#NEXUS [written Mon Mar 13 15:08:46 EDT 2017 by Mesquite version 3.2 (build 801) at ag-plp-11ba0tj.ag.cornell.edu/132.236.30.46] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=18; TAXLABELS Puccinia_coronata_DQ414723 _Puccinia_coronata_DQ414724 Puccinia_coronata_DQ355449 Puccinia_coronata_DQ355452 Puccinia_coronata_DQ355442 _Puccinia_coronata_DQ355441 _Puccinia_coronata_f._sp._avenae_AY114290 Puccinia_sp._Alder_Buckthorn_CT _Puccinia_graminis_f._sp._tritici_AY114289 Puccinia_coronata_DQ355443 Puccinia_coronata_DQ355447 Puccinia_coronata_DQ355448 Puccinia_coronata_DQ355446_ Puccinia_coronata_DQ355450 Puccinia_coronata_DQ355451 Puccinia_graminis_DQ355455_ Puccinia_coronata_DQ355445 _Puccinia_coronata_DQ355444 ; END; BEGIN CHARACTERS; TITLE 'Szabo_ITS_ML'; DIMENSIONS NCHAR=1213; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = ?; MATRIX Puccinia_coronata_DQ414723 TAAAAGAAT-AGAGTGCACTTTATTGTGGCTCGACCCCCCTTTTATAAAC _Puccinia_coronata_DQ414724 TAAAAGAAT-AGAGTGCACTTTATTGTGGCTCGACCCCCCTTTTATAAAC Puccinia_coronata_DQ355449 TAAAAGAAT-AGAGTGCACTTGATTGTGGCTTGACCCCCTTTT---ATAT Puccinia_coronata_DQ355452 TAAAAGAAT-AGAGTGCACTTTATTGTGGCTCGACCCCCCTTTTATAAAC Puccinia_coronata_DQ355442 TAAAAGAAT-AGAGTGCACTTGATTGTGGCTCGACCCCTTTTA---TAAT _Puccinia_coronata_DQ355441 TAAAAGAAT-AGAGTGCACTTGATTGTGGCTCGACCCCTTTTA---TAAT _Puccinia_coronata_f._sp._avenae_AY114290 TAAAAGAAT-AGAGTGCACTTGATTGTGGCTCGACCCCTTTTA---TAAT Puccinia_sp._Alder_Buckthorn_CT TAAAAGAAT-AGAGTGCACTTGATTGTGGCTCGACCCCTTTTA---CCAT _Puccinia_graminis_f._sp._tritici_AY114289 TAAAAGAATTAGAGTGCACTTTATTGTGGCTCGACTCTCTTAT----AAA Puccinia_coronata_DQ355443 TAAAAGAAT-AGAGTGCACTTGATTGTGGCTCGACCCCTTTTA---TAAT Puccinia_coronata_DQ355447 TAAAAGAAT-AGAGTGCACTTGATTGTGGCTCGACCCCCTTTT---ATAT Puccinia_coronata_DQ355448 TAAAAGAAT-AGAGTGCACTTGATTGTGGCTCGACCCCCTTTT---ATAT Puccinia_coronata_DQ355446_ TAAAAGAAT-AGAGTGCACTTGATTGTGGCTCAACCCCCTTTT---ATAT Puccinia_coronata_DQ355450 TAAAAGAAT-AGAGTGCACTTGATTGTGGCTTGACCCCCTTTT---ATAT Puccinia_coronata_DQ355451 TAAAAGAAT-AGAGTGCACTTGATTGTGGCTTGACCCCCTTTT---ATAT Puccinia_graminis_DQ355455_ TAAAAGAATTAGAGTGCACTTTATTGTGGCTCAACTCTCTTAT----AAA Puccinia_coronata_DQ355445 TAAAAGAAT-AGAGTGCACTTGATTGTGGCTCAACCCCCTTTT---ATAT _Puccinia_coronata_DQ355444 TAAAAGAAT-AGAGTGCACTTGATTGTGGCTTGACCCCTTTTA---TAAT Puccinia_coronata_DQ414723 CTTCACCCAAACC--CAAAC--ACTTGTTTGCATGATTTGAAAGAGTCAT _Puccinia_coronata_DQ414724 CTTCACCCAAACC--CAAAC--ACTTGTTTGCATGATTTGAAAGAGTCAT Puccinia_coronata_DQ355449 TC--ACCCAAACC--CAAAC--ACTTGTTTGCATGATTTGAAAGGGTCAT Puccinia_coronata_DQ355452 CTTCACCCAAACC--CAAAC--ACTTGTTTGCATGATTTGAAAGAGTCAT Puccinia_coronata_DQ355442 TC--ACCCAACTTTTAAAAA-GACTTGGTTGCATGATTTGAAAGAGTCAT _Puccinia_coronata_DQ355441 TC--ACCCAACTTTTAAAAA-GACTTGGTTGCATGATTTGAAAGAGTCAT _Puccinia_coronata_f._sp._avenae_AY114290 TC--ACCCAACTTTTAAAAA-GACTTGGTTGCATGATTTGAAAGAGTCAT Puccinia_sp._Alder_Buckthorn_CT TC--ACCCAACTTAAA-----GACTTGGTTGCATGATTTGAAAGAATCAT _Puccinia_graminis_f._sp._tritici_AY114289 CCAAACCCAAACACTTTTAAAAACTTGGTTGCATGACTCTCAAAGGTCAT Puccinia_coronata_DQ355443 TC--ACCCAACTTAAAAAAA-GACTTGGTTGCATGATTTGAAAGAATCAT Puccinia_coronata_DQ355447 TCTCACCCAAACCCCCAAAC--ACTTGTTTGCATGATTTGAAAGAGTCAT Puccinia_coronata_DQ355448 TCTCACCCAAACCCCCAAAC--ACTTGTTTGCATGATTTGAAAGAGTCAT Puccinia_coronata_DQ355446_ TCTCACCCAAACCCCCAAAC--ACTTGTTTGCATGATTTGAAAGAGTCAT Puccinia_coronata_DQ355450 TC--ACCCAAACC--CAAAC--ACTTGTTTGCATGATTTGAAAGGGTCAT Puccinia_coronata_DQ355451 TC--ACCCAAACC--CAAAC--ACTTGTTTGCATGATTTGAAAGGGTCAT Puccinia_graminis_DQ355455_ CCAAACCCAAACACTTTTAAAAACTTGGTTGCATGACTGTCAAAGGTCAT Puccinia_coronata_DQ355445 TCTCACCCAAACCCCCAAAC--ACTTGTTTGCATGATTTGAAAGAGTCAT _Puccinia_coronata_DQ355444 TC--ACCCAACTTAAAAAAAAGACTTGGTTGCATGATTTGAAAGAATCAT Puccinia_coronata_DQ414723 TGCAATCAAGTATACGTAGCTGCCTTTT-ATTA-GGAAAGTTACATTACC _Puccinia_coronata_DQ414724 TGCAATCAAGTATACGTAGCTGCCTTTT-ATTA-GGAAAGTTACATTACC Puccinia_coronata_DQ355449 TGCAATCAAGTATACGTAGCTGCCTTTTTATTAAGGAAAGTTACATTACC Puccinia_coronata_DQ355452 TGCAATCAAGTATACGTAGCTGCCTTTT-ATTA-GGAAAGTTACATTACC Puccinia_coronata_DQ355442 TGCAATTGAGTATACGTAAC-GTCCTTTTATTA-GGAGAGTTACATTACC _Puccinia_coronata_DQ355441 TGCAATTGAGTATACGTAAC-GTCCTTTTATTA-GGAGAGTTACATTACC _Puccinia_coronata_f._sp._avenae_AY114290 TGCAAGTGAGTATACGTAAC-GTCCTTTTATTA-GGAGAGTTACATTACC Puccinia_sp._Alder_Buckthorn_CT TGCAATTGAGTATACGTAAC-GTCCTTTTATTA-GGAGAGTTACATTACC _Puccinia_graminis_f._sp._tritici_AY114289 TGCAATTGAGTATACGTAAC--ATTCTTAATT--GAATTGTTGCATTACC Puccinia_coronata_DQ355443 TGCAATTGAGTATACGTAAC-GTCCTTTTATTA-GGAGAGTTACATTACC Puccinia_coronata_DQ355447 TGCAATCAAGTATACGTAGCTGCCTTTTTATTAAGGAAAGTTACATTACC Puccinia_coronata_DQ355448 TGCAATCAAGTATACGTAGCTGCCTTTTTATTAAGGAAAGTTACATTACC Puccinia_coronata_DQ355446_ TGCAATCAAGTATACGTAGCTGCCTTTTTATTAAGGAAAGTTACATTACC Puccinia_coronata_DQ355450 TGCAATCAAGTATACGTAGCTGCCTTTTTATTAAGGAAAGTTACATTACC Puccinia_coronata_DQ355451 TGCAATCAAGTATACGTAGCTGCCTTTTTATTAAGGAAAGTTACATTACC Puccinia_graminis_DQ355455_ TGCAATTGAGTATACGTAAC--ATTCTTAATT--GAATTGTTGCATTACC Puccinia_coronata_DQ355445 TGCAATCAAGTATACGTAGCTGCCTTTTTATTAAGGAAAGTTACATTACC _Puccinia_coronata_DQ355444 TGCAATTGAGTATACGTAAC-GTCCTTTTATTA-GGAGAGTTACATTACC Puccinia_coronata_DQ414723 CTTCATTAATTTTTATATCCCCCCC-----TTTATTATATACACAAGTTT _Puccinia_coronata_DQ414724 CTTCATTAATTTTTATATCCCCCCC-----TTTATTATATACACAAGTTT Puccinia_coronata_DQ355449 CTTTATTAATT---ATATCCTTCCCCCCCCTTTATTATATACACAAGTTT Puccinia_coronata_DQ355452 CTTCATTAATTTTTATATCCCCCCCCCCCCTTTATTATATACACAAGTTT Puccinia_coronata_DQ355442 CCC--TTAATT---TTATTTTCACCCCCCCTTTATTATATACACAAGTTT _Puccinia_coronata_DQ355441 CCC--TTAATT---TTATTTTCACCCCCCCTTTATTATATACACAAGTTT _Puccinia_coronata_f._sp._avenae_AY114290 CCC--TTAATT---TTATTTTCACCCCCCCTTTATTATATACACAAGTTT Puccinia_sp._Alder_Buckthorn_CT CCC--TTATTT---TTATTTTCACCCCCCCTTTATTATATACACAAGTTT _Puccinia_graminis_f._sp._tritici_AY114289 CCCCCTCCCTTT--TTTATAT------TTTTTTTAACAAAACACAAGTTT Puccinia_coronata_DQ355443 CCC--TTATTT---TTATTTTCACCCCCCCTTTATTATATACACAAGTTT Puccinia_coronata_DQ355447 CTTTATTAAA----ATATCC-----CCCCCTTTATTATATACACAAGTTT Puccinia_coronata_DQ355448 CTTTATTAAA----ATATCC-----CCCCCTTTATTATATACACAAGTTT Puccinia_coronata_DQ355446_ CTTTATTAAA----ATATCC-----CCCCCTTTATTATATACACAAGTTT Puccinia_coronata_DQ355450 CTTTATTAATT---ATATCCTTCCCCCCCCTTTATTATATACACAAGTTT Puccinia_coronata_DQ355451 CTTTATTAATT---ATATCCTTCCCCCCCCTTTATTATATACACAAGTTT Puccinia_graminis_DQ355455_ CCCCCTCCCTTA--TTATTTT------TATTTTTTTTTAAACACAAGTTT Puccinia_coronata_DQ355445 CTTTATTAAA----ATATCC-----CCCCCTTTATTATATACACAAGTTT _Puccinia_coronata_DQ355444 CCC--TTATTT---TTATTTTCACCCCCCCTTTATTATATACACAAGTTT Puccinia_coronata_DQ414723 AAATGAATGTAAAACCCCCCTTTAAATTAAAA--TAACTTTTAACAATGG _Puccinia_coronata_DQ414724 AAATGAATGTAAAACCCCCCTTTAAATTAAAA--TAACTTTTAACAATGG Puccinia_coronata_DQ355449 AAATGAATGTAAAACCCCC-TTTAAATTAAAAAATAACTTTTAACAATGG Puccinia_coronata_DQ355452 AAATGAATGTAAAACCCCCCTTTAAATTAAAA--TAACTTTTAACAATGG Puccinia_coronata_DQ355442 AAATGAATGTAAAACCCCC-TTTAAATTAAAA--TAACTTTTAACAATGG _Puccinia_coronata_DQ355441 AAATGAATGTAAAACCCCC-TTTAAATTAAAA--TAACTTTTAACAATGG _Puccinia_coronata_f._sp._avenae_AY114290 AAATGAATGTAAAACCCCC-TTTAAATTAAAA--TAACTTTTAACAATGG Puccinia_sp._Alder_Buckthorn_CT AAATGAATGTAAAACCCCC-TTTAAATTAAAA--TAACTTTTAACAATGG _Puccinia_graminis_f._sp._tritici_AY114289 AAATGAATGTAACCAAACC-TTTAATTTATAAA-TAACTTTTAACAATGG Puccinia_coronata_DQ355443 AAATGAATGTAAAACCCCC-TTTAAATTAAAA--TAACTTTTAACAATGG Puccinia_coronata_DQ355447 AAATGAATGTAAAACCCCC-TTTAAATTAAAA--TAACTTTTAACAATGG Puccinia_coronata_DQ355448 AAATGAATGTAAAACCCCC-TTTAAATTAAAA--TAACTTTTAACAATGG Puccinia_coronata_DQ355446_ AAATGAATGTAAAACCCCC-TTTAAATTAAAA--TAACTTTTAACAATGG Puccinia_coronata_DQ355450 AAATGAATGTAAAACCCCC-TTTAAATTAAAAAATAACTTTTAACAATGG Puccinia_coronata_DQ355451 AAATGAATGTAAAACCCCC-TTTAAATTAAAAAATAACTTTTAACAATGG Puccinia_graminis_DQ355455_ AAATGAATGTAACCAAACC-TTTAATTTATAAA-TAACTTTTAACAATGG Puccinia_coronata_DQ355445 AAATGAATGTAAAACCCCC-TTTAAATTAAAA--TAACTTTTAACAATGG _Puccinia_coronata_DQ355444 AAATGAATGTAAAACCCCC-TTTAAATTAAAA--TAACTTTTAACAATGG Puccinia_coronata_DQ414723 ATCTCTAGGCTCTCACATCGATGAAGAACACAGTGAAATGTGATAAGTAA _Puccinia_coronata_DQ414724 ATCTCTAGGCTCTCACATCGATGAAGAACACAGTGAAATGTGATAAGTAA Puccinia_coronata_DQ355449 ATCTCTAGGCTCTCACATCGATGAAGAACACAGTGAAATGTGATAAGTAA Puccinia_coronata_DQ355452 ATCTCTAGGCTCTCACATCGATGAAGAACACAGTGAAATGTGATAAGTAA Puccinia_coronata_DQ355442 ATCTCTAGGCTCTCACATCGATGAAGAACACAGTGAAATGTGATAAGTAA _Puccinia_coronata_DQ355441 ATCTCTAGGCTCTCACATCGATGAAGAACACAGTGAAATGTGATAAGTAA _Puccinia_coronata_f._sp._avenae_AY114290 ATCTCTAGGCTCTCACATCGATGAAGAACACAGTGAAATGTGATAAGTAA Puccinia_sp._Alder_Buckthorn_CT ATCTCTAGGCTCTCACATCGATGAAGAACACAGTGAAATGTGATAAGTAA _Puccinia_graminis_f._sp._tritici_AY114289 ATCTCTAGGCTCTCACATCGATGAAGAACACAGTGAAATGTGATAAGTAA Puccinia_coronata_DQ355443 ATCTCTAGGCTCTCACATCGATGAAGAACACAGTGAAATGTGATAAGTAA Puccinia_coronata_DQ355447 ATCTCTAGGCTCTCACATCGATGAAGAACACAGTGAAATGTGATAAGTAA Puccinia_coronata_DQ355448 ATCTCTAGGCTCTCACATCGATGAAGAACACAGTGAAATGTGATAAGTAA Puccinia_coronata_DQ355446_ ATCTCTAGGCTCTCACATCGATGAAGAACACAGTGAAATGTGATAAGTAA Puccinia_coronata_DQ355450 ATCTCTAGGCTCTCACATCGATGAAGAACACAGTGAAATGTGATAAGTAA Puccinia_coronata_DQ355451 ATCTCTAGGCTCTCACATCGATGAAGAACACAGTGAAATGTGATAAGTAA Puccinia_graminis_DQ355455_ ATCTCTAGGCTCTCACATCGATGAAGAACACAGTGAAATGTGATAAGTAA Puccinia_coronata_DQ355445 ATCTCTAGGCTCTCACATCGATGAAGAACACAGTGAAATGTGATAAGTAA _Puccinia_coronata_DQ355444 ATCTCTAGGCTCTCACATCGATGAAGAACACAGTGAAATGTGATAAGTAA Puccinia_coronata_DQ414723 TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCG _Puccinia_coronata_DQ414724 TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCG Puccinia_coronata_DQ355449 TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCG Puccinia_coronata_DQ355452 TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCG Puccinia_coronata_DQ355442 TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCG _Puccinia_coronata_DQ355441 TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCG _Puccinia_coronata_f._sp._avenae_AY114290 TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCG Puccinia_sp._Alder_Buckthorn_CT TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCG _Puccinia_graminis_f._sp._tritici_AY114289 TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATCTTGCA Puccinia_coronata_DQ355443 TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCG Puccinia_coronata_DQ355447 TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCG Puccinia_coronata_DQ355448 TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCG Puccinia_coronata_DQ355446_ TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCG Puccinia_coronata_DQ355450 TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCG Puccinia_coronata_DQ355451 TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCG Puccinia_graminis_DQ355455_ TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATCTTGCA Puccinia_coronata_DQ355445 TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCG _Puccinia_coronata_DQ355444 TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCG Puccinia_coronata_DQ414723 CCTTTTGGTATTCCAAAAGGCACACCTGTTTGAGTGTCATGAAACCCCCT _Puccinia_coronata_DQ414724 CCTTTTGGTATTCCAAAAGGCACACCTGTTTGAGTGTCATGAAACCCCCT Puccinia_coronata_DQ355449 CCTTTTGGTATTCCAAGAGGCACACCTGTTTGAGTGTCATGAAACCCTCT Puccinia_coronata_DQ355452 CCTTTTGGTATTCCAAAAGGCACACCTGTTTGAGTGTCATGAAACCCCCT Puccinia_coronata_DQ355442 CCTTTTGGTATTCCAAAAGGCACACCTGTTTGAGTGTCATGAAACCCTCT _Puccinia_coronata_DQ355441 CCTTTTGGTATTCCAAAAGGCACACCTGTTTGAGTGTCATGAAACCCTCT _Puccinia_coronata_f._sp._avenae_AY114290 CCTTTTGGTATTCCAAAAGGCACACCTGTTTGAGTGTCATGAAACCCTCT Puccinia_sp._Alder_Buckthorn_CT CCTTTTGGTATTCCAAAAGGCACACCTGTTTGAGTGTCATGAAACCCTCT _Puccinia_graminis_f._sp._tritici_AY114289 CCTTTTGGTATTCCAAAAGGTACACCTGTTTGAGTGTCATGAAACCCTCT Puccinia_coronata_DQ355443 CCTTTTGGTATTCCAAAAGGCACACCTGTTTGAGTGTCATGAAACCCTCT Puccinia_coronata_DQ355447 CCTTTTGGTATTCCAAAAGGCACACCTGTTTGAGTGTCATGAAACCCTCT Puccinia_coronata_DQ355448 CCTTTTGGTATTCCAAAAGGCACACCTGTTTGAGTGTCATGAAACCCTCT Puccinia_coronata_DQ355446_ CCTTTTGGTATTCCAAAAGGCACACCTGTTTGAGTGTCATGAAACCCTCT Puccinia_coronata_DQ355450 CCTTTTGGTATTCCAAGAGGCACACCTGTTTGAGTGTCATGAAACCCTCT Puccinia_coronata_DQ355451 CCTTTTGGTATTCCAAGAGGCACACCTGTTTGAGTGTCATGAAACCCTCT Puccinia_graminis_DQ355455_ CCTTTTGGTATTCCAAAAGGTACACCTGTTTGAGTGTCATGAAACCCTCT Puccinia_coronata_DQ355445 CCTTTTGGTATTCCAAAAGGCACACCTGTTTGAGTGTCATGAAACCCTCT _Puccinia_coronata_DQ355444 CCTTTTGGTATTCCAAAAGGCACACCTGTTTGAGTGTCATGAAACCCTCT Puccinia_coronata_DQ414723 CACAAAACAACTTTATTGTT-GCTTT---GTGGATGTTGAGTGTTGCTAT _Puccinia_coronata_DQ414724 CACAAAACAACTTTATTGTT-GCTTT---GTGGATGTTGAGTGTTGCTAT Puccinia_coronata_DQ355449 CACAAAATAACTTTATTGTT-GCTTT---GTGGATGTTGAGTGTTGCTAT Puccinia_coronata_DQ355452 CACAAAACAACTTTATTGTT-GCTTT---GTGGATGTTGAGTGTTGCTAT Puccinia_coronata_DQ355442 CACAAAACAACTTTATTGTTGCTTTTTTTGTGGATGTTGAGTGTTGCTAT _Puccinia_coronata_DQ355441 CACAAAACAACTTTATTGTTGCTTTTTTTGTGGATGTTGAGTGTTGCTAT _Puccinia_coronata_f._sp._avenae_AY114290 CACAAAACAACTTTATTGTTGCTTTTTTTGTGGATGTTGAGTGTTGCTAT Puccinia_sp._Alder_Buckthorn_CT CACAAAACAACTTTATTGTTGCTTTTTT-GTGGATGTTGAGTGTTGCTAT _Puccinia_graminis_f._sp._tritici_AY114289 CATTAAACATTTTTTTAATAATTTGTTTATTGGATGTTGAGTGTTGCTAT Puccinia_coronata_DQ355443 CACAAAACAACTTTATTGTTGCTTTTTT-GTGGATGTTGAGTGTTGCTAT Puccinia_coronata_DQ355447 CACAAAATAACTTTATTGTTTGCTTT---GTGGATGTTGAGTGTTGCTAT Puccinia_coronata_DQ355448 CACAAAATAACTTTATTGTTTGCTTT---GTGGATGTTGAGTGTTGCTAT Puccinia_coronata_DQ355446_ CACAAAATAACTTTATTGTTTGCTTT---GTGGATGTTGAGTGTTGCTAT Puccinia_coronata_DQ355450 CACAAAATAACTTTATTGTT-GCTTT---GTGGATGTTGAGTGTTGCTAT Puccinia_coronata_DQ355451 CACAAAATAACTTTATTGTT-GCTTT---GTGGATGTTGAGTGTTGCTAT Puccinia_graminis_DQ355455_ CATTAAACATTTTATTTTTGATTTGTTTAGTGGATGTTGAGTGTTGCTGT Puccinia_coronata_DQ355445 CACAAAATAACTTTATTGTTTGCTTT---GTGGATGTTGAGTGTTGCTAT _Puccinia_coronata_DQ355444 CACAAAACAACTTTATTGTTGCTCTTTT-GTGGATGTTGAGTGTTGCTAT Puccinia_coronata_DQ414723 ATAATATTATAGCTCACTTTAAATATATAAGTCACACACACT-CTTCAAG _Puccinia_coronata_DQ414724 ATAATATTATAGCTCACTTTAAATATATAAGTCACACACACT-CTTCAAG Puccinia_coronata_DQ355449 ATAAAATTATAGCTCACTTTAAATATATAAGTCACACACTCT---TCAAG Puccinia_coronata_DQ355452 ATAATATTATAGCTCACTTTAAATATATAAGTCACACACACTTCTTCAAG Puccinia_coronata_DQ355442 ATATTT--ATAGCTCACTTTAAATATATAAGTCACAC--TTT---TCAAG _Puccinia_coronata_DQ355441 ATATTT--ATAGCTCACTTTAAATATATAAGTCACAC--TTT---TCAAG _Puccinia_coronata_f._sp._avenae_AY114290 ATATTT--ATAGCTCACTTTAAATATATAAGTCACAC--TTT---TCAAG Puccinia_sp._Alder_Buckthorn_CT ATTGTT--ATAGCTCACTTTAAATATATAAGTCACAC--TTT---TCAAG _Puccinia_graminis_f._sp._tritici_AY114289 A----ATTATAGCTCACTTTAAATATATAAGTCAC----TTT---TCAAA Puccinia_coronata_DQ355443 ATTTTTTTATAGCTCACTTTAAATATATAAGTCACAC--TTT---TCAAG Puccinia_coronata_DQ355447 A--ATATTATAGCTCACTTTAAATATATAAGTCACACACTCT---TCAAG Puccinia_coronata_DQ355448 A--ATATTATAGCTCACTTTAAATATATAAGTCACACACTCT---TCAAG Puccinia_coronata_DQ355446_ A--ATATTATAGCTCACTTTAAATATATAAGTCACACACTCT---TCAAG Puccinia_coronata_DQ355450 ATAAAATTATAGCTCACTTTAAATATATAAGTCACACACTCT---TCAAG Puccinia_coronata_DQ355451 ATAAAATTATAGCTCACTTTAAATATATAAGTCACACACTCT---TCAAG Puccinia_graminis_DQ355455_ A----CCTATAGCTCACTTTAAATATATAAGTCAC----TTT---TCAAA Puccinia_coronata_DQ355445 A--ATATTATAGCTCACTTTAAATATATAAGTCACACACTCT---TCAAG _Puccinia_coronata_DQ355444 ATTTTTT-ATAGCTCACTTTAAATATATAAGTCACAC--TTT---TCAAG Puccinia_coronata_DQ414723 TAAGTTGGATTGACTTGGTGTAATAAT---TT--AATCATCACATCAAGG _Puccinia_coronata_DQ414724 TAAGTTGGATTGACTTGGTGTAATAAT---TT--AATCATCACATCAAGG Puccinia_coronata_DQ355449 TAAGTTGGATTGACTTGGTGTAATAATATTTT--AATCATCACATCAAGG Puccinia_coronata_DQ355452 TAAGTTGGATTGACTTGGTGTAATAAT---TT--AATCATCACATCAAGG Puccinia_coronata_DQ355442 TAAGTTGGATTGACTTGGTGTAATAAT---TT--TATCATCACATCAAGG _Puccinia_coronata_DQ355441 TAAGTTGGATTGACTTGGTGTAATAAT---TT--TATCATCACATCAAGG _Puccinia_coronata_f._sp._avenae_AY114290 TAAGTTGGATTGACTTGGTGTAATAAT---TT--TATCATCACATCAAGG Puccinia_sp._Alder_Buckthorn_CT TAAGTTGGATTGACTTGGTGTAATAAT---TTTCCATCATCACATCAAGG _Puccinia_graminis_f._sp._tritici_AY114289 TAAGTTGGATTGACTTGGTGTAATAAT---TT--TATCATCACATCAAGG Puccinia_coronata_DQ355443 TAAGTTGGATTGACTTGGTGTAATAAT---TT--CATCATCACATCAAGG Puccinia_coronata_DQ355447 TAAGTTGGATTGACTTGGTGTAATAAT---TT--AATCATCACATCAAGG Puccinia_coronata_DQ355448 TAAGTTGGATTGACTTGGTGTAATAAT---TT--AATCATCACATCAAGG Puccinia_coronata_DQ355446_ TAAGTTGGATTGACTTGGTGTAATAAT---TT--AATCATCACATCAAGG Puccinia_coronata_DQ355450 TAAGTTGGATTGACTTGGTGTAATAATATTTT--AATCATCACATCAAGG Puccinia_coronata_DQ355451 TAAGTTGGATTGACTTGGTGTAATAATATTTT--AATCATCACATCAAGG Puccinia_graminis_DQ355455_ TAAGTTGGATTGACTTGGTGTAATAAT---TT--TATCATCACATCAAGG Puccinia_coronata_DQ355445 TAAGTTGGATTGACTTGGTGTAATAAT---TT--AATCATCACATCAAGG _Puccinia_coronata_DQ355444 TAAGTTGGATTGACTTGGTGTAATAAT---TT--CATCATCACATCAAGG Puccinia_coronata_DQ414723 AAAGTAGTCAAATACTTGCCATCTTTTGAAAGGGGAGAGAGGGACTTCTA _Puccinia_coronata_DQ414724 AAAGTAGTCAAATACTTGCCATCTTTTGAAAGGGGAGAGAGGGACTTCTA Puccinia_coronata_DQ355449 AAAGTAGTCAAATACTTGCCATCTTTTGAAAGGGGAGAGAGGGACTTCTA Puccinia_coronata_DQ355452 AAAGTAGTCAAATACTTGCCATCTTTTGAAAGGGGAGAGAGGGACTTCTA Puccinia_coronata_DQ355442 AAAGTAGC--AATACTTGCCATCTTTTGAAAGG----AGGGACTCCTAAA _Puccinia_coronata_DQ355441 AAAGTAGC--AATACTTGCCATCTTTTGAAAGG----AGGGACTCCTAAA _Puccinia_coronata_f._sp._avenae_AY114290 AAAGTAGC--AATACTTGCCATCTTTTGAAAGG----AGGGACTCCTAAA Puccinia_sp._Alder_Buckthorn_CT AAAGTAGC--AATACTTGCCATCTTTTGAAAGG----AGGGACTCCTAAA _Puccinia_graminis_f._sp._tritici_AY114289 AAAGTAGTCAAACACTTGCCATCTTTTTTGT-AACA-AGAGACTCCTAAA Puccinia_coronata_DQ355443 AAAGTAGC--AATACTTGCCATCTTTTGAAAGG----AGGGACTCCTAAA Puccinia_coronata_DQ355447 AAAGTAGTTAAATACTTGCCATCTTTTGAAAGGGGAGAGGGACTTCTAAA Puccinia_coronata_DQ355448 AAAGTAGTTAAATACTTGCCATCTTTTGAAAGGGGAGAGGGACTTCTAAA Puccinia_coronata_DQ355446_ AAAGTAGTTAAATACTTGCCATCTTTTGAAAGGGGAGAGGGACTTCTAAA Puccinia_coronata_DQ355450 AAAGTAGTCAAATACTTGCCATCTTTTGAAAGGGGAGAGAGGGACTTCTA Puccinia_coronata_DQ355451 AAAGTAGTCAAATACTTGCCATCTTTTGAAAGGGGAGAGAGGGACTTCTA Puccinia_graminis_DQ355455_ AAAGTAGTAAAACACTTGCCATCTTGTTTGTTAATA-AGAGACTCCTAAA Puccinia_coronata_DQ355445 AAAGTAGTTAAATACTTGCCATCTTTTGAAAGGGGAGAGGGACTTCTAAA _Puccinia_coronata_DQ355444 AAAGTAGC--AATACTTGCCATCTTTTGAAAGG----AGGGACTCCTAAA Puccinia_coronata_DQ414723 AAAAAAAACCCCATACATACAATATTTAAGACCTCAAATCAGGTGGGACT _Puccinia_coronata_DQ414724 AAAAAAA-CCCCATACATACAATATTTAAGACCTCAAATCAGGTGGGACT Puccinia_coronata_DQ355449 AAA-----CCCCAT-TTTAAATATTTTAAGACCTCAAATCAGGTGGGACT Puccinia_coronata_DQ355452 AAAAAAA-CCCCATACATACAATATTTAAGACCTCAAATCAGGTGGGACT Puccinia_coronata_DQ355442 AAA-----CCCCTCATAACCTTTTTTTAAGACCTCAAATCAGGTGGGACT _Puccinia_coronata_DQ355441 AAA-----CCCCTCATAACCTTTTTTTAAGACCTCAAATCAGGTGGGACT _Puccinia_coronata_f._sp._avenae_AY114290 AAA-----CCCCTCATAACCTTTTTTTAAGACCTCAAATCAGGTGGGACT Puccinia_sp._Alder_Buckthorn_CT AAA-----CCCCTCATAACACTTTTTTAAGACCTCAAATCAGGTGGGACT _Puccinia_graminis_f._sp._tritici_AY114289 A-------CCCAATATCTATTTTTTTTAAGACCTCAAATCAGGTGGGACT Puccinia_coronata_DQ355443 AAAA----CCCCTCATAACACTTTTTTAAGACCTCAAATCAGGTGGGACT Puccinia_coronata_DQ355447 AAA-----CCCCAT-TAAATATTTTTTAAGACCTCAAATCAGGTGGGACT Puccinia_coronata_DQ355448 AAA-----CCCCAT-TAAATATTTTTTAAGACCTCAAATCAGGTGGGACT Puccinia_coronata_DQ355446_ AAA-----CCCCAT-TAAATATTTTTTAAGACCTCAAATCAGGTGGGACT Puccinia_coronata_DQ355450 AAA-----CCCCAT-TTTAAATATTTTAAGACCTCAAATCAGGTGGGACT Puccinia_coronata_DQ355451 AAA-----CCCCAT-TTTAAATATTTTAAGACCTCAAATCAGGTGGGACT Puccinia_graminis_DQ355455_ A-------CCCAATATCT--TATTTTTAAGACCTCAAATCAGGTGGGACT Puccinia_coronata_DQ355445 AAA-----CCCCAT-TAAATATTTTTTAAGACCTCAAATCAGGTGGGACT _Puccinia_coronata_DQ355444 AAAA----CCCCTCATAACACTTTTTTAAGACCTCAAATCAGGTGGGACT Puccinia_coronata_DQ414723 ACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACTAACAAG _Puccinia_coronata_DQ414724 ACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACTAACAAG Puccinia_coronata_DQ355449 ACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACTAACAAG Puccinia_coronata_DQ355452 ACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACTAACAAG Puccinia_coronata_DQ355442 ACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACTAACAAG _Puccinia_coronata_DQ355441 ACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACTAACAAG _Puccinia_coronata_f._sp._avenae_AY114290 ACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACTAACAAG Puccinia_sp._Alder_Buckthorn_CT ACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACTAACAAG _Puccinia_graminis_f._sp._tritici_AY114289 ACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACTAACAAG Puccinia_coronata_DQ355443 ACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACTAACAAG Puccinia_coronata_DQ355447 ACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACTAACAAG Puccinia_coronata_DQ355448 ACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACTAACAAG Puccinia_coronata_DQ355446_ ACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACTAACAAG Puccinia_coronata_DQ355450 ACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACTAACAAG Puccinia_coronata_DQ355451 ACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACTAACAAG Puccinia_graminis_DQ355455_ ACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACTAACAAG Puccinia_coronata_DQ355445 ACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACTAACAAG _Puccinia_coronata_DQ355444 ACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACTAACAAG Puccinia_coronata_DQ414723 GATTCCCCC-AGTAACGGCGAGTGAAGAGGGAAAAGCCCAAATTTGTAAT _Puccinia_coronata_DQ414724 GATTCCCCC-AGTAACGGCGAGTGAAGAGGGAAAAGCCCAAATTTGTAAT Puccinia_coronata_DQ355449 GATTCCCCC-AGTAACGGCGAGTGAAGAGGGAAAAGCCCAAATTTGTAAT Puccinia_coronata_DQ355452 GATTCCCCCCAGTAACGGCGAGTGAAGAGGGAAAAGCCCAAATTTGTAAT Puccinia_coronata_DQ355442 GATTCCCCC-AGTAACGGCGAGTGAAGAGGGAAAAGCCCAAATTTGTAAT _Puccinia_coronata_DQ355441 GATTCCCCC-AGTAACGGCGAGTGAAGAGGGAAAAGCCCAAATTTGTAAT _Puccinia_coronata_f._sp._avenae_AY114290 GATTCCCCC-AGTAACGGCGAGTGAAGAGGGAAAAGCCCAAATTTGTAAT Puccinia_sp._Alder_Buckthorn_CT GATTCCCCC-AGTAACGGCGAGTGAAGAGGGAAAAGCCCAAATTTGTAAT _Puccinia_graminis_f._sp._tritici_AY114289 GATTCCC-T-AGTAACGGCGAGTGAAGAGGGAAAAGCCCAAATTTGTAAT Puccinia_coronata_DQ355443 GATTCCCCC-AGTAACGGCGAGTGAAGAGGGAAAAGCCCAAATTTGTAAT Puccinia_coronata_DQ355447 GATTCCCCC-AGTAACGGCGAGTGAAGAGGGAAAAGCCCAAATTTGTAAT Puccinia_coronata_DQ355448 GATTCCCCC-AGTAACGGCGAGTGAAGAGGGAAAAGCCCAAATTTGTAAT Puccinia_coronata_DQ355446_ GATTCCCCC-AGTAACGGCGAGTGAAGAGGGAAAAGCCCAAATTTGTAAT Puccinia_coronata_DQ355450 GATTCCCCCCAGTAACGGCGAGTGAAGAGGGAAAAGCCCAAATTTGTAAT Puccinia_coronata_DQ355451 GATTCCCCC-AGTAACGGCGAGTGAAGAGGGAAAAGCCCAAATTTGTAAT Puccinia_graminis_DQ355455_ GATTCCCCT-AGTAACGGCGAGTGAAGAGGGAAAAGCCCAAATTTGTAAT Puccinia_coronata_DQ355445 GATTCCCCC-AGTAACGGCGAGTGAAGAGGGAAAAGCCCAAATTTGTAAT _Puccinia_coronata_DQ355444 GATTCCCCC-AGTAACGGCGAGTGAAGAGGGAAAAGCCCAAATTTGTAAT Puccinia_coronata_DQ414723 CTGGCTCTTTTAGAGTCCGAGTTGTAATTTTGAGAACTGTTTTCAGTGCT _Puccinia_coronata_DQ414724 CTGGCTCTTTTAGAGTCCGAGTTGTAATTTTGAGAACTGTTTTCAGTGCT Puccinia_coronata_DQ355449 CTGGCTCTTTCAGAGTCCGAGTTGTAATTTTGAGAACTGTTTTCAGTGCT Puccinia_coronata_DQ355452 CTGGCTCTTTTAGAGTCCGAGTTGTAATTTTGAGAACTGTTTTCAGTGCT Puccinia_coronata_DQ355442 CTGGCTCTTTCAGAGTCCGAGTTGTAATTTTGAGAACTGTTTTCAGTGCT _Puccinia_coronata_DQ355441 CTGGCTCTTTCAGAGTCCGAGTTGTAATTTTGAGAACTGTTTTCAGTGCT _Puccinia_coronata_f._sp._avenae_AY114290 CTGGCTCTTTCAGAGTCCGAGTTGTAATTTTGAGAACTGTTTTCAGTGCT Puccinia_sp._Alder_Buckthorn_CT CTGGCTCTTTCAGAGTCCGAGTTGTAATTTTGAGAACTGTTTTCAGTGCT _Puccinia_graminis_f._sp._tritici_AY114289 CTGGCTCTTTCAGAGTCCGAGTTGTAATTTTAAGAACTGTTTTCAGTGCT Puccinia_coronata_DQ355443 CTGGCTCTTTCAGAGTCCGAGTTGTAATTTTGAGAACTGTTTTCAGTGCT Puccinia_coronata_DQ355447 CTGGCTCTTTCAGAGTCTGAGTTGTAATTTTGAGAACTGTTTTCAGTGCT Puccinia_coronata_DQ355448 CTGGCTCTTTCAGAGTCCGAGTTGTAATTTTGAGAACTGTTTTCAGTGCT Puccinia_coronata_DQ355446_ CTGGCTCTTTCAGAGTCCGAGTTGTAATTTTGAGAACTGTTTTCAGTGCT Puccinia_coronata_DQ355450 CTGGCTCTTTCAGAGTCCGAGTTGTAATTTTGAGAACTGTTTTCAGTGCT Puccinia_coronata_DQ355451 CTGGCTCTTTCAGAGTCCGAGTTGTAATTTTGAGAACTGTTTTCAGTGCT Puccinia_graminis_DQ355455_ CTGGCTCTTTCAGAGTCCGAGTTGTAATTTTAAGAACTGTTTTCAGTGCT Puccinia_coronata_DQ355445 CTGGCTCTTTCAGAGTCTGAGTTGTAATTTTGAGAACTGTTTTCAGTGCT _Puccinia_coronata_DQ355444 CTGGCTCTTTCAGAGTCCGAGTTGTAATTTTGAGAACTGTTTTCAGTGCT Puccinia_coronata_DQ414723 GGACCATATATAAGTCTGTTGAAAAGCAGCATCATTGAGGGTGATAATCC _Puccinia_coronata_DQ414724 GGACCATATATAAGTCTGTTGAAAAGCAGCATCATTGAGGGTGATAATCC Puccinia_coronata_DQ355449 GGACCATATATAAGTCTGTTGAAAAGCAGCATCATTGAGGGTGATAATCC Puccinia_coronata_DQ355452 GGACCATATATAAGTCTGTTGAAAAGCAGCATCATTGAGGGTGATAATCC Puccinia_coronata_DQ355442 GGACCATATATAAGTCTGTTGAAAAGCAGCATCATTGAGGGTGATAATCC _Puccinia_coronata_DQ355441 GGACCATATATAAGTCTGTTGAAAAGCAGCATCATTGAGGGTGATAATCC _Puccinia_coronata_f._sp._avenae_AY114290 GGACCATATATAAGTCTGTTGAAAAGCAGCATCATTGAGGGTGATAATCC Puccinia_sp._Alder_Buckthorn_CT GGACCATATATAAGTCTGTTGAAAAGCAGCATCATTGAGGGTGATAATCC _Puccinia_graminis_f._sp._tritici_AY114289 GGACCATGTATAAGTCTGTTGAAAAGCAGCATCATTGAGGGTGATAATCC Puccinia_coronata_DQ355443 GGACCATATATAAGTCTGTTGAAAAGCAGCATCATTGAGGGTGATAATCC Puccinia_coronata_DQ355447 GGACCATATATAAGTCTGTTGAAAAGCAGCATCATTGAGGGTGATAATCC Puccinia_coronata_DQ355448 GGACCATATATAAGTCTGTTGAAAGGCAGCATCATTGAGGGTGATAATCC Puccinia_coronata_DQ355446_ GGACCATATATAAGTCTGTTGAAAAGCAGCATCATTGAGGGTGATAATCC Puccinia_coronata_DQ355450 GGACCATATATAAGTCTGTTGAAAAGCAGCATCATTGAGGGTGATAATCC Puccinia_coronata_DQ355451 GGACCATATATAAGTCTGTTGAAAAGCAGCATCATTGAGGGTGATAATCC Puccinia_graminis_DQ355455_ GGACCATGTATAAGTCTGTTGAAAAGCAGCATCATTGAGGGTGATAATCC Puccinia_coronata_DQ355445 GGACCATATATAAGTCTGTTGAAARGCAGCATCATTGAGGGTGATAATCC _Puccinia_coronata_DQ355444 GGACCATATATAAGTCTGTTGAAAAGCAGCATCATTGAGGGTGATAATCC Puccinia_coronata_DQ414723 CGTTTATGATATGGA-CTCCCAGTGCAATATGATACAGTCTCTAAGAGTC _Puccinia_coronata_DQ414724 CGTTTATGATATGGA-CTCCCAGTGCAATATGATACAGTCTCTAAGAGTC Puccinia_coronata_DQ355449 CGTTTATGATATGGA-CTCCCAGTGCAATATGATACAGTCTCTAAGAGTC Puccinia_coronata_DQ355452 CGTTTATGATATGGA-CTCCCAGTGCAATATGATACAGTCTCTAAGAGTC Puccinia_coronata_DQ355442 CGTTTATGATATGGA-CTCCCAGTGCAATATGATACAGTCTCTAAGAGTC _Puccinia_coronata_DQ355441 CGTTTATGATATGGA-CTCCCAGTGCAATATGATACAGTCTCTAAGAGTC _Puccinia_coronata_f._sp._avenae_AY114290 CGTTTATGATATGGA-CTCCCAGTGCAATATGATACAGTCTCTAAGAGTC Puccinia_sp._Alder_Buckthorn_CT CGTTTATGATATGGA-CTCCCAGTGCAATATGATACAGTCTCTAAGAGTC _Puccinia_graminis_f._sp._tritici_AY114289 CGTTTATGATATGGA-CTACCAGTGCATTATGATACAGTCTCTAAGAGTC Puccinia_coronata_DQ355443 CGTTTATGATATGGA-CTCCCAGTGCAATATGATACAGTCTCTAAGAGTC Puccinia_coronata_DQ355447 CGTTTATGATATGGA-CTCCCAGTGCAATATGATACAGTCTCTAAGAGTC Puccinia_coronata_DQ355448 CGTTTATGATATGGA-CTCCCAGTGCAATATGATACAGTCTCTAAGAGTC Puccinia_coronata_DQ355446_ CGTTTATGATATGGA-CTCCCAGTGCAATATGATACAGTCTCTAAGAGTC Puccinia_coronata_DQ355450 CGTTTATGATATGGAACTCCCAGTGCAATATGATACAGTCTCTAAGAGTC Puccinia_coronata_DQ355451 CGTTTATGATATGGA-CTCCCAGTGCAATATGATACAGTCTCTAAGAGTC Puccinia_graminis_DQ355455_ CGTTTATGATATGGA-CTACCAGTGCATTATGATACAGTCTCTAAGAGTC Puccinia_coronata_DQ355445 CGTTTATGATATGGA-CTCCCAGTGCAATATGATACAGTCTCTAAGAGTC _Puccinia_coronata_DQ355444 CGTTTATGATATGGA-CTCCCAGTGCAATATGATACAGTCTCTAAGAGTC Puccinia_coronata_DQ414723 GAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGGC _Puccinia_coronata_DQ414724 GAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGGC Puccinia_coronata_DQ355449 GAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGGC Puccinia_coronata_DQ355452 GAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGGC Puccinia_coronata_DQ355442 GAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGGC _Puccinia_coronata_DQ355441 GAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGGC _Puccinia_coronata_f._sp._avenae_AY114290 GAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGGC Puccinia_sp._Alder_Buckthorn_CT GAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGGC _Puccinia_graminis_f._sp._tritici_AY114289 GAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGGC Puccinia_coronata_DQ355443 GAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGGC Puccinia_coronata_DQ355447 GAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGGC Puccinia_coronata_DQ355448 GAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGGC Puccinia_coronata_DQ355446_ GAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGGC Puccinia_coronata_DQ355450 AAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGGC Puccinia_coronata_DQ355451 GAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGGC Puccinia_graminis_DQ355455_ GAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGGC Puccinia_coronata_DQ355445 GAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGGC _Puccinia_coronata_DQ355444 GAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGGC Puccinia_coronata_DQ414723 TAAATATAGGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATG _Puccinia_coronata_DQ414724 TAAATATAGGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATG Puccinia_coronata_DQ355449 TAAATATAGGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATG Puccinia_coronata_DQ355452 TAAATATAGGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATG Puccinia_coronata_DQ355442 TAAATATAGGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATG _Puccinia_coronata_DQ355441 TAAATATAGGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATG _Puccinia_coronata_f._sp._avenae_AY114290 TAAATATAGGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATG Puccinia_sp._Alder_Buckthorn_CT TAAATATAGGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATG _Puccinia_graminis_f._sp._tritici_AY114289 TAAATATAGGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATG Puccinia_coronata_DQ355443 TAAATATAGGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATG Puccinia_coronata_DQ355447 TAAATATAGGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATG Puccinia_coronata_DQ355448 TAAATATAGGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATG Puccinia_coronata_DQ355446_ TAAATATAGGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATG Puccinia_coronata_DQ355450 TAAATATAGGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATG Puccinia_coronata_DQ355451 TAAATATAGGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATG Puccinia_graminis_DQ355455_ TAAATATAGGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATG Puccinia_coronata_DQ355445 TAAATATAGGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATG _Puccinia_coronata_DQ355444 TAAATATAGGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATG Puccinia_coronata_DQ414723 AAAAGAACTTTGGAAAGAGAGTTAACAGTACGTGAAATTGTTAAAAGGGA _Puccinia_coronata_DQ414724 AAAAGAACTTTGGAAAGAGAGTTAACAGTACGTGAAATTGTTAAAAGGGA