#NEXUS [written Mon Apr 24 10:21:26 CEST 2017 by Mesquite version 3.2 (build 801) at HG17209/172.30.18.79] BEGIN TAXA; TITLE NKTR; DIMENSIONS NTAX=19; TAXLABELS Homonota_andicola_LJAMMCNP_12490 Homonota_andicola_LJAMMCNP_12495 Homonota_borellii_LJAMMCNP_12116 Homonota_borellii_LJAMMCNP_12125 Homonota_darwinii_LJAMMCNP_11424 Homonota_darwinii_LJAMMCNP_9266 Homonota_spa_LJAMMCNP_10528 Homonota_spa_LJAMMCNP_10577 Homonota_rupicola_RUPI_2 Homonota_spb_MNHNP_11406 Homonota_spb_MNHNP_11409 Homonota_taragui_LJAMMCNP_14420 Homonota_underwoodi_LJAMMCNP_10923 Homonota_underwoodi_LJAMMCNP_10931 Homonota_uruguayensis_UFRGS_1568 Homonota_whitii_LJAMMCNP_14387 Homonota_whitii_LJAMMCNP_14388 Homonota_williamsii_LJAMMCNP_6517 Homonota_williamsii_LJAMMCNP_6518 ; END; BEGIN CHARACTERS; TITLE NKTR_Matrix; DIMENSIONS NCHAR=1074; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = ?; MATRIX Homonota_andicola_LJAMMCNP_12490 GAGGAGGGCGAAGCTACGTCGGACTCCGACTCAGAAGTCCTCCTTTCCAG Homonota_andicola_LJAMMCNP_12495 GAGGAGGGCGAAGCTACGTCGGACTCCGACTCAGAAGTCCTCCTTTCCAG Homonota_borellii_LJAMMCNP_12116 GAGGAGGGTGAAGCTACGTCGGACTCTGACTCAGAAGTCCTCCTTTCCAG Homonota_borellii_LJAMMCNP_12125 GAGGAGGGTGAAGCTACGTCGGACTCTGACTCAGAAGTCCTCCTTTCCAG Homonota_darwinii_LJAMMCNP_11424 ?????????????????????????????????????????????????? Homonota_darwinii_LJAMMCNP_9266 ?????????????????????????????????????????????????? Homonota_spa_LJAMMCNP_10528 ?????????????????????????????????????????????????? Homonota_spa_LJAMMCNP_10577 GAGGAGGGTGAAGCTACGTCGGACTCCGACTCCGAAGTCCTCCTTTCCAG Homonota_rupicola_RUPI_2 ?????????????????????????????????????????????????? Homonota_spb_MNHNP_11406 GAGGAGGGTGAAGCTACGTCGGACTCCGACTCCGAAGTCCTCCTTCCCAG Homonota_spb_MNHNP_11409 GAGGAGGGTGAAGCTACATCGGACTCCGACTCCGAAGTCCTCCTTCCCAG Homonota_taragui_LJAMMCNP_14420 GAGGAGGGTGAAGCTACGTCGGACTCCGACTCAGAAGTCCTCCTTTCCAG Homonota_underwoodi_LJAMMCNP_10923 GAGGAGGGTGAAGCTACGTCGGACTCCGACTCAGAAGTCCTCCTTTCCAG Homonota_underwoodi_LJAMMCNP_10931 GAGGAGGGTGAAGCTACGTCGGACTCCGACTCAGAAGTCCTCCTTTCCAG Homonota_uruguayensis_UFRGS_1568 GAGGAGGGTGAAGCTACGTCGGACTCCGACTCAGAAGTCCTCCTTTCCAG Homonota_whitii_LJAMMCNP_14387 GAGGAGGGCGAAGCTACGTCGGACTCCGACTCGGAAGTCCTCCTTTCCAG Homonota_whitii_LJAMMCNP_14388 GAGGAGGGCGAAGCTACGTCGGACTCCGACTCGGAAGTCCTCCTTTCCAG Homonota_williamsii_LJAMMCNP_6517 GAGGAGGGTGAAGCTACGTCGGACTCCGACTCAGAAGTCCTCCTTTCCAG Homonota_williamsii_LJAMMCNP_6518 GAGGAGGGTGAAGCTACGTCGGACTCTGACTCAGAAGTCCTCCTTTCCAG Homonota_andicola_LJAMMCNP_12490 CCTTAAGATGAAGGTGGATTCCTCCTCAGGGACGCTGAAGACAGGCAAGC Homonota_andicola_LJAMMCNP_12495 CCTTAAGATGAAGGTGGATTCCTCCTCAGGGACGCTGAAGACAGGCAAGC Homonota_borellii_LJAMMCNP_12116 CCTTAAGGTGAAGGTGGATTCCTCCTCAGGGACGCTGAAGACACGCAAGC Homonota_borellii_LJAMMCNP_12125 CCTTAAGGTGAAGGTGGATTCCTCCTCAGGGACGCTGAAGACACGCAAGC Homonota_darwinii_LJAMMCNP_11424 ???????????????????????????AGGGACGCTGAAGACAGGCAAGC Homonota_darwinii_LJAMMCNP_9266 ?????????????????????????????????????????????????? Homonota_spa_LJAMMCNP_10528 ?????????????????????????????????????????????????? Homonota_spa_LJAMMCNP_10577 CCTTAAGATGAAGGTGGATTCCTCCTCAGGGACGCTAAAGACAGGCAAGC Homonota_rupicola_RUPI_2 ????????????????????????????????????????????GCAAGC Homonota_spb_MNHNP_11406 CCTWAAGATGAAGGTGGATTCCTCCTCAGGGACGCTAAAGACAGGCAAGC Homonota_spb_MNHNP_11409 CCTWAAGATGAAGGTGGATTCCTCCTCAGGGACGCTAAAGACAGGCAAGC Homonota_taragui_LJAMMCNP_14420 CCTTAAGGTGAAGGTGGATTCCTCCTCAGGGACGCTGAAGACACGCAAGC Homonota_underwoodi_LJAMMCNP_10923 CCTTAAGGTGAAGGTGGATTCCTCCTCAGGGACGCTAAAGACAGGCAAGC Homonota_underwoodi_LJAMMCNP_10931 CCTTAAGGTGAAGGTGGATTCCTCCTCAGGGACACTAAAGACAGGCAAGC Homonota_uruguayensis_UFRGS_1568 CCTTAAGGTGAAGGTGGATTCCTCCTCAGGGACGCTGAAGACACGCAAGC Homonota_whitii_LJAMMCNP_14387 CCTTAAGATGAAGGTGGATTCCTCCTCAGGGACGCTGAAGACAGGCAAGC Homonota_whitii_LJAMMCNP_14388 CCTTAAGATGAAGGTGGATTCCTCCTCAGGGACGCTGAAGACAGGCAAGC Homonota_williamsii_LJAMMCNP_6517 CCTTAAGATGAAGGTGGAT---TCCTCAGGGACGCTGAAGACAGGCAAGC Homonota_williamsii_LJAMMCNP_6518 CCTTAAGATGAAGGTGGA---CTCCTCAGGGACGCTGAAGACAGGCAAGC Homonota_andicola_LJAMMCNP_12490 GGCAGTCACCCCCTTCCGACTCGGGGAGCTCCCTTTCCAATTTGGGCCCT Homonota_andicola_LJAMMCNP_12495 GGCAGTCACCCCCTTCCGACTCGGGGAGCTCCCTTTCCAATTTGGGCCCT Homonota_borellii_LJAMMCNP_12116 GGCGGTCATCCCCTTCCGACTCAGGGAGCTCCCTTTCCAATTCTGGCCCT Homonota_borellii_LJAMMCNP_12125 GGCGGTCATCCCCTTCCGACTCAGGGAGCTCCCTTTCCAATTCTGGCCCT Homonota_darwinii_LJAMMCNP_11424 GGCAGTCACCCCTTTCCGACTCGGGGAGCTCCCTTTCCAATTTGGGCCCT Homonota_darwinii_LJAMMCNP_9266 ?????????????????????????????????TTTCCAATTTGGGCCCT Homonota_spa_LJAMMCNP_10528 ??????????????????????????AGCTCCCTTTCCAATTTGGGCCCT Homonota_spa_LJAMMCNP_10577 GGCAGTCATCCCCTTCTGAAACGGGCAGCTCCCTTTCCAATTTGGGCCCT Homonota_rupicola_RUPI_2 GGCGGTCATCCCCTTCCGACTCGGGGAGCTCCCTTTCCAATTCTGGCCCT Homonota_spb_MNHNP_11406 GGCAGTCATCCCCTTCTGACACGGGGAGCTCCCTTTCCAATTTGGGCCCT Homonota_spb_MNHNP_11409 GGCAGTCATCCCCTTCTGACACGGGGAGCTCCCTTTCCAATTTGGGCCCT Homonota_taragui_LJAMMCNP_14420 GGCGGTCATCCCCTTCCGACTCAGGGAGCTCCCTTTCCAATTCTGGCCCT