NEXUS [File created by TreeBASE: 1/16/09 15:35:46] [Matrix accession#: M3918] BEGIN TAXA; TITLE M3918; DIMENSIONS NTAX=43; TAXLABELS Paraphaeosphaeria_michotii_AF250829 Paraconiothyrium_cyclothyrioides_AY642529 Phaeosphaeria_nodorum_AF181708 Ophiosphaerella_agrostis_AF191548 Epicoccum_nigrum_AF149926 Cladosporium_herbarum_AF177734 Mycosphaerella_graminicola_AF181692 Mycosphaerella_citri_AF181704 Mycosphaerella_fijiensis_AF181705 Septoria_passerinii_AF181695 Septoria_tritici_AJ300330 Phoma_glomerata_DQ093699 Shiraia_bambusicola_NBRC_30147 Shiraia_bambusicola_NBRC_30312 Shiraia_bambusicola_NBRC_30737 Shiraia_bambusicola_NBRC_30738 Shiraia_bambusicola_NBRC_30739 Shiraia_bambusicola_NBRC_30752 Shiraia_bambusicola_NBRC_30753 Shiraia_bambusicola_NBRC_30754 Shiraia_bambusicola_NBRC_30755 Shiraia_bambusicola_NBRC_30771 Shiraia_bambusicola_NBRC_30772 Shiraia_bambusicola_NBRC_100220 'Shiraia-like fungus JP7' 'Shiraia-like fungus JP93b' 'Shiraia-like fungus JP185' 'Shiraia-like fungus JP151' 'Shiraia-like fungus JP256' Shiraia_bambusicola_JCM1879_AB105798 Shiraia_bambusicola_Ppp2003_AY515304 Shiraia_bambusicola_Pn2003_AY536372 Shiraia_bambusicola_Bd2003_AY536374 Shiraia_bambusicola_Pa2003_AY536373 'Shiraia-like fungus JP93' 'Shiraia-like fungus JP232' Shiraia_sp._ML2004_AY425966 Neophaeosphaeria_barrii_AF466301 Leptosphaeria_maculans_AJ550873 Ampelomyces_humuli_ITS_AF035779 Ampelomyces_quercinus_AF035778 Helminthosporium_solani_AF073912 Lophiostoma_arundinis_AF383952 ; END; BEGIN CHARACTERS; TITLE M3918; DIMENSIONS NCHAR=421; FORMAT DATATYPE = DNA MISSING = ? GAP = - ; MATRIX Paraphaeosphaeria_michotii_AF250829 CATTCCTGCACCCTT?TTTTACGAGCACCTTT?GTTCCTTCGGCGGGGCAACCTGCCGCTGGAACTTAA?TAAAACCTTTTTGCATCT?AGCATTACCTGTTCTGAAAATAATCGTTACAACTTTCAACAATGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGTGGGGCATGCCTGTTCGAGCGTCATCTACACCCTCAAGCTCTGCTTGGTGTTGGGCGTCTGTCCCGCCT?CTGCGCGCGGACTCGCCCCAAATTCATTGGCAGCGGTCTTTGCCTCCTCTC?GCGCAGCACAA?TTGCGTCTGCGAGGGGCGTGGCCCGCATCCACGAAGCA Paraconiothyrium_cyclothyrioides_AY642529 CATGTCTGAATCCTT?TTTTACGAGCACCTTTCGTTCCTTCGGTGGGGCAACCTGCCGTTGGAACTTAT?CAAAACCTTTTTGCATCT?AGCATTACCTGTTCAGAAAACAATCGTTACAACTTTCAACAATGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATCTACACCCTCAAGCTCTGCTTGGTGTTGGGCGTCTGTCCCGCCT?CTGCGCGTGGACTCGCCCCAAATTCATTGGCAGCGGTCTTTGCCTCCTCT??GCGCAGCACA??TTGCG?CTTTAGGGGGTGTGGGCCGCGTCCACGAAGCA Phaeosphaeria_nodorum_AF181708 ?????ATCCACCCTTGTCTTTTGCGTACCCACTGTTTCCTCGGCAGGCTTGCCTGCCGGTTGGACAAATT???AACCTTTTTAATTTTAATCAGCGTCTGAAAAA?CT?TAATAATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTCTGCTTGGTGTTGGGTGTTTGTCCTCTCCCTAGTGTTTGGACTCGCCTTAAAATAATTGGCAGCCAGTGTTTTGGTATTGAAGCGCAGCACAAGTCGCGATTCGTAACAA??ACACTTGCGTCCAC??AAGC