#NEXUS [written Mon Apr 24 10:16:14 CEST 2017 by Mesquite version 3.2 (build 801) at HG17209/172.30.18.79] BEGIN TAXA; TITLE Cytb; DIMENSIONS NTAX=28; TAXLABELS Homonota_andicola_LJAMMCNP_12493 Homonota_andicola_LJAMMCNP_12495 Homonota_borellii_LJAMMCNP_12116 Homonota_borellii_LJAMMCNP_12125 Homonota_darwinii_LJAMMCNP_11424 Homonota_darwinii_LJAMMCNP_9266 Homonota_spa_LJAMMCNP_10577 Homonota_spa_LJAMMCNP_5047 Garthia_gaudichaudi_IBEG1_1 Garthia_gaudichaudi_IBEG1_2 Gymnodactylus_geckoides_LG_1050 Gymnodactylus_geckoides_LG_911 Phyllodactylus_kofordi_TG_266 Phyllopezus_przewalskii_LJAMMCNP_12089 Phyllopezus_pollicaris_CHUNB_57388 Homonota_rupicola_RUPI_1 Homonota_rupicola_RUPI_2 Homonota_spb_MNHNP_11406 Homonota_spb_MNHNP_11409 Homonota_taragui_LJAMMCNP_14419 Homonota_taragui_LJAMMCNP_14420 Homonota_underwoodi_LJAMMCNP_10923 Homonota_underwoodi_LJAMMCNP_10931 Homonota_uruguayensis_UFRGS_1568 Homonota_whitii_LJAMMCNP_14387 Homonota_whitii_LJAMMCNP_14388 Homonota_williamsii_LJAMMCNP_4467 Homonota_williamsii_LJAMMCNP_6517 ; END; BEGIN CHARACTERS; TITLE Cytb_Matrix; DIMENSIONS NCHAR=793; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = ?; MATRIX Homonota_andicola_LJAMMCNP_12493 TTCGAAAAACCCACCCCGTAATTAAAATTATTAACAACTCACTCATTGAT Homonota_andicola_LJAMMCNP_12495 TTCGAAAAACCCACCCCGTAATTAAAATTATTAACAACTCACTCATTGAT Homonota_borellii_LJAMMCNP_12116 ?????????????????????????????????????????????????? Homonota_borellii_LJAMMCNP_12125 ?????????????????????????????????????????????????? Homonota_darwinii_LJAMMCNP_11424 TACGAAAAGCCCACCCAGTAATCAAGATTATTAACAACTCGCTAATCGAC Homonota_darwinii_LJAMMCNP_9266 TACGAAAAGCCCACCCAGTAATCAAGATTATTAACAACTCGCTAATCGAC Homonota_spa_LJAMMCNP_10577 TACGAAAAACTCACCCAACAATCAAACTCATTAATAACTCTCTAATTGAC Homonota_spa_LJAMMCNP_5047 TACGAAAAACTCACCCAACAATCAAACTCATTAATAACTCTCTAATTGAC Garthia_gaudichaudi_IBEG1_1 ?????????????????????????????????????????????????? Garthia_gaudichaudi_IBEG1_2 ?????????????????????????????????????????????????? Gymnodactylus_geckoides_LG_1050 TCCGAAAAACACATCCGACCATCAAATTAATTAACAACTCCCTAATTGAC Gymnodactylus_geckoides_LG_911 TCCGAAAAACACATCCGACCATCAAATTAATTAACAACTCCCTAATTGAC Phyllodactylus_kofordi_TG_266 ?????????????????????????????????????????????????? Phyllopezus_przewalskii_LJAMMCNP_12089 TACGCAAAACACACCCCGTATTAAAAATCATTAATAACTCACTTATCGAT Phyllopezus_pollicaris_CHUNB_57388 TACGTAAAACCCACCCAACATTAAAAATTATTAACAACTCGCTCATTGAT Homonota_rupicola_RUPI_1 TCCGGAAAACCCACCCAACCATTAAACTCGCCACCAACTCGCTAGTTGAT Homonota_rupicola_RUPI_2 TCCGGAAAACCCACCCAACCATTAAACTCGCCACCAACTCGCTAGTTGAT Homonota_spb_MNHNP_11406 ??????????????????????????????????????????TAATTGAC Homonota_spb_MNHNP_11409 TACGAAAAACCCACCCAGTAATCAAGCTCATCAATAACTCCCTAATTGAC Homonota_taragui_LJAMMCNP_14419 TCCGAAAAACCCACCCAGTCATTAAACTCATCAACAACTCACTAATTGAC Homonota_taragui_LJAMMCNP_14420 TCCGAAAAACCCACCCAGTCATTAAACTCATCAACAACTCACTAATTGAC Homonota_underwoodi_LJAMMCNP_10923 TACGAAAGACTCACCCAATTATAAAACTTATCAATAACTCTCTAATTGAC Homonota_underwoodi_LJAMMCNP_10931 TACGAAAGACTCACCCAATTATAAAACTTATCAATAACTCTCTAATTGAC Homonota_uruguayensis_UFRGS_1568 ?????????????????????????????????????????????????? Homonota_whitii_LJAMMCNP_14387 TTCGAAAAACCCACCCAGTAATTAAAATTATTAACAACTCACTCATTGAC Homonota_whitii_LJAMMCNP_14388 TTCGAAAAACCCACCCAGTAATTAAAATTATTAACAACTCACTCATTGAC Homonota_williamsii_LJAMMCNP_4467 TGCGAAAAACCCACCCAGTAATCAAGATCATTAACAACTCACTTATCGAC Homonota_williamsii_LJAMMCNP_6517 TGCGAAAAACCCACCCAGTAATCAAGATCATTAACAACTCACTTATCGAC Homonota_andicola_LJAMMCNP_12493 CTGCCAACACCATCAAACATCTCCGCCTGATGAAACTTTGGGTCCTTACT Homonota_andicola_LJAMMCNP_12495 CTGCCAACACCATCAAACATCTCCGCCTGATGAAACTTTGGGTCCTTACT Homonota_borellii_LJAMMCNP_12116 CTACCCACGCCATCAAACATCTCAGCCTGATGAAACTTCGGGTCCCTGCT Homonota_borellii_LJAMMCNP_12125 CTACCCACGCCATCAAACATCTCAGCCTGATGAAACTTCGGGTCCCTGCT Homonota_darwinii_LJAMMCNP_11424 CTGCCAACACCATCGAACATCTCCGCCTGATGGAACTTTGGATCGCTCCT Homonota_darwinii_LJAMMCNP_9266 CTGCCAACACCATCGAACATCTCCGCCTGATGGAACTTTGGATCGCTCCT Homonota_spa_LJAMMCNP_10577 CTCCCAACACCATCCAACATCTCAGCTTGATGAAACTTCGGCTCCCTACT Homonota_spa_LJAMMCNP_5047 CTCCCAACACCATCCAACATCCCAGCTTGATGAAACTTCGGCTCCCTACT Garthia_gaudichaudi_IBEG1_1 ?????????????????????????????????????TTGGCTCCCTACT Garthia_gaudichaudi_IBEG1_2 ????????????????????????????????????TTTGGCTCCCTACT Gymnodactylus_geckoides_LG_1050 CTGCCAACCCCTTCAAACATTTCTGCCTGGTGAAATTTTGGCTCACTATT Gymnodactylus_geckoides_LG_911 CTACCAACCCCTTCAAACATTTCTGCCTGGTGAAATTTTGGCTCACTATT Phyllodactylus_kofordi_TG_266 ??????????????????????????????????ACCTCGGCTCACTATT Phyllopezus_przewalskii_LJAMMCNP_12089 CTACCAACCCCTCCAAACATCTCTGCCTGATGAAACATAGGCTCATTACT Phyllopezus_pollicaris_CHUNB_57388 CTTCCAGCCCCTTCAAACATCTCTGCTTGATGGAACTTTGGCTCACTACT Homonota_rupicola_RUPI_1 CTACCCGCACCCTCAAACATTTCAGCCTGATGGAACTTTGGGTCCCTACT Homonota_rupicola_RUPI_2 CTACCCGCACCCTCAAACATTTCAGCCTGATGGAACTTTGGGTCCCTACT Homonota_spb_MNHNP_11406 CTCCCAACCCCATCCAATATCTCAACATGGTGAAACTTCGGCTCCCTACT Homonota_spb_MNHNP_11409 CTCCCAACCCCATCCAATATCTCAACATGGTGAAACTTCGGCTCCCTACT Homonota_taragui_LJAMMCNP_14419 CTACCTACGCCATCAAACATCTCGGCCTGATGAAACTTCGGGTCCCTGCT Homonota_taragui_LJAMMCNP_14420 CTACCTACGCCATCAAACATCTCGGCCTGATGAAACTTCGGGTCCCTGCT Homonota_underwoodi_LJAMMCNP_10923 CTTCCAACACCATCAAATATTTCGGCCTGATGGAACTTCGGATCCCTGCT Homonota_underwoodi_LJAMMCNP_10931 CTCCCAACACCATCAAATATTTCGGCCTGATGGAACTTCGGATCCCTGCT Homonota_uruguayensis_UFRGS_1568 ?????????????????????????????????????????????????? Homonota_whitii_LJAMMCNP_14387 CTACCTACGCCATCAAACATCTCCGCCTGATGAAACTTTGGATCCCTACT