Homonota_underwoodi_LJAMMCNP_10923 GGCAGTCATCCCCTTCCGACTCGGGGAGCTCCCTTTCCAATTCGGGCCCT Homonota_underwoodi_LJAMMCNP_10931 GGCAGTCATCCCCTTCCGACTCGGGGAGCTCCCTTTCCAATTCGGGCCCT Homonota_uruguayensis_UFRGS_1568 GGCGGTCATCCCCTTCCGACTCGGGGAGCTCCCTTTCCAATTCTGGCCCT Homonota_whitii_LJAMMCNP_14387 GGCAGTCACCCCCTTCCGACTCGGGGAGCTCCCTTTCCAATTTGGGCCCT Homonota_whitii_LJAMMCNP_14388 GGCAGTCACCCCCTTCCGACTCGGGGAGCTCCCTTTCCAATTTGGGCCCT Homonota_williamsii_LJAMMCNP_6517 GGCAGTCACCCCTTTCCGACTCGGGGAGCTCCCTTTCCAATTTGGGCCCT Homonota_williamsii_LJAMMCNP_6518 GGCAGTCACCCCTTTCCGACTCGGGGAGCTCCCTTTCCAATTTGGGCCCT Homonota_andicola_LJAMMCNP_12490 CAGGGAAAATCAAGGAAGCAAAAGCTCGGGTCCAAGAAGAACCTCAAAAA Homonota_andicola_LJAMMCNP_12495 CAGGGAAAATCAAGGAAGCAAAAGCTCGGGTCCAAGAAGAACCTCAAAAA Homonota_borellii_LJAMMCNP_12116 CAGGGAAAATCAAGGAAGCAAAAGCTCGGGTCCAAGAAGAACCTCAAAAA Homonota_borellii_LJAMMCNP_12125 CAGGGAAAATCAAGGAAGCAAAAGCTCGGGTCCAAGAAGAACCTCAAAAA Homonota_darwinii_LJAMMCNP_11424 CAGGGAAAATCACGGAAGCAAAAGCTGGGGTCCAAGAAGAACCTCAAAAA Homonota_darwinii_LJAMMCNP_9266 CAGGGAAAATCACGGAAGCAAAAGCTGGGGTCCAAGAAGAACCTCAAAAA Homonota_spa_LJAMMCNP_10528 CAGGGAAAATCAAGGAAGCAAAAGCTCGGGTCCAAGAAGAACCTCAAAAA Homonota_spa_LJAMMCNP_10577 CAGGGAAAATCAAGGAAGCAAAAGCTCGGGTCCAAGAAGAACCTCAAAAA Homonota_rupicola_RUPI_2 CAGGGAAAATCAAGGAAGCAAAAGCTCGGGTCCAAGAAGAACCTCAAAAA Homonota_spb_MNHNP_11406 CAGGGAAAATCAAGGAAGCAAAAGCTTGGGTCCAAGAAGAACCTCAAAAA Homonota_spb_MNHNP_11409 CAGGGAAAATCAAGGAAGCAAAAGCTCGGGTCCAAGAAGAACCTCAAAAA Homonota_taragui_LJAMMCNP_14420 CAGGGAAAATCAAGGAAGCAAAAGCTCGGGTCCAAGAAGAACCTCAAAAA Homonota_underwoodi_LJAMMCNP_10923 CAGGGAAAATCAAGGAAGCAAAAGCTCGGGTCCAAGAAGAACCTCAAAAA Homonota_underwoodi_LJAMMCNP_10931 CAGGGAAAATCAAGGAAGCAAAAGCTCGGGTCCAAGAAGAACCTCAAAAA Homonota_uruguayensis_UFRGS_1568 CAGGGAAAATCAAGGAAGCAAAAGCTCGGGTCCAAGAAGAACCTCAAAAA Homonota_whitii_LJAMMCNP_14387 CAGGGAAAATCAAGGAAGCAAAAGCTCGGGTCCAAGAAGAACCYCAAAAA Homonota_whitii_LJAMMCNP_14388 CAGGGAAAATCAAGGAAGCAAAAGCTCGGGTCCAAGAAGAACCCCAAAAA Homonota_williamsii_LJAMMCNP_6517 CAGGGAAAATCACGGAAGCAAAAGCTGGGGTCCAAGAAGAACCTCAAAAA Homonota_williamsii_LJAMMCNP_6518 CGGGGAAAATCACGGAAGCAAAAGCTGGGGTCCAAGAAGAACCTCAAAAA Homonota_andicola_LJAMMCNP_12490 GGCACATTCCAAGAAAGCGAAAGAGAAATCGAAGGGTAAAAAAGAGAAGA Homonota_andicola_LJAMMCNP_12495 GGCACATTCCAAGAAAGCGAAAGAGAAATCGAAGGGTAAAAAAGAGAAGA Homonota_borellii_LJAMMCNP_12116 GGCCCATTCCAAGAAAGCGAAAGAGAAATCGAAGGGTAAAAAAGAGAAGA Homonota_borellii_LJAMMCNP_12125 GGCCCATTCCAAGAAAGCGAAAGAGAAATCGAAGGGTAAAAAAGAGAAGA Homonota_darwinii_LJAMMCNP_11424 GGCACATTCCAAGAAAGCGAAAGAGAAATCAAAGGGTAAAAAAGAGAAGA Homonota_darwinii_LJAMMCNP_9266 GGCACATTCCAAGAAAGCGAAAGAGAAATCAAAGGGTAAAAAAGAGAAGA Homonota_spa_LJAMMCNP_10528 GGCACATTCCAAGAAAGCGAAGGAGAAATCGAAGGGTAAAAAAGAGAAGA Homonota_spa_LJAMMCNP_10577 GACACATTCCAAGAAAGCAAAGGAGAAATCGAAGGGTAAAAAAGAGAAGA Homonota_rupicola_RUPI_2 GGCCCATTCCAAGAAAGCGAAAGAGAAATCGAAGGGTAAAAAAGAGAAGA Homonota_spb_MNHNP_11406 GGCACATTCCAAGAAAGCGAAGGAGAAATCGAAGGGTAAGAAAGAGAAGA Homonota_spb_MNHNP_11409 GGCACATTCCAAGAAAGCGAAGGAGAAATCGAAGGGTAAGAAAGAGAAGA Homonota_taragui_LJAMMCNP_14420 GGCCCATTCCAAGAAAGCGAAAGAGAAATCGAAGGGTAAAAAAGAGAAGA Homonota_underwoodi_LJAMMCNP_10923 GGCCCATTCCAAGAAAGCGAAGGAGAAATCGAAGGGTAAAAAAGAGAAGA Homonota_underwoodi_LJAMMCNP_10931 GGCCCATTCCAAGAAAGCGAAGGAGAAATCGAAGGGTAAAAAAGAGAAGA Homonota_uruguayensis_UFRGS_1568 GACCCATTCCAAGAAAGCGAAAGAGAAATCGAAGGGTAAAAAAGAGAAGA Homonota_whitii_LJAMMCNP_14387 GGCACATTCCAAGAAAGCGAAAGAGAAATCGAAGGGTAAAAAAGAGAAGA Homonota_whitii_LJAMMCNP_14388 GGCACATTCCAAGAAAGCGAAAGAGAAATCGAAGGGTAAAAAAGAGAAGA Homonota_williamsii_LJAMMCNP_6517 GGCACATTCCAAGAAAGCGAAAGAGAAATCAAAGGGTAAAAAAGAGAAGA Homonota_williamsii_LJAMMCNP_6518 GGCACATTCCAAGAAAGCGAAAGAGAAATCAAAGGGTAAAAAAGAGAAGA Homonota_andicola_LJAMMCNP_12490 AGCACAAGGCCCCAAAGCAAAAGGAAACGTTTCATTGGCAGCCTCCGCTG Homonota_andicola_LJAMMCNP_12495 AGCACAAGGCCCCAAAGCAAAAGGAAACGTTTCATTGGCAGCCTCCGCTG Homonota_borellii_LJAMMCNP_12116 AGCATAAGGCCCCAAAGCAAAAGGAAACGTTTCATTGGCAGCCTCCGTTG Homonota_borellii_LJAMMCNP_12125 AGCATAAGGCCCCAAAGCAAAAGGAAACGTTTCATTGGCAGCCTCCGTTG Homonota_darwinii_LJAMMCNP_11424 AGCATAAGGCCCCAAAGCAAAAGGAAACGTTTCATTGGCAGCCTCCGCTG Homonota_darwinii_LJAMMCNP_9266 AGCATAAGGCCCCAAAGCAAAAGGAAACGTTTCATTGGCAGCCTCCGCTG Homonota_spa_LJAMMCNP_10528 AGCATAAGGCCCCRAAGCAAAAGGAAACGTTTCATTGGCAGCCTCCGCTG Homonota_spa_LJAMMCNP_10577 AGCATAAGGCCCCAAAGCAAAAGGAAACGTTTCATTGGCAGCCTCCGCTG Homonota_rupicola_RUPI_2 AGCATAAGGCCCCAAAGCAAAAGGAAACGTTTCATTGGCAGCCTCCGCTG Homonota_spb_MNHNP_11406 AGCATAAGGCCCCGAAGCAAAAGGAAACGTTTCATTGGCAGCCTCCGCTG Homonota_spb_MNHNP_11409 AGCATAAGGCCCCGAAGCAAAAGGAAACGTTTCATTGGCAGCCTCCGCTG Homonota_taragui_LJAMMCNP_14420 AGCATAAGGCCCCAAAGCAAAAGGAAACGTTTCATTGGCAGCCTCCGCTG Homonota_underwoodi_LJAMMCNP_10923 AGCATAAGGCCCCRAAGCAAAAGGAAACGTTTCATTGGCAGCCTCCGCTG Homonota_underwoodi_LJAMMCNP_10931 AGCATAAGGCCCCAAAGCAAAAGGAAACGTTTCATTGGCAGCCTCCGCTG Homonota_uruguayensis_UFRGS_1568 AGCATAAGGCCCCAAAGCAAAAGGAAACGTTTCATTGGCAGCCTCCGCTG