Puccinia_coronata_DQ355449 AAAAGAACTTTGGAAAGAGAGTTAACAGTACGTGAAATTGTTAAAAGGGA Puccinia_coronata_DQ355452 AAAAGAACTTTGGAAAGAGAGTTAACAGTACGTGAAATTGTTAAAAGGGA Puccinia_coronata_DQ355442 AAAAGAACTTTGGAAAGAGAGTTAACAGTACGTGAAATTGTTAAAAGGGA _Puccinia_coronata_DQ355441 AAAAGAACTTTGGAAAGAGAGTTAACAGTACGTGAAATTGTTAAAAGGGA _Puccinia_coronata_f._sp._avenae_AY114290 AAAAGAACTTTGGAAAGAGAGTTAACAGTACGTGAAATTGTTAAAAGGGA Puccinia_sp._Alder_Buckthorn_CT AAAAGAACTTTGGAAAGAGAGTTAACAGTACGTGAAATTGTTAAAAGGGA _Puccinia_graminis_f._sp._tritici_AY114289 AAAAGAACTTTGGAAAGAGAGTTAACAGTACGTGAAATTGTTAAAAGGGA Puccinia_coronata_DQ355443 AAAAGAACTTTGGAAAGAGAGTTAACAGTACGTGAAATTGTTAAAAGGGA Puccinia_coronata_DQ355447 AAAAGAACTTTGGAAAGAGAGTTAACAGTACGTGAAATTGTTAAAAGGGA Puccinia_coronata_DQ355448 AAAAGAACTTTGGAAAGAGAGTTAACAGTACGTGAAATTGTTAAAAGGGA Puccinia_coronata_DQ355446_ AAAAGAACTTTGGAAAGAGAGTTAACAGTACGTGAAATTGTTAAAAGGGA Puccinia_coronata_DQ355450 AAAAGAACTTTGGAAAGAGAGTTAACAGTACGTGAAATTGTTAAAAGGGA Puccinia_coronata_DQ355451 AGAAGAACTTTGGAAAGAGAGTTAACAGTACGTGAAATTGTTAAAAGGGA Puccinia_graminis_DQ355455_ AAAAGAACTTTGGAAAGAGAGTTAACAGTACGTGAAATTGTTAAAAGGGA Puccinia_coronata_DQ355445 AAAAGAACTTTGGAAAGAGAGTTAACAGTACGTGAAATTGTTAAAAGGGA _Puccinia_coronata_DQ355444 AAAAGAACTTTGGAAAGAGAGTTAACAGTACGTGAAATTGTTAAAAGGGA Puccinia_coronata_DQ414723 AACACTTGAAGTTAGACTTGTTATTATTAGTTCAACCTTTT-CTAAAGGG _Puccinia_coronata_DQ414724 AACACTTGAAGTTAGACTTGTTATTATTAGTTCAACCTTTT-CTAAAGGG Puccinia_coronata_DQ355449 AACACTTGAAGTTAGACTTGTTATTATTAGTTCAACCTTTT-CTGAAGGG Puccinia_coronata_DQ355452 AACACTTGAAGTTAGACTTGTTATTATTAGTTCAACCTTTT-CTAAAGGG Puccinia_coronata_DQ355442 AGCACTTGAAGTTAGACTTGTTATTATTAGTTCAACCTTTT-CTTAAGGG _Puccinia_coronata_DQ355441 AACACTTGAAGTTAGACTTGTTATTATTAGTTCAACCTTTT-CTTAAGGG _Puccinia_coronata_f._sp._avenae_AY114290 AACACTTGAAGTTAGACTTGTTATTATTAGTTCAACCTTTT-CTTAAGGG Puccinia_sp._Alder_Buckthorn_CT AACACTTGAAGTTAGACTTGTTATTATTAGTTCAACCTTTT-CTTAAGGG _Puccinia_graminis_f._sp._tritici_AY114289 AACACTTGAAGTTAGACTTGTTATTATTAGTTCAACCTTTTTATTAAGGG Puccinia_coronata_DQ355443 AACACTTGAAGTTAGACTTGTTATTATTAGTTCAACCTTTT-CTTAAGGG Puccinia_coronata_DQ355447 AACACTTGAAGTTAGACTTGTTATTATTAGTTCAACCTTTTTCTGAAGGG Puccinia_coronata_DQ355448 AACACTTGAAGTTAGACTTGTTATTATTAGTTCAACCTTTTTCTGAAGGG Puccinia_coronata_DQ355446_ AACACTTGAAGTTAGACTTGTTATTATTAGTTCAACCTTTTTCTGAAGGG Puccinia_coronata_DQ355450 AACACTTGAAGTTAGACTTGTTATTATTAGTTCAACCTTTT-CTGAAGGG Puccinia_coronata_DQ355451 AACACTTGAAGTTAGACTTGTTATTATTAGTTCAACCTTTT-CTGAAGGG Puccinia_graminis_DQ355455_ AACACTTGAAGTTAGACTTGTTATTATTAGTTCAACCTTTTTATTAAGGG Puccinia_coronata_DQ355445 AACACTTGAAGTTAGACTTGTTATTATTAGTTCAACCTTTTTCTGAAGGG _Puccinia_coronata_DQ355444 AACACTTGAAGTTAGACTTGTTATTATTAGTTCAACCTTTT-CTTAAGGG Puccinia_coronata_DQ414723 AGTATTCTAATGATTAACAGACCAACATCAATTTTTGAGTATTGGAGAAG _Puccinia_coronata_DQ414724 AGTATTCTAATGATTAACAGACCAACATCAATTTTTGAGTATTGGAGAAG Puccinia_coronata_DQ355449 AGTATTCTAATGATTAACAGACCAACATCAATTTTTGAGTGTTGGAGAAG Puccinia_coronata_DQ355452 AGTATTCTAATGATTAACAGACCAACATCAATTTTTGAGTATTGGAGAAG Puccinia_coronata_DQ355442 AGTATTCTAATGATTAACAGACCAACATCAATTTTTGAGTGTTGGAGAAG _Puccinia_coronata_DQ355441 AGTATTCTAATGATTAACAGACCAACATCAATTTTTGAGTGTTGGAGAAG _Puccinia_coronata_f._sp._avenae_AY114290 AGTATTCTAATGATTAACAGACCAACATCAATTTTTGAGTGTTGGAGAAG Puccinia_sp._Alder_Buckthorn_CT AGTATTCTAATGATTAACAGACCAACATCAATTTTTGAGTGTTGGAGAAG _Puccinia_graminis_f._sp._tritici_AY114289 AGTATTCTAATGATTAACAGACCAACATCAATTTTTGAGTGTTGGAGAAG Puccinia_coronata_DQ355443 AGTATTCTAATGATTAACAGACCAACATCAATTTTTGAGTGTTGGAGAAG Puccinia_coronata_DQ355447 AGTATTCTAATGATTAACAGACCAACATCAATTTTTGAGTGTTGGAGAAG Puccinia_coronata_DQ355448 AGTATTCTAATGATTAACAGACCAACATCAATTTTTGAGTGTTGGAGAAG Puccinia_coronata_DQ355446_ AGTATTCTAATGATTAACAGACCAACATCAATTTTTGAGTGTTGGAGAAG Puccinia_coronata_DQ355450 AGTATTCTAATGATTAACAGACCAACATCAATTTTTGAGTGTTGGAGAAG Puccinia_coronata_DQ355451 AGTATTCTAATGATTAACAGACCAACATCAATTTTTGAGTGTTGGAGAAG Puccinia_graminis_DQ355455_ AGTATTCTAATGATTAACAGACCAACATCAATTTTTGAGTGTTGGAGAAG Puccinia_coronata_DQ355445 AGTATTCTAATGATTAACAGACCAACATCAATTTTTGAGTGTTGGAGAAG _Puccinia_coronata_DQ355444 AGTATTCTAATGATTAACAGACCAACATCAATTTTTGAGTGTTGGAGAAG Puccinia_coronata_DQ414723 GGTTTAAGGAAATGTAGCAGTCTTTGGCTGTGTTATAGTCCTGAGCTTTG _Puccinia_coronata_DQ414724 GGTTTAAGGAAATGTAGCAGTCTTTGGCTGTGTTATAGTCCTGAGCTTTG Puccinia_coronata_DQ355449 GGTTTAAGGAAATGTAGCAGTCTTTGGCTGTGTTATAGTCCTGAGCTTTG Puccinia_coronata_DQ355452 GGTTTAAGGAAATGTAGCAGTCTTTGGCTGTGTTATAGTCCTGAGCTTTG Puccinia_coronata_DQ355442 GGTTTAAGGAAATGTAGCAGTCTCTGGCTGTGTTATAGTCCTGAACTTTG _Puccinia_coronata_DQ355441 GGTTTAAGGAAATGTAGCAGTCTCTGGCTGTGTTATAGTCCTGAACTTTG _Puccinia_coronata_f._sp._avenae_AY114290 GGTTTAAGGAAATGTAGCAGTCTCTGGCTGTGTTATAGTCCTGAACTTTG Puccinia_sp._Alder_Buckthorn_CT GGTTTAAGGAAATGTAGCAGTCTCTGGCTGTGTTATAGTCCTGAACTTTG _Puccinia_graminis_f._sp._tritici_AY114289 GGTTTAAGGAAATGTAGCAGTCTTTGGCTGTGTTATAGTCCTGAGCTTTG Puccinia_coronata_DQ355443 GGTTTAAGGAAATGTAGCAGTCTCTGGCTGTGTTATAGTCCTGAACTTTG Puccinia_coronata_DQ355447 GGTTTAAGGAAATGTAGCAGTCTTTGGCTGTGTTATAGTCCTGAGCTTTG Puccinia_coronata_DQ355448 