Homonota_whitii_LJAMMCNP_14388 CTACCTACGCCATCAAACATCTCCGCCTGATGAAACTTTGGATCCCTACT Homonota_williamsii_LJAMMCNP_4467 CTGCCAACACCATCAAACATCTCCGCCTGATGAAATTTTGGCTCACTCCT Homonota_williamsii_LJAMMCNP_6517 CTGCCAACACCATCAAACATCTCCGCCTGATGAAATTTTGGCTCACTCCT Homonota_andicola_LJAMMCNP_12493 TGGCCTCTGTCTAATATTACAAATCCTAACCGGCCTCTTTCTAGCCATAC Homonota_andicola_LJAMMCNP_12495 TGGCCTCTGTCTAATATTACAAATCCTAACCGGCCTCTTTCTAGCCATAC Homonota_borellii_LJAMMCNP_12116 AGGCCTATGCCTAATACTCCAAATCCTCACAGGCCTATTCCTAGCCATGC Homonota_borellii_LJAMMCNP_12125 AGGCCTATGCCTAATACTCCAAATCCTCACAGGCCTATTCCTAGCCATGC Homonota_darwinii_LJAMMCNP_11424 CGGACTCTGCCTAATACTACAAATCCTAACTGGCCTCTTCCTGGCCATGC Homonota_darwinii_LJAMMCNP_9266 CGGACTCTGCCTAATACTACAAATCCTAACTGGCCTCTTCCTGGCCATGC Homonota_spa_LJAMMCNP_10577 AGGCCTCTGCCTACTACTACAAATCCTAACAGGCTTATTCCTAGCCATAC Homonota_spa_LJAMMCNP_5047 AGGCCTCTGCCTACTACTACAAATCCTAACAGGCTTATTCCTAGCCATAC Garthia_gaudichaudi_IBEG1_1 AGGCCTATGCCTAATAACCCAAATCCTAACAGGCCTATTCCTGGCAATAC Garthia_gaudichaudi_IBEG1_2 AGGCCTATGCCTAATAACCCAAATCCTAACAGGCCTATTCCTGGCAATAC Gymnodactylus_geckoides_LG_1050 AGGACTCTGCCTAATAATTCAAATCTTAACTGGCCTCTTCCTAGCAATGC Gymnodactylus_geckoides_LG_911 AGGACTCTGCCTAATAATTCAAATCTTAACTGGCCTCTTCCTAGCAATGC Phyllodactylus_kofordi_TG_266 AGCTCTTTGCCTAGTAATACAAATAGCAACCGGCCTATTTCTAGCCATAC Phyllopezus_przewalskii_LJAMMCNP_12089 AGGCATCTGCCTAATAGTCCAAATTCTAACAGGCCTATTTTTAGCCATAC Phyllopezus_pollicaris_CHUNB_57388 GGGCATTTGCCTAATGATCCAAATCATAACAGGGCTATTCTTAGCAATGC Homonota_rupicola_RUPI_1 CGGCCTATGCCTACTACTTCAAATCCTCACAGGCCTCTTCCTGGCCATAC Homonota_rupicola_RUPI_2 CGGCCTATGCCTACTACTTCAAATCCTCACAGGCCTCTTCCTGGCCATAC Homonota_spb_MNHNP_11406 GGGCCTTTGTCTACTACTACAGATCCTAACGGGCCTATTCTTAGCCATAC Homonota_spb_MNHNP_11409 GGGCCTTTGTCTACTACTACAGATCCTAACGGGCCTATTCTTAGCCATAC Homonota_taragui_LJAMMCNP_14419 CGGCCTATGCCTCCTACTCCAAATCCTCACAGGCCTATTCCTAGCCATAC Homonota_taragui_LJAMMCNP_14420 CGGCCTATGCCTCCTACTCCAAATCCTCACAGGCCTATTCCTAGCCATAC Homonota_underwoodi_LJAMMCNP_10923 AGGCTTATGCCTACTTCTGCAAATTATTACAGGACTATTCTTGGCCATAC Homonota_underwoodi_LJAMMCNP_10931 AGGCTTATGCCTACTTCTGCAAATTATTACAGGACTATTCCTGGCCATAC Homonota_uruguayensis_UFRGS_1568 GGGGCTGTGCCTAGCACTCCAAATCCTCACAGGCCTATTCCTGGCCATAC Homonota_whitii_LJAMMCNP_14387 TGGTCTCTGCCTAGTACTACAAATCCTAACCGGCCTCTTCCTAGCCATAC Homonota_whitii_LJAMMCNP_14388 TGGTCTCTGCCTAGTACTACAAATCCTAACCGGCCTCTTCCTGGCCATAC Homonota_williamsii_LJAMMCNP_4467 CGGCCTCTGCCTGATACTACAAATCCTAACTGGCCTCTTCCTAGCCATAC Homonota_williamsii_LJAMMCNP_6517 CGGCCTCTGCCTGATACTACAGATCCTAACTGGCCTCTTCCTAGCCATAC Homonota_andicola_LJAMMCNP_12493 ACTACACTGCAAATACATCTGCCGCTTTCACCTCCCTAGCACACATTACC Homonota_andicola_LJAMMCNP_12495 ACTACACTGCAAATACATCTGCCGCTTTCACCTCCCTAGCACACATTACC Homonota_borellii_LJAMMCNP_12116 ACTACACGGCAAACACCTCACTCGCCTTCACCTCCCTAGCACACATCACC Homonota_borellii_LJAMMCNP_12125 ACTACACGGCAAACACCTCACTCGCCTTCACCTCCCTAGCACACATCACC Homonota_darwinii_LJAMMCNP_11424 ACTACACCGCAAACACATCCCTTGCCTTTGCTTCCCTGGCACACATCTCT Homonota_darwinii_LJAMMCNP_9266 ACTACACCGCAAACACATCCCTTGCCTTTGCTTCCCTGGCACACATCTCT Homonota_spa_LJAMMCNP_10577 ACTATACAGCAAACACATCTATAGCCTTTGCCTCACTAGCACACATTACC Homonota_spa_LJAMMCNP_5047 ACTATACAGCAAACACATCTATAGCCTTTGCCTCACTAGCACACATTACC Garthia_gaudichaudi_IBEG1_1 ACTACTCAGCTGACACCTCAATGGCCTTCTCCTCCATCGCTCACATCACC Garthia_gaudichaudi_IBEG1_2 ACTACTCAGCTGACACCTCAATGGCCTTCTCCTCCATCGCTCACATCACC Gymnodactylus_geckoides_LG_1050 ACTACACCGCAGATACCACCTTAGCCTTCACCTCCGTTGCACACCTTTGT Gymnodactylus_geckoides_LG_911 ACTACACCGCAGATACCACCTTAGCCTTCACCTCCGTTGCACACCTTTGT Phyllodactylus_kofordi_TG_266 ATTACTCAGCAAACACTGCCCTTGCCTTCGCCTCCATCGCTCACATCTGC Phyllopezus_przewalskii_LJAMMCNP_12089 ATTACACCGCAGACACATCACTCGCTTTTTCTTCTGTAGCCCATATCTGC Phyllopezus_pollicaris_CHUNB_57388 ATTATACCGCCGACACAACACTAGCCTTTTCATCTGTGGCCCACATCTGT Homonota_rupicola_RUPI_1 ACTACACAGCAAGCACCTCTTCCGCCTTCACCTCCCTAGCACACATCATC Homonota_rupicola_RUPI_2 ACTACACAGCAAGCACCTCTTCCGCCTTCACCTCCCTAGCACACATCATC Homonota_spb_MNHNP_11406 ACTACACAGCAAGTACGTCCACAGCCTTCGCCTCAGTAGCACACATCACC Homonota_spb_MNHNP_11409 ACTACACAGCAAGTACGTCCACAGCCTTCGCCTCAGTAGCACACATCACC Homonota_taragui_LJAMMCNP_14419 ACTACACAGCAAGCACCTCTTCCGCCTTCACCTCCCTAGCACACATTACC Homonota_taragui_LJAMMCNP_14420 ACTACACAGCAAGCACCTCTTCCGCCTTCACCTCCCTAGCACACATTGCC Homonota_underwoodi_LJAMMCNP_10923 ACTATACAGCAAATACATCTCTCGCTTTTGCCTCACTAGCACATATCACC Homonota_underwoodi_LJAMMCNP_10931 ACTATACAGCAAATACATCTCTCGCTTTTGCCTCACTAGCACATATCACC Homonota_uruguayensis_UFRGS_1568 ACTACACAGCAGACACGGCTCTGGCCTTCACCTCCCTAGCACATATTACC Homonota_whitii_LJAMMCNP_14387 ACTACACTGCAAATACATCCGCCGCCTTTACCTCCCTAGCACACATTACC Homonota_whitii_LJAMMCNP_14388 ACTACACTGCAAATACATCCGCCGCCTTTACCTCCCTAGCACACATTACC Homonota_williamsii_LJAMMCNP_4467 ACTACACCGCAAATACATCCCTTGCCTTTGCCTCGCTGGCACACATCTCC Homonota_williamsii_LJAMMCNP_6517 ACTACACCGCAAATACATCCCTTGCCTTTGCCTCGCTGGCACACATCTCC Homonota_andicola_LJAMMCNP_12493 CGCGATGTCCAGTATGGCTGACTTATCCAGGCCCTCCATGCCAACGGGGC Homonota_andicola_LJAMMCNP_12495 CGCGATGTCCAGTATGGCTGACTTATCCAGGCCCTCCATGCCAATGGGGC Homonota_borellii_LJAMMCNP_12116 CGCGACGTACAATACGGCTGACTGATCCAAACACTACATGCAAACGGGGC Homonota_borellii_LJAMMCNP_12125 CGCGACGTACAATACGGCTGACTGATCCAAACACTACATGCAAACGGGGC Homonota_darwinii_LJAMMCNP_11424 CGCGACGTACAATACGGATGACTTATCCAAGCCCTTCACGCCAACGGGGC Homonota_darwinii_LJAMMCNP_9266 CGCGACGTACAATACGGATGACTTATCCAAGCCCTTCACGCCAACGGGGC Homonota_spa_LJAMMCNP_10577 CGCGATGTAAAATACGGCTGACTTATTCAGGCACTTCACGCTAATGGCGC Homonota_spa_LJAMMCNP_5047 CGCGATGTAAAATACGGCTGACTTATTCAGGCACTTCACGCTAATGGCGC