Homonota_whitii_LJAMMCNP_14387 AGCACAAGGCCCCAAAGCAAAAGGAAACGTTTCATTGGCAGCCTCCGCTG Homonota_whitii_LJAMMCNP_14388 AGCACAAGGCCCCAAAGCAAAAGGAAACGTTTCATTGGCAGCCTCCGCTG Homonota_williamsii_LJAMMCNP_6517 AGCATAAGGCCCCAAAGCAAAAGGAAACGTTTCATTGGCAGCCTCCGCTG Homonota_williamsii_LJAMMCNP_6518 AGCATAAGGCCCCAAAGCAAAAGGAAACGTTTCATTGGCAGCCTCCGCTG Homonota_andicola_LJAMMCNP_12490 GAATTTGGGGAGGAGGAAGAGGAGGAAGAGGTTACCGTGAAACCTGCCAC Homonota_andicola_LJAMMCNP_12495 GAATTTGGGGAGGAGGAAGAGGAGGAAGAGGTTACCGTGAAACCTGCCAC Homonota_borellii_LJAMMCNP_12116 GAATTTGGGGAGGAGGAAGAGGAGGAAGAGATTACCGTGAAACCTACCAC Homonota_borellii_LJAMMCNP_12125 GAATTTGGGGAGGAGGAAGAGGAGGAAGAGATTACCGTGAAACCTACCAC Homonota_darwinii_LJAMMCNP_11424 GAATTTGGGGAGGAGGAAGAGGAGGAAGAGATTACCGCGAAACCTGCCAC Homonota_darwinii_LJAMMCNP_9266 GAATTTGGGGAGGAGGAAGAGGAGGAAGAGATTACCGCGAAACCTGCCAC Homonota_spa_LJAMMCNP_10528 GAATTTGGGGAGGAGGAAGAGGAGGAAGAGATTACYGTGAAACCTGCCAC Homonota_spa_LJAMMCNP_10577 GAATTTGGGGAGGAGGAAGAGGAGGAAGAGATTACCGTGAAACCTGCCAC Homonota_rupicola_RUPI_2 GAATTTGGGGAGGAGGAAGAGGAGGAAGAGATTACCGTGAAACCTGCCAC Homonota_spb_MNHNP_11406 GAATTTGGGGAGGAGGAAGAGGAGGAAGAGATTACCGTGAAACCTGCCAC Homonota_spb_MNHNP_11409 GAATTTGGGGAGGAGGAAGAGGAGGAAGAGATTACCRTGAAACCTGCCAC Homonota_taragui_LJAMMCNP_14420 GAATTTGGGGAGGAGGAAGAGGAGGAAGAGATTACCGTGAAACCTGCCAC Homonota_underwoodi_LJAMMCNP_10923 GAATTTGGGGAGGAGGAAGAGGAGGAAGAGATTACCGKGAAACCTGCCAC Homonota_underwoodi_LJAMMCNP_10931 GAATTTGGGGAGGAGGAAGAGGAGGAAGAGATTACCGCGAAACCTGCCAC Homonota_uruguayensis_UFRGS_1568 GAATTTGGGGAGGAGGAAGAGGAGGAAGAGATTACCGTGAAACCTGCCAC Homonota_whitii_LJAMMCNP_14387 GAATTTGGGGAGGAGGAAGAGGAGGAAGAGGTTACCGTGAAACCTGCCAC Homonota_whitii_LJAMMCNP_14388 GAATTTGGGGAGGAGGAAGAGGAGGAAGAGGTCACCGTGAAACCTGCCAC Homonota_williamsii_LJAMMCNP_6517 GAATTTGGGGAGGAGGAAGAGGAGGAAGAGATTACCGCGAAACCTGCCAC Homonota_williamsii_LJAMMCNP_6518 GAATTTGGGGAGGAGGAAGAGGAGGAAGAGATTACCGCGAAACCTGCCAC Homonota_andicola_LJAMMCNP_12490 CAAGGAGGAGAAAGCCGCTGCAGACGCCAAGGAGAAAAATCAGGACCACG Homonota_andicola_LJAMMCNP_12495 CAAGGAGGAGAAAGCCGCTGCAGACGCCAAGGAGAAAAATCAGGACCACG Homonota_borellii_LJAMMCNP_12116 CAAGGAGGAGAAAGCCGCTGCGGACGCCAAGGAGAAAAATCAGGACCACG Homonota_borellii_LJAMMCNP_12125 CAAGGAGGAGAAAGCCGCTGCGGACGCCAAGGAGAAAAATCAGGACCACG Homonota_darwinii_LJAMMCNP_11424 CAAGGAGGAGAAAGCCGCTGCGGACGCCAAGGAGAAAAACCAGGACCACG Homonota_darwinii_LJAMMCNP_9266 CAAGGAGGAGAAAGCCGCTGCGGACGCCAAGGAGAAAAACCAGGACCACG Homonota_spa_LJAMMCNP_10528 CAAGGAGGAGAAAGCCGCTGCGGACGCCAAGGAGAAAAACCAGGACCACG Homonota_spa_LJAMMCNP_10577 CAAGGAGGAGAAAGCCGCTGCGGACGCCAAGGAGAAAAACCAGGACCACG Homonota_rupicola_RUPI_2 CAAGGAGGAGAAAGCCGCTGCGGACGCCAAGGAGAAAAATCAGGACCATG Homonota_spb_MNHNP_11406 CAAGGAGGAGAAAGCCGCTGCGGACGCCAAGGAGAAAAACCAGGACCACG Homonota_spb_MNHNP_11409 CAAGGAGGAGAAAGCCGCTGCGGACGCCAAGGAGAAAAACCAGGACCACG Homonota_taragui_LJAMMCNP_14420 CAAGGAGGAGAAAGCCGCTGCAGACGCCAAGGAGAAAAATCAGGACCACG Homonota_underwoodi_LJAMMCNP_10923 CAAGGAGGAGAAAGCCGCTGCGGACGCCAAGGAGAAAAATCAGGACCACG Homonota_underwoodi_LJAMMCNP_10931 CAAGGAGGAGAAAGCCGCTGCGGACGCCAAGGAGAAAAATCAGGACCACG Homonota_uruguayensis_UFRGS_1568 CAAGGAGGAGAAAGCCGCTGCGGACGCCAAGGAGAAAAATCAGGACCACG Homonota_whitii_LJAMMCNP_14387 CAAGGAGGAGAAAGCCGCTGCAGACGCCAAGGAGAAAAATCAGGACCACG Homonota_whitii_LJAMMCNP_14388 CAAGGAGGAGAAAGCCGCTGCAGACGCCAAGGAGAAAAATCAGGACCACG Homonota_williamsii_LJAMMCNP_6517 CAAGGAGGAGAAAGCCGCTGCGGACGCCAAGGAGAAAAACCAGGACCACG Homonota_williamsii_LJAMMCNP_6518 CAAGGAGGAGAAAGCCGCTGCGGACGCCAAGGAGAAAAACCAGGACCACG Homonota_andicola_LJAMMCNP_12490 GTTCTCAGAGCAGCGAGGTGATAAAAAAGCCACCGCGAGATGTTGAAAAG Homonota_andicola_LJAMMCNP_12495 GTTCTCAGAGCAGYGAGGTGATAAAAAAGCCACCGCGAGATGTTGAAAAG Homonota_borellii_LJAMMCNP_12116 GTTCTGAGAGCAGCCAGGTGATAAAAAAGCCACCGCGAGATGTTGAAAAG Homonota_borellii_LJAMMCNP_12125 GTTCTGAGAGCAGCCAGGTGATAAAAAAGCCACCGCGAGATGTTGAAAAG Homonota_darwinii_LJAMMCNP_11424 GTTCTGAGAGCAGCGAGGTGATAAAAAAGCCACCACGGGATGTTGAAAAG Homonota_darwinii_LJAMMCNP_9266 GTTCTGAGAGCAGCGAGGTGATAAAAAAGCCACCGCGGGATGTTGAAAAG Homonota_spa_LJAMMCNP_10528 GTTCTCAGAGCAGYGAGGTGATAAAAARGCCRCSGCGAGACGTTGAAAAG Homonota_spa_LJAMMCNP_10577 GTTCTCAGAGCAGTGAGGTGATAAAAAAGCCGCGGCGAGACGTTGAAAAG Homonota_rupicola_RUPI_2 GTTCTGAGAGCAGCCAGGTGATAAAAAAGCCACCGCGAGATGTTGAAAAG Homonota_spb_MNHNP_11406 GTTCTCAGAGCAGCGAGGTGATAAAAAGGCCACCGCGAGACGTTGAAAAG Homonota_spb_MNHNP_11409 GTTCTCAGAGCAGCGAGGTGATAAAAAGGCCACCGCGAGACGTTGAAAAG Homonota_taragui_LJAMMCNP_14420 GTTCTGAGAGCAGCCAGGTGATAAAAAAGCCACCGCGAGATGTTGAAAAG Homonota_underwoodi_LJAMMCNP_10923 GTTCTCAGAGCAGCGAGGTGATAAAAAAGCCACCGCGAGACGTTGAAAAG Homonota_underwoodi_LJAMMCNP_10931 GTTCTCAGAGCAGCGAGGTGATAAAAAAGCCACCGCGAGACGTTGAAAAG Homonota_uruguayensis_UFRGS_1568 GTTCTGAGAGCAGCCAGGTGATAAAAAAGCCACCGCGAGATGTTGAAAAG Homonota_whitii_LJAMMCNP_14387 GTTCTCAGAGCAGCGAGGTGATAAAAAAGCCACCGCGAGATGTTGAAAAG Homonota_whitii_LJAMMCNP_14388 GTTCTCAGAGCAGCGAGGTGATAAAAAAGCCACCGCGAGATGTTGAAAAG Homonota_williamsii_LJAMMCNP_6517 GTTCTGAGAGCAGCGAGGTGATAAAAAAGCCACCGCGGGATGTTGAAAAG Homonota_williamsii_LJAMMCNP_6518 