#NEXUS [written Mon Apr 24 10:04:01 CEST 2017 by Mesquite version 3.2 (build 801) at HG17209/172.30.18.79] BEGIN TAXA; TITLE 19b; DIMENSIONS NTAX=21; TAXLABELS Homonota_andicola_LJAMMCNP_12490 Homonota_andicola_LJAMMCNP_12495 Homonota_borellii_LJAMMCNP_12116 Homonota_borellii_LJAMMCNP_12125 Homonota_darwinii_LJAMMCNP_11432 Homonota_darwinii_LJAMMCNP_9266 Homonota_spa_LJAMMCNP_10577 Homonota_spa_LJAMMCNP_5047 Homonota_rupicola_RUPI_1 Homonota_rupicola_RUPI_2 Homonota_spb_MNHNP_11406 Homonota_spb_MNHNP_11409 Homonota_taragui_LJAMMCNP_14419 Homonota_taragui_LJAMMCNP_14420 Homonota_uruguayensis_UFRGS_1568 Homonota_uruguayensis_UFRGS_2579 Homonota_underwoodi_LJAMMCNP_10923 Homonota_underwoodi_LJAMMCNP_10931 Homonota_whitii_LJAMMCNP_12111 Homonota_williamsii_LJAMMCNP_4467 Homonota_williamsii_LJAMMCNP_6517 ; END; BEGIN CHARACTERS; TITLE 19b_Matrix; DIMENSIONS NCHAR=642; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Homonota_andicola_LJAMMCNP_12490 TAAGAAAAGAGAAGGCAATTCATTTCTGTTTTATCATGTTTTTATGTTGCCTTTCCTCTAAGGATTGATAAATGACACTCTAGACTCTATT----TATTTATTTA---------AAAAAACAAACAAACATGTCT-GCTGTGCTTTACAGCCA-TAAGACTCTGAGTTGTACCTGAGCAGCTTTTCTTAGAGGAAAAAACCTATTAATCTATTTGCTAAATCCTCAGTTTACAGTCTGGAACACAGACTGTCATCAAATAAATATGCCAAATTGTTTTGTTTTTAAGCATTACCTTCTGATAACTGTTTCATTTTCCATTTCTGCTTTTTCTTGTTCTTGTAAGAGAAAAGAAATGGTTTCCAAATTCCCTCTTCTTGAAGATCATGCTGGATTATAACTTTGACACACCTTCTTTAGAAAAGTCAATTATTAATCTTTAGTATCTGCTTCCTAGGAGGACATTTGTTCAAGCTGAGTCTTTCCTTGTACTAAAAGAGTATGAGGGAAAGCTAAGTGGATTCCCCAAAGAGGACTCTGTTAATAACCAGCTGTCCAGCAGGACCCATCTTAACAAAGGTCTAAGAACTGGACTAAATGTATTGGGGGGCTACCTGTCAAAGTCACGGGACTCAGGAATCTGA Homonota_andicola_LJAMMCNP_12495 TAAGAAAAGAGAAGGCAATTCATTTCTGTTTTATCATGTTTTTATGTTGCCTTTCCTCTAAGGATTGATAAATGACACTCTATACTCTATT----TATTTATTTA---------AAAAAACAAACAAACATGTCT-GCTGTGCTTTACAGCCA-TAAGACTCTGAGTTGTACCTGAGCAGCTTTTCTTAGAGGAAAAAACCTATTAATCTATTTGCTAAATCCTCAGTTTACAGTCTGGAACACAGACTGTCATCAAATAAATATGCCAAATTGTTTTGTTTTTAAGCATTACCTTCTGATAACTGTTTCATTTTCCATTTCTGCTTTTTCTTGTTCTTGTAAGAGAAAAGAAATGGTTTCCAAATTCCCTCTTCTTGAAGATCATGCTGGATTATAACTTTGACACACCTTCTTTAGAAAAGTCAATTATTAATCTTTAGTATCTGCTTCCTAGGAGGACATTTGTTCAAGCTGAGTCTTTCCTTGTACTAAAAGAGTATGAGGGAAAGCTAAGTGGATTCCCCAAAGAGGACTCTGTTAATAACCAGCTGTCCAGCAGGACCCATCTTAACAAAGGTCTAAGAACTGGACTAAATGTATTGGGGGGCTACCTGTCAAAGTCACGGGACTCAGGAATCTGA Homonota_borellii_LJAMMCNP_12116 ?????????????????????????????????????GTTTTTATGTTGCCTTTCCTCTAAGGATGGATAAATGACACTCTAGACTCTATTAATTTATTTATTTATTT-T---AAAAAAACAAACAAACATGTCT-GCTGTGCTTTACAGCCAATA-GACTCTGAGTTGTACCTGAGCAGCTTTTCTTAGAGGAAACAACCTATTAATCTATTTGCTAAATCCTCAATTTACAGTCTGGAACACAGACTGTCATCAAATAAATATGCCAAATTGTTT-GTTTTTAAGCATTACCTTCTGATAACTGTTTCATTTTCCATTTCTGCTTTTTCTTGTTCTTGTAAGAGAAAAGAAATGGTTTCCAAATTCCCTCTTCTTGAAGATCATGCTGGATTATAACTTTGACACACTTTCGTTAGAAAAGTCAATTATTAATCTTTAGTATCTGCTTCCTAGGAGGACATTTGTTCAAGCTGAGTCTTTCCT-GTACTAAAAGAGTACGAGGAAAAGCTAAGTGGATTCCCCAAAGAGGACTCTGTTAATAACCAGCTGTCCAGGAGGACCCATCTTAACAAAGGTCTGAGAACTGGACTAAATGTATTGGGGGGCTACCTGTCAAAGTCACGGGACTCAGGAATCTGA Homonota_borellii_LJAMMCNP_12125 TAAGAAAAGAGAAGGCAATTCATTTCTGTTTTATCATGTTTTTATGTTGCCTTTCCTCTAAGGATGGATAAATGACACTCTAGACTCTATTAATTTATTTATTTATTT-TT---AAAAAACAAACAAACATGTCT-GCTGTGCTTTACAGCCAATA-GACTCTGAGTTGTACCTGAGCAGCTTTTCTTAGAGGAAACAACCTATTAATCTATTTGCTAAATCCTCAATTTACAGTCTGGAACACAGACTGTCATCAAATAAATATGCCAAATTGTTT-GTTTTTAAGCATTACCTTCTGATAACTGTTTCATTTTCCATTTCTGCTTTTTCTTGTTCTTGTAAGAGAAAAGAAATGGTTTCCAAATTCCCTCTTCTTGAAGATCATGCTGGATTATAACTTTGACACACTTTCGTTAGAAAAGTCAATTATTAATCTTTAGTATCTGCTTCCTAGGAGGACATTTGTTCAAGCTGAGTCTTTCCT-GTACTAAAAGAGTACGAGGAAAAGCTAAGTGGATTCCCCAAAGAGGACTCTGTTAATAACCAGCTGTCCAGGAGGACCCATCTTAACAAAGGTCTGAGAACTGGACTAAATGTATTGGGGGGCTACCTGTCAAAGTCACGGGACTCAGGAATCTGA Homonota_darwinii_LJAMMCNP_11432 ?????????????????????????????????????????????GTTGCCTTTCCTCTAAGGATGGATAAATGACACTCTAGACTCTATT----TATTTATTTTTTTT-----AAAAAACAATCAAACATGTCT-GCTGTGCTTTACAGCCA-TAAGACTCTGAGTTGTACCTGAGCAGCTTTTCTTAGAGGAAACAACCTATTAATCTATTTGCTAAATCCTCAGTTTACAGTCTGGAACACAGATTGTCATCAAATAAATATGCCAAATTGTTTTGTTTTTAAGCATTACCTTCTGATAACTGTTTCATTTTCCATTTCTGCTTTTTCTTGTTCTTGTAAGAGAAAAGAAATGGTTTCCAAATTCCCTCTTCTTGAAGATCATGCTGGATTATAACTTTGACACACTTTCTTTAGAAAAGTCAATTATTAATCTTTAGTATCTGCTTCCTAGGAGGACATTTGTTCAAGCTGAGTCTTTCCT-GTACTAAAAGAGTATGAGGGAAAGCTAAGTGGATTCCCCAAAGAGGACGCTGTTAATAACCAGCTGTCCAGCAGGACCCATCTTAACAAAGGTCTAAGAACTGGACTAAATTTATTGGGGGGCTACCTGTCAAAGTCACGGGACTCAGGAATCTGA Homonota_darwinii_LJAMMCNP_9266 TAAGAAAAGAGAAGGCAATTCATTTCTGTTTTATCATGTTTTTATGTTGCCTTTCCTCTAAGGATGGATAAATGACACTCTAGACTCTATT----TATTTATTTTTTTT-----AAAAAACAATCAAACATGTCT-GCTGTGCTTTACAGCCA-TAAGACTCTGAGTTGTACCTGAGCAGCTTTTCTTAGAGGAAACAACCTATTAATCTATTTGCTAAATCCTCAGTTTACAGTCTGGAACACAGATTGTCATCAAATAAATATGCCAAATTGTTTTGTTTTTAAGCATTACCTTCTGATAACTGTTTCATTTTCCATTTCTGCTTTTTCTTGTTCTTGTAAGAGAAAAGAAATGGTTTCCAAATTCCCTCTTCTTGAAGATCATGCTGGATTATAACTTTGACACACTTTCTTTAGAAAAGTCAATTATTAATCTTTAGTATCTGCTTCCTAGGAGGACATTTGTTCAAGCTGAGTCTTTCCT-GTACTAAAAGAGTATGAGGGAAAGCTAAGTGGATTCCCCAAAGAGGACGCTGTTAATAACCAGCTGTCCAGCAGGACCCATCTTAACAAAGGTCTAAGAACTGGACTAAATTTATTGGGGGGCTACCTGTCAAAGTCACGGGACTCAGGAATCTGA Homonota_spa_LJAMMCNP_10577 ?????????????????????????????????????GTTTTTATGTTGCCTTTCCTCTAAGGATGGATAAATGACACTCTAGACTCTATTTATTTATTTATTTATTTATTT-AAAAAAACAAAGAAACATGTCT-GATGTTCTTTACAGCCAA---GACTCTGAGTTGTACCTGAGCAGCTTTTCTTAGAGGAAACAACCTATTAATCTATTTGCTAAATCCTCAATTTACAATGTGGAACACACATTGTCATCAAATAAAAATGCCAAATTGTTTTGTTTTTAAGCATTACCTTCTGATAACTGTTTCATTTTCCATTTCTGCTTTTTCTTGTTCTTGCAAGAGAAAAGAAATGGTTTCCAAATTCCCTCTTCTTGAAGATCATGCTGGATTATAACTTTGACACACTTTCTTTAGAAAAGTCAATTATTAATCTTTAGTATCTGCTTCCTAGGAGGACACTTGTTCAAGCTGAGTCTTTCCT-GTACTAAAAGAGTACAAGGAAAAGCTAAGTGGATTCCCCAAAGAGGACTCTGTTAATAACCAGCTGTCCAGCAGGACCCATCTTAACAAAGGTCTAAGAACTGGAGTAAATGTATTGGGGGGCTACCTGTCAAGGTCACGGGACTCAGGAATCTGA Homonota_spa_LJAMMCNP_5047 TAAGAAAAGAGAAGGCAATTCATTTCTGTTTTATCATGTTTTTATGTTGCCTTTCCTCTAAGGATGGATAAATGACACTCTAGACTCTATT----TATTTATTTATTTATTT-AAAAAAACAAAGAAACATGTCT-GATGTKCTTTACAGCCAA---GACTCTGAGTTGTACCTGAGCAGCTTTTCTTAGAGGAAACAACCTATTAATCTATTTGCTAAATCCTCAATTTACAATGTGGAACACACATTGTCATCAAATAAAAATGCCAAATTGTTTTGTTTTTAAGCATTACCTTCTGATAACTGTTTCATTTTCCATTTCTGCTTTTTCTTGTTCTTGCAAGAGAAAAGAAATGGTTTCCAAATTCCCTCTTCTTGAAGATCATGCTGGATTATAACTTTGACACACTTTCTTTAGAAAAGTCAATTATTAATCTTTAGTATCTGCTTCCTAGGAGGACACTTGTTCAAGCTGAGTCTTTCCT-GTACTAAAAGAGTACAAGGAAAAGCTAAGTGGATTCCCCAAAGAGGACTCTGTTAATAACCAGCTGTCCAGCAGGACCCATCTTAACAAAGGTCTAAGAACTGGAGTAAATGTATTGGGGGGCTACCTGTCAAGGTCACGGGACTCAGGAATCTGA Homonota_rupicola_RUPI_1 TAAGAAAAGAGAAGGCAATTCATTTCTGTTTTATCATGTTTTTATGTTGCCTTTCCTCTAAGGATGGATAAATGACACTCTAGACTCTATT----TATTTATTTGTTTATTT--AAAAAACAAACAAACATGTCTTGCTGTGCTTTACAGCCAATA-GACTCTGAGTTGTACCTGAGCAGCTTTTCTTAGAGGAAACAACCTATTAATCTATTTGCTAAATCCTCAATTTACAGTCTGGAACACAGACTGTCATCAAATAAATATGCCAAATTGTTT-GTTTTTAAGCATTACCTTCTGATAACTGTTTCATTTTCCATTTCTGCTTTTTCTTGTTCTTGTAAGAGAAAAGAAATGGTTTCCAAATTCCCTCTTCTTGAAGATCATGCTGGATTATAACTTTGACACACTTTCGTTAGAAAAGTCAATTATTAATCTTTAGTATCTGCTTCCTAGGAGGACATTTGTTCAAGCTGAGTCTTTCCT-GTACTAAAAGAGTACGAGGAAAAGCTAAGTGGATTCCCCAAAGAGGACTCTGCTAATAACCAGCTGTCCAGGAGGACCCATCTTAACAAAGGTCTAAGAACTGGACTAAATGTATTGGGGGGCTACCTGTCAAAGTCACGGGACTCAGGAATCTGA Homonota_rupicola_RUPI_2 TAAGAAAAGAGAAGGCAATTCATTTCTGTTTTATCATGTTTTTATGTTGCCTTTCCTCTAAGGATGGATAAATGACACTCTAGACTCTATT----TATTTATTTGTTTATTT--AAAAAACAAACAAACATGTCTTGCTGTGCTTTACAGCCAATA-GACTCTGAGTTGTACCTGAGCAGCTTTTCTTAGAGGAAACAACCTATTAATCTATTTGCTAAATCCTCAATTTACAGTCTGGAACACAGACTGTCATCAAATAAATATGCCAAATTGTTT-GTTTTTAAGCATTACCTTCTGATAACTGTTTCATTTTCCATTTCTGCTTTTTCTTGTTCTTGTAAGAGAAAAGAAATGGTTTCCAAATTCCCTCTTCTTGAAGATCATGCTGGATTATAACTTTGACACACTTTCGTTAGAAAAGTCAATTATTAATCTTTAGTATCTGCTTCCTAGGAGGACATTTGTTCAAGCTGAGTCTTTCCT-GTACTAAAAGAGTACGAGGAAAAGCTAAGTGGATTCCCCAAAGAGGACTCTGCTAATAACCAGCTGTCCAGGAGGACCCATCTTAACAAAGGTCTAAGAACTGGACTAAATGTATTGGGGGGCTACCTGTCAAAGTCACGGGACTCAGGAATCTGA