Garthia_gaudichaudi_IBEG1_1 CGCAACGTCCAACACGGATGACTTATCCGCGGCCTACACGCCAACGGAGC Garthia_gaudichaudi_IBEG1_2 CGCAACGTCCAACACGGATGACTTATCCGCGGCCTACACGCCAACGGAGC Gymnodactylus_geckoides_LG_1050 CGTGATGTAAAATATGGCTGACTCATCCGCAGCCTCCATGCTAATGGTGC Gymnodactylus_geckoides_LG_911 CGTGATGTAAAATATGGCTGACTCATCCGCAGCCTCCATGCTAATGGTGC Phyllodactylus_kofordi_TG_266 CGAGACGTTCAATATGGCTGACTTATCCAAGCACTACACGCCAACGGCGC Phyllopezus_przewalskii_LJAMMCNP_12089 CGCGATGTCAAATACGGATGACTAATTCGAAACCTACACGCCAACGGGGC Phyllopezus_pollicaris_CHUNB_57388 CGCGATGTAAAATATGGCTGACTTATTCGAAACCTACATGCCAACGGAGC Homonota_rupicola_RUPI_1 CGCGACGTACAGTACGGCTGACTAATCCAAGCACTTCATGCAAACGGGGC Homonota_rupicola_RUPI_2 CGCGACGTACAGTACGGCTGACTAATCCAAGCACTTCATGCAAACGGGGC Homonota_spb_MNHNP_11406 CGCGACGTGACATACGGCTGACTCATTCAAGCACTTCACGCTAACGGAGC Homonota_spb_MNHNP_11409 CGCGACGTGACATACGGCTGACTCATTCAAGCACTTCACGCTAACGGAGC Homonota_taragui_LJAMMCNP_14419 CGCGATGTGCAGTACGGCTGATTAATCCAAGCACTCCACGCAAACGGGGC Homonota_taragui_LJAMMCNP_14420 CGCGATGTGCAGTACGGCTGATTAATCCAAGCACTCCACGCAAACGGGGC Homonota_underwoodi_LJAMMCNP_10923 CGCGATGTGCAGTACGGATGACTAATTCAAGCACTTCACGCTAACGGGGC Homonota_underwoodi_LJAMMCNP_10931 CGCGATGTGCAGTACGGATGACTAATTCAAGCACTTCACGCTAACGGGGC Homonota_uruguayensis_UFRGS_1568 CGCGACGTACAGTATGGCTGACTAATCCAAGCCCTCCATGCAAACGGAGC Homonota_whitii_LJAMMCNP_14387 CGAGACGTCCAATATGGCTGACTTATCCAAGCCCTACACGCCAACGGGGC Homonota_whitii_LJAMMCNP_14388 CGAGACGTCCAATATGGCTGACTTATCCAAGCCCTACACGCCAACGGGGC Homonota_williamsii_LJAMMCNP_4467 CGCGATGTACAATATGGATGACTCATCCAGACCCTTCATGCCAACGGGGC Homonota_williamsii_LJAMMCNP_6517 CGCGATGTACAATATGGATGACTCATCCAGACCCTTCATGCCAACGGGGC Homonota_andicola_LJAMMCNP_12493 CTCACTATTCTTTATCTGCATCTACCTTCACATCGGACGGGGCCTATATT Homonota_andicola_LJAMMCNP_12495 CTCACTATTCTTTATCTGCATCTACCTTCACATCGGACGGGGCCTATATT Homonota_borellii_LJAMMCNP_12116 CTCCATATTCTTTATCTGCATCTACCTACACATCGGACGAGGCCTGTACT Homonota_borellii_LJAMMCNP_12125 CTCCATATTCTTTATCTGCATCTACCTACACATCGGACGAGGCCTGTACT Homonota_darwinii_LJAMMCNP_11424 CTCCCTATTCTTTATCTGTATCTACCTCCACATCGGACGAGGCCTATATT Homonota_darwinii_LJAMMCNP_9266 CTCCCTATTCTTTATCTGTATCTACCTCCACATCGGACGAGGCCTATATT Homonota_spa_LJAMMCNP_10577 CTCCTTATTTTTTATCTGCATCTACCTTCACATCGGACGAGGGTTATACT Homonota_spa_LJAMMCNP_5047 CTCCTTATTTTTTATCTGCATCTACCTTCACATCGGACGAGGGTTGTACT Garthia_gaudichaudi_IBEG1_1 CTCAATGTTCTTCATCTGCCTATACCTCCACATCGGCCGAGGACTATACT Garthia_gaudichaudi_IBEG1_2 CTCAATGTTCTTCATCTGCCTATACCTCCACATCGGCCGAGGACTATACT Gymnodactylus_geckoides_LG_1050 ATCCCTCATTTTCATCTGCCTCTACCTCCATGCAGGACGCGGACTCTATT Gymnodactylus_geckoides_LG_911 ATCCCTCATTTTCATCTGCCTCTACCTCCATGCAGGACGCGGACTCTATT Phyllodactylus_kofordi_TG_266 CTCATGCTTCTTCATCTGCATCTACCTTCACATCGGCCGTGGTCTATACT Phyllopezus_przewalskii_LJAMMCNP_12089 CTCAATATTCTTCATCTGCCTGTATCTCCACATTGGCCGAGGACTTTACT Phyllopezus_pollicaris_CHUNB_57388 CTCTATATTCTTCATCTGCCTATATCTTCACATCGGTCGAGGGTTATACT Homonota_rupicola_RUPI_1 CTCCATAGTCTTTATTTGCGCCTACCTCCACATCGGACGGGGCCTATACT Homonota_rupicola_RUPI_2 CTCCATAGTCTTTATTTGCGCCTACCTCCACATCGGACGGGGCCTATACT Homonota_spb_MNHNP_11406 CTCCCTATTTTTCATCTGTCTCTACCTTCATATCGGGCGGGGCCTATACT Homonota_spb_MNHNP_11409 CTCCCTATTTTTCATCTGTCTCTACCTTCATATCGGGCGGGGCCTATACT Homonota_taragui_LJAMMCNP_14419 CTCCATATTCTTTATCTGCATCTACCTCCACATCGGGCGAGGCTTATACT Homonota_taragui_LJAMMCNP_14420 CTCCATATTCTTTATCTGCATCTACCTCCACATCGGGCGAGGCTTATACT Homonota_underwoodi_LJAMMCNP_10923 CTCCCTATTTTTCATCTGCATCTACCTTCACATTGGCCGAGGTCTCTACT Homonota_underwoodi_LJAMMCNP_10931 CTCCCTATTTTTCATCTGCATCTACCTTCACATTGGCCGAGGTCTCTACT Homonota_uruguayensis_UFRGS_1568 CTCCATATTTTTTATTTGCATCTACCTCCACATCGGACGAGGCCTCTACT Homonota_whitii_LJAMMCNP_14387 CTCACTATTCTTTATCTGCATTTATCTCCACATCGGACGAGGCCTATATT Homonota_whitii_LJAMMCNP_14388 CTCACTATTCTTTATCTGCATCTATCTCCACATCGGACGGGGCCTATATT Homonota_williamsii_LJAMMCNP_4467 CTCCCTATTTTTCATCTGCATCTACCTCCACATCGGACGGGGCCTGTATT Homonota_williamsii_LJAMMCNP_6517 CTCCCTATTTTTCATCTGCATCTACCTCCACATCGGACGGGGCCTGTATT Homonota_andicola_LJAMMCNP_12493 ATGGCTCCTACCTCTACAAAGAAACTTGAAATATCGGAGTTCTCCTACTC Homonota_andicola_LJAMMCNP_12495 ATGGCTCCTACCTCTACAAAGAAACTTGAAATATCGGAGTTCTCCTACTC Homonota_borellii_LJAMMCNP_12116 ACGGATCATACCTCTTCAAAGAGACTTGGAACATTGGCGTCATCCTACTG Homonota_borellii_LJAMMCNP_12125 ACGGATCATACCTCTTCAAAGAGACTTGGAACATTGGCGTCATCCTACTG Homonota_darwinii_LJAMMCNP_11424 ACGGCTCCTACCTCTATAAAGAAACCTGAAACATCGGCGTTCTCCTCTTA Homonota_darwinii_LJAMMCNP_9266 ACGGCTCCTACCTCTATAAAGAAACCTGAAACATCGGCGTTCTCCTCTTA Homonota_spa_LJAMMCNP_10577 ATGGTTCCTATCTCTACAAAGAAACCTGAAACATCGGAGTTATTCTCCTA Homonota_spa_LJAMMCNP_5047 ATGGTTCCTATCTCTACAAAGAAACCTGAAACATCGGAGTTATTCTCCTA Garthia_gaudichaudi_IBEG1_1 ATGGCTCCTACCTATACAAAGAAACCTGGAACATTGGCGTCATCCTACTA Garthia_gaudichaudi_IBEG1_2 ATGGCTCCTACCTATACAAAGAAACCTGGAACATTGGCGTCATCCTACTA Gymnodactylus_geckoides_LG_1050 ACGGCTCATACCTTTACAAAGAAACCTGAAATATTGGAGTTACCCTCCTA Gymnodactylus_geckoides_LG_911 ACGGCTCATACCTTTACAAAGAAACCTGAAATATTGGAGTTACCCTCCTA Phyllodactylus_kofordi_TG_266 ACGGGTCCTACTTATATAAAGAGACCTGAAACACGGGCGTTGCCCTACTA Phyllopezus_przewalskii_LJAMMCNP_12089 ACGGCTCCTATCTCTACAAAGAAACTTGAAACATCGGCGTTTTCCTTATA Phyllopezus_pollicaris_CHUNB_57388 ATGGCTCCTACTTATATAAAGAAACATGAAACATCGGAGTAATCCTTTTG Homonota_rupicola_RUPI_1 ACGGATCATACCTATTCAAAGAAACCTGAAACATCGGCGTTATCCTACTC Homonota_rupicola_RUPI_2 ACGGATCATACCTATTCAAAGAAACCTGAAACATCGGCGTTATCCTACTC Homonota_spb_MNHNP_11406 ACGGTTCCTATCTCTACAAAGAGACCTGAAATGTCGGAGTTATTCTCCTA Homonota_spb_MNHNP_11409 ACGGTTCCTATCTCTACAAAGAGACCTGAAATGTCGGAGTTATTCTCCTA Homonota_taragui_LJAMMCNP_14419 