GTTCTGAGAGCAGCGAGGTGATAAAAAAGCCACCGCGGGATGTTGAAAAG Homonota_andicola_LJAMMCNP_12490 CTCCATGAAGAGAAGATGCCCCAGGAAGAAGCTGTGGGCAGAAAACCCGC Homonota_andicola_LJAMMCNP_12495 CTCCATGAAGAGAAGATGCCCCAGGAAGAAGCTGTGGGCAGAAAACCCGC Homonota_borellii_LJAMMCNP_12116 CTCCATGAAGAGAAGATGTCCCAGGAAGAAGCTGTGGGCAGAAAACCCGC Homonota_borellii_LJAMMCNP_12125 CTCCATGAAGAGAAGATGTCCCAGGAAGAAGCTGTGGGCAGAAAACCCGC Homonota_darwinii_LJAMMCNP_11424 CTCCATGAAGAGAAGATGCCCCGGGAAGAAGCTGTAGGCAGAAAACCCGC Homonota_darwinii_LJAMMCNP_9266 CTCCATGAAGAGAAGATGCCCCGGGAAGAAGCTGTGGGCAGAAAACCCGC Homonota_spa_LJAMMCNP_10528 CTCCATGAAGAGAAGATGCCCCAGGAAGAAGCGGTGGGCAGAAAACCCGC Homonota_spa_LJAMMCNP_10577 CTCCATGAAGAGAAGATGCCCCAGGAAGAAGCGGTGGGCAGAAAACCCGC Homonota_rupicola_RUPI_2 CTCCATGAAGAGAAGAAGTCCCAGGAAGAAGCTGTGGGCAGAAAACCCAC Homonota_spb_MNHNP_11406 CTCCATGAAGAGAAGATGCCCCAGGAAGAAGCGGTGGGCAGAAAACCCGC Homonota_spb_MNHNP_11409 CTCCATGAAGAGAAGATGCCCCAGGAAGAAGCGRTGGGCAGAAAACCCGC Homonota_taragui_LJAMMCNP_14420 CTCCATGAAGAGAAGATGTCCCAGGAAGAAGCTGTGGGCAGAAAACCCGC Homonota_underwoodi_LJAMMCNP_10923 CTCCAAGAAGAGAAGATGCCCCAGRAAGAAGCGGTGSGCAGAAAACCCGC Homonota_underwoodi_LJAMMCNP_10931 CTCCAAGAAGAGAAGATGCCCCAGAAAGAAGCGGTGGGCAGAAAACCCGC Homonota_uruguayensis_UFRGS_1568 CTCCATGAAGAGAAGCTGTCCCAGGAAGAAGCTGTGGGCAGAAAACCCGC Homonota_whitii_LJAMMCNP_14387 CTCCATGARGAGAAGATGCCCCAGGAAGAAGCTGTGGGCAGAAAACCCGC Homonota_whitii_LJAMMCNP_14388 CTCCATGAAGAGAAGATGCCCCAGGAAGAAGCTGTGGGCAGAAAACCCGC Homonota_williamsii_LJAMMCNP_6517 CTCCATGAAGAGAAGATGCCCCGGGAAGAAGCTGTGGGCAGAAAACCCGC Homonota_williamsii_LJAMMCNP_6518 CTCCATGAAGAGAAGATGCCCCGGGAAGAAGCTGTRGGCAGAAAACCCGC Homonota_andicola_LJAMMCNP_12490 AGCCCTTAAGAAACAGGGTAAAAATAACAAGGAGCAGCCGACTTCAGCTC Homonota_andicola_LJAMMCNP_12495 AGCCCTTAAGAAACAGGGTAAAAATAACAAGGAGCAGCCGACTTCAGCTC Homonota_borellii_LJAMMCNP_12116 AGCCCTTAAGAAACATAGTAAAAATAACAAGGAGCAGCCGACTTCAGCTC Homonota_borellii_LJAMMCNP_12125 AGCCCTTAAGAAACATAGTAAAAATAACAAGGAGCAGCCGACTTCAGCTC Homonota_darwinii_LJAMMCNP_11424 AGCCCTTAAGAAACATAGTAAAAATAACAAGGAGCAGCCGACTTCAGCTC Homonota_darwinii_LJAMMCNP_9266 AGCCCTTAAGAAACATAGTAAAAATAACAAGGAGCAGCCGACTTCAGCTC Homonota_spa_LJAMMCNP_10528 AGCCCTGAAGAAACGTCGTAAAAATGACGAGGAGCAGCCGGCTTCAGCTC Homonota_spa_LJAMMCNP_10577 AGCCCTGAAGAAACGTCGTAAAAATGACGAGGAGCAGCCGGCTTCAGCTC Homonota_rupicola_RUPI_2 AGCCCTTAAGAAACATAGTAAAAATAACAAGGAGCAGCCGACTTCAGCTC Homonota_spb_MNHNP_11406 AGCCCTGAAGAAACGTCGTAAAAATAACGAGCAGCAGCCGACTTCAGCTC Homonota_spb_MNHNP_11409 AGCCCTGAAGAAACGTCGTAAAAATAACGAGSAGCAGCCGACTTCAGCTC Homonota_taragui_LJAMMCNP_14420 AGCCCTTAAGAAACATAGTAAAAATAACAAGGAGCAGCCGACTTCAGCTC Homonota_underwoodi_LJAMMCNP_10923 AGCCCTGAAGAAACATAGTAAAAATAACGAGGAGCAGCCGACTTCAGCTC Homonota_underwoodi_LJAMMCNP_10931 AGCCCTGAAGAAACATAGTAAAAATAACGAGGAGCAGCCGACTTCAGCTC Homonota_uruguayensis_UFRGS_1568 AGCCCTTAAGAAACATAGTAAAAATAACAAGGAGCAGCCGACTTCAGCTC Homonota_whitii_LJAMMCNP_14387 AGCCCTTAAGAAACATGGTAAAAATAACAAGGAGCAGCCGACTTCAGCTC Homonota_whitii_LJAMMCNP_14388 AGCCCTTAAGAAACATGGTAAAAATAACAAGGAGCAGCCGACTTCAGCTC Homonota_williamsii_LJAMMCNP_6517 AGCCCTTAAGAAACATAGTAAAAATAACAAGGAGCAGCCAACTTCAGCTC Homonota_williamsii_LJAMMCNP_6518 AGCCCTTAAGAAACATAGTAAAAATAACAAGGAGCAGCCGACTTCAGCTC Homonota_andicola_LJAMMCNP_12490 CTACTCTAACACCAGTTAAAAATGTGGATGTTTCAGGAAGTCCCAAGGGT Homonota_andicola_LJAMMCNP_12495 CTACTCTAACACCAGTTAAAAATGTGGATGTTTCAGGAAGTCCCAAGGGT Homonota_borellii_LJAMMCNP_12116 CTACTCTAACACCAGTTAAAAATGTGGAYGTTTCAGGAAGTCCCAAGGGT Homonota_borellii_LJAMMCNP_12125 CTACTCTAACACCAGTTAAAAATGTGGATGTTTCAGGAAGTCCCAAGGGT Homonota_darwinii_LJAMMCNP_11424 CTACTCTAACGCCAGTTAAAAATGTGGATGTTTCAGGAAGTCCCAAGGGT Homonota_darwinii_LJAMMCNP_9266 CTACTCTAACGCCAGTTAAAAATGTGGATGTTTCAGGAAGTCCCAAGGGT Homonota_spa_LJAMMCNP_10528 CTRCTCTAACACCAGTTAAAAACGTGGATGTTTYAGGAAGTCCCAAGGGT Homonota_spa_LJAMMCNP_10577 CTACTCTAACACCAGTTAAAAACGTGGATGTTTCAGGAAGTCCCAAGGGT Homonota_rupicola_RUPI_2 CTACTCTAACACCAGTTAAACATGTGGATGTTTCAGGAAGTCCCAAGGGT Homonota_spb_MNHNP_11406 CTGCTCTAACACCAGTTAAAAATGTGGACGTTTCAGGAAGTCCCAAGGGT Homonota_spb_MNHNP_11409 CTGCTYTAACACCAGTTAAAAAYGTGGACGTTTCAGGAAGTCCCAAGGGT Homonota_taragui_LJAMMCNP_14420 CTACTCTAACACCAGTTAAAAATGTGGATGTTTCAGGAAGTCCCAAGGGT Homonota_underwoodi_LJAMMCNP_10923 CTACTCTAACACCAGTTAAAAACGTGGATGTTTCAGGAAGTCCCAAGGGT Homonota_underwoodi_LJAMMCNP_10931 CTACTCTAACACCAGTTAAAAACGTGGATGTTTCAGGAAGTCCCAAGGGT Homonota_uruguayensis_UFRGS_1568 CTACTCTAACACCAGTTAAAAATGTGGATGTTTCAGGAAGTCCCAAGGGT Homonota_whitii_LJAMMCNP_14387 CTACTCTAACACCAGTTAAAAATGTGGATGTTTCAGGAAGTCCCAAGGGT Homonota_whitii_LJAMMCNP_14388 CTACTCTAACACCAGTTAAAAATGTGGATGTTTCAGGAAGTCCCAAGGGT Homonota_williamsii_LJAMMCNP_6517 CTACTCTAATGCCAGTTAAAAATGTGGATGTTTCAGGAAGTCCCAAGGGT Homonota_williamsii_LJAMMCNP_6518 CTACTCTAACGCCAGTTAAAAATGTGGATGTTTCAGGAAGTCCCAAGGGT Homonota_andicola_LJAMMCNP_12490 GCCAAAGCAAATAACGGAAGCGAGGCAGATGTGACTCAGATGGATGACAT Homonota_andicola_LJAMMCNP_12495 GCCAAAGCAAATAACGGAAGCGAGGCAGATGTGACTCAGATGGATGACAT Homonota_borellii_LJAMMCNP_12116 