GGTTTAAGGAAATGTAGCAGTCTTTGGCTGTGTTATAGTCCTGAGCTTTG Puccinia_coronata_DQ355446_ GGTTTAAGGAAATGTAGCAGTCTTTGGCTGTGTTATAGTCCTGAGCTTTG Puccinia_coronata_DQ355450 GGTTTAAGGAAATGTAGCAGTCTTTGGCTGTGTTATAGTCCTGAGCTTTG Puccinia_coronata_DQ355451 GGTTTAAGGAAATGTAGCAGTCTTTGGCTGTGTTATAATCCTGAGCTTTG Puccinia_graminis_DQ355455_ GGTTTAAGGAAATGTAGCAGTCTTTGGCTGTGTTATAGTCCTGAGCTTTG Puccinia_coronata_DQ355445 GGTTTAAGGAAATGTAGCAGTCTTTGGCTGTGTTATAGTCCTGAGCTTTG _Puccinia_coronata_DQ355444 GGTTTAAGGAAATGTAGCAGTCTCTGGCTGTGTTATAGTCCTGAACTTTG Puccinia_coronata_DQ414723 ATACAATG----- _Puccinia_coronata_DQ414724 ATACAATGC---- Puccinia_coronata_DQ355449 ATACAATGCTTAA Puccinia_coronata_DQ355452 ATACAATGCTTAA Puccinia_coronata_DQ355442 ATACAATGCTTAA _Puccinia_coronata_DQ355441 ATACAATGCTTAA _Puccinia_coronata_f._sp._avenae_AY114290 ATACAATGCTTAA Puccinia_sp._Alder_Buckthorn_CT ATACAATGCTTAA _Puccinia_graminis_f._sp._tritici_AY114289 ATACAATGCTTAA Puccinia_coronata_DQ355443 ATACAATGCTTAA Puccinia_coronata_DQ355447 ATACAATGCTTAA Puccinia_coronata_DQ355448 ATACAATGCTTAA Puccinia_coronata_DQ355446_ ATACAATGCTTAA Puccinia_coronata_DQ355450 ATACAATGCTTAA Puccinia_coronata_DQ355451 ATACAATGCTTAA Puccinia_graminis_DQ355455_ ATACAATGCTTAA Puccinia_coronata_DQ355445 ATACAATGCTTAA _Puccinia_coronata_DQ355444 ATACAATGCTTAA ; END; BEGIN PAUP; factory; set criterion = parsimony; END; BEGIN PAUP; outgroup DQ355455.1_Puccinia_graminis_isolate_HSZ0804; set root = outgroup; set outroot = paraphyl; set maxtrees = 10000 increase = auto autoclose = no torder = right tcompress = yes taxlabels = full storebrlens = yes storetreewts = yes; END; BEGIN PAUP; log file = Pc_Szabob_ITS_MP_Nov9_1.log; set autoclose = yes; hsearch start = stepwise addseq = random nreps = 10000 savereps = yes randomize = addseq rstatus = yes hold = 1 swap = tbr multrees = yes; savetrees file = Pc_Szabob_ITS_MP_Nov9.all.tre brlen = yes; filter best = yes permdel = yes; savetrees file = Pc_Szabob_ITS_MP_Nov9.best.tre brlen = yes; pscores / tl ci ri rc; log stop; END; begin paup; set storetreewts = yes; bootstrap nreps = 1000 treefile = Pc_Szabob_ITS_MP_Nov9.tre replace = no brlen = yes / start = stepwise addseq = random nreps = 100 savereps = no randomize = addseq hold = 1 swap = tbr multrees = yes; END; begin paup; gettrees allblocks = yes duptrees = keep storetreewts = yes storebrlens = yes mode = 7 file = Pc_Szabob_ITS_MP_Nov9.tre; END; begin paup; log file = PPc_Szabob_ITS_MP_Nov9.log; contree / majrule = yes strict = no le50 = yes usetreewts = yes showtree = yes treefile = Pc_Szabob_ITS_MP_Nov9.bootstrap.tre grpfreq = yes; log stop; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 1213; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 1213; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 1213; END; BEGIN TREES; Title 'Szabob_ITS_ML tree'; ID 015ac8e5d6c26; LINK Taxa = Taxa; TRANSLATE [0] 1 Puccinia_coronata_DQ414723, [1] 2 _Puccinia_coronata_DQ414724, [2] 3 Puccinia_coronata_DQ355449, [3] 4 Puccinia_coronata_DQ355452, [4] 5 Puccinia_coronata_DQ355442, [5] 6 _Puccinia_coronata_DQ355441, [6] 7 _Puccinia_coronata_f._sp._avenae_AY114290, [7] 8 Puccinia_sp._Alder_Buckthorn_CT, [8] 9 _Puccinia_graminis_f._sp._tritici_AY114289, [9] 10 Puccinia_coronata_DQ355443, [10] 11 Puccinia_coronata_DQ355447, [11] 12 Puccinia_coronata_DQ355448, [12] 13 Puccinia_coronata_DQ355446_, [13] 14 Puccinia_coronata_DQ355450, [14] 15 Puccinia_coronata_DQ355451, [15] 16 Puccinia_graminis_DQ355455_, [16] 17 Puccinia_coronata_DQ355445, [17] 18 _Puccinia_coronata_DQ355444; TREE 'Szabo_2006_ML_tree' = (((((((1,2),4),(3,14,15)),((11,(13,17)),12)),((5,6,7),(8,(10,18)))),9),16); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1489432127097; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 1571455024901779566; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 9162289674731690489; mqVersion 320; checksumv 0 3 3383794628 null getNumChars 1213 numChars 1213 getNumTaxa 18 numTaxa 18 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 500217.0 sumSquares 4.6116860184277258E18 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 582; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1480 784; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.ManageTrees.ManageTrees; tell It; showTrees 0 #mesquite.lists.TreesList.TreesList; tell It; setTreeBlock 1; getWindow; tell It; newAssistant #mesquite.lists.NumForTreeList.NumForTreeList; tell It; suppress; setValueTask #mesquite.trees.NumberOfTaxa.NumberOfTaxa; desuppress; endTell; newAssistant #mesquite.lists.TreeListRooted.TreeListRooted; newAssistant #mesquite.lists.TreeListPolys.TreeListPolys; newAssistant #mesquite.lists.TreeListPolyAssumption.TreeListPolyAssumption; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 898 712; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TreesList.TreesListWindow.ibeam; endTell; setActive; endTell; showWindow; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #9162289674731690489 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 275; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 898 712; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;