ACGGGTCGTACCTGTTCAAAGAGACCTGGAACATCGGCGTTATCCTGCTC Homonota_taragui_LJAMMCNP_14420 ACGGGTCGTACCTGTTCAAAGAGACCTGGAACATCGGCGTTATCCTGCTC Homonota_underwoodi_LJAMMCNP_10923 ATGGATCCTACCTTTATAAAGAAACCTGAAACATTGGCGTAATATTACTG Homonota_underwoodi_LJAMMCNP_10931 ATGGATCCTACCTTTATAAAGAAACCTGAAACATTGGCGTAATATTACTG Homonota_uruguayensis_UFRGS_1568 ACGGATCCTACCTATTCAAAGAAACTTGAAACATTGGCGTTATCCTACTA Homonota_whitii_LJAMMCNP_14387 ATGGCTCCTATCTTTACAAAGAAACCTGAAATATCGGAGTCCTCCTACTC Homonota_whitii_LJAMMCNP_14388 ATGGCTCCTATCTTTACAAAGAAACCTGAAATATCGGAGTCCTCCTACTC Homonota_williamsii_LJAMMCNP_4467 ACGGCTCCTACCTTTACAAAGAAACCTGAAATATCGGCGTTCTCCTCTTA Homonota_williamsii_LJAMMCNP_6517 ACGGCTCCTACCTTTACAAAGAAACCTGAAATATCGGCGTTCTCCTCCTA Homonota_andicola_LJAMMCNP_12493 TTCCTAGTAATAGCCACAGCCTTTGTAGGATACGTACTGCCCTGAGGCCA Homonota_andicola_LJAMMCNP_12495 TTCCTAGTAATAGCCACAGCCTTTGTAGGATACGTACTGCCCTGAGGCCA Homonota_borellii_LJAMMCNP_12116 TTTCTAGTAATAGCCACGGCCTTCGTGGGTTATGTACTGCCCTGAGGGCA Homonota_borellii_LJAMMCNP_12125 TTTCTAGTAATAGCCACGGCCTTCGTGGGTTATGTACTGCCCTGAGGGCA Homonota_darwinii_LJAMMCNP_11424 TTCCTTGTAATAGCCACCGCCTTCGTAGGATACGTATTACCCTGAGGACA Homonota_darwinii_LJAMMCNP_9266 TTCCTTGTAATAGCCACCGCCTTCGTAGGATACGTATTACCCTGAGGACA Homonota_spa_LJAMMCNP_10577 TTCCTAGTTATAGCCACAGCTTTCGTAGGGTATGTCCTACCATGAGGACA Homonota_spa_LJAMMCNP_5047 TTCCTAGTTATAGCCACAGCTTTCGTAGGGTATGTCCTACCATGAGGACA Garthia_gaudichaudi_IBEG1_1 TTCCTTGTAATAGCTACAGCCTTCGTAGGCTACGTACTGCCA-------- Garthia_gaudichaudi_IBEG1_2 TTCCTTGTAATAGCTACAGCCTTCGTAGGCTACGTACTGCCA-------- Gymnodactylus_geckoides_LG_1050 TTCCTAATAATAGCAACCGCCTTTGTAGGCTACGTCCTGCCCTGAGGACA Gymnodactylus_geckoides_LG_911 TTCCTAATAATAACAACCGCCTTTGTAGGCTACGTCCTGCCCTGAGGACA Phyllodactylus_kofordi_TG_266 TTTTTACTCATGGCCACCGCTTTCGTAGGCTATGTTCTCCCATGAGGACA Phyllopezus_przewalskii_LJAMMCNP_12089 TTCATCACAATGGCCACTGCTTTTGTTGGATACGTCCTGCCATGAGGACA Phyllopezus_pollicaris_CHUNB_57388 TTCCTCACAATAGCCACTGCTTTCGTAGGCTATGTGTTACCATGAGGACA Homonota_rupicola_RUPI_1 TTCCTAGTAATAGCCACAGCCTTCGTAGGCTATGTCCTGCCCTGAGGACA Homonota_rupicola_RUPI_2 TTCCTAGTAATAGCCACAGCCTTCGTAGGCTATGTCCTGCCCTGAGGACA Homonota_spb_MNHNP_11406 TTCCTAGTTATAGCCACCGCTTTCGTGGGGTACGTCCTACCATGAGGACA Homonota_spb_MNHNP_11409 TTCCTAGTTATAGCCACCGCTTTCGTGGGGTACGTCCTACCATGAGGACA Homonota_taragui_LJAMMCNP_14419 TTTCTAGTAATAGCTACAGCCTTCGTGGGCTATGTCCTGCCCTGAGGACA Homonota_taragui_LJAMMCNP_14420 TTTCTAGTAATAGCTACAGCCTTCGTGGGCTATGTCCTGCCCTGAGGACA Homonota_underwoodi_LJAMMCNP_10923 TTCCTAGTAATAGCCACAGCATTTGTGGGCTATGTCCTGCCATGAGGACA Homonota_underwoodi_LJAMMCNP_10931 TTCCTAGTAATAGCCACAGCATTTGTGGGCTATGTCCTGCCATGAGGACA Homonota_uruguayensis_UFRGS_1568 TTTCTAGTAATAGCCACAGCCTTCGTAGGATACGTACTGCCTTGAGGACA Homonota_whitii_LJAMMCNP_14387 TTCCTAGTAATGGCCACCGCCTTCGTAGGATATGTACTACCCTGAGGCCA Homonota_whitii_LJAMMCNP_14388 TTCCTAGTAATGGCCACCGCCTTCGTAGGATATGTACTACCCTGAGGCCA Homonota_williamsii_LJAMMCNP_4467 TTCCTTGTAATAGCTACAGCCTTCGTAGGCTACGTATTACCCTGAGGACA Homonota_williamsii_LJAMMCNP_6517 TTCCTTGTAATAGCTACAGCCTTCGTAGGCTACGTATTACCCTGAGGACA Homonota_andicola_LJAMMCNP_12493 AATATCCTTCTGAGGGGCAACCGTAATCACTAATCTACTATCTGCAATCC Homonota_andicola_LJAMMCNP_12495 AATATCCTTCTGAGGGGCAACCGTAATCACTAATCTACTATCTGCAATCC Homonota_borellii_LJAMMCNP_12116 GATATCATTCTGGGGGGCAACAGTGATCACCAACCTCCTATCTGCAATCC Homonota_borellii_LJAMMCNP_12125 GATATCATTCTGGGGGGCAACAGTGATCACCAACCTCCTATCTGCAATCC Homonota_darwinii_LJAMMCNP_11424 GATATCCTTCTGAGGGGCAACCGTAATTACCAACTTACTATCTGCAGTCC Homonota_darwinii_LJAMMCNP_9266 GATATCCTTCTGAGGGGCAACTGTAATTACCAACTTACTATCTGCAGTCC Homonota_spa_LJAMMCNP_10577 AATATCATTCTGAGGGGCAACAGTAATCACCAACCTCCTCTCAGCAGTCC Homonota_spa_LJAMMCNP_5047 AATATCATTCTGAGGGGCAACAGTAATCACCAACCTCCTCTCAGCAGTCC Garthia_gaudichaudi_IBEG1_1 -------------------------------------------------- Garthia_gaudichaudi_IBEG1_2 -------------------------------------------------- Gymnodactylus_geckoides_LG_1050 AATATCCTTCTGAGGCGCCACCGTCATCACAAACCTACTATCAGCCATCC Gymnodactylus_geckoides_LG_911 AATATCCTTCTGAGGCGCCACCGTCATCACAAACCTACTATCAGCCATCC Phyllodactylus_kofordi_TG_266 AA???????????????????????????????????????????????? Phyllopezus_przewalskii_LJAMMCNP_12089 AATATCATTTTGAGGTGCCACAGTAATTACAAACCTTCTATCTGCCGTAC Phyllopezus_pollicaris_CHUNB_57388 AATATCATTCTGAGGGGCAACAGTAATTACAAACCTATTATCTGCTGTAC Homonota_rupicola_RUPI_1 GATATCCTTCTGAGGCGCAACAGTCATCACCAACCTCCTATCTGCAATCC Homonota_rupicola_RUPI_2 GATATCCTTCTGAGGCGCAACAGTCATCACCAACCTCCTATCTGCAATCC Homonota_spb_MNHNP_11406 AATATCATTCTGAGGGGCAACAGTGATCACCAACCTTCTCTCAGCAATCC Homonota_spb_MNHNP_11409 AATATCATTCTGAGGGGCAACAGTGATCACCAACCTTCTCTCAGCAATCC Homonota_taragui_LJAMMCNP_14419 GATATCATTCTGAGGGGCAACAGTTATCACTAATCTCCTATCTGCAATCC Homonota_taragui_LJAMMCNP_14420 GATATCATTCTGAGGGGCAACAGTTATCACTAATCTCCTATCTGCAATCC Homonota_underwoodi_LJAMMCNP_10923 AATATCATTTTGAGGGGCAACAGTAATTACTAATCTTCTCTCAGCAATCC Homonota_underwoodi_LJAMMCNP_10931 AATATCATTTTGAGGGGCAACAGTAATTACTAATCTTCTCTCAGCAATCC Homonota_uruguayensis_UFRGS_1568 GATATCATTCTGAGGGGCAACCGTAATTACCAACCTCCTATCTGCAATCC Homonota_whitii_LJAMMCNP_14387 AATATCTTTCTGAGGGGCAACTGTAATCACCAACCTACTATCTGCAATCC Homonota_whitii_LJAMMCNP_14388 AATATCTTTCTGAGGGGCAACTGTAATCACCAACCTACTATCTGCAATCC Homonota_williamsii_LJAMMCNP_4467 GATATCCTTCTGAGGGGCAACCGTAATCACCAACTTACTATCTGCAATCC Homonota_williamsii_LJAMMCNP_6517 GATATCCTTCTGAGGGGCAACCGTAATCACCAACTTACTATCTGCAATCC Homonota_andicola_LJAMMCNP_12493 CATACATTGGCCAAAACTTAGTCCAATGACTTTGAGGCGGCTATTCAGTA Homonota_andicola_LJAMMCNP_12495 CGTACATTGGCCAAAACTTAGTCCAATGACTTTGAGGCGGCTATTCAGTA