GCCAAAGCACATAACGGAAGCGAGGCAGATGTGACTCAGATGGATGACAT Homonota_borellii_LJAMMCNP_12125 GCCAAAGCACATAACGGAAGCGAGGCAGATGTGACTCAGATGGATGACAT Homonota_darwinii_LJAMMCNP_11424 GCCAAAGCAAATAACGGAAGCGAGGCCGATGTGACTCAGATGGATGACAT Homonota_darwinii_LJAMMCNP_9266 GCCAAAGCAAATAACGGAAGCGAGGCCGATGTGACTCAGATGGATGACAT Homonota_spa_LJAMMCNP_10528 GCCAAAGCAAATAACGGAAGCGAGGCAGATGTGACTCAGATGGATGACAT Homonota_spa_LJAMMCNP_10577 GCCAAAGCAAATAACGGAAGCGAGGCAGATGTGACTCAGATGGATGACAT Homonota_rupicola_RUPI_2 GCCAAAGCACATAACGGAAGCGAGGCAGATGTGACTCAGATGGATGACAT Homonota_spb_MNHNP_11406 GCCAAAGCAAATAACGGAAGCGAGGCAGATGTGACTCAGATGGATGACAT Homonota_spb_MNHNP_11409 GCCAAAGCAAATAACGGAAGCGAGGCAGATGTGACTCAGATGGATGACAT Homonota_taragui_LJAMMCNP_14420 GCCAAAGCACATAACGGAAGCGAGGCAGATGTGACTCAGATGGATGACAT Homonota_underwoodi_LJAMMCNP_10923 GCCAAAGCAAATAACGGAAGCGAGGCAGATGTGACTCAGATGGATGACAT Homonota_underwoodi_LJAMMCNP_10931 GCCAAAGCAAATAACGGAAGCGAGGCAGATGTGACTCAGATGGATGACAT Homonota_uruguayensis_UFRGS_1568 GCCAAAGCACATAACGGAAGCGAGGCAGATGTGACTCAGATGGATGACAT Homonota_whitii_LJAMMCNP_14387 GCCAAAGCAAATAACGGAAGCGAGGCAGATGTGACTCAGATGGATGACAT Homonota_whitii_LJAMMCNP_14388 GCCAAAGCAAATAACGGAAGCGAGGCAGATGTGACTCAGATGGATGACAT Homonota_williamsii_LJAMMCNP_6517 GCCAAAGCAAATAACGGAAGCGAGGCCGATGTGACTCAGATGGATGACAT Homonota_williamsii_LJAMMCNP_6518 GCCAAAGCAAATAACGGAAGCGAGGCCGATGTGACTCAGATGGATGACAT Homonota_andicola_LJAMMCNP_12490 GGAGATCTGTACCCCAGACCACAACTCGCCCGTGAAGGTAGTAGATCTGG Homonota_andicola_LJAMMCNP_12495 GGAGATCTGTACCCCAGACCACAACTCGCCCGTGAAGGTAGTAGATCTGG Homonota_borellii_LJAMMCNP_12116 GGAGATCTGTACCCCAGACCACAACTCACCCGTGAAGGT---AGATCTGG Homonota_borellii_LJAMMCNP_12125 GGAGATCTGTACCCCAGACCACAACTCACCCGTGAAGGT---AGATCTGG Homonota_darwinii_LJAMMCNP_11424 GGAGATYTGTACCCCRGACCACAACTCACCCGTGAAGGT---AGATCTGG Homonota_darwinii_LJAMMCNP_9266 GGAGATCTGTACCCCAGACCACAACTCGCCCGTGAAGGT---AGATCTGG Homonota_spa_LJAMMCNP_10528 GGAGATCTGTACCCCAGACCACAACTCACCCGTGAAGGTTGTAGATCTGG Homonota_spa_LJAMMCNP_10577 GGAGATCTGTACCCCAGACCACAACTCACCCGTGAAGGTTGTAGATCTGG Homonota_rupicola_RUPI_2 GGAGATCTGTACCCCAGACCACAACTCACCCGTGAAGGT---AGATCTGG Homonota_spb_MNHNP_11406 GGAGATCTGTACCCCAGACCACAACTCACCCGTGAAGGTTGTAGATCTGG Homonota_spb_MNHNP_11409 GGAGATCTGTACCCCAGACCACAACTCACCCGTGAAGGTTGTAGATCTGG Homonota_taragui_LJAMMCNP_14420 GGAGATCTGTACCCCAGACCACAACTCACCCGTGAAGGT---AGATCTGG Homonota_underwoodi_LJAMMCNP_10923 GGAGATCTGTACCCCAGACCACAACTCACCCGTGAAGGTAGTAGATCTGG Homonota_underwoodi_LJAMMCNP_10931 GGAGATCTGTACCCCAGACCACAACTCACCCGTGAAGGTAGTAGATCTGG Homonota_uruguayensis_UFRGS_1568 GGAGATCTGTACCCCAGACCACAACTCACCCGTGAAGGT---AGATCTGG Homonota_whitii_LJAMMCNP_14387 GGAGATCTGTACCCCAGACCACAACTCGCCCGTGAAGGTAGTAGATCTGG Homonota_whitii_LJAMMCNP_14388 GGAGATCTGTACCCCAGACCACAACTCGCCCGTGAAGGTAGTAGATCTGG Homonota_williamsii_LJAMMCNP_6517 GGAGATCTGTACCCCAGACCACAACTCGCCCGTGAAGGT---AGATCTGG Homonota_williamsii_LJAMMCNP_6518 GGAGATCTGTACCCCAGACCACAACTCACCCGTGAAGGT---AGATCTGG Homonota_andicola_LJAMMCNP_12490 ATCTTTCACCAGTCAGTCTGAAGGTAAACCTGCCAGCTGTCAAAGTTAGG Homonota_andicola_LJAMMCNP_12495 ATCTTTCACCAGTCAGTCTGAAGGTAAACCTGCCAGCTGTCAAAGTTAGG Homonota_borellii_LJAMMCNP_12116 ATCCTTCACCAGCCAGTCTGAAGGTAAACCTGCCCGCTGTTAAAGTTAGG Homonota_borellii_LJAMMCNP_12125 ATCCTTCACCAGCCAGTCTGAAGGTAAACCTGCCCGCTGTTAAAGTTAGG Homonota_darwinii_LJAMMCNP_11424 ATCTTTCACCAGTCAGTCTGAAGGTAAACCTGCCAGCTGTCAAAGTTAGG Homonota_darwinii_LJAMMCNP_9266 ATCTCTCACCAGTCAGTCTGAAGGTAAACCTGCCAGCTGTCAAAGTTAGG Homonota_spa_LJAMMCNP_10528 ATCTTTCACCAGTCAGTCTGAAGGTAAACCTTCCAGCTGTTAAAGGTAGG Homonota_spa_LJAMMCNP_10577 ATCTTTCACCAGTCAGTCTGAAGGTAAACCTTCCAGCTGTTAAAGGTAGG Homonota_rupicola_RUPI_2 ATCCTTCACCAGCCAGTCTGAAGGTAAACCTGCCCACTGTTAAAGTTAGG Homonota_spb_MNHNP_11406 ATCTTTCACCAGTCAGTCTGAAGGTAAACCTGCCAGCTGTTAAAGTTAGG Homonota_spb_MNHNP_11409 ATCTTTCACCAGTCAGTCTGAAGGTAAACCTGCCAGCTGTTAAAGTTAGG Homonota_taragui_LJAMMCNP_14420 ATCCTTCACCAGCCAGTCTGAAGGTAAACCTGCCCGCTGTTAAAGTTAGG Homonota_underwoodi_LJAMMCNP_10923 ATCTTTCACCAGTCAGTCTGAAGGTAAACCTGCCCACTGTTAAAGTTAGG Homonota_underwoodi_LJAMMCNP_10931 ATCTTTCACCAGTCAGTCTGAAGGTAAACCTGCCCACTGTTAAAGTTAGG Homonota_uruguayensis_UFRGS_1568 ATCCTTCACCAGCCAGTCTGAAGGTAAACCTGCCCACTGTTAAAGTTAGG Homonota_whitii_LJAMMCNP_14387 ATCTTTCACCAGTCAGTCTGAAGGTAAACCTGCCAGCTGTCAAAGTTAGG Homonota_whitii_LJAMMCNP_14388 ATCTTTCACCAGTCAGTCTGAAGGTAAACCTGCCAGCTGTCAAAGTTAGG Homonota_williamsii_LJAMMCNP_6517 ATCTTTCGCCAGTCAGTCTGAAGGTAAACCTGCCAGCTGTCAAAGTTAGG Homonota_williamsii_LJAMMCNP_6518 ATCTTTCACCAGTCAGTCTGAAGGTAAACCTGCCAGCTGTCAAAGTTAGG Homonota_andicola_LJAMMCNP_12490 AAGGACTCGGATGTTCCGAATAACCCTGAAGCGGAGTCTGCGACGGAAGG Homonota_andicola_LJAMMCNP_12495 AAGGACTCGGATGTTCCGAATAACCCTGAAGCGGAGTCTGCGACGGAAGG Homonota_borellii_LJAMMCNP_12116 AAGGACTCGGATGTTCCGAATAACCCTGAAGYGGAGGCTGCAACAGAAGG Homonota_borellii_LJAMMCNP_12125 AAGGACTCGGATGTTCCGAATAACCCTGAAGTGGAGGCTGCAACAGAAGG Homonota_darwinii_LJAMMCNP_11424 AAGGACTCGGAYGTTCCGAATAACCCTGAAGCGGAGGCTGCGACAGAAGG Homonota_darwinii_LJAMMCNP_9266 AAGGACTCGGATGTTCCGAATAACCCTGAAGCGGAGGCTGCGACAGAAGG