Homonota_spb_MNHNP_11406 TAAGAAAAGAGAAGGCAATTCATTTCTGTTTTATCATGTTTTTATGTTGCCTTTCCTCTAAGGATGGATAAATGACACTCTAGACTCTATT----TATTTATTTA---------AAAAAACAAAGAAACATGTCT-GATGTGCTTTACAGCCAA---GACTCTGAGTTGTACCTGAGCAGCTTTTCTTAGAGGAAACAACCTATTAATCTATTTGCTAAATCCTCAATTTACAATGTGGAACACACATTGTCATCAAATAAAAATGCCAAATTGTTTTGTTTTTAAGCATTACCTTCTGATAACTGTTTCATTTTCCATTTCTGCTTTTTCTTGTTCTTGCAAGAGAAAAGAAATGGTTTCCAAATTCCCTCTTCTTGAAGATCATGCTGGATTATAACTTTGACACACTTTCTTTAGAAAAGTCAATTATTAATCTTTAGTATCTGCTTCCTAGGAGGACACTTGTTCAAGCTGAGTCTTTCCT-GTACTAAAAGAGTACGAGGAAAAGCTAAGTGGATTCCCCAAAGAGGACTCTGTTAATAACCAGCTGTCCAGCAGGACCCATCTTAACAAAGGTCTAAGAACTGGAGTAAATGTATTGGGGGGCTACCTGTCAAGATCACGGGACTCAGGAATCTGA Homonota_spb_MNHNP_11409 TAAGAAAAGAGAAGGCAATTCATTTCTGTTTTATCATGTTTTTATGTTGCCTTTCCTCTAAGGATGGATAAATGACACTCTAGACTCTATT----TATTTATTTA---------AAAAAACAAAGAAACATGTCT-GATGTGCTTTACAGCCAA---GACTCTGAGTTGTACCTGAGCAGCTTTTCTTAGAGGAAACAACCTATTAATCTATTTGCTAAATCCTCAATTTACAATGTGGAACACACATTGTCATCAAATAAAAATGCCAAATTGTTTTGTTTTTAAGCATTACCTTCTGATAACTGTTTCATTTTCCATTTCTGCTTTTTCTTGTTCTTGCAAGAGAAAAGAAATGGTTTCCAAATTCCCTCTTCTTGAAGATCATGCTGGATTATAACTTTGACACACTTTCTTTAGAAAAGTCAATTATTAATCTTTAGTATCTGCTTCCTAGGAGGACACTTGTTCAAGCTGAGTCTTTCCT-GTACTAAAAGAGTACGAGGAAAAGCTAAGTGGATTCCCCAAAGAGGACTCTGTTAATAACCAGCTGTCCAGCAGGACCCATCTTAACAAAGGTCTAAGAACTGGAGTAAATGTATTGGGGGGCTACCTGTCAAGATCACGGGACTCAGGAATCTGA Homonota_taragui_LJAMMCNP_14419 TAAGAAAAGAGAAGGCAATTCATTTCTGTTTTATCATGTTTTTATGTTGCCTTTCCTCTAAGGATGGATAAATGACACTCTAGACTCTATTAATTTATTTATTTATTT---TAAAAAAAACAAACAAACATGTCT-GCTGTGCTTTACAGCCAATA-GACTCTGAGTTGTACCTGATCAGCTTTTCTTAGAGGAAACAACCTATTAATCTATTTGCTAAATCCTCAATTTACAGTCTGGAACACAGACTGTCATCAAATAAATATGCCAAATTGTTT-GTTTTTAAGCATTACCTTCTGATAACTGTTTCATTTTCCATTTCTGCTTTTTCTTGTTCTTGTAAGAGAAAAGAAATGGTTTCCAAATTCCCTCTTCTTGAAGATCATGCTGGATTATAACTTTGACACACTTTCGTTAGAAAAGTCAATTATTAATCTTTAGTATCTGCTTCCTAGGAGGACATTTGTTCAAGCTGAGTCTTTCCT-GTACTAAAAGAGTACGAGGAAAAGCTAAGTGGATTCCCCAAAGAGGACTCTGTTAATAACCAGCTGTCCAGGAGGACCCATCTTAACAAAGGTCTAAGAACTGGACTAAATGTATTGGGGGGCTACCTGTCAAAGTCACGGGACTCAGGAATCTGA Homonota_taragui_LJAMMCNP_14420 TAAGAAAAGAGAAGGCAATTCATTTCTGTTTTATCATGTTTTTATGTTGCCTTTCCTCTAAGGATGGATAAATGACACTCTAGACTCTATTAATTTATTTATTTATTT---TAAAAAAAACAAACAAACATGTCT-GCTGTGCTTTACAGCCAATA-GACTCTGAGTTGTACCTGATCAGCTTTTCTTAGAGGAAACAACCTATTAATCTATTTGCTAAATCCTCAATTTACAGTCTGGAACACAGACTGTCATCAAATAAATATGCCAAATTGTTT-GTTTTTAAGCATTACCTTCTGATAACTGTTTCATTTTCCATTTCTGCTTTTTCTTGTTCTTGTAAGAGAAAAGAAATGGTTTCCAAATTCCCTCTTCTTGAAGATCATGCTGGATTATAACTTTGACACACTTTCGTTAGAAAAGTCAATTATTAATCTTTAGTATCTGCTTCCTAGGAGGACATTTGTTCAAGCTGAGTCTTTCCT-GTACTAAAAGAGTACGAGGAAAAGCTAAGTGGATTCCCCAAAGAGGACTCTGTTAATAACCAGCTGTCCAGGAGGACCCATCTTAACAAAGGTCTAAGAACTGGACTAAATGTATTGGGGGGCTACCTGTCAAAGTCACGGGACTCAGGAATCTGA