Homonota_borellii_LJAMMCNP_12116 CCTACATTGGCCCAAACCTTGTACAGTGAATTTGAGGGGGCTACTCAGTA Homonota_borellii_LJAMMCNP_12125 CCTACATTGGCCCAAACCTTGTACAGTGAATTTGAGGGGGCTACTCAGTA Homonota_darwinii_LJAMMCNP_11424 CGTACATTGGCCAAAACCTTGTCCAATGACTCTGAGGTGGATACTCAGTA Homonota_darwinii_LJAMMCNP_9266 CGTACATTGGCCAAAACCTTGTCCAATGACTCTGAGGTGGATACTCAGTA Homonota_spa_LJAMMCNP_10577 CGTACATCGGCCCCAATTTAGTACAATGAATCTGAGGGGGCTTCTCAGTA Homonota_spa_LJAMMCNP_5047 CGTACATCGGCCCCAATTTAGTACAATGAATCTGAGGGGGCTTCTCAGTA Garthia_gaudichaudi_IBEG1_1 -------------------------------------------------- Garthia_gaudichaudi_IBEG1_2 -------------------------------------------------- Gymnodactylus_geckoides_LG_1050 CGTACCTAGGGCCTACCCTCGTAGAATGAGTCTGAGGGGGCTTTTCAGTA Gymnodactylus_geckoides_LG_911 CGTACCTAGGGCCTACCCTCGTAGAATGGATCTGAGGGGGCTTTTCAGTA Phyllodactylus_kofordi_TG_266 ?????????????????????????????????????????????????? Phyllopezus_przewalskii_LJAMMCNP_12089 CATACATCGGATTAAACCTTGTTACCTGAATCTGGGGCGGATTTTCCGTA Phyllopezus_pollicaris_CHUNB_57388 CATACCTCGGCCCAGACCTTGTAGCATGAATCTGAGGCAGCTTTTCCGTA Homonota_rupicola_RUPI_1 CGCACATTGGCCCAAACCTCGTACAGTGAATTTGAGGGGGCTACTCAGTA Homonota_rupicola_RUPI_2 CGCACATTGGCCCAAACCTCGTACAGTGAATTTGAGGGGGCTACTCAGTA Homonota_spb_MNHNP_11406 CATACATTGGCCCCAGCCTGGTACAGTGAGTGTGAGGAGGCTTCTCAGTA Homonota_spb_MNHNP_11409 CACACATTGGCCCCAGCCTGGTACAGTGAGTGTGAGGAGGCTTCTCAGTA Homonota_taragui_LJAMMCNP_14419 CGTACATTGGCCCCGACCTCGTACAGTGAATTTGAGGGGGCTACTCAGTA Homonota_taragui_LJAMMCNP_14420 CGTACATTGGCCCCGACCTCGTACAGTGAATTTGAGGGGGCTACTCAGTA Homonota_underwoodi_LJAMMCNP_10923 CGTACATCGGCCCCAACCTAGTACAATGAATCTGAGGCGGATTTTCAGTA Homonota_underwoodi_LJAMMCNP_10931 CGTACATCGGCCCCAACCTAGTACAATGAATCTGAGGCGGATTTTCAGTA Homonota_uruguayensis_UFRGS_1568 CCTACATTGGCCTGGACCTCGTACAATGAATCTGGGGGGGCTACTCAGTA Homonota_whitii_LJAMMCNP_14387 CGTACATTGGCCAAGACCTAGTCCAATGACTCTGAGGCGGCTACTCAGTA Homonota_whitii_LJAMMCNP_14388 CGTACATTGGCCAAGACCTAGTCCAATGACTCTGAGGCGGCTACTCAGTA Homonota_williamsii_LJAMMCNP_4467 CATATATTGGCCCAAACCTCGTCCAATGACTCTGGGGCGGGTACTCTGTA Homonota_williamsii_LJAMMCNP_6517 CATATATTGGCCCAAACCTCGTCCAATGACTCTGGGGCGGGTACTCTGTA Homonota_andicola_LJAMMCNP_12493 GACAACGCCACCCTCACACGCTTTTTCACATTCCACTTCCTACTTCCATT Homonota_andicola_LJAMMCNP_12495 GACAACGCCACCCTCACACGCTTTTTCACATTCCACTTCCTACTTCCATT Homonota_borellii_LJAMMCNP_12116 GACAACGCTACCCTCACCCGCTTTTTCGCATTTCACTTCTTACTCCCCTT Homonota_borellii_LJAMMCNP_12125 GACAACGCTACCCTCACCCGCTTTTTCGCATTTCACTTCTTACTCCCCTT Homonota_darwinii_LJAMMCNP_11424 GACAATGCCACCCTCACACGCTTTTTCACATTCCACTTCCTACTCCCATT Homonota_darwinii_LJAMMCNP_9266 GACAATGCCACCCTCACACGCTTTTTCACATTCCACTTCCTACTCCCATT Homonota_spa_LJAMMCNP_10577 GATAATGCCACTCTAACGCGTTTCTTTACATTTCACTTTCTACTTCCATT Homonota_spa_LJAMMCNP_5047 GATAATGCCACTCTAACGCGTTTCTTTACATTTCACTTTCTACTTCCATT Garthia_gaudichaudi_IBEG1_1 -------------------------------------------------- Garthia_gaudichaudi_IBEG1_2 -------------------------------------------------- Gymnodactylus_geckoides_LG_1050 GATAACGCAACTTTAACACGATTCTTCACATTTCACTTCTTACTGCCCTT Gymnodactylus_geckoides_LG_911 GATAACGCAACTTTAACGCGATTCTTCACATTTCACTTCTTACTGCCCTT Phyllodactylus_kofordi_TG_266 ?????????????????????????????????????????????????? Phyllopezus_przewalskii_LJAMMCNP_12089 GACAACGCCACCCTAACACGATTCTTCACATTCCATTTTTTACTCCCATT Phyllopezus_pollicaris_CHUNB_57388 GATAATGCAACCCTAACACGCTTTTTCACCTTCCACTTCCTACTTCCTTT Homonota_rupicola_RUPI_1 GATAGCGCCACCCTCACCCGCTTTTTCACATTTCACTTCCTTCTCCCCTT Homonota_rupicola_RUPI_2 GATAGCGCCACCCTCACCCGCTTTTTCACATTTCACTTCCTTCTCCCCTT Homonota_spb_MNHNP_11406 GACAACGCCACCCTCACCCGTTTCTTCACATTCCACTTCCTACTACCATT Homonota_spb_MNHNP_11409 GACAACGCCACCCTCACCCGTTTCTTCACATTCCACTTCCTACTACCATT Homonota_taragui_LJAMMCNP_14419 GATAGCGCCACCCTCACTCGCTTCTTCACATTTCACTTCCTACTCCCCTT Homonota_taragui_LJAMMCNP_14420 GATAGCGCCACCCTCACTCGCTTCTTCACATTTCACTTCCTACTCCCCTT Homonota_underwoodi_LJAMMCNP_10923 GACAACGCCACCCTTACCCGCTTCTTTACATTCCACTTTCTATTACCCTT Homonota_underwoodi_LJAMMCNP_10931 GACAACGCCACCCTTACCCGCTTCTTTACATTCCACTTTCTGTTACCCTT Homonota_uruguayensis_UFRGS_1568 GATAACGCCACCCTTACCCGATTCTTCGCATTCCACTTCCTACTCCCGTT Homonota_whitii_LJAMMCNP_14387 GACAACGCCACCCTTACACGCTTTTTTACATTCCACTTCCTACTTCCATT Homonota_whitii_LJAMMCNP_14388 GACAACGCCACCCTTACACGCTTTTTTACATTCCACTTCCTACTTCCATT Homonota_williamsii_LJAMMCNP_4467 GATAATGCCACCCTCACACGCTTCTTCACATTCCACTTCCTACTCCCGTT Homonota_williamsii_LJAMMCNP_6517 GATAATGCCACCCTCACACGCTTCTTCACATTCCACTTCCTACTCCCGTT Homonota_andicola_LJAMMCNP_12493 TATAATCTTAGCAATAATATTATTACACTTATTATTCCTCCACGAAACCG Homonota_andicola_LJAMMCNP_12495 TATAATCTTAGCAATAATATTATTACACTTATTATTCCTCCACGAAACCG Homonota_borellii_LJAMMCNP_12116 CCTAATTATAGCAATAATACTACTCCACCTCCTCTTCCTCCACGAAACCG Homonota_borellii_LJAMMCNP_12125 CCTAATTATAGCAATAATACTACTCCACCTCCTCTTCCTCCACGAAACCG Homonota_darwinii_LJAMMCNP_11424 CCTAATCATAGCAATAATACTACTACACCTTCTGTTCCTCCACGAAACAG Homonota_darwinii_LJAMMCNP_9266 CCTAATCATAGCAATAATACTACTACACCTTCTGTTCCTCCACGAAACAG Homonota_spa_LJAMMCNP_10577 TATAATCCTAGCAATAATATTACTCCATCTCCTATTCCTTCATGAAACCG Homonota_spa_LJAMMCNP_5047 TATAATCCTAGCAATAATATTACTCCATCTCCTATTCCTTCATGAAACCG Garthia_gaudichaudi_IBEG1_1 -------------------------------------------------- Garthia_gaudichaudi_IBEG1_2 -------------------------------------------------- Gymnodactylus_geckoides_LG_1050 CATTATTTTAGCACTCATGCTCCTCCACCTCCTATTCCTACACGAGACAG Gymnodactylus_geckoides_LG_911 CATTATTTTAGCACTCATGCTTCTCCACCTCCTGTTCCTACACGAGACAG Phyllodactylus_kofordi_TG_266 ?????????????????????????????????????????????????? Phyllopezus_przewalskii_LJAMMCNP_12089 