#NEXUS [written Mon Apr 24 10:23:55 CEST 2017 by Mesquite version 3.2 (build 801) at HG17209/172.30.18.79] BEGIN TAXA; TITLE PRLR; DIMENSIONS NTAX=26; TAXLABELS Homonota_andicola_LJAMMCNP_12490 Homonota_andicola_LJAMMCNP_12495 Homonota_borellii_LJAMMCNP_12116 Homonota_borellii_LJAMMCNP_12125 Homonota_darwinii_LJAMMCNP_10638 Homonota_darwinii_LJAMMCNP_9813 Homonota_spa_LJAMMCNP_12415 Homonota_spa_LJAMMCNP_5047 Garthia_gaudichaudi_IBEG1_1 Gymnodactylus_geckoides_LG_1050 Gymnodactylus_geckoides_LG_911 Phyllopezus_przewalskii_LJAMMCNP_12089 Phyllopezus_pollicaris_CHUNB_57388 Phyllodactylus_kofordi_TG_266 Homonota_rupicola_RUPI_1 Homonota_rupicola_RUPI_2 Homonota_spb_MNHNP_11406 Homonota_spb_MNHNP_11409 Homonota_taragui_LJAMMCNP_14419 Homonota_taragui_LJAMMCNP_14420 Homonota_underwoodi_LJAMMCNP_10923 Homonota_underwoodi_LJAMMCNP_10931 Homonota_uruguayensis_UFRGS_1568 Homonota_uruguayensis_UFRGS_2139 Homonota_williamsii_LJAMMCNP_4467 Homonota_williamsii_LJAMMCNP_6517 ; END; BEGIN CHARACTERS; TITLE PRLR_Matrix; DIMENSIONS NCHAR=546; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = ?; MATRIX Homonota_andicola_LJAMMCNP_12490 ATGCCGAGTAACGAGAAGAGTCATCCCAGTAATGACGCCAAGTTAGTACA Homonota_andicola_LJAMMCNP_12495 ATGCCGAGTAACGAGAAGAGTCATCCCAGTAATGACGCCAAGTTAGTACA Homonota_borellii_LJAMMCNP_12116 ATGCCAAGTAACGAGAAGAGTCATCCCAGTAACAACGCAAAGTTAGTACA Homonota_borellii_LJAMMCNP_12125 ???????????????????????????????????????AAGTTAGTACA Homonota_darwinii_LJAMMCNP_10638 ??????????????????????????CAGTAACGACGCCAAGTTAGTACA Homonota_darwinii_LJAMMCNP_9813 ATGCCGAGTAACGAGAAGAGCCATCCCAGTAACGACGCCAAGTTAGTACA Homonota_spa_LJAMMCNP_12415 ATGCCAAGTAACGAGAAGAGTCATCCCAGTAACAACGCAAAGTTAGCACA Homonota_spa_LJAMMCNP_5047 ATGCCAAGTAACGAGAAGAGTCATCCCAGTAACAACGCAAAGTTAGTACA Garthia_gaudichaudi_IBEG1_1 ATGCCAAGTAACGAGAAGACTTATCCCAACAAAAATGCAAAGGTAGTGCT Gymnodactylus_geckoides_LG_1050 ATGCCGAGTAACGAGAAGAGTCATCCCAATAAAAATGCAAAGATAGTTCA Gymnodactylus_geckoides_LG_911 ATGCCGAGTAACGAGAAGAGTCATCCCAATAAAAATGCAAAGATAGTTCA Phyllopezus_przewalskii_LJAMMCNP_12089 ATGCCAAGTAACGAGAAGAGTCATCCTATTAAAAATGCAAAGATAGTACA Phyllopezus_pollicaris_CHUNB_57388 ATGCCAAGTAATGAGAAGAGTCATCCTATTAAAAATGCAAAGATGGTACA Phyllodactylus_kofordi_TG_266 ATGCCAAGTAACGAGAAGAGTCATCCCAGCAAAAATGCAAAGTTAGTACA Homonota_rupicola_RUPI_1 ATGCCAAGTAACGAGAAGAGTCATCCCAGTAACAACGCAAAGTTAGTACA Homonota_rupicola_RUPI_2 ATGCCAAGTAACGAGAAGAGTCATCCCAGTAACAACGCAAAGTTAGTACA Homonota_spb_MNHNP_11406 ATGCCAAGTAACGAGAAGAGTCATCCCAGTAACAACGCAAAGTTAGTACA Homonota_spb_MNHNP_11409 ATGCCAAGTAACGAGAAGAGTCATCCCAGTAACAACGCAAAGTTAGTACA Homonota_taragui_LJAMMCNP_14419 ATGCCAAGTAACGAGAAGAGTCATCCCAGTAACAACGCAAAGTTAGTACA Homonota_taragui_LJAMMCNP_14420 ATGCCAAGTAACGAGAAGAGTCATCCCAGTAACAACGCAAAGTTAGTACA Homonota_underwoodi_LJAMMCNP_10923 ATGCCAAGTAACGAGAAGAGTCATCCCAGTAACAACGCAAAGTTAGTACA Homonota_underwoodi_LJAMMCNP_10931 ??????????????????????????CAGTAACAACGCAAAGTTAGTACA Homonota_uruguayensis_UFRGS_1568 ATGCCAAGTAACGAGAAGAGTCATCCCAGTAACAACGCAAAGTTAGTWCA Homonota_uruguayensis_UFRGS_2139 ???????????????????????????????????CGCAAAGTTAGTTCA Homonota_williamsii_LJAMMCNP_4467 ATGCCGAGTAACGAGAAGAGTCATCYCAGTAACGACGCCAAGTTAGTACA Homonota_williamsii_LJAMMCNP_6517 ATGCCGAGTAACGAGAAGAGTCATCTCAGTAACGACGCCAAGTTAGTACA Homonota_andicola_LJAMMCNP_12490 CAAGGAAACAGACCTGGACTCGGGGAGAGGCAGCTGCGAGAGCCCTTCCC Homonota_andicola_LJAMMCNP_12495 CAAGGAAACAGACCTGGACTCGGGGAGAGGCAGCTGCGAGAGCCCTTCCC Homonota_borellii_LJAMMCNP_12116 CAAGGAAACAGACATGGACTCGGGGAGAGGCAGCTGCGAGAGCCCTTCCC Homonota_borellii_LJAMMCNP