Ophiosphaerella_agrostis_AF191548 ??????ATTACCCTTGTTTTTTGAGTACCTA?TGTTTCCTTGGTGGGCTTGCCTGCCAATAGGACAAACTTAAACCTTTTTTAATTTTAATCAGCGTCTGAATAAACTTTAATAATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTACCTTCAAGCTCTGCTTGGTGTTGGGTGTTTGTCCTCTCCATTGCGTTTGGACTCGCCTTAAAGCAATTGGCAGCCAGTGTATTGGTTTT?AAGCGCAGCACATCTTGCGTCTTTTTCCTATAACACTCGCGTCCATTAAGCC Epicoccum_nigrum_AF149926 ????????TACCCATGTCTTTTGAGTACCTT?CGTTTCCTCGGCGGGTCCGCCCGCCGGTTGGACAACATTCAAACCCTTTGCAGTTGAATCAGCGTCTGAAAAAACTT?AATAGTTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTACCTTCAAGCTCTGCTTGGTGTTGGGTGTTTGTCTCGCC?TCCGCGCGCAGACTCGCCTTAAAACAATTGGCAGCCGGCGTATTGATTTCGGAGCGCAGTACATCTCGCGCTTTGCACTCATAACGACGACGTCCAAAAGTAC Cladosporium_herbarum_AF177734 TTATTCATAACCCTTTTTGTCC??GACTCTGTTGCCTCCGGGGCGACCCTGCCGGGCGGCGGGTGGACATCAAACTCTGCGTAACTTT????GCAGTCTGAGTAAATTAATA?AATTAAAACTTTTAACAACGGATCTCTTGGTTCTGGCATCGATGAAAAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCAAATCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTTCGAACGTCATTTTCACCATCAAGCCTCGCTTGGTTTTGGGGGCAA?CGCGG????????TCCGCCGCGTGCCTCAAATCGTCCGGC?TGGGTCTTC?TGTCCCCTAAGCGTTGTGGTATTCGCTAAAGGGTTCGGGAGGCTACGCCGTAAAACAACC Mycosphaerella_graminicola_AF181692 CGACCTCCAACCCTTTGTGAAC?ACATCCCGTTGCTTCGGGGGCGACCC????TGCCGGCCGGAGGACCCCAAAAAAACTGCATCTCT?????GCGTCGGAGTTTATAAATCGAAACAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCCGTTCGAGCGTCATTA?CACCATCCAGCCTCGCTGGGTATTGGGCGTCTTCGCGGGGGATCACTCCCCCGCGCGCCTCAAAGTCTCCGGC?TGAGCGGTCTCGTCTCCCA?GCGTTGTGGACGTCTCGCCGCGGATCACGAGCCCTCACGGCCGTTAAATC Mycosphaerella_citri_AF181704 CGACCTCCAACCCTTTGTGAAC??CAACCTGTTGCTTCGGGGGAGACCCCGCCCGGCGGCCGGAGGCCCTTAACA??TGCGTAACTGT?????TTGTCGGAGTCTTTAAATC?AATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTA?CACCCTCAAGCCTGGCTTGGTATTGGGCGT???CGCGGGC?????CTCGCCCGCGCGCCTTAAAGTCTCCGGC?TGGACCGTCTTGTCCCTAAAGCGTCGTG?AAACCTCGCGGTGGGTTGATGGGCC????GGCCGTTAAATC Mycosphaerella_fijiensis_AF181705 CGACCTCCAACCCTTTGTGAACCACAACTTGTTGCTTCGGGGGCGACCTGCCGCGGCGGCCGGAGG?CCTCTAAA??ACTGCATCTTT?????GCGTCGGAGTTTACAAATC?GAACAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTT?CACCATCAAGCCTGGCTTGGTATTGGGCGT???CGCGG????????TTCTTCGCGCGCCTTAAAGTCTCCGGC?TGAGCTGTC?CGTCTCTAA?GCGTTGTGGTCAATTCGCTTCGGAGCGGGTGGCC??GCGGCCGTTAAATC Septoria_passerinii_AF181695 CGACCTCCAACCCTTTGTGAAC?ACATCCCGTTGCTTCGGGGGCGACCC????TGCCGGCCGGAGGACCTCAAAAA?GCTGCATCTCT?????GCGTCGGAGTTTATAAATCGAAACAAAACTTTCAACAACGGATCTCTTGGTTCAGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCCGTTCGAGCGTCATTA??CACCTCCAGCCTCGCTGGGTATTGGGCGTCTTCGCGGGGGAGCAATCCCCCGCGCGCCTCAAAGTCTCCGGC?TGAGCGGTCTCGTCTCCCA?GCGTTGTGGACGTCTCGCCGCGGATTTCGAGCCCTCACGGCCGTTAAATC