Homonota_spa_LJAMMCNP_10528 AAGGACTCGGATGTTCYGAATAACCCTGAAGCGGAGGCTGCGACAGAAGG Homonota_spa_LJAMMCNP_10577 AAGGACTCGGATGTTCCGAATAACCCTGAAGCGGAGGCTGCGACAGAAGG Homonota_rupicola_RUPI_2 AAGGACTCGGATGTTCCGAATAACCCTGAAGCGGAGGCTGCGACAGAAGG Homonota_spb_MNHNP_11406 AAGGACTCGGACGTTCCGAATAACCCTGAAGCGGAGGCTGCGACAGAAGG Homonota_spb_MNHNP_11409 AAGGACTCGGAYGTTCCGAATAACCCTGAAGCGGAGGCTGCGACAGAAGG Homonota_taragui_LJAMMCNP_14420 AAGGACTCGGATGTTCCGAATAACCCTGAAGCGGAGGCTGCAACAGAAGG Homonota_underwoodi_LJAMMCNP_10923 AAGGACTCGGATGTTCCGAATAACCCTGAAGCRGAGGCTGCGACAGAAGG Homonota_underwoodi_LJAMMCNP_10931 AAGGACTCGGATGTTCCGAATAACCCTGAAGTGGAGGCTGCGACAGAAGG Homonota_uruguayensis_UFRGS_1568 AAGGACTCGGATGTTCCGAATAACCCTGAAGCAGAGGCTGCAACAGAAGG Homonota_whitii_LJAMMCNP_14387 AAGGACTCGGATGTTCCGAATAACCCTGAAGCGGAGTCTGCGACGGAAGG Homonota_whitii_LJAMMCNP_14388 AAGGACTCSGATGTTCCGAATAATCCTGAAGCGGAGTCTGCRACGGAAGG Homonota_williamsii_LJAMMCNP_6517 AAGGACTCGGATGTTCCGAATAACCCTGAAGCGGAGGCTGCGACAGAAGG Homonota_williamsii_LJAMMCNP_6518 AAGGACTCGGATGTTCCGAATAACCCTGAAGCGGAGGCTGCGACAGAAGG Homonota_andicola_LJAMMCNP_12490 ACCCGATGCCAAGGAAGTGGTGGTTGTCAAAGAAGAGAGAAACAGAGAGG Homonota_andicola_LJAMMCNP_12495 ACCCGATGCCAAGGAAGTGGTGGTTGTCAAAGAAGAGAGAAACAGAGAGG Homonota_borellii_LJAMMCNP_12116 ACTCGATGCCAAGGAAGTGGTGGTTGTCAAAGAAGAGAGAAACAGAGAGG Homonota_borellii_LJAMMCNP_12125 ACTCGATGCCAAGGAAGTGGTGGTTGTCAAAGAAGAGAGAAACAGAGAGG Homonota_darwinii_LJAMMCNP_11424 ACCCGATGCCAAGGAAGTGGTGGTTGTCAAAGAAGAGAGAAACAGAGA?? Homonota_darwinii_LJAMMCNP_9266 ACCCGATGCCAAGGAAGTGGTGGTTGTCAAAGAAGAGAGAAACAGAGAGG Homonota_spa_LJAMMCNP_10528 ACCCGATGCCAAGGAAGTGGCGGTTGTCAAAGAAGAGAGAAACAGAGAGG Homonota_spa_LJAMMCNP_10577 ACCCGATGCCAAGGAAGTGGCGGTTGTCAAAGAAGAGAGAAACAGAGAGG Homonota_rupicola_RUPI_2 ACTCGATGCCAAGGAAGTGGTGGTTGTCAAAGAAGAGAGAAACAGAGAGG Homonota_spb_MNHNP_11406 ACCCGATGCCAAGGAAGTGGCGGTTGTCAAAGAAGAGAGAAACAGAGAGG Homonota_spb_MNHNP_11409 ACCCGATGCCAAGGAAGTGGCGGTTGTCAAAGAAGAGAGAAACAGAGAGG Homonota_taragui_LJAMMCNP_14420 ACTCGATGCCAAGGAAGTGGTGGTTGTCAAAGAAGAGAGAAACAGAGAGG Homonota_underwoodi_LJAMMCNP_10923 ACTCGATGCCAAGGAAGTGGCGGTTGTCAAAGAAGAGAGAAACAGAGAGG Homonota_underwoodi_LJAMMCNP_10931 ACTCGATGCCAAGGAAGTGGCGGTTGTCAAAGAAGAGAGAAACAGAGAGG Homonota_uruguayensis_UFRGS_1568 ACTCGATGCCAAGGAAGTGGTGGTTGTCAAAGAAGAGAGAAACAGAGAGG Homonota_whitii_LJAMMCNP_14387 ACCCGATGCCAAGGAAGTGGTGGTTGTCAAAGAAGAGAGAAACAGAGAGG Homonota_whitii_LJAMMCNP_14388 ACCCGATGCCAAGGAARTGGTGGTTGTCAAAGAARAGAGAAACAGAGAGG Homonota_williamsii_LJAMMCNP_6517 ACCCGATGCCAAGGAAGTGGTGGTTGTCAAAGAAGAGAGAAACAGAGAGG Homonota_williamsii_LJAMMCNP_6518 ACCCGATGCCAAGGAAGTGGTGGTTGTCAAAGAAGAGAGAAACAGAGAGG Homonota_andicola_LJAMMCNP_12490 GAGAGAAGCAGAGCCAGAGCCCCGCGGCAGTAACGGGCGCCGTGGACAGT Homonota_andicola_LJAMMCNP_12495 GAGAGAAGCAGAGCCAGAGCCCCGCGGCAGTAACGGGCGCCGTGGACAGT Homonota_borellii_LJAMMCNP_12116 GAGAGAAGCAGAGCCAGAGCCCCGCGGCAGTAACGGGCGTCGTGGACAGT Homonota_borellii_LJAMMCNP_12125 GAGAGAAGCAGAGCCAGAGCCCCGCGGCAGTAACGGGCGTCGTGGACAGT Homonota_darwinii_LJAMMCNP_11424 ?????????????????????????????????????????????????? Homonota_darwinii_LJAMMCNP_9266 GAGAGAAGCAGAGCCAGAGCCCCGTGGCAGTAACGGGCGTCGTGGACAGT Homonota_spa_LJAMMCNP_10528 GAGAGAAGCAGAGCCAGAGCCCCGCGGCAGTAACGGGCGTCGCGGACAGT Homonota_spa_LJAMMCNP_10577 GAGAGAAGCAGAGCCAGAGCCCCGCGGCAGTAACGGGCGTCGTGGACAGT Homonota_rupicola_RUPI_2 GAGAGAAGCAGAGCCAGAGCCCCGCGGCAGTAACGGGCGTCGTGGACAGT Homonota_spb_MNHNP_11406 GAGAGAAGCAGAGCCAGAGCCCCGCGGCAGTAACGGGYGTCGYGGACAGT Homonota_spb_MNHNP_11409 GAGAGAAGCAGAGCCAGAGYCCCGCGGCAGTAACGGGCGTCGCRGACAGT Homonota_taragui_LJAMMCNP_14420 GAGAGAAGCAGAGCCAGAGCCCCGCGGCAGTAACGGGCGTCGTGGACAGT Homonota_underwoodi_LJAMMCNP_10923 GAGAGAAGCAGAGCCAGAGCCCTGCGGCAGTAACGGGCGTCGTGGACAGT Homonota_underwoodi_LJAMMCNP_10931 GAGAGAAGCAGAGCCAGAGCCCTGCGGCAGTAACGGGCGTCGTGGACAGT Homonota_uruguayensis_UFRGS_1568 GAGAGAAGCAGAGCCAGAGCCCCGCGGCAGTAACGGGCGTCGTGGACAGT Homonota_whitii_LJAMMCNP_14387 GAGAGAAGCAGAGCCAGAGCCCCGCGGCAGTAACGGGCGCCGTGGACAGT Homonota_whitii_LJAMMCNP_14388 GAGAGAAGCAGAGCCAGAGCCCCGCGGCAGTAACGGGCGCCGTGGACAGT Homonota_williamsii_LJAMMCNP_6517 GAGAGAAGCAGAGCCAGAGCCCCGTGGCAGTAACGGGTGTCGTGGACAGT Homonota_williamsii_LJAMMCNP_6518 GAGAGAAGCAGAGCCAGAGCCCCGTGGCAGTAACGGGCGTCGTGGACAGT Homonota_andicola_LJAMMCNP_12490 GCGCTGAAAACAGAAGCGGCCGAAAATGCACAGGGCAGTGTGGTGGATAA Homonota_andicola_LJAMMCNP_12495 GCGCTGAAAACAGAAGCGGCCGAAAATGCACAGGGCAGTGTGGTGGATAA Homonota_borellii_LJAMMCNP_12116 GTGCTGAAAACAGAAGCAGCCGAAAATGCACAGGGCAGTGTGGTGGATAA Homonota_borellii_LJAMMCNP_12125 GTGCTGAAAACAGAAGCAGCCGAAAATGCACAGGGCAGTGTGGTGGATAA Homonota_darwinii_LJAMMCNP_11424 ?????????????????????????????????????????????????? Homonota_darwinii_LJAMMCNP_9266 GCGCTGAAAACAGAAGCGGCTGAAAATGCACAGGGCAGTGTGGTGGATAA Homonota_spa_LJAMMCNP_10528 GCGCTGAAAACAGAAGCAGCCGAAAATGCACAGGGCAGTGTGGTGGATAA Homonota_spa_LJAMMCNP_10577 GCGCTGAAAACAGAAGCAGCCGAAAATGCACAGGGCAGTGTGGTGGATAA Homonota_rupicola_RUPI_2 GTGCTGAAAACAGAAGCAGCCGAAAATGCACAGGGCAGTTTGGTGGATAA Homonota_spb_MNHNP_11406 