Homonota_uruguayensis_UFRGS_1568 ?????????????????????????????????????GTTTTTATGTTGCCTTTCCTCTAAGGATGGATAAATGACACTCTAGACTCTATT----TATTTATTTATTTATTTATTTAAAAAAAACAAACATGTCT-GCTGTGCTTTACAGCCAATA-GACTCTGAGTTGTACCTGAGCAGCTTTTCTTAGAGGAACCAACCTATTAATCTATTTGCTAAATCCTCAATTTACAGTCTGGAACACAGACTGTCATCAAATAAATATGCCAAATTGTTT-GTTTTTAAGCATTACCTTCTGATAACTGTTTCATTTTCCATTTCTGCTTTTTCTTGTTCTTGTAAGAGAAAAGAAATGGTTTCCAAATTCCCTCTTCTTGAAGATCATACTGGATTATAACTTTGACACA-TTTCCTTAGAAAAGTCAATTATTAATCTTTAGTATCTGCTTCCTAGGAGGACATTTGTTCAAGCTGAGTCTTTCCT-GTACTAAAGGAGTACGAGGAAAAGCTAAGTGGATTCCCCAAAGAGGACTCTGTTAATAACCAGCTGTCCAGGAGGACCCATCTTAACATAGGTCTAAGAACTGGACTAAATGTATTGGGGGG?????????????????????????????????? Homonota_uruguayensis_UFRGS_2579 ??????????????????????????????????????TTTTTATGTTGCCTTTCCTCTAAGGATGGATAAATGACACTCTAGACTCTATT----TATTTATTTATTTATTTTAAAAAAACAAACMAACATGTCT-GCTGTGCTTTACAGCCAATA-GACTCTGAGTTGTACCTGAGCAGCTTTTCTTAGAGGAAACAACCTATTAATCTATTTGCTAAATCCTCAATTTACAGTCTGGAACACAGACTGTCATCAAATAAATATGCCAAATTGTTT-GTTTTTAAGCATTACCTTCTGATAACTGTTTCATTTTCCATTTCTGCTTTTTCTTGTTCTTGTAAGAGAAAAGAAATGGTTTCCAAATTCCCTCTTCTTGAAGATCATACTGGATTATAACTTTGACACA-TTTCCTTAGAAAAGTCAATTATTAATCTTTAGTATCTGCTTCCTAGGAGGACATTTGTTCAAGCTGAGTCTTTCCT-GTACTAAAGGAGTACGAGGAAAAGCTAAGTGGATTCCCCAAAGAGGACTCTGTTAATAACCAGCTGTCCAGGAGGACCCATCTTAACATAGGTCTAAGAACTGGACTAAATGTATTGGGGG??????????????????????????????????? Homonota_underwoodi_LJAMMCNP_10923 TAAGAAAAGAGAAGGCAATTCATTTCTGTTTTATCATGTTTTTATGTTGCCTTTCCTCTAAGGATGGATAAATGACACTCTMGACTCTATT----TATTTATTTA---------AAAAAACAAAGAAACATGTCT-GATGTGCTTTACAGCCAA---GACTCTGAGTTGTACCTGAGCAACTTTTCTTAGAGGAAACAACCTATTAATCTATTTGCTAAATCCTCAATTTACAGTCTGGAACACACATTGTCATCAAATAAAAATGCCAAATTGTTTTGTTTTTAAGCATTACCTTCTGATAACTGTTTCATTTTCCATTTCTGCTTTTTCTTGTTCTTGTAAGAGAAAAGAAATGGTTTCCAAATTCCCTCTTCTTGAAGATCATGCTGGATTATAACTTTGACACACTTTCTTTAGAAAAGTCAATTATTAATCTTTAGTATCTGCTTCCTAGGAGGACACTTGTTCAAGCTGAGTCTTTCCT-GTACTAAAAGAGTACGAGGAAAAGCTAAGTGGATTCCCCAAAGAGGACTCTGTTAATAACCAGCTGTCCAGCAGGACCCATCTTAACAAAGGTCTAAGAACTGGAGTAAATGTATTGGGGGGCTACCTGTCAAGGTCACGGGACTCAGGAATCTGA Homonota_underwoodi_LJAMMCNP_10931 