Septoria_tritici_AJ300330 CGACCTCCAACCCTTTGTGAAC?ACATCCCGTTGCTTCGGGGGCGACCC????TGCCGGCCGGAGGACCCCAAAAAAACTGCATCTCT?????GCGTCGGAGTTTATAAATCGAAACAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCCGTTCGAGCGTCATTA?CACCATCCAGCCTCGCTGGGTATTGGGCGTCTTCGCGGGGGATCACTCCCCCGCGCGCCTCAAAGTCTCCGGC?TGAGCGGTCTCGTCTCCCA?GCGTTGTGGACGTCTCGCCGCGGATCACGAGCCCTCACGGCCGTTAAATC Phoma_glomerata_DQ093699 ????????TACCCATGTCTTTTGAGTACCTT?CGTTTCCTCGGCGGGTCCGCCCGCCGATTGGACAAT?TT?AAACCATTTGCAGTTGAATCAGCGTCTGAAAAAACTT?AATAGTTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTACCTTCAAGCTCTGCTTGGTGTTGGGTGTTTGTCTCGCC?TCTGCGCGTAGACTCGCCTCAAAACAATTGGCAGCCGGCGTATTGATTTCGGAGCGCAGTACATCTCGCGCTTTGCACTCATAACGACGACGTCCAAAAGTAC Shiraia_bambusicola_NBRC_30147 CCCCAGTCTGCCCATGTCTTTTGCGTACTAAATGTTTCCTCGGCAGGCCTGCCTGCCGGTTGGACACGCTTATACTCTTTGTAATTGCAATCAGCGTCTGAACCAACTATAATATTTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCATGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGAAAACTCAAGCTTTGCTTGGTATTGGGTGGTTGTCCTGTTCTTTGCAACTGGACTCGCCTTAAAGATATTGGCAGCCGGCATTTTGGCCTTGGAGCGCAGCACAATTTGCGGATCCAGGTTGGAGTACTGACGTCCATTTAAGC Shiraia_bambusicola_NBRC_30312 CCCCAGTCTGCCCATGTCTTTTGCGTACTAAATGTTTCCTCGGCAGGCCTGCCTGCCGGTTGGACACGCTTATACTCTTTGTAATTGCAATCAGCGTCTGAACCAACTATAATATTTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCATGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGAAAACTCAAGCTTTGCTTGGTATTGGGTGGTTGTCCTGTTCTTTGCAACTGGACTCGCCTTAAAGATATTGGCAGCCGGCATTTTGGCCTTGGAGCGCAGCACAATTTGCGGATCCAGGTTGGAGTACTGACGTCCATTTAAGC Shiraia_bambusicola_NBRC_30737 ?????GTCTGCCCATGTCTTTTGCGTACTAAATGTTTCCTCGGCAGGCCTGCCTGCCGGTTGGACACGCTTATACTCTTTGTAATTGCAATCAGCGTCTGAACCAACTATAATATTTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCATGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGAAAACTCAAGCTTTGCTTGGTATTGGGTGGTTGTCCTGTTCTTTGCAACTGGACTCGCCTTAAAGATATTGGCAGCCGGCATTTTGGCCTTGGAGCGCAGCACAATTTGCGGATCCAGGTTGGAGTACTGACGTCCATTTAAGC Shiraia_bambusicola_NBRC_30738 ?????GTCTGCCCATGTCTTTTGCGTACTAAATGTTTCCTCGGCAGGCCTGCCTGCCGGTTGGACACGCTTATACTCTTTGTAATTGCAATCAGCGTCTGAACCAACTATAATATTTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCATGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGAAAACTCAAGCTTTGCTTGGTATTGGGTGGTTGTCCTGTTCTTTGCAACTGGACTCGCCTTAAAGATATTGGCAGCCGGCATTTTGGCCTTGGAGCGCAGCACAATTTGCGGATCCAGGTTGGAGTACTGACGTCCATTTAAGC Shiraia_bambusicola_NBRC_30739 