCGGT--CCTCCCGGCTCGGTCTCACCCGAAATTCTTTCTCAGGTTGACCTCGGATCA???????????????????????? Endocarpon_pulvinatum_SH347 ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????A-TTCCTTCCAACAGTGACGTCTGAGTCCTAGAT-AAATAA--AGTATAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGCGAATTGCAGAATTCCGTGAGTCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTATCAACCCTCAAGCCCGGCTTGGCCGTTGGGTCCCGCACCGTGGAGACCACGGTGGGCCCAAAAGATAATGGCAGAGCC-CGTGTGGACCCCTGGATGCAGCGAGCTTCT--GGCACGCGTCCGTCCGGT--CCTCCCGGCTCGGTCTCACCCGAAATTCTTTCTCAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAA Endocarpon_tortuosum_BMC12394 ATTACCGAGTTAGGGTCCTCGGGGCCCGACCTCCAACCCTTGCCTATCTTACCACGTTGCTTCGGCGGGCCCG-CCCTGATCGGGCCGTCGGGGATGTTCGTCCCCGGCCC-GCGCCCGTCGAGAGCCAAAAATCCCTCCAACAGTGACGTCTGAGTCCTAGAT-AAATAA--AGTATAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGCGAATTGCAGAATTCCGTGAGTCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCGAAGGGCATGCCTGTTCGAGCGTCATTATCAACCCTCAAGCCCGGCTTGGCCGTTGGGTCCCGCACCGTGGAGACCACGGTGGGCCCGAAAGATAATGGCAGAGCC-CGTGTGGACCCCTGGATGCAGCGAGCTTCT--GGCACGCGTCCGTCCGGT--CCTCCCGGCTCGGTCTCACCCGAAATTCTTTCTCCGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAA Staurothele_areolata_SH154 ATTACCGAGTTAGGGTCCTCTGGGCCCGACCTCCAACCCTTGCCTATCTTACCACGTTGCTTCGGCGGGCCCGTCCCTAATCGGACCGCCGGGGATGTTCGTCCCCGGCCC-GCGCCCGTCGAGAGCCAAA-TTCTTTCAAACAGTGACGTCTGAGTCCTAGATGAAATAA--AGTATAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGCGAATTGCAGAATTCCGTGAGTCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTATCAACCCTCAAGCCCGGCTTGGCCGTTGGGTCCCGCACCGTGGAGATCACGGTGGACCCGAAAGATAATGGCAGAGCC-CGTGTGGACCCCTGGATGCAGCGAGCTTCTTTGGCACGCGTCCGTCCGGT--CCTCCCGGCTCGGCCTCACCCGATTTTCTTTCTCAGGTTGACCTCG?ATCA?GTAGGGATACCC?CTGAACTTAA Staurothele_areolata_SH206 ATTACCGAGTTAGGGTCCTCTGGGCCCGACCTCCAACCCTTGCCTATCTTACCACGTTGCTTCGGCGGGCCCGTCCCT-----GACCGCCGGGGATGTTCATCTCCGGCCC-GCGCCCGTCGAGAGCCAAA-TTCTTCCAAACAGTGACGTCTGAGTCCTAGATGAAATAA--AGTATAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGCGAATTGCAGAATTCCGTGAGTCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTATCAACCCTCAAGCCCGGCTTGGCCGTTGGGTCCCGCACCGTGGAGACCACGGTGGGCCCGAAAGATAATGGCAGAGCC-CGTGTGGACCCCTGGATGCAGCGAGCTTCTTTGGCACGCGTCCGTCCGGT--CCTCCCGGCTCGGCCTCACCCGATTTTCTTTCTCAGGTTGACCTCGGATCA?GTAGGGATACCCGCTG??????? Staurothele_areolata_SH268 ATTACCGAGTTAGGGTCCTCTGGGCCCGACCTCCAACCCTTGCCTATCTTACCACGTTGCTTCGGCGGGCCCGTCCCTAATCGGACCGCCGGGGATGTTCGTCCCCGGCCC-GCGCCCGTCGAGAGCCAAA-TTCTTTCAAACAGTGACGTCTGAGTCCTAGATGAAATAA--AGTATAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGCGAATTGCAGAATTCCGTGAGTCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTATCAACCCTCAAGCCCGGCTTGGCCGTTGGGTCCCGCACCGTGGAGATCACGGTGGACCCGAAAGATAATGGCAGAGCC-CGTGTGGACCCCTGGATGCAGCGAGCTTCTTTGGCACGCGTCCGTCCGGT--CCTCCCGGCTCGGCCCCACCCGATTTTCTTTCTCAGGTTGACCTCGGATCA?GTAGGGATACCCGCTGAACTTAA Staurothele_clopima_SS087 