GCGCTGAAAACAGAAGCAGCCGAAAATGCACAGGGCAGTGTGGTGGATAA Homonota_spb_MNHNP_11409 GCGCTGAAAACAGAAGCAGCCGAAAATGCACAGKGCAGTGTGGTGGATAA Homonota_taragui_LJAMMCNP_14420 GTGCTGAAAACAGAAGCAGCCGAAAATGCACAGGGCAGTGTGGTGGATAA Homonota_underwoodi_LJAMMCNP_10923 GCGCTGAAAACAGAAGCAGCCGAAAATGCACAGGGCAGTGTGGTGGATAA Homonota_underwoodi_LJAMMCNP_10931 GCGCTGAAAACAGAAGCAGCCGAAAATGCACAGGGCAGTGTGGTGGATAA Homonota_uruguayensis_UFRGS_1568 GTGCTGAAAACAGAAGCAGCCGAAAATGCACAGGGCAGTGTGGTGGATAA Homonota_whitii_LJAMMCNP_14387 GCGCTGAAAACAGAAGCGGCCGAAAATGCACAGGGCAGTGTGGTGGATAA Homonota_whitii_LJAMMCNP_14388 GCGCTGAAAACAGAAGCGGCCGAAAATGCACAGGGCAGTGTGGTGGATAA Homonota_williamsii_LJAMMCNP_6517 GCGCTGAAAACAGAAGCAGCCGAAAATGCACAGGGCAGTGTGGTGGATAA Homonota_williamsii_LJAMMCNP_6518 GCGCTGAAAACAGAAGCGGCTGAAAATGCACAGGGCAGTGTGGTGGATAA Homonota_andicola_LJAMMCNP_12490 TAAATGGAAGCCACTGCAGGGCGTAGGGAACCTACCGGCGACGGGTGCTG Homonota_andicola_LJAMMCNP_12495 TAAATGGAAGCCACTGCAGGGCGTAGGGAACCTACCGGCGACGGGTGCTG Homonota_borellii_LJAMMCNP_12116 TAAATGGAAGCCACTGCAGGGCATAGGGAACCTACCGGCGACGGTTGCTG Homonota_borellii_LJAMMCNP_12125 TAAATGGAAGCCACTGCAGGGCATAGGGAACCTACCGGCGACGGTTGCTG Homonota_darwinii_LJAMMCNP_11424 ?????????????????????????????????????????????????? Homonota_darwinii_LJAMMCNP_9266 TAAATGGAAGCCACTGCAGGGCGTAGGGAACCTACCGGCGACGGTTGCTG Homonota_spa_LJAMMCNP_10528 TAAATGGAAGCCACTGCAGGGCGTAGGGAACCTACTGGCGACGGTTGCTG Homonota_spa_LJAMMCNP_10577 TAAATGGAAGCCACTGCAGGGCGTAGGGAACCTACTGGCGACGGTTGCTG Homonota_rupicola_RUPI_2 TAAATGGAAGCCACTGCAGGGCATAGGGAACCTACCGGCAACGGTTGCTG Homonota_spb_MNHNP_11406 TAAATGGAAGCCACTGCAGGGCGTAGGGAACCTACTGGCGACGGTTGCTG Homonota_spb_MNHNP_11409 TAAATGGAAGCCACTGCAGGGCGTAGGGAACCTACTGGCGACGGTTGCTG Homonota_taragui_LJAMMCNP_14420 TAAATGGAAGCCACTGCAGGGCATAGGGAACCTACCGGCGACGGTTGCTA Homonota_underwoodi_LJAMMCNP_10923 TAAATGGAAGCCACTGCAGGGCGTAGGGAACCTACCGGCGACGGTTGCTG Homonota_underwoodi_LJAMMCNP_10931 TAAATGGAAGCCACTGCAGGGTGTAGGGAATCTACCGGCGACGGTTG??? Homonota_uruguayensis_UFRGS_1568 TAAATGGAAGCCACTGCAGGGCATAGGGAACCTACCGGCGACGGTTGCTG Homonota_whitii_LJAMMCNP_14387 TAAATGGAAGCCACTGCAGGGCGTAGGGAACCTTCCGGCGACGGGTGCTG Homonota_whitii_LJAMMCNP_14388 TAAATGGAAGCCACTGCAGGGCGTAGGGAACCTTCCGGCGACGGGTGCTG Homonota_williamsii_LJAMMCNP_6517 TAAATGGAAGCCACTGCAGGGCGTAGGGAACCTACYGGCGACGGTTGCTG Homonota_williamsii_LJAMMCNP_6518 TAAATGGAAGCCACTGCAGGGCGTAGGGAACCTACCGGCGACGGTTGCTG Homonota_andicola_LJAMMCNP_12490 TGGCCAATCCGGCAGAAGCCAAAAACGCAGCCTCCTCCTCGGATTCGAAG Homonota_andicola_LJAMMCNP_12495 TGGCCAATCCGGCAGAAGCCAAAAACGCAGCCTCCTCCTCGGATTCGAAG Homonota_borellii_LJAMMCNP_12116 TGGTCAATCCGGCAGAAGCCAAAAACGCAGCCTCCTCCTCGGAACTGAAG Homonota_borellii_LJAMMCNP_12125 TGGCCAATCCGGCAGAAGCCAAAAACGCAGCCTCCTCCTCGGAACTGAAG Homonota_darwinii_LJAMMCNP_11424 ?????????????????????????????????????????????????? Homonota_darwinii_LJAMMCNP_9266 TGGCCAATCTGGCAGAAGCCAAAAACGCAGCCTCCTCCTCGGAATTGAAG Homonota_spa_LJAMMCNP_10528 TTGCCAATCCGGCWGARGCC?????????????????????????????? Homonota_spa_LJAMMCNP_10577 TTGCCAATCCGGCTGARGCC?????????????????????????????? Homonota_rupicola_RUPI_2 TGGCCAGTCCGGCAGAAGCCAAAAACGCAGCCTCCTCCTCGGAATTGAAG Homonota_spb_MNHNP_11406 TKGCCAATCCGGCAGAAGCCAAAAACGCCGCCTCCTCCTCGGAATTGAAG Homonota_spb_MNHNP_11409 TKGCCAATCCGGCAGAAGCCAAAAACGCCGCCTCCTCCTCGGAATTGAAG Homonota_taragui_LJAMMCNP_14420 TGGCCAATCCGGCAGAAGCCAAAAACGCAGCCTCCTCCTCGGAACTGAAG Homonota_underwoodi_LJAMMCNP_10923 TGGCCAATCCGGCAGAAGCCAAAAACGCAGCCGCCTCCTCGGAATTGAAG Homonota_underwoodi_LJAMMCNP_10931 ?????????????????????????????????????????????????? Homonota_uruguayensis_UFRGS_1568 TGGCCAATCCGGCAGAAGCCAAAAACGCAGCCTCCTCCTCGGAATTGAAG Homonota_whitii_LJAMMCNP_14387 TGGCCAATCCGGCAGAAGCCAAAAACGCAGCCTCCTCCTCGGAATCGAAG Homonota_whitii_LJAMMCNP_14388 TGGCCAATCCGGCAGAAGCCAAAAACGCAGCCTCCTCCTCGGAATCGAAG Homonota_williamsii_LJAMMCNP_6517 TGGCCAATCCGGCAGAAGCCAAAAACGCAGCCTCCTCCTCGGAATTGAAG Homonota_williamsii_LJAMMCNP_6518 TGGCCAATCTGGCAGAAGCCAAAAACGCAGCCTCCTCCTCGGAATTGAAG Homonota_andicola_LJAMMCNP_12490 CCTCAGGGTTTAAGGATAGAAATC Homonota_andicola_LJAMMCNP_12495 CCTCAGGGTTTAAGGATAGAAATC Homonota_borellii_LJAMMCNP_12116 CCTCAGGGTTTAAGGATAGAAATC Homonota_borellii_LJAMMCNP_12125 CCTCAGGGTTTAAGGATAGAAATC Homonota_darwinii_LJAMMCNP_11424 ???????????????????????? Homonota_darwinii_LJAMMCNP_9266 CCTCAGGGTTTAAGGATAGAAATC Homonota_spa_LJAMMCNP_10528 ???????????????????????? Homonota_spa_LJAMMCNP_10577 ???????????????????????? Homonota_rupicola_RUPI_2 CCTCAGGGTTTAAGGATAGAAATC Homonota_spb_MNHNP_11406 CCTCAGGGTTTAAGGATAGAAATC Homonota_spb_MNHNP_11409 CCTCAGGGTTTAAGGATAGAAATC Homonota_taragui_LJAMMCNP_14420 CCTCAGGGTTTAAGGATAGAAATC Homonota_underwoodi_LJAMMCNP_10923 CCTCCGGGTTTAAGGATAGAAATC Homonota_underwoodi_LJAMMCNP_10931 ???????????????????????? Homonota_uruguayensis_UFRGS_1568 CCTCAGGGTTTAAGGATAGAAATC Homonota_whitii_LJAMMCNP_14387 CCTCAGGGTTTAAGGATAGAAATC Homonota_whitii_LJAMMCNP_14388 CCTCAGGGTTTAAGGATAGAAATC Homonota_williamsii_LJAMMCNP_6517 CCTCAGGGTTTAAGGATAGAAATC Homonota_williamsii_LJAMMCNP_6518 CCTCAGGGTTTAAGGATAGAAATC ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 1074; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 1074; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 1074; END; BEGIN TREES; Title NKTR_BI; ID 015b7b4e41df7; LINK Taxa = NKTR; TRANSLATE [0] 1 Homonota_andicola_LJAMMCNP_12490, [1] 2 Homonota_andicola_LJAMMCNP_12495, [2] 3 Homonota_borellii_LJAMMCNP_12116, [3] 4 Homonota_borellii_LJAMMCNP_12125, [4] 5 Homonota_darwinii_LJAMMCNP_11424, [5] 6 Homonota_darwinii_LJAMMCNP_9266, [6] 7 Homonota_spa_LJAMMCNP_10528, [7] 8 Homonota_spa_LJAMMCNP_10577, [8] 9 Homonota_rupicola_RUPI_2, [9] 10 Homonota_spb_MNHNP_11406, [10] 11 Homonota_spb_MNHNP_11409, [11] 12 Homonota_taragui_LJAMMCNP_14420, [12] 13 Homonota_underwoodi_LJAMMCNP_10923, [13] 14 Homonota_underwoodi_LJAMMCNP_10931, [14] 15 Homonota_uruguayensis_UFRGS_1568, [15] 16 Homonota_whitii_LJAMMCNP_14387, [16] 17 Homonota_whitii_LJAMMCNP_14388, [17] 18 Homonota_williamsii_LJAMMCNP_6517, [18] 19 Homonota_williamsii_LJAMMCNP_6518; TREE con_50_majrule = (((7:0.002021767,8:0.01067899):0.01764213,(10:0.004009044,11:0.00322667):0.01658124):0.01156318,((13:0.001682141,14:0.0117595):0.01708611,((9:0.01598586,15:0.00695269,(12:0.004880222,(3:0.003193887,4:0.00162201):0.008085137):0.005692337):0.0265538,(((1:0.001358725,2:0.001381196):0.004997669,(16:0.001349869,17:0.005838889):0.005857763):0.02062576,(18:0.009282096,(6:0.003726012,(5:0.005502477,19:0.00366959):0.004457175):0.006597797):0.02262018):0.01096584):0.01496848):0.01156318); END; BEGIN TREES; Title NKTR_ML; ID 015b7b882cbb31; LINK Taxa = NKTR; TRANSLATE [0] n0 Homonota_andicola_LJAMMCNP_12490, [1] n1 Homonota_andicola_LJAMMCNP_12495, [2] n2 Homonota_borellii_LJAMMCNP_12116, [3] n3 Homonota_borellii_LJAMMCNP_12125, [4] n4 Homonota_darwinii_LJAMMCNP_11424, [5] n5 Homonota_darwinii_LJAMMCNP_9266, [6] n6 Homonota_spa_LJAMMCNP_10528, [7] n7 Homonota_spa_LJAMMCNP_10577, [8] n8 Homonota_rupicola_RUPI_2, [9] n9 Homonota_spb_MNHNP_11406, [10] n10 Homonota_spb_MNHNP_11409, [11] n11 Homonota_taragui_LJAMMCNP_14420, [12] n12 Homonota_underwoodi_LJAMMCNP_10923, [13] n13 Homonota_underwoodi_LJAMMCNP_10931, [14] n14 Homonota_uruguayensis_UFRGS_1568, [15] n15 Homonota_whitii_LJAMMCNP_14387, [16] n16 Homonota_whitii_LJAMMCNP_14388, [17] n17 Homonota_williamsii_LJAMMCNP_6517, [18] n18 Homonota_williamsii_LJAMMCNP_6518; TREE tree_1 = ((((((n5:0.0010879753439577095,(n4:0.002086651983801053,n18:0.0011204534507817346):0.001609119084162767):0.0028711878500230483,n17:0.004280444406867001):0.011777309546188589,((n15:0.00000091504758423797,n16:0.0023434754601778683):0.0023509583114992567,(n0:0.00000091504758423797,n1:0.00000091504758423797):0.0019082952063193964):0.010642570534988766):0.004662116429334233,((n14:0.0028819097373690198,n8:0.008297281203934496):0.0008564901690242844,(n11:0.0018788112425096443,(n3:0.00000091504758423797,n2:0.0009305089939932173):0.0037429501109240027):0.0019592563526121924):0.014861687052184365):0.007358923514384972,(n13:0.005497211899486405,n12:0.00000091504758423797):0.009390452711887882):0.0058666238735735395,((n6:0.00000091504758423797,n7:0.005208796367490582):0.00926972367961087,(n10:0.000956996396969448,n9:0.0012139235999937398):0.008113977270729801):0.0058666238735735395); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1493022086363; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 772454572520054215; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 56166432106110422; mqVersion 320; checksumv 0 3 1449644292 null getNumChars 1074 numChars 1074 getNumTaxa 19 numTaxa 19 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 305787.0 sumSquares -9.684540638697511E19 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1092 824; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #772454572520054215 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #772454572520054215; getWindow; tell It; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 992 752; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.arrow; endTell; setActive; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #772454572520054215 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 015b7b4e41df7; toggleUseWeights off; endTell; setAssignedID 1541.1492422383918.2239562792996135255; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 992 752; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.reroot; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; makeTreeWindow #772454572520054215 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 2; setTreeBlockID 015b7b882cbb31; toggleUseWeights off; endTell; setAssignedID 3788.1492426176824.4750710252477245545; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 992 752; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.reroot; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #56166432106110422 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 992 752; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;