#NEXUS [written Tue May 02 14:01:00 CEST 2017 by Mesquite version 3.03 (build 702) at Matthias-Lutzs-MacBook-Pro-2.local/10.16.201.58] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=13; TAXLABELS Microbotryum_silenesacaulis_JN223408 Microbotryum_silenesacaulis_JN223407 Microbotryum_silenesacaulis_JN223406 Microbotryum_silenesacaulis_DQ366850 Microbotryum_silenesacaulis_DQ366849 Microbotryum_silenesacaulis_DQ366846 Microbotryum_silenesacaulis_DQ366851 Microbotryum_silenesacaulis_DQ366855 Microbotryum_silenesacaulis_DQ366854 Microbotryum_silenesacaulis_GQ150515 Microbotryum_silenesacaulis_GQ150516 Microbotryum_silenesacaulis_GQ150524 Microbotryum_silenesacaulis_AY014226 ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=728; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Microbotryum_silenesacaulis_JN223408 ---------------------------------------TCCGTAGGTG-ACCTGCGGAAGGATCATTAGTGAATTTATAGCGCACCTGTTTAACCAGGGCGTGACCTCTCACTTTTTCAAACTCTGTGCACTTCTAATGGGGGGGCCAAGGAAAGGCGATTAGCTTCGCCTCGACTTTGTGCCCGCTCGTTTTATTAAACATTTAAAGTCAATGGTATGGGAAAAAGAAATGATAAATAACCAAAAAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATCTTGCGCTCGCTGGTATTCCGGCGAGCATGTCTGTTTGAGTGTCGTGAACTCTTCAA-CCCCCCCTTTTTCTTATGGAGATGGGGGCGTGGCTTGGTTTCTGAATGGTTGCTGGACTTGGTTTCCTTTTAAGGATTCTAAAGTCGAAGCTCGTTCGTAATGCATTCGCATCCTAACCTTCGAGATCAGATTGACTCGGCGTAATAGACTATTCGCTGAGGACATGGCATCCCTTTACCGGGGTGTAATGGCTGGCCTGGGAAAAGTGGAAGCTAATAAACCCCCGACTATTAGTCACATCAATTTAAGATTAGACCTCAGATCAGGCAGGATTACCCGCTGAACTTAAGCATATCAATA----------- Microbotryum_silenesacaulis_JN223407 ---------------------------------------TCCGTAGGTG-ACCTGCGGAAGGATCATTAGTGAATTTATAGCGCACCTGTTTAACCAGGGCGTGACCTCTCACTTTTTCAAACTCTGTGCACTTCTAATGGGGGGGCCAAGGAAAGGCGATTAGCTTCGCCTCGACTTTGTGCCCGCTCGTTTTATTAAACATTTAAAGTCAATGGTATGGGAAAAAGAAATGATAAATAACCAAAAAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATCTTGCGCTCGCTGGTATTCCGGCGAGCATGTCTGTTTGAGTGTCGTGAACTCTTCAA-CCCCCCCTTTTTCTTATGGAGATGGGGGCGTGGCTTGGTTTCTGAATGGTTGCTGGACTTGGTTTCCTTTTAAGGATTCTAAAGTCGAAGCTCGTTCGTAATGCATTCGCATCCTAACCTTCGAGATCAGATTGACTCGGCGTAATAGACTATTCGCTGAGGACATGGCATCCCTTTACCGGGGTGTAATGGCTGGCCTGGGAAAAGTGGAAGCTAATAAACCCCCGACTATTAGTCACATCAATTTAAGATTAGACCTCAGATCAGGCAGGATTACCCGCTGAACTTAAGCATATCAATA----------- Microbotryum_silenesacaulis_JN223406 ---------------------------------------TCCGTAGGTG-ACCTGCGGAAGGATCATTAGTGAATTTATAGCGCACCTGTTTAACCAGGGCGTGACCTCTCACTTTTTCAAACTCTGTGCACTTCTAATGGGGGGGCCAAGGAAAGGCGATTAGCTTCGCCTCGACTTTGTGCCCGCTCGTTTTATTAAACATTTAAAGTCAATGGTATGGGAAAAAGAAATGATAAATAACCAAAAAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATCTTGCGCTCGCTGGTATTCCGGCGAGCATGTCTGTTTGAGTGTCGTGAACTCTTCAA-CCCCCCCTTTTTCTTATGGAGATGGGGGCGTGGCTTGGTTTCTGAATGGTTGCTGGACTTGGTTTCCTTTTAAGGATTCTAAAGTCGAAGCTCGTTCGTAATGCATTCGCATCCTAACCTTCGAGATCAGATTGACTCGGCGTAATAGACTATTCGCTGAGGACATGGCATCCCTTTACCGGGGTGTAATGGCTGGCCTGGGAAAAGTGGAAGCTAATAAACCCCCGACTATTAGTCACATCAATTTAAGATTAGACCTCAGATCAGGCAGGATTACCCGCTGAACTTAAGCATATCAATA----------- Microbotryum_silenesacaulis_DQ366850 -----------------AAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAGTGAATTTATAGCGCACCTGTTTAACCAGGGCGTGACCTCTCACTTTTTCAAACTCTGTGCACTTCTAATGGGGGGGCCAAGGAAAGGCGATTAGCTTCGCCTCGACTTTGTGCCCGCTCGTTTTATTAAACATTTAAAGTCAATGGTATGGGAAAAAGAAATGATAAATAACCAAAAAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATCTTGCGCTCGCTGGTATTCCGGCGAGCATGTCTGTTTGAGTGTCGTGAACTCTTCAA-CCCCCCCTTTTTCTTATGGAGATGGGGGCGTGGCTTGGTTTCTGAATGGTTGCTGGACTTGGTTTCCTTTTAAGGATTCTAAAGTCGAAGCTCGTTCGTAATGCATTCGCATCCTAACCTTCGAGATCAGATTGACTCGGCGTAATAGACTATTCGCTGAGGACATGGCATCCCTTTACCGGGGTGTAATGGCTGGCCTGGGAAAAGTGGAAGCTAATAAACCCCCGACTATTAGTCACATCAATTTAAGATTAGACCTCAGATCAGGCAGGATTACCCGCTGAACTTAAGCATAT---------------- Microbotryum_silenesacaulis_DQ366849 TCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAGTGAATTTATAGCGCACCTGTTTAACCAGGGCGTGACCTCTCACTTTTTCAAACTCTGTGCACTTCTAATGGGGGGGCCAAGGAAAGGCGATTAGCTTCGCCTCGACTTTGTGCCCGCTCGTTTTATTAAACATTTAAAGTCAATGGTATGGGAAAAAGAAATGATAAATAACCAAAAAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATCTTGCGCTCGCTGGTATTCCGGCGAGCATGTCTGTTTGAGTGTCGTGAACTCTTCAA-CCCCCCCTTTTTCTTATGGAGATGGGGGCGTGGCTTGGTTTCTGAATGGTTGCTGGACTTGGTTTCCTTTTAAGGATTCTAAAGTCGAAGCTCGTTCGTAATGCATTCGCATCCTAACCTTCGAGATCAGATTGACTCGGCGTAATAGACTATTCGCTGAGGACATGGCATCCCTTTACCGGGGTGTAATGGCTGGCCTGGGAAAAGTGGAAGCTAATAAACCCCCGACTATTAGTCACATCAATTTAAGATTAGACCTCAGATCAGGCAGGATTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA-- Microbotryum_silenesacaulis_DQ366846 --------------------------------------TTCCGTAGGTGAACCTGCGGAAGGATCATTAGTGAATTTATAGCGTACCTGTTTAACCAGGGCGTGACCTCTCACTTTTTCAAACTCTGTGCACTTCTAATGGGGGGGCCAAGGAAAGGCGATTAGCTTCGCCTCGACTTTGTGCCCGCTCGTTTTATTAAACATTTAAAGTCAATGGTATGGGAAAAAGAAATGATAAATAACCAAAAAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATCTTGCGCTCGCTGGTATTCCGGCGAGCATGTCTGTTTGAGTGTCGTGAACTCTTCAA-CCCCCCCTTTTTCTTATGGAGATGGGGGCGTGGCTTGGTTTCTGAATGGTTGCTGGACTTGGTTTCCTTTTAAGGATTCTAAAGTCGAAGCTCGTTCGTAATGCATTCGCATCCTAACCTTCGAGATCAGATTGACTCGGCGTAATAGACTATTCGCTGAGGACATGGCATCCCTTTACCGGGGTGTAATGGCTGGCCTGGGAAAAGTGGAAGCTAATAAACCCCCGACTATTAGTCACATCAATTTAAGATTAGACCTCAGATCAGGCAGGATTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA-- Microbotryum_silenesacaulis_DQ366851 -------------------------------------TTTCCGTAGGTGAACCTGCGGAAGGATCATTAGTGAATTTATAGCGTACCTGTTTAACCAGGGCGTGACCTCTCACTTTTTCAAACTCTGTGCACTTCTAATGGGGGGGCCAAGGAAAGGCGATTAGCTTCGCCTCGACTTTGTGCCCGCTCGTTTTATTAAACATTTAAAGTCAATGGTATGGGAAAAAGAAATGATAAATAACCAAAAAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATCTTGCGCTCGCTGGTATTCCGGCGAGCATGTCTGTTTGAGTGTCGTGAACTCTTCAA-CCCCCCCTTTTTCTTATGGAGATGGGGGCGTGGCTTGGTTTCTGAATGGTTGCTGGACTTGGTTTCCTTTTAAGGATTCTAAAGTCGAAGCTCGTTCGTAATGCATTCGCATCCTAACCTTCGAGATCAGATTGACTCGGCGTAATAGACTATTCGCTGAGGACATGGCATCCCTTTACCGGGGTGTAATGGCTGGCCTGGGAAAAGTGGAAGCTAATAAACCCCCGACTATTAGTCACATCAATTTAAGATTAGACCTCAGATCAGGCAGGATTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA-- Microbotryum_silenesacaulis_DQ366855 --------------------------------------TTCCGTAGGTGAACCTGCGGAAGGATCATTAGTGAATTTATAGCGTACCTGTTTAACCAGGGCGTGACCTCTCACTTTTTCAAACTCTGTGCACTTCTAATGGGGGGGCCAAGGAAAGGCGATTAGCTTCGCCTCGACTTTGTGCCCGCTCGTTTTATTAAACATTTAAAGTCAATGGTATGGGAAAAAGAAATGATAAATAACCAAAAAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATCTTGCGCTCGCTGGTATTCCGGCGAGCATGTCTGTTTGAGTGTCGTGAACTCTTCAA-CCCCCCCTTTTTCTTATGGAGATGGGGGCGTGGCTTGGTTTCTGAATGGTTGCTGGACTTGGTTTCCTTTTAAGGATTCTAAAGTCGAAGCTCGTTCGTAATGCATTCGCATCCTAACCTTCGAGATCAGATTGACTCGGCGTAATAGACTATTCGCTGAGGACATGGCATCCCTTTACCGGGGTGTAATGGCTGGCCTGGGAAAAGTGGAAGCTAATAAACCCCCGACTATTAGTCACATCAATTTAAGATTAGACCTCAGATCAGGCAGGATTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA-- Microbotryum_silenesacaulis_DQ366854 ---TGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAGTGAATTTATAGCGTACCTGTTTAACCAGGGCGTGACCTCTCACTTTTTCAAACTCTGTGCACTTCTAATGGGGGGGCCAAGGAAAGGCGATTAGCTTCGCCTCGACTTTGTGCCCGCTCGTTTTATTAAACATTTAAAGTCAATGGTATGGGAAAAAGAAATGATAAATAACCAAAAAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATCTTGCGCTCGCTGGTATTCCGGCGAGCATGTCTGTTTGAGTGTCGTGAACTCTTCAA-CCCCCCCTTTTTCTTATGGAGATGGGGGCGTGGCTTGGTTTCTGAATGGTTGCTGGACTTGGTTTCCTTTTAAGGATTCTAAAGTCGAAGCTCGTTCGTAATGCATTAGCATCCTAACCTTCGAGATCAGATTGACTCGGCGTAATAGACTATTCGCTGAGGACATGGCATCCCTTTACCGGGGTGTAATGGCTGGCCTGGGAAAAGTGGAAGCTAATAAACCCCCGACTATTAGTCACATCAATTTAAGATTAGACCTCAGATCAGGCAGGATTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA-- Microbotryum_silenesacaulis_GQ150515 --------------------------------------------------------------------------------GCGTACCTGTTTAACCAGGGCGTGACCTCTCACTTTTTCAAACTCTGTGCACTTCTAATGGGGGGGCCAAGGAAAGGCGATTAGCTTCGCCTCGACTTTGTGCCCGCTCGTTTTATTAAACATTTAAAGTCAATGGTATGGGAAAAAGAAATGATAAATAACCAAAAAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATCTTGCGCTCGCTGGTATTCCGGCGAGCATGTCTGTTTGAGTGTCGTGAACTCTTCAA-CCCCCCCTTTTTCTTATGGAGATGGGGGCGTGGCTTGGTTTCTGAATGGTTGCTGGACTTGGTTTCCTTTTAAGGATTCTAAAGTCGAAGCTCGTTCGTAATGCATTAGCATCCTAACCTTCGAGATCAGATTGAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Microbotryum_silenesacaulis_GQ150516 --------------------------------------------------------------------------------GCGTACCTGTTTAACCAGGGCGTGACCTCTCACTTTTTCAAACTCTGTGCACTTCTAATGGGGGGGCCAAGGAAAGGCGATTAGCTTCGCCTCGAATTCGTGCCCGCTCGTTTTATTAAACATTTAAAGTCAATGGTATGGGAAAAAGAAATGATAAATAACCAAAAAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATCTTGCGCTCGCTGGTATTCCGGCGAGCATGTCTGTTTGAGTGTCGTGAACTCTTCAA-CCCCCCCTTTTTCTTATGGAGATGGGGGCGTGGCTTGGTTTCTGAATGGTTGCTGGACTTGGTTTCCTTTTGGGGATTCTAAAGTCGAAGCTCGTTCGTAATGCATTAGCATCCTAACCTTCGAGATCAGATTGAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Microbotryum_silenesacaulis_GQ150524 -------------------------------------------------------------------------------------TCTGTTTAACCAGGGCGTGACCTCTCACTTTTTCAAACTCTGTGCACTTCTAATGGGGGGGCCAAGGAAAGGCGATTAGCTTCGCCTCGAATTCGTGCCCGCTCGTTTTATTAAACATTTAAAGTCAATGGTATGGGAAAAAGAAATGATAAATAACCAAAAAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATCTTGCGCTCGCTGGTATTCCGGCGAGCATGTCTGTTTGAGTGTCGTGAACTCTTCAACCCCCCCCTTTTTCTTATGGAGATGGGGGCGTGGCTTGGTTTCTGAATGGTTGCTGGACTTGGTTTCCTTTTGGGGATTCTAAAGTCGAAGCTCGTTCGTAATGCATTAGCATCCTAACCTTCGAGATCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Microbotryum_silenesacaulis_AY014226 -------------------------------------------------------------------------------------------------------------TCA-TTTTTCAAACTCTGTGCACTTCTAATGGGGGGGCCAAGGAAAGGCGATTAGCTTCGCCTCGAATTCGTGCCCGCTCGTTTTATTAAACATTTAAAGTCAATGGTATGGGAAAAAGAAATGATAAATAACCAAAAAAAACTTTCAACAACGG-TCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATCTTGCGCTCGCTGGTATTCCGGCGAGCATGTCTGTTTGAGTGTCGTGAACTCTTCAA-CCCCCCCTTTTTCTTATGGAGATGGGGGCGT-GCTTGGTTTCTGAATGGTTGCTGGACTTGGTTTCCTTTTGGGGATTCTAAAGTCGAAGCTCGTTCGTAATGCATTAGCATCCTAACCTTCGA-ATCAGATTGACTCGGCGTAATAGACTATTCGCTGAGGACATGGCATCCCTTTACCGGGGTGTAATGGCTGGCCTGGGAAAAGTGGAAGCTAAT-AACCCCCGACTATTAGTCACATCAATTTAAGATTAGAC------------------------------------------------------- ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 728; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 728; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 728; END; BEGIN TREES; Title 'Trees from "sghds"'; LINK Taxa = Taxa; TRANSLATE [0] n0 Microbotryum_silenesacaulis_JN223408, [1] n1 Microbotryum_silenesacaulis_JN223407, [2] n2 Microbotryum_silenesacaulis_JN223406, [3] n3 Microbotryum_silenesacaulis_DQ366850, [4] n4 Microbotryum_silenesacaulis_DQ366849, [5] n5 Microbotryum_silenesacaulis_DQ366846, [6] n6 Microbotryum_silenesacaulis_DQ366851, [7] n7 Microbotryum_silenesacaulis_DQ366855, [8] n8 Microbotryum_silenesacaulis_DQ366854, [9] n9 Microbotryum_silenesacaulis_GQ150515, [10] n10 Microbotryum_silenesacaulis_GQ150516, [11] n11 Microbotryum_silenesacaulis_GQ150524, [12] n12 Microbotryum_silenesacaulis_AY014226; TREE tree_1 = (n0:0.00000146313912983501,(n2:0.00000146313912983501,(n3:0.00000146313912983501,(((n8:0.00000146313912983501,((n10:0.00000146313912983501,(n12:0.00000146313912983501,n11:0.004374292674075064):0.00000146313912983501):0.006797554228281795,n9:0.00000146313912983501):0.00000146313912983501):0.0013874089645716208,(n6:0.00000146313912983501,(n5:0.00000146313912983501,n7:0.00000146313912983501):0.00000146313912983501):0.00000146313912983501):0.001386551824971564,n4:0.00000146313912983501):0.00000146313912983501):0.00000146313912983501):0.00000146313912983501,n1:0.00000146313912983501); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1493726460396; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 2769552703601818809; tell It; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 5305709979168725530; mqVersion 303; checksumv 0 3 3202260191 null getNumChars 728 numChars 728 getNumTaxa 13 numTaxa 13 short true bits 15 states 15 sumSquaresStatesOnly 190151.0 sumSquares 190151.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 464; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #2769552703601818809 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 1221.1493726443336.169734044134284884; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 392; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #5305709979168725530 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 392; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;