ATTACCGAGTTAGGGTCCCCCGGGCCCGATCTCCAACCCTTGCCTATCCTACCACGTTGCTTCGGTGGGTCCGACCCCCGTGGGCCCGCCGGGGATGCCCGTCCCCGGCCC-GCACCCGCCGAAAGCCAAA-TCCGTTG-AACAGTGACGTCTGAGTCCTAAAAGATACGCG-ATAAAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGCGAATTGCAGAATTCCGTGAGTCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTATCAACCCTCAAGCCCGGCTTG-CCGTTGGGTCCCGCACCGTGGCGATCACGGTGGACCCGAAAGATAATGGCAGAGCCCCGCGGGGGACCCTGGATGCAGCGAGCTTCTCTGGCACGCGTCCGCCCGGTCCCCCCCCGGCTCGATCTC-CCGAAATCTCTTTCTC????????????????????????????????????????? Staurothele_dendritica_WB13227A ATTACCGAGCTAGGGTCCGCTGGGCCCGACCTCCCACCCTTGCCTACCTTACCACGTTGCTTCGGCGGGCCCGACCCCAACCGGACCGCCGGGGATA-CCGTCCCCGGCCC-GCGCCCGCCGAGGGCCAAA-TCCGCTG-AACAGTGACGTCTGAGTCGTAGATGAAATAA--AGCACAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGCGAATTGCAGAATTCCGTGAGTCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTGTCGACCCTCAAGCCCGGCTTG-CCGTTGGGTCCCGCACCGTGGAGTCCACGGTGGACCCGAAAGATAATGATGGAGCC-CGCGGGGACCCCCGGACGCAGCGAGCTTCTTTGGCACGCGTCCGCCGGGC--CGCCCGGGCCCGTCCCAACCGGGA-CTCTTTCTCAGG?????????????????????????????????????? Staurothele_dendritica_WB13227B ATTACCGAGCTAGGGTCCGCTGGGCCCGACCTCCCACCCTTGCCTACCTTACCACGTTGCTTCGGCGGGCCCGACCCCAACCGGACCGCCGGGGATA-CCGTCCCCGGCCC-GCGCCCGCCGAGGGCCAAA-TCCGCTG-AACAGTGACGTCTGAGTCGTAGATGAAATAA--AGCACAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGCGAATTGCAGAATTCCGTGAGTCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTGTCGACCCTCAAGCCCGGCTTG-CCGTTGGGTCCCGCACCGTGGAGTCCACGGTGGACCCGAAAGATAATGATGGAGCC-CGCGGGGACCCCCGGACGCAGCGAGCTTCTTTGGCACGCGTCCGCCGGGC--CGCCCGGGCCCGTCCCAACCGGAA-CTCTTTCTCAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAA Staurothele_drummondii_CG831 ATTACCGAGTTAGGGTCCTCTGGGCCCGACCTCCAACCCTTGCCTATCTTACCACGTTGCTTCGGCGGGCCCGTCCCTAATCGGACCGCCGGGGATGTTCGTCCCCGGCCC-GCGCCCGTCGAGAGCCAAA-TTCTTTCAAACAGTGACGTCTGAGTCCTAGATGAAATAA--AGTATAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGCGAATTGCAGAATTCCGTGAGTCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTATCAACCCTCAAGCCCGGCTTGGCCGTTGGGTCCCGCACCGTGGAGACCACGGTGGGCCCGAAAGATAATGGCAGAGCC-CGTGTGGACCCCTGGATGCAGCGAGCTTCTTTGGCACGCGTCCGTCCGGT--CCTCCCGGCTCGGCCTCACCCGAATTTCTTTCTCAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAA Staurothele_frustulenta_AA53935 ATTACCGAGTTAGGGTCCTCTGGGCCCGACCTCCAACCCTTGCCTATCTTACCACGTTGCTTCGGCGGGTCTGTCCCTAATCGGACCGCCGGGGATGTTCGTCCCCGGCCCCGCGCCCGTCGAGAGCCAAA-TTCTTTCAAACAGTGACGTCTGAGTCCTAGATGAAATAA--AGTATAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGCGAATTGCAGAATTCCGTGAGTCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTATCAACCCTCAAGCCCGGCTTGGCCGTTGGGTCCCGCACCGTGGAGACCACGGTGGGCCCGAAAGATAATGGCAGAGCC-CGTGTGGACCCCTGGATGCAGCGAGCTTCTTTGGCACGCGTCCGTCCGGT--CCTCCCGGCTCGGCCTCACCCGAATTTCTTTCTCAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAA Staurothele_fissa_CG586 ATTACCGAGTTAGGGTCCCCCGGGCCCGATCTCCAACCCTTGTCTATCGTTCCACGTTGCTTCGGCGGGCCCGACCCCAACGGGACCGCCGGGGATGTCCGTCCCCGGCCC-GTGCCCGCCGGGAGCCAAA-TTCTTTG-AACAGTGACGTCTGAGTCTTAGAAGATACCAAATCGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGCGAATTGCAGAATTCCGTGAGTCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTATCAACCCTCAAGCCCGGCTTG-CCGCTGGGTCCCGCACCGTGGAGAGCATGGTGGACCCAAAAGACAATGACAGAGCCCCGTGGGGACCCCTGGACGCAGCGAGCTTCTCTAGCACGCGTCCGCCCGGG--GCCCCCGGCTCGGTCTGAACCGAAATTCCTTCTCAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAA Staurothele_fissa_SH260 ATTACCGAGTTAGGGTCCCCCGGGCCCGATCTCCAACCCTTGTCTATCGTTCCACGTTGCTTCGGCGGGCCCGACCCCAACGGGACCGCCGGGGATGTCCGTCCCCGGCCC-GTGCCCGCCGGGAGCCAAA-TTCTTTG-AACAGTGACGTCTGAGTCTTAGAAGATACCAAATCGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGCGAATTGCAGAATTCCGTGAGTCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTATCAACCCTCAAGCCCGGCTTG-CCGCTGGGTCCCGCACCGTGGAGAGCATGGTGGACCCAAAAGACAATGACAGAGCCCCGTGGGGGCCCCTGGACGCAGCGAGCTTCTCTAGCACGCGTCCGCCCGGG--GCCCCCGGCTCGGTCTGAACCGAAATTCTTTCTCAGGTTGACCTCGGATCA?GTAGGGATACCCGCTGAACTTAA Staurothele_fissa_SH194 ATTACCGAGTTAGGGTCCCCCGGGCCCGATCTCCAACCCTTGTCTATCGTTCCACGTTGCTTCGGCGGGCCCGACCCCAACGGGACCGCCGGGGATGTCCGTCCCCGGCCC-GTGCCCGCCGGGAGCCAAA-TTCTTTG-AACAGTGACGTCTCAGTCTTAGAAGATACCAAATCGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGCGAATTGCAGAATTCCGTGAGTCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTATCAACCCTCAAGCCCGGCTTG-CCGCTGGGTCCCGCACCGTGGAGAGCATGGTGGACCCAAAAGACAATGACAGAGCCCCGTGGGGACCCCTGGACGCAGCGAGCTTCTCTAGCACGCGTCCGCCCGGG--GCCCCCGGCTCGGTCTGAACCGAAATTCTTTCTCAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAA Staurothele_fissa_SH248 ATTACCGAGTTAGGGTCCCCCGGGCCCGATCTCCAACCCTTGTCTATCGTTCCACGTTGCTTCGGCGGGCCCGACCCCAACGGGACCGCCGGGGATGTCCGTCCCCGGCCC-GTGCCCGCCGGGAGCCAAA-TTCTTTG-AACAGTGACGTCTCAGTCTTAGAAGATACCAAATCGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGCGAATTGCAGAATTCCGTGAGTCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTATCAACCCTCAAGCCCGGCTTG-CCGCTGGGTCCCGCACCGTGGAGAGCATGGTGGACCCAAAAGACAATGACAGAGCCCCGTGGGGACCCCTGGACGCAGCGAGCTTCTCTAGCACGCGTCCGCCCGGG--GCCCCCGGCTCGGTCTGAACCGAAATTCTTTCTCAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAA ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 543; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 543; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 543; END; BEGIN TREES; Title Imported_trees; LINK Taxa = Taxa; TRANSLATE [0] 1 Endocarpon_pulvinatum_BMC15912, [1] 2 Endocarpon_pulvinatum_BMC18884, [2] 3 Endocarpon_pulvinatum_BMC20686, [3] 4 Endocarpon_pulvinatum_BMC26544, [4] 5 Endocarpon_pulvinatum_BMC27176B, [5] 6 Endocarpon_pulvinatum_BMC27947, [6] 7 Endocarpon_pulvinatum_BMC29161, [7] 8 Endocarpon_pulvinatum_BMC32483, [8] 9 Endocarpon_pulvinatum_RR3686, [9] 10 Endocarpon_pulvinatum_SH314, [10] 11 Endocarpon_pulvinatum_SH347, [11] 12 Endocarpon_tortuosum_BMC12394, [12] 13 Staurothele_areolata_SH154, [13] 14 Staurothele_areolata_SH206, [14] 15 Staurothele_areolata_SH268, [15] 16 Staurothele_clopima_SS087, [16] 17 Staurothele_dendritica_WB13227A, [17] 18 Staurothele_dendritica_WB13227B, [18] 19 Staurothele_drummondii_CG831, [19] 20 Staurothele_frustulenta_AA53935, [20] 21 Staurothele_fissa_CG586, [21] 22 Staurothele_fissa_SH260, [22] 23 Staurothele_fissa_SH194, [23] 24 Staurothele_fissa_SH248; TREE Imported_tree_1 = (1:0.00000100000050002909,(((((11:0.0033379547625855197,4:0.0018916193184925342)43:0.00045532793020631996,((((8:0.00000100000050002909,7:0.00000100000050002909)71:0.00000100000050002909,(3:0.00000100000050002909,5:0.00000100000050002909)99:0.00964470254509864)12:0.002356201691329474,(((18:0.00000100000050002909,17:0.0027249677054520098)100:0.10396239923697591,((22:0.002382662783578743,((24:0.00000100000050002909,23:0.00000100000050002909)90:0.0023826183699194032,21:0.002374416339900543)58:0.00000100000050002909)100:0.08415845042110864,16:0.09440217002238178)95:0.02946817090811744)80:0.03109253672254919,((14:0.007283360436110608,(15:0.002283360631561897,13:0.00000100000050002909)79:0.004573351118964946)55:0.0025436281153984374,(19:0.00000100000050002909,20:0.004568563740249419)79:0.0021225017968259942)47:0.00000100000050002909)79:0.014800523226948503)1:0.00000100000050002909,10:0.00000100000050002909)1:0.00000100000050002909)28:0.0023475779781929594,2:0.00000100000050002909)2:0.00000100000050002909,6:0.00000100000050002909)14:0.00000100000050002909,9:0.00000100000050002909)100:0.012201624882404082,12:0.00000100000050002909); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1488950211318; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 2434298400250335194; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 108412000317402715; mqVersion 304; checksumv 0 3 3409169173 null getNumChars 543 numChars 543 getNumTaxa 24 numTaxa 24 short true bits 15 states 15 sumSquaresStatesOnly 244051.0 sumSquares 244051.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 184; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 472; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #2434298400250335194 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 1229.1488950203777.8204947772668007871; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 516 400; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '(1:0.00000100000050002909,(((((11:0.0033379547625855197,4:0.0018916193184925342)43:0.00045532793020631996,((((8:0.00000100000050002909,7:0.00000100000050002909)71:0.00000100000050002909,(3:0.00000100000050002909,5:0.00000100000050002909)99:0.00964470254509864)12:0.002356201691329474,(((18:0.00000100000050002909,17:0.0027249677054520098)100:0.10396239923697591,((22:0.002382662783578743,((24:0.00000100000050002909,23:0.00000100000050002909)90:0.0023826183699194032,21:0.002374416339900543)58:0.00000100000050002909)100:0.08415845042110864,16:0.09440217002238178)95:0.02946817090811744)80:0.03109253672254919,((14:0.007283360436110608,(15:0.002283360631561897,13:0.00000100000050002909)79:0.004573351118964946)55:0.0025436281153984374,(19:0.00000100000050002909,20:0.004568563740249419)79:0.0021225017968259942)47:0.00000100000050002909)79:0.014800523226948503)1:0.00000100000050002909,10:0.00000100000050002909)1:0.00000100000050002909)28:0.0023475779781929594,2:0.00000100000050002909)2:0.00000100000050002909,6:0.00000100000050002909)14:0.00000100000050002909,9:0.00000100000050002909)100:0.012201624882404082,12:0.00000100000050002909)<> ;'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #108412000317402715 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 516 400; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;