TAAGAAAAGAGAAGGCAATTCATTTCTGTTTTATCATGTTTTTATGTTGCCTTTCCTCTAAGGATGGATAAATGACACTCTCGACTCTATT----TATTTATTTA---------AAAAAACAAAGAAACATGTCT-GATGTGCTTTACAGCCAA---GACTCTGAGTTGTACCTGAGCAACTTTTCTTAGAGGAAACAACCTATTAATCTATTTGCTAAATCCTCAATTTACAGTCTGGAACACACATTGTCATCAAATAAAAATGCCAAATTGTTTTGTTTTTAAGCATTACCTTCTGATAACTGTTTCATTTTCCATTTCTGCTTTTTCTTGTTCTTGTAAGAGAAAAGAAATGGTTTCCAAATTCCCTCTTCTTGAAGATCATGCTGGATTATAACTTTGACACACTTTCTTTAGAAAAGTCAATTATTAATCTTTAGTATCTGCTTCCTAGGAGGACACTTGTTCAAGCTGAGTCTTTCCT-GTACTAAAAGAGTACGAGGAAAAGCTAAGTGGATTCCCCAAAGAGGACTCTGTTAATAACCAGCTGTCCAGCAGGACCCATCTTAACAAAGGTCTAAGAACTGGAGTAAATGTATTGGGGGGCTACCTGTCAAGGTCACGGGACTCAGGAATCTGA Homonota_whitii_LJAMMCNP_12111 TAAGAAAAGAGAAGGCAATTCATTTCTGTTTTATCATGTTTTTATGTTGCCTTTCCTCTAAGGATTGATAAATGACACTCTAGACTCTATT----TATTTATTTT---------AAAAAACAAACAAACATGTCT-GCTGTGCTTTACAGCCA-TAAGACTCTGAGTTGTACCTGAGCAGCTTTTCTTAGAGGAAAAAACCTATTAATCTATTTGCTAAATCCTCAGTTTACAGTCTGGAACACAGACTGTCATCAAATAAATATGCCAAATTGTTTTGTTTTTAAGCATTACCTTCTGATAACTGTTTCATTTTCCATTTCTGCTTTTTCTTGTTCTTGTAAGAGAAAAGAAATGGTTTCCAAATTCCCTCTTCTTGAAGATCATGCTGGATTATAACTTTGACACACCTTCTTTAGAAAAGTCAATTATTAATCTTTAGTATCTGCTTCCTAGGAGGACATTTGTTCAAGCTAAGTCTTTCCTTGTACTAAAAGAGTATGAGGGAAAGCTAAGTGGATTCCCCAAAGAGGACTCTGTTAATAACCAGCTGTCCAGCAGGACCCATCTTAACAAAGGTCTAAGAACTGGACTAAATGTATTGGGGGGCTACCTGTCAAAGTCACGGGACTCAGGAATCTGA Homonota_williamsii_LJAMMCNP_4467 TAAGAAAAGAGAAGGCAATTCATTTCTGTTTTATCATGTTTTTATGTTGCCTTTCCTCTAAGGATGGATAAATGACACTCTAGACTCTATT----TATTTATTTATTTT-----AAAAAACAATCAAACATGTCT-GCTGTGCTTTACAGCCA-TAAGACTCTGAGTTGTACCTGAGCAGCTTTTCTTAGAGGAAACAACCTATTAATCTATTTGCTAAATCCTCAGTTTACAGTCTGGAACACAGATTGTCATCAAATAAATATGCCAAATTGTTTTGTTTTTAAGCAWTACCTTCTGATAACTGTTTCATTTTCCATTTCTGCTTTTTCTTGTTCTTGTAAGAGAAAAGAAATGGTTTCCAAATTCCCTCTTCTTGAAGATCATGCTGGATTATAACTTTGACACACTTTCTTTAGAAAAGTCAATTATTAATCTTTAGTATCTGCTTCCTAGGAGGACATTTGTTCAAGCTGAGTCTTTCCT-GTACTAAAAGAGTATGAGGGAAAGCTAAGTGGATTCCCCAAAGAGGACGCTGTTAATAACCAGCTGTCCAGCAGGACCCATCTTAACAAAGGTCTAAGAACTGGACTAAATGTATTGGGGGGCTACCTGTCAAAGTCACGGGACTCAGGAATCTGA Homonota_williamsii_LJAMMCNP_6517 ????????????????????????????????????????TTTATGTTGCCTTTCCTCTAAGGATGGATAAATGACACTCTAGACTCTATT----TATTTATTTATTTT-----AAAAAACAATCAAACATGTCT-GCTGTGCTTTACAGCCA-TAAGACTCTGAGTTGTACCTGAGCAGCTTTTCTTAGAGGAAACAACCTATTAATCTATTTGCTAAATCCTCAGTTTACAGTCTGGAACACAGACTGTCATCAAATAAATATGCCAAATTGTTTTGTTTTTAAGCATTACCTTCTGATAACTGTTTCATTTTCCATTTCTGCTTTTTCTTGTTCTTGTAAGAGAAAAGAAATGGTTTCCAAATTCCCTCTTCTTGAAGATCATGCTGGATTATAACTTTGACACACTTTCTTTAGAAAAGTCAATTATTAATCTTTAGTATCTGCTTCCTAGGAGGACATTTGTTCAAGCTGAGTCTTTCCT-GTACTAAAAGAGTATGAGGGAAAGCTAAGTGGATTCCCCAAAGAGGACGCTGTTAATAACCAGCTGTCCAGCAGGACCCATCTTAACAAAGGTCTAAGAACTGGACTAAATKTATTGGGGGG?????????????????????????????????? ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 642; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 642; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 642; END; BEGIN TREES; Title 19b_BI; ID 015b9eeffc0394; LINK Taxa = 19b; TRANSLATE [0] 1 Homonota_andicola_LJAMMCNP_12490, [1] 2 Homonota_andicola_LJAMMCNP_12495, [2] 3 Homonota_borellii_LJAMMCNP_12116, [3] 4 Homonota_borellii_LJAMMCNP_12125, [4] 5 Homonota_darwinii_LJAMMCNP_11432, [5] 6 Homonota_darwinii_LJAMMCNP_9266, [6] 7 Homonota_spa_LJAMMCNP_10577, [7] 8 Homonota_spa_LJAMMCNP_5047, [8] 9 Homonota_rupicola_RUPI_1, [9] 10 Homonota_rupicola_RUPI_2, [10] 11 Homonota_spb_MNHNP_11406, [11] 12 Homonota_spb_MNHNP_11409, [12] 13 Homonota_taragui_LJAMMCNP_14419, [13] 14 Homonota_taragui_LJAMMCNP_14420, [14] 15 Homonota_uruguayensis_UFRGS_1568, [15] 16 Homonota_uruguayensis_UFRGS_2579, [16] 17 Homonota_underwoodi_LJAMMCNP_10923, [17] 18 Homonota_underwoodi_LJAMMCNP_10931, [18] 19 Homonota_whitii_LJAMMCNP_12111, [19] 20 Homonota_williamsii_LJAMMCNP_4467, [20] 21 Homonota_williamsii_LJAMMCNP_6517; TREE con_50_majrule = (((7:0.002283549,8:0.001520966):0.005158715,(11:0.001603785,12:0.001580017):0.003646016):0.0040240565,((17:0.001518768,18:0.002157755):0.004900934,(((1:0.001514455,2:0.003598722,19:0.005572961):0.007516052,(21:0.001643926,(20:0.001566578,(5:0.001600275,6:0.001544441):0.005583095):0.003613693):0.006213847):0.008702338,((3:0.001611006,4:0.001556041):0.003539929,(9:0.001600033,10:0.00160202):0.005533148,(13:0.001561785,14:0.00154509):0.003656462,(15:0.01234245,16:0.003819425):0.009986215):0.005557396):0.01851073):0.0040240565); END; BEGIN TREES; Title 19b_ML; ID 015b9ef2b0a098; LINK Taxa = 19b; TRANSLATE [0] n0 Homonota_andicola_LJAMMCNP_12490, [1] n1 Homonota_andicola_LJAMMCNP_12495, [2] n2 Homonota_borellii_LJAMMCNP_12116, [3] n3 Homonota_borellii_LJAMMCNP_12125, [4] n4 Homonota_darwinii_LJAMMCNP_11432, [5] n5 Homonota_darwinii_LJAMMCNP_9266, [6] n6 Homonota_spa_LJAMMCNP_10577, [7] n7 Homonota_spa_LJAMMCNP_5047, [8] n8 Homonota_rupicola_RUPI_1, [9] n9 Homonota_rupicola_RUPI_2, [10] n10 Homonota_spb_MNHNP_11406, [11] n11 Homonota_spb_MNHNP_11409, [12] n12 Homonota_taragui_LJAMMCNP_14419, [13] n13 Homonota_taragui_LJAMMCNP_14420, [14] n14 Homonota_uruguayensis_UFRGS_1568, [15] n15 Homonota_uruguayensis_UFRGS_2579, [16] n16 Homonota_underwoodi_LJAMMCNP_10923, [17] n17 Homonota_underwoodi_LJAMMCNP_10931, [18] n18 Homonota_whitii_LJAMMCNP_12111, [19] n19 Homonota_williamsii_LJAMMCNP_4467, [20] n20 Homonota_williamsii_LJAMMCNP_6517; TREE tree_1 = (((n16:0.00000065616909875809,n17:0.00000065616909875809):0.0032251273930590254,((n6:0.00000065616909875809,n7:0.00000065616909875809):0.003392418300321872,(n10:0.00000065616909875809,n11:0.00000065616909875809):0.0016030205528411359):0.005118552586565366):0.006998275649689273,(((n18:0.0032261422851945164,(n0:0.00000065616909875809,n1:0.001608882928019006):0.00000065616909875809):0.004877667518484316,(n20:0.00000065616909875809,(n19:0.00000065616909875809,(n4:0.00000065616909875809,n5:0.00000065616909875809):0.0031992998533075874):0.0015921712799730951):0.003832982453377989):0.005879880162392126,((n14:0.009116997472442935,n15:0.0017520920236319187):0.00720954365862207,((n8:0.00000065616909875809,n9:0.00000065616909875809):0.0031763231803872308,((n2:0.00000065616909875809,n3:0.00000065616909875809):0.0015749384819900645,(n12:0.00000065616909875809,n13:0.00000065616909875809):0.0015866253234640096):0.00000065616909875809):0.00000065616909875809):0.00335726052048852):0.006998275649689273); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1493021041827; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 6969217594005545215; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 8297450656993048917; mqVersion 320; checksumv 0 3 632832699 null getNumChars 642 numChars 642 getNumTaxa 21 numTaxa 21 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 329426.0 sumSquares -4.6116860184273459E18 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 184; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1052 838; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #6969217594005545215 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #6969217594005545215; getWindow; tell It; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 868 766; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.arrow; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #6969217594005545215 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 2; setTreeBlockID 015b9ef2b0a098; toggleUseWeights off; endTell; setAssignedID 7444.1493020620349.558419226101784720; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 868 766; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.reroot; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; makeTreeWindow #6969217594005545215 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 015b9eeffc0394; toggleUseWeights off; endTell; setAssignedID 7474.1493020670024.5183510861088403239; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 868 766; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #8297450656993048917 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 868 766; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;