CCCCAGTCTGCCCATGTCTTTTGCGTACTAAATGTTTCCTCGGCAGGCCTGCCTGCCGGTTGGACACGCTTATACTCTTTGTAATTGCAATCAGCGTCTGAACCAACTATAATATTTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCATGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGAAAACTCAAGCTTTGCTTGGTATTGGGTGGTTGTCCTGTTCTTTGCAACTGGACTCGCCTTAAAGATATTGGCAGCCGGCATTTTGGCCTTGGAGCGCAGCACAATTTGCGGATCCAGGTTGGAGTACTGACGTCCATTTAAGC Shiraia_bambusicola_NBRC_30752 CCCCAGTCTGCCCATGTCTTTTGCGTACTAAATGTTTCCTCGGCAGGCCTGCCTGCCGGTTGGACACGCTTATACTCTTTGTAATTGCAATCAGCGTCTGAACCAACTATAATATTTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCATGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGAAAACTCAAGCTTTGCTTGGTATTGGGTGGTTGTCCTGTTCTTTGCAACTGGACTCGCCTTAAAGATATTGGCAGCCGGCATTTTGGCCTTGGAGCGCAGCACAATTTGCGGATCCAGGTTGGAGTACTGACGTCCATTTAAGC Shiraia_bambusicola_NBRC_30753 CCCCAGTCTGCCCATGTCTTTTGCGTACTAAATGTTTCCTCGGCAGGCCTGCCTGCCGGTTGGACACGCTTATACTCTTTGTAATTGCAATCAGCGTCTGAACCAACTATAATATTTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCATGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGAAAACTCAAGCTTTGCTTGGTATTGGGTGGTTGTCCTGTTCTTTGCAACTGGACTCGCCTTAAAGATATTGGCAGCCGGCATTTTGGCCTTGGAGCGCAGCACAATTTGCGGATCCAGGTTGGAGTACTGACGTCCATTTAAGC Shiraia_bambusicola_NBRC_30754 CCCCAGTCTCCCCATGTCTTTTGCGTACTAAATGTTTCCTCGGCAGGCCTGCCTGCCGGTTGGACACGCTTATACTCTTTGTAATTGCAATCAGCGTCTGAACCAACTATAATATTTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCATGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGAAAACTCAAGCTTTGCTTGGTATTGGGTGGTTGTCCTGTTCTTTGCAACTGGACTCGCCTTAAAGATATTGGCAGCCGGCATTTTGGCCTTGGAGCGCAGCACAATTTGCGGATCCAGGTTGGAGTACTGACGTCCATTTAAGC Shiraia_bambusicola_NBRC_30755 CCCCAGTCTGCCCATGTCTTTTGCGTACTAAATGTTTCCTCGGCAGGCCTGCCTGCCGGTTGGACACGCTTATACTCTTTGTAATTGCAATCAGCGTCTGAACCAACTATAATATTTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCATGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGAAAACTCAAGCTTTGCTTGGTATTGGGTGGTTGTCCTGTTCTTTGCAACTGGACTCGCCTTAAAGATATTGGCAGCCGGCATTTTGGCCTTGGAGCGCAGCACAATTTGCGGATCCAGGTTGGAGTACTGACGTCCATTTAAGC Shiraia_bambusicola_NBRC_30771 CCCCAGTCTGCCCATGTCTTTTGCGTACTAAATGTTTCCTCGGCAGGCCTGCCTGCCGGTTGGACACGCTTATACTCTTTGTAATTGCAATCAGCGTCTGAACCAACTATAATATTTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCATGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGAAAACTCAAGCTTTGCTTGGTATTGGGTGGTTGTCCTGTTCTTTGCAACTGGACTCGCCTTAAAGATATTGGCAGCCGGCATTTTGGCCTTGGAGCGCAGCACAATTTGCGGATCCAGGTTGGAGTACTGACGTCCATTTAAGC Shiraia_bambusicola_NBRC_30772 ?????GTCTGCCCATGTCTTTTGCGTACTAAATGTTTCCTCGGCAGGCCTGCCTGCCGGTTGGACACGCTTATACTCTTTGTAATTGCAATCAGCGTCTGAACCAACTATAATATTTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCATGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGAAAACTCAAGCTTTGCTTGGTATTGGGTGGTTGTCCTGTTCTTTGCAACTGGACTCGCCTTAAAGATATTGGCAGCCGGCATTTTGGCCTTGGAGCGCAGCACAATTTGCGGATCCAGGTTGGAGTACTGACGTCCATTTAAGC Shiraia_bambusicola_NBRC_100220 CCCCAGTCTGCCCATGTCTTTTGCGTACTAAATGTTTCCTCGGCAGGCCTGCCTGCCGGTTGGACACGCTTATACTCTTTGTAATTGCAATCAGCGTCTGAACCAACTATAATATTTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCATGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGAAAACTCAAGCTTTGCTTGGTATTGGGTGGTTGTCCTGTTCTTTGCAACTGGACTCGCCTTAAAGATATTGGCAGCCGGCATTTTGGCCTTGGAGCGCAGCACAATTTGCGGATCCAGGTTGGAGTACTGACGTCCATTTAAGC 'Shiraia-like fungus JP7' CCCCCGTCTGCCCATGTTTATTGCGTACTACATGTTTCCTCGGCTGGTTCTCCAGCCGATAGGAT?CTCTTAAACTCATTGTAATTGCAATCAGCGTCTGAAAAAATCATAATATTTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTATGCTTGGTGTTGGGTGTTTGTCCTATCCATTGCGACTGGACTCGCCTTAAAGATATTGGCAGCCGGCATTTTGGCCTTGGAGCGCAGCACAATTTGCGAGTCCAAGCCGGAATACTGACGTCCAGATAAGC 'Shiraia-like fungus JP93b' TACCTGTCTGCCCATGTCTTTTGCGTACTACTTGTTTCCTCGGTGGGCTTGCCCGCCGATTGGACACCTTTAAACTCTTTGTAATTGCAATCAGCGTCTGAA??AACTATAATAGTTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGATGGGTGTTTGTCCTGTCCTTTGCGACTGGACTCGCCTTAAAGTTATTGGCAGCCGGCATATAGGCCTTGGAGCGCAGCACAATTTGCG?ATCTAAGCCCTTATACTGGCGTCCATCAAGGC 'Shiraia-like fungus JP185' CTCCCGTCTGCCCATGTCTTTTGCGTACTACATGTTTCCTCGGTGGGCTTGCCTGCCGGATGGACAACAACAAACTCTCTGTAATTGCAATCAGCGTCAGAAA?AACTATAATAGTTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTACCTTCAAGCACTGCTTGGTGTTGGGTGTTTGTCCTGTCCTTCGCGACTGGACTCGCCTTAAAGTTATTGGCAGCCGGCATATTGGCCTTGGAGCGCAGCACATTTTGCG?ATCTAAGCCGCTGTTTCAGCGTCCATTTAAGC 'Shiraia-like fungus JP151' CGCCTGTCTGCCCATGTCTTTTGCGTACTACTTGTTTCCTCGGTGGGCTGCCCTGCCGATTGGACACCTTTAAACTCTTTGTAATTGCAATCAGCGTCTGAA??AACTATAATAGTTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGATGGGCGTTTGTCCAGTTCTTTGCGACTGGACTCGCCTTAAAGTTATTGGGAGCCGGCATATAGGCCTTGGAGCGCAGCACAATTTGCG?ATCTAAGCCTCTATTCTGGGGTCCATTTAAGC 'Shiraia-like fungus JP256' CCCCCGTCTGCCCATGTTTATTGCGTACTACATGTTTCCTCGGCTGGTTCTCCAGCCGATAGGA??CTCTTAAACTCATTGTAATTGCAATCAGCGTCTGAAAAAATCATAATATTTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTATGCTTGGTGTTGGGTGTTTGTCCTATCCATTGCGACTGGACTCGCCTTAAAGATATTGGCAGCCGGCATTTTGGCCTTGGAGCGCAGCACAATTTGCGAGTCCAAGCCGGAATACTGACGTCCAGATAAGC Shiraia_bambusicola_JCM1879_AB105798 CCCCAGTCTGCCCATGTCTTTTGCGTACTAAATGTTTCCTCGGCAGGCCTGCCTGCCGGTTGGACACGCTTATACTCTTTGTAATTGCAATCAGCGTCTGAACCAACTATAATATTTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCATGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGAAAACTCAAGCTTTGCTTGGTATTGGGTGGTTGTCCTGTTCTTTGCAACTGGACTCGCCTTAAAGATATTGGCAGCCGGCATTTTGGCCTTGGAGCGCAGCACAATTTGCGGATCCAGGTTGGAGTACTGACGTCCATTTAAGC