CCTACTACTAGCCATAATACTACTACACCTCCTGTTTCTACACGAAACAG Phyllopezus_pollicaris_CHUNB_57388 CCTACTATTAGCAACAATACTACTACACCTACTGTTCTTACATGATACTG Homonota_rupicola_RUPI_1 CCTGATCTTAGCAATGATACTACTTCACCTACTATCCCTCCATGAAACCG Homonota_rupicola_RUPI_2 CCTGATCTTAGCAATGATACTACTTCACCTACTATCCCTCCATGAAACCG Homonota_spb_MNHNP_11406 CACAATCCTCGCAGCAATACTACTTCACCTCCTATTCCTTCACGAAACCG Homonota_spb_MNHNP_11409 CACAATCCTCGCAGCAATACTACTTCACCTCCTATTCCTTCACGAAACCG Homonota_taragui_LJAMMCNP_14419 CCTAATTTTAGCAATAATACTACTCCACCTACTATTCCTCCATGAAACCG Homonota_taragui_LJAMMCNP_14420 CCTAATTTTAGCAATAATACTACTCCACCTACTATTCCTCCATGAAACCG Homonota_underwoodi_LJAMMCNP_10923 CCTAATCCTCGCAATAATATTACTTCACCTTCTATTTCTTCACGAAACTG Homonota_underwoodi_LJAMMCNP_10931 CCTAATCCTCGCAATAATATTACTTCACCTTCTATTTCTTCACGAAACTG Homonota_uruguayensis_UFRGS_1568 CCTTATCCTAGCAACAATGATACTACACCTCCTATTCCTCCATGAAACCG Homonota_whitii_LJAMMCNP_14387 TATAATCTTAGCAATAATACTATTACACTTGTTATTCCTCCACGAAACTG Homonota_whitii_LJAMMCNP_14388 TATAATCTTAGCAATAATATTATTACACTTGTTATTCCTCCACGAAACTG Homonota_williamsii_LJAMMCNP_4467 CCTAATTATAGCAATAATACTGCTACACCTCCTCTTCCTCCACGAAACAG Homonota_williamsii_LJAMMCNP_6517 CCTAATTATAGCAATAATACTGCTACACCTCCTATTCCTCCACGAAACAG Homonota_andicola_LJAMMCNP_12493 GCTCAAACAACCCGACAGGCCTAAACGCCCAAAGTGATAAAGTACCGTTC Homonota_andicola_LJAMMCNP_12495 GCTCAAACAACCCGACAGGCCTAAACGCCCAAAGTGATAAAGTACCGTTC Homonota_borellii_LJAMMCNP_12116 GGTCTAACAATCCAACAGGCCTCAACTCCCACGTCGACAAAATCCCATTC Homonota_borellii_LJAMMCNP_12125 GGTCTAACAATCCAACAGGCCTCAACTCCCACGTCGACAAAATCCCATTC Homonota_darwinii_LJAMMCNP_11424 GGTCAAACAACCCAACCGGCCTCAGCTCACAAAGCGACAAAGTGCCATTC Homonota_darwinii_LJAMMCNP_9266 GATCAAACAACCCAACCGGCCTCAGCTCACAAAGCGACAAAGTGCCATTC Homonota_spa_LJAMMCNP_10577 GCTCTAACAACCCAACAGGCCTAAGCTCAAACACCGATAAAATCCCATTT Homonota_spa_LJAMMCNP_5047 GCTCTAACAACCCAACAGGCCTAAGCTCAAACACCGATAAAATCCCATTT Garthia_gaudichaudi_IBEG1_1 -------------------------------------------------- Garthia_gaudichaudi_IBEG1_2 -------------------------------------------------- Gymnodactylus_geckoides_LG_1050 GTTCAGGAAACCCCACAGGCCTGAACTCAAACTGTGATAAAATCCCATTC Gymnodactylus_geckoides_LG_911 GTTCAGGAAACCCCACAGGCCTGAACTCAAACTGTGATAAAATCCCATTC Phyllodactylus_kofordi_TG_266 ?????????????????????????????????????????????????? Phyllopezus_przewalskii_LJAMMCNP_12089 GCTCCAACAACCCAGTTGGGGTTAACTCAAACAGCGATAAAATTTCATTT Phyllopezus_pollicaris_CHUNB_57388 GCTCAAACAACCCCACCGGAATTAACTCCAACACCGATAAAATTCCGTTT Homonota_rupicola_RUPI_1 GATCAAACAACCCAACAGGCCTCAGTTCCCACACGGACAAAATCCCATTC Homonota_rupicola_RUPI_2 GATCAAACAACCCAACAGGCCTCAGTTCCCACACGGACAAAATCCCATTC Homonota_spb_MNHNP_11406 GCTCAAACAATCCAACAGGCCTAAACTCAAGCACCGACAAAGTCCCATTT Homonota_spb_MNHNP_11409 GCTCAAACAATCCAACAGGCCTAAACTCAAGCACCGACAAAGTCCCATTT Homonota_taragui_LJAMMCNP_14419 GATCAAACAACCCAACAGGCCTCAACTCCCACACGGATAAAATTCCATTC Homonota_taragui_LJAMMCNP_14420 GATCAAACAACCCAACAGGCCTCAACTCCCACACGGATAAAATTCCATTC Homonota_underwoodi_LJAMMCNP_10923 GGTCAAACAACCCAACAGGACTTAACTCACATACTGATAAAATCCCCTTC Homonota_underwoodi_LJAMMCNP_10931 GGTCAAACAACCCAACAGGACTTAACTCACATACTGATAAAATCCCCTTC Homonota_uruguayensis_UFRGS_1568 GATCAAACAATCCAACAGGCCTTAACTCCCACAGCGACAAAATCCCATTC Homonota_whitii_LJAMMCNP_14387 GCTCAAACAACCCAACAGGCCTTAGCTCCCAAAGTGACAAGGTACCATTC Homonota_whitii_LJAMMCNP_14388 GCTCAAACAACCCAACAGGCCTTAGCTCCCAAAGTGACAAGGTACCATTC Homonota_williamsii_LJAMMCNP_4467 GGTCAAACAACCCCATCGGCCTCAACTCACAAAGCGACAAAGTGCCATTC Homonota_williamsii_LJAMMCNP_6517 GGTCAAACAACCCCATCGGCCTCAACTCACAAAGCGACAAAGTGCCATTC Homonota_andicola_LJAMMCNP_12493 CACCCATACTACTCAACGAAAGATCTTCTTGGGGCTACAATAATAACTGC Homonota_andicola_LJAMMCNP_12495 CACCCATACTACTCAACGAAAGATCTTCTTGGGGCTACAATAATAACTGC Homonota_borellii_LJAMMCNP_12116 CACCCATACTACTCCACAAAAGACCTGCTTGGGGTAGTACTAATAATCAC Homonota_borellii_LJAMMCNP_12125 CACCCATACTACTCCACAAAAGACCTGCTTGGGGTAGTACTAATAATCAC Homonota_darwinii_LJAMMCNP_11424 CACCCGTACTACTCCACAAAAGACCTTCTAGGGGCTGCAATAATGGCCAC Homonota_darwinii_LJAMMCNP_9266 CACCCGTACTACTCCACAAAAGACCTTCTAGGGGCTGCAATAATGGCCAC Homonota_spa_LJAMMCNP_10577 CACCCCTACTATTCCGCTAAAGACATTCTGGGGGCCACACTAGTAATATC Homonota_spa_LJAMMCNP_5047 CACCCCTACTATTCCGCTAAAGACATTCTGGGGGCCACACTAATAATATC Garthia_gaudichaudi_IBEG1_1 -------------------------------------------------- Garthia_gaudichaudi_IBEG1_2 -------------------------------------------------- Gymnodactylus_geckoides_LG_1050 CACCCCTACTTTTCATACAAAGACCTCCTAGGAGCAACAATTATATTAAC Gymnodactylus_geckoides_LG_911 CACCCCTACTTTTCATACAAAGACCTCCTAGGAGCAACAATTATATTAAC Phyllodactylus_kofordi_TG_266 ?????????????????????????????????????????????????? Phyllopezus_przewalskii_LJAMMCNP_12089 CACCCGTACTATACCTACAAAGATCTACTTGGAGCCGCCCTACTTATCAC Phyllopezus_pollicaris_CHUNB_57388 CACCCATACTATTCCTACAAAGACCTGCTTGGAATCACACTCCTAATTAC Homonota_rupicola_RUPI_1 CACCCGTACTTCTCCATAAAAGACATGCTCGGAGCCACACTTCTAATCAT Homonota_rupicola_RUPI_2 CACCCGTACTTCTCCATAAAAGACATGCTCGGAGCCACACTTCTAATCAT Homonota_spb_MNHNP_11406 CACCCCTACTACTCCACCAAGGACATCCTAGGGGCCTTGCTAATAATATC Homonota_spb_MNHNP_11409 CACCCCTACTACTCCACCAAGGACATCCTAGGGGCCTTGCTAATAATATC Homonota_taragui_LJAMMCNP_14419 CACCCATACTACTCCACAAAAGACCTGCTTGGAGCCACACTGCTAACCAC Homonota_taragui_LJAMMCNP_14420 CACCCATACTACTCCACAAAAGACCTGCTTGGAGCCACACTGCTAACCAC Homonota_underwoodi_LJAMMCNP_10923 CACCCATATTACACCATCAAAGACCTACTAGGGGCCACACTTATAATGGC Homonota_underwoodi_LJAMMCNP_10931 CACCCATATTACACCATCAAAGACCTACTAGGGGCCACACTTATAATGGC Homonota_uruguayensis_UFRGS_1568 CACCCATACTACTCCACAAAAGACCTTCTTGGGGCAGCACTAATAACCAC Homonota_whitii_LJAMMCNP_14387 