Shiraia_bambusicola_Ppp2003_AY515304 CCCCAGTCTGCCCATGTCTTTTGCGTACTAAATGTTTCCTCGGCAGGCCTGCCTGCCGGTTGGACACGCTTATACTCTTTGTAATTGCAATCAGCGTCTGAACCAACTATAATATTTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCATGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGAAAACTCAAGCTTTGCTTGGTATTGGGTGGTTGTCCTGTTCTTTGCAACTGGACTCGCCTTAAAGATATTGGCAGCCGGCATTTTGGCCTTGGAGCGCAGCACAATTTGCGGATCCAGGTTGGAGTACTGACGTCCATTTAAGC Shiraia_bambusicola_Pn2003_AY536372 CCCCAGTCTGCCCATGTCTTTTGCGTACTAAATGTTTCCTCGGCAGGCCTGCCTGCCGGTTGGACACGCTTATACTCTTTGTAATTGCAATCAGCGTCTGAACCAACTATAATATTTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCATGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGAAAACTCAAGCTTTGCTTGGTATTGGGTGGTTGTCCTGTTCTTTGCAACTGGACTCGCCTTAAAGATATTGGCAGCCGGCATTTTGGCCTTGGAGCGCAGCACAATTTGCGGATCCAGGTTGGAGTACTGACGTCCATTTAAGC Shiraia_bambusicola_Bd2003_AY536374 CCCCAGTCTGCCCATGTCTTTTGCGTACTAAATGTTTCCTCGGCAGGCCTGCCTGCCGGTTGGACACGCTTATACTCTTTGTAATTGCAATCAGCGTCTGAACCAACTATAATATTTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCATGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGAAAACTCAAGCTTTGCTTGGTATTGGGTGGTTGTCCTGTTCTTTGCAACTGGACTCGCCTTAAAGATATTGGCAGCCGGCATTTTGGCCTTGGAGCGCAGCACAATTTGCGGATCCAGGTTGGAGTACTGACGTCCATTTAAGC Shiraia_bambusicola_Pa2003_AY536373 CCCCAGTCTGCCCATGTCTTTTGCGTACTAAATGTTTCCTCGGCAGGCCTGCCTGCCGGTTGGACACGCTTATACTCTTTGTAATTGCAATCAGCGTCTGAACCAACTATAATATTTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCATGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGAAAACTCAAGCTTTGCTTGGTATTGGGTGGTTGTCCTGTTCTTTGCAACTGGACTCGCCTTAAAGATATTGGCAGCCGGCATTTTGGCCTTGGAGCGCAGCACAATTTGCGGATCCAGGTTGGAGTACTGACGTCCATTTAAGC 'Shiraia-like fungus JP93' CCCCCGTCTGCCCATGTTTATTGCGTACTACATGTTTCCTCGGCTGGTTCTCCAGCCGATAGGAT?CTCTTAAACTCATTGTAATTGCAATCAGCGTCTGAAAAAATCATAATATTTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTATGCTTGGTGTTGGGTGTTTGTCCTATCCATTGCGACTGGACTCGCCTTAAAGATATTGGCAGCCGGCATTTTGGCCTTGGAGCGCAGCACAATTCGCGAGTCCAAGCCGGAATACTGACGTCCAGATAAGC 'Shiraia-like fungus JP232' CCCCCGTCTGCCCATGTTTATTGCGTACTACATGTTTCCTCGGCTGGTTCTCCAGCCGATAGGAT?CTCTTAAACTCATTGTAATTGCAATCAGCGTCTGAAAAAATCATAATATTTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTATGCTTGGTGTTGGGTGTTTGTCCTATCCATTGCGACTGGACTCGCCTTAAAGATATTGGCAGCCGGCATTTTGGCCTTGGAGCGCAGCACAATTTGCGAGTCCAAGCCGGAATACTGACGTCCAGATAAGC Shiraia_sp._ML2004_AY425966 CCCCCGTCTGCCCATGTTTTTTGCGTACTACATGTTTCCTCGGCTGGTTCTCCAGCCGATAGGAT?CTCTTAAACTCATTGTAATTGCAATCAGCGTCTGAAAAAATTATAATATTTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTATGCTTGGTGTTGGGTGTTTGTCCTATCCATTGCGACTGGACTCGCCTTAAAGATATTGGCAGCCGGCATTTTGGCCTTGGAGCGCAGCACAATTTGCGAGTCCAAGCCGGAATACTGACGTCCAGATAAGC Neophaeosphaeria_barrii_AF466301 AA?TATTCTACCCATGTCTTTTGCGTACTATTTGTTTCCTTGGTGGGCTTGCCTGCCGATAGGACACTATAAACCCCTTTGTAATTGCAGTCAGCGTCAGAAAATAA??TAATAATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTCTGCTTGGTGTTGGGCGTTTGTCCCG??CTTTACGCGTGGACTCGCCTTAAAGTGATTGGCAGCCGGCATATTGGCTTTGGAGCGCAGCACATTTTGCGCTTCTTGCCCTGTATTCCAGCGTCCATTAAGCC Leptosphaeria_maculans_AJ550873 A????TTCTACCCATGTTTTTTGCGTACTATTTGTTTCCTTGGTGGGCTTGCCCACCAATTGGATCCCCCTAAAACCCTTGCAATTGCAGTCAGCGTCAGTAACAA?TGTAATAATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTCTGCTTGGTGTTGGGTGAATGTTCCA??CTTG??????GGACTCGCCTTGAAACAATTGGCAGCCGGCACATTGGCCT?GGAGCGCAGCAC?TTTTGCGCCTCTTGATGGTTGTT??GGCATCCATCAAGAC Ampelomyces_humuli_ITS_AF035779 ????????TACCCATGTCTTTTAAGTACCTT?CGTTTCCTCGGCGGGTTCGCCCGCCGATTGGACAAT?TT?AAACCATTTGCAGTTGAATCAGCGTCTGAAAAAACTT?AATAGTTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTACCTTCAAGCTCTGCTTGGTGTTGGGTGTTTGTCTCGCC?TCTGCGTGTAGACTCGCCTCAAAACAATTGGCAGCCGGCGTATTGATTTCGGAGCGCAGTACATCTCGCGCTTTGCACTCATAACGACGACGTCCAAAAGTAC Ampelomyces_quercinus_AF035778 ????????TACCCATGTCTTTTAAGTACCTTACGTTTCCTCGGCGGGTCCGCCCGCCGATTGGACAA??TTTAAACCAATTGCAGTTGAATCAGCGTCTGAAAAAACT?TAATAGTTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTACCTTCAAGCTCTGCTTGGTGTTGGGTGTTTGTCTCG?CCTCTGCGTGTAGACTCGCCTCAAAACAATTGGCAGCCGGCGTATTGATTTCGGAGCGCAGTACATCTCGCGCTTTGCACTCATAACGACGACGTCCAAAAGTAC Helminthosporium_solani_AF073912 GGGGTCGGAACCCTC??????TGTCTACCTGTTGTTTCCTCGGCAGGCTTGCCTGCCGCCAGGAATCCT?TAAACCCTTCTGAAGCAT?ATCAAAAC?TCTGATAAACTTAATTATCACAACTTTCAACAATGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGAAAAGTAGTGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTCGGTATTCCGTGGGGCATGCCTGTTCGAGCGTCATTTACACCCTCAAGCTCTGCTTGGTGTTGGGCGTCTGTCCCG?CTTCCCCGCGTGGACTCGCCCCAAAGTTATTGGCAGCGGTCGTGCCAGCTTCTCAGTGCAGCACATT??GCGCTTCTTGCCCTG?GTACCAGCGTCCAGCAAGCC Lophiostoma_arundinis_AF383952 AACACAATAACCCTTGTTTTTTGTGCACCCTTTGTTTCCTCGGCAGCTTTGCCTGCCAGCGAGGACC?CCAAAAACCTTTGCAATCTT????AGTATACAATCTGCAAACAAT?ATTAAAACTTTCAACAATGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGGACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCATTTACAA?ATCAAGCTCAGCTTGGTGATGGGTGTCTTCCCGCCT??TTGCGCGTGGACTCGCCTCAAATGCATTGGCAGCT?TGTTCCTCGGCTCTAAACGCAGCAG?CGTCGAGCGTCGGG?CGGACGGGCTC???TCCAGTAAGCA ; END; BEGIN CODONS; CODONPOSSET * CodonPositions = N: 1 - 421 ; CODESET * UNTITLED = Universal: all ; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; END;