CACCCGTACTACTCCACAAAAGACCTTCTTGGAGCCACAATAATAGCCGC Homonota_whitii_LJAMMCNP_14388 CACCCGTACTACTCCACAAAAGACCTTCTTGGGGCCACAATAATAGCCGC Homonota_williamsii_LJAMMCNP_4467 CACCCGTACTACTCTATAAAAGATCTCCTAGGAGCTACGATAATGGCCAC Homonota_williamsii_LJAMMCNP_6517 CACCCGTACTACTCTATAAAAGATCTCCTAGGAGCTACGATAATGGCCAC Homonota_andicola_LJAMMCNP_12493 CGGTCTCCTATTTCTAGCCCTATTTTCCCCATACCTGCTAGGCGACCCAG Homonota_andicola_LJAMMCNP_12495 CGGTCTCCTATTTCTAGCCCTATTTTCCCCATACCTGCTAGGCGACCCAG Homonota_borellii_LJAMMCNP_12116 AGCCCTCCTATACCTAACCCTATTTTCCCCCTACCTACTAGGTGACCCCG Homonota_borellii_LJAMMCNP_12125 AGCCCTCCTATACCTAACCCTATTTTCCCCCTACCTACTAGGTGACCCCG Homonota_darwinii_LJAMMCNP_11424 AGTCCTACTATACTTAACTCTTTTCACCCCGTACCTGCTTGGCGACCCAG Homonota_darwinii_LJAMMCNP_9266 AGTCCTACTATACTTAACTCTTTTCACCCCGTACCTGCTTGGCGACCCAG Homonota_spa_LJAMMCNP_10577 CGCCCTTCTTTTTCTAGCCCTTTTCTCCCCCTACCTACTCGGCGAACCCG Homonota_spa_LJAMMCNP_5047 CGCCCTTCTTTTTCTAGCCCTTTTCTCCCCCTACCTACTCGGCGAACCCG Garthia_gaudichaudi_IBEG1_1 -------------------------------------------------- Garthia_gaudichaudi_IBEG1_2 -------------------------------------------------- Gymnodactylus_geckoides_LG_1050 TCTCTTACTTCAACTAAGCCTCTTCACACCACAACTCCTAGGAGACCCAG Gymnodactylus_geckoides_LG_911 TCTCTTACTTCAACTAAGCCTCTTCACACCACAACTCCTAGGAGACCCAG Phyllodactylus_kofordi_TG_266 ?????????????????????????????????????????????????? Phyllopezus_przewalskii_LJAMMCNP_12089 AGTCCTATTATGCCTAACACTTTTCTCACCACATCTACTAGGAGACCCTG Phyllopezus_pollicaris_CHUNB_57388 AGCCCTCTTATACCTGGCCCTATTCACGCCAAACCTGTTGGGCGATCCAG Homonota_rupicola_RUPI_1 AACCCTCCTATACCTGACCCTATTCTCCCCCCACCTACTAGGTGACCCCG Homonota_rupicola_RUPI_2 AACCCTCTTATACCTGACCCTATTCTCCCCCCACCTACTAGGTGACCCCG Homonota_spb_MNHNP_11406 TGCTCTTCTCTCCCTTACCCTTTTCTCCCCCTACCTACTTGGCGAACCCG Homonota_spb_MNHNP_11409 CGCTCTTCTCTCCCTTACCCTTTTCTCCCCCTACCTACTTGGCGAACCCG Homonota_taragui_LJAMMCNP_14419 AGCCCTCTTGTACCTAGCCCTATTCTCCCCCTACCTACTAGGCGATCCTG Homonota_taragui_LJAMMCNP_14420 AGCCCTCTTGTACCTAGCCCTATTCTCCCCCTACCTACTAGGCGATCCTG Homonota_underwoodi_LJAMMCNP_10923 CATACTACTATACCTAGCCCTATTCTCCCCCTATCTACTGGGAGACCCAG Homonota_underwoodi_LJAMMCNP_10931 CATACTACTATACTTAGCCCTATTTTCCCCCTATCTACTGGGAGACCCAG Homonota_uruguayensis_UFRGS_1568 AGCCCTCTTATACCTAGCCCTGTTCTCCCCCTACCTGCTAGGCGACCCCG Homonota_whitii_LJAMMCNP_14387 CGCCCTCTTATTTTTAGCCCTGTTTTCCCCGTATCTGCTAGGCGACCCGG Homonota_whitii_LJAMMCNP_14388 CGCCCTCTTATTTTTAGCCCTGTTTTCCCCGTATCTGCTAGGCGACCCGG Homonota_williamsii_LJAMMCNP_4467 TGCCCTACTATACCTAACGCTTTTCACCCCATACTTACTTGGTGACCCAG Homonota_williamsii_LJAMMCNP_6517 TGCCCTACTATACCTAACGCTTTTCACCCCATACTTACTTGGTGACCCAG Homonota_andicola_LJAMMCNP_12493 AAAACTTTTCTCCTGCAAATCCACTAATAACCCCACCCCATAT Homonota_andicola_LJAMMCNP_12495 AAAACTTTTCTCCTGCAAATCCACTAATAACCCCACCCCATAT Homonota_borellii_LJAMMCNP_12116 AAAACTTTACCCCTGCAAACCCACTCATAACCCCCCCGCACAT Homonota_borellii_LJAMMCNP_12125 AAAACTTTACCCCTGCAAACCCACTCATAACCCCCCCGCACAT Homonota_darwinii_LJAMMCNP_11424 AAAACTTCACCCCCGCAAACCCCCTAATAACACCCCCACACAT Homonota_darwinii_LJAMMCNP_9266 AAAACTTCACCCCCGCAAACCCCCTAATAACACCCCCACACAT Homonota_spa_LJAMMCNP_10577 AAAACT????????????????????????????????????? Homonota_spa_LJAMMCNP_5047 AAAACTTTACCCCCGCAAACCCACTAATAACTCCCCCCCACAT Garthia_gaudichaudi_IBEG1_1 ------------------------------------------- Garthia_gaudichaudi_IBEG1_2 ------------------------------------------- Gymnodactylus_geckoides_LG_1050 AAAACTTCACTCCCGCAAATCCACTTATTACACCACCC????? Gymnodactylus_geckoides_LG_911 AAAACTTCACTCCCGCAAATCCACTTATTACACCACCC????? Phyllodactylus_kofordi_TG_266 ??????????????????????????????????????????? Phyllopezus_przewalskii_LJAMMCNP_12089 AAAACTTCACCCCGGCAAACCCACTAACTACTCCGCCACATAT Phyllopezus_pollicaris_CHUNB_57388 AAAATTTCACCCCAGCAAACCCACTATCGACTCCACCGCATAT Homonota_rupicola_RUPI_1 AAAACTTCACCCCAGCAAACCCACTCACAACCCCCCCGCA??? Homonota_rupicola_RUPI_2 AAAACTTCACCCCAGCAAACCCACTCACAACCCCCCCGCACAT Homonota_spb_MNHNP_11406 AAAATTTTACCCCCGCAAACCCACTAATAACCCCACCCCACAT Homonota_spb_MNHNP_11409 AAAATTTTACCCCCGCACACCCACTAATAACCCCACCCCACAT Homonota_taragui_LJAMMCNP_14419 AAAACTTCACCCCAGCAAACCCACTTTTAACCCCCCCCCACAT Homonota_taragui_LJAMMCNP_14420 AGAACTTCACCCCAGCAAACCCACTTTTAACCCCCCCCCACAT Homonota_underwoodi_LJAMMCNP_10923 AAAACTTCACCCCCGCAAATCCACTAATAACCCCGCCCCACAT Homonota_underwoodi_LJAMMCNP_10931 AAAACTTCACTCCCGCAAATCCACTAATAACCCCGCCCCACAT Homonota_uruguayensis_UFRGS_1568 AAAACTTTACCCCCGCAAACCCACTCGTAACCCCCCCCCACAT Homonota_whitii_LJAMMCNP_14387 AAAACTTCTCCCCCGCAAACCCACTAATAACGCCACCCCACAT Homonota_whitii_LJAMMCNP_14388 AAAACTTCTCCCCCGCAAACCCACTAATAACGCCGCCCCACAT Homonota_williamsii_LJAMMCNP_4467 AAAACTTCACCCCCGCAAACCCTCTAATAACCCCCCCACACAT Homonota_williamsii_LJAMMCNP_6517 AAAACTTCACCCCCGCAAACCCTCTAATAACCCCCCCACACAT ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 793; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 793; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 793; END; BEGIN TREES; Title Cytb_BI; ID 015b7b411b8c1; LINK Taxa = Cytb; TRANSLATE [0] 1 Homonota_andicola_LJAMMCNP_12493, [1] 2 Homonota_andicola_LJAMMCNP_12495, [2] 3 Homonota_borellii_LJAMMCNP_12116, [3] 4 Homonota_borellii_LJAMMCNP_12125, [4] 5 Homonota_darwinii_LJAMMCNP_11424, [5] 6 Homonota_darwinii_LJAMMCNP_9266, [6] 7 Homonota_spa_LJAMMCNP_10577, [7] 8 Homonota_spa_LJAMMCNP_5047, [8] 9 Garthia_gaudichaudi_IBEG1_1, [9] 10 Garthia_gaudichaudi_IBEG1_2, [10] 11 Gymnodactylus_geckoides_LG_1050, [11] 12 Gymnodactylus_geckoides_LG_911, [12] 13 Phyllodactylus_kofordi_TG_266, [13] 14 Phyllopezus_przewalskii_LJAMMCNP_12089, [14] 15 Phyllopezus_pollicaris_CHUNB_57388, [15] 16 Homonota_rupicola_RUPI_1, [16] 17 Homonota_rupicola_RUPI_2, [17] 18 Homonota_spb_MNHNP_11406, [18] 19 Homonota_spb_MNHNP_11409, [19] 20 Homonota_taragui_LJAMMCNP_14419, [20] 21 Homonota_taragui_LJAMMCNP_14420, [21] 22 Homonota_underwoodi_LJAMMCNP_10923, [22] 23 Homonota_underwoodi_LJAMMCNP_10931, [23] 24 Homonota_uruguayensis_UFRGS_1568, [24] 25 Homonota_whitii_LJAMMCNP_14387, [25] 26 Homonota_whitii_LJAMMCNP_14388, [26] 27 Homonota_williamsii_LJAMMCNP_4467, [27] 28 Homonota_williamsii_LJAMMCNP_6517; TREE con_50_majrule = ((((22:0.004007918,23:0.007499867):0.2293707,((7:0.00243203,8:0.004977764):0.07698083,(18:0.001897414,19:0.005702129):0.1849231):0.1224815):0.09750656,(13:0.497897,((9:0.003022986,10:0.003176938):0.2079832,(11:0.003657374,12:0.009833018):0.6183293,(14:0.2813377,15:0.2021711):0.1845102):0.1446458):0.1299444):0.020313905,((24:0.09655586,((3:0.001221325,4:0.001219435):0.09045655,((16:0.002439761,17:0.00148435):0.1342705,(20:0.001349523,21:0.004116808):0.05089529):0.06816182):0.05151111):0.08492732,(((1:0.00285819,2:0.002629395):0.1046126,(25:0.009560585,26:0.002222616):0.04524187):0.1049803,((5:0.001659231,6:0.003663188):0.03967529,(27:0.003156234,28:0.003954733):0.112557):0.1280271):0.113887):0.020313905); END; BEGIN TREES; Title Cytb_ML; ID 015b7b8048ed25; LINK Taxa = Cytb; TRANSLATE [0] n0 Homonota_andicola_LJAMMCNP_12493, [1] n1 Homonota_andicola_LJAMMCNP_12495, [2] n2 Homonota_borellii_LJAMMCNP_12116, [3] n3 Homonota_borellii_LJAMMCNP_12125, [4] n4 Homonota_darwinii_LJAMMCNP_11424, [5] n5 Homonota_darwinii_LJAMMCNP_9266, [6] n6 Homonota_spa_LJAMMCNP_10577, [7] n7 Homonota_spa_LJAMMCNP_5047, [8] n8 Garthia_gaudichaudi_IBEG1_1, [9] n9 Garthia_gaudichaudi_IBEG1_2, [10] n10 Gymnodactylus_geckoides_LG_1050, [11] n11 Gymnodactylus_geckoides_LG_911, [12] n12 Phyllodactylus_kofordi_TG_266, [13] n13 Phyllopezus_przewalskii_LJAMMCNP_12089, [14] n14 Phyllopezus_pollicaris_CHUNB_57388, [15] n15 Homonota_rupicola_RUPI_1, [16] n16 Homonota_rupicola_RUPI_2, [17] n17 Homonota_spb_MNHNP_11406, [18] n18 Homonota_spb_MNHNP_11409, [19] n19 Homonota_taragui_LJAMMCNP_14419, [20] n20 Homonota_taragui_LJAMMCNP_14420, [21] n21 Homonota_underwoodi_LJAMMCNP_10923, [22] n22 Homonota_underwoodi_LJAMMCNP_10931, [23] n23 Homonota_uruguayensis_UFRGS_1568, [24] n24 Homonota_whitii_LJAMMCNP_14387, [25] n25 Homonota_whitii_LJAMMCNP_14388, [26] n26 Homonota_williamsii_LJAMMCNP_4467, [27] n27 Homonota_williamsii_LJAMMCNP_6517; TREE tree_1 = ((((((((n25:0.0004935410255632499,n24:0.006705900347080657):0.03759152566698463,(n1:0.0012226491877336417,n0:0.0011546105161013497):0.06866736037322274):0.0647396272680024,((n4:0.00000272779834069282,n5:0.002384262570017679):0.029936519475623233,(n26:0.0013411088727451586,n27:0.0022584708171246655):0.07519261672626569):0.07719395352577818):0.06216939151115669,(n23:0.06944744898349636,((n2:0.00000272779834069282,n3:0.00000272779834069282):0.06614833011681628,((n19:0.00000272779834069282,n20:0.0023796313885589867):0.04158691312485188,(n15:0.0012004864724577474,n16:0.00000272779834069282):0.08704934192081583):0.03696907489140646):0.029267520992541582):0.04485950461129151):0.01532299825714786,((n22:0.007090112811370364,n21:0.00009877926264485417):0.15386751979101174,((n7:0.0030067624012567237,n6:0.0007255686974058746):0.05538325233475514,(n18:0.0037894195570844853,n17:0.00000272779834069282):0.12186004768145765):0.06746748329875685):0.057795450901162955):0.029489714578582557,n12:0.39682005251579455):0.07810277661519129,(n9:0.00000272779834069282,n8:0.00000272779834069282):0.1178809029466778):0.020997960008736886,((n11:0.008502428738494949,n10:0.00000272779834069282):0.4192170083953402,(n14:0.1386379377148391,n13:0.1865421572357114):0.11136006389050006):0.020997960008736886); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1493021774136; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 7907023027637901240; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 3234801136476387811; mqVersion 320; checksumv 0 3 3509364201 null getNumChars 793 numChars 793 getNumTaxa 28 numTaxa 28 short true bits 15 states 15 sumSquaresStatesOnly 413858.0 sumSquares 413858.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1138 790; setLocation 28 86; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #7907023027637901240 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #7907023027637901240; getWindow; tell It; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1038 718; setLocation 28 86; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.arrow; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #7907023027637901240 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 015b7b411b8c1; toggleUseWeights off; endTell; setAssignedID 979.1492421520556.472191796316134886; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1038 718; setLocation 28 86; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.reroot; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; makeTreeWindow #7907023027637901240 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 2; setTreeBlockID 015b7b8048ed25; toggleUseWeights off; endTell; setAssignedID 3227.1492425661551.5407911421203923738; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1038 718; setLocation 28 86; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #3234801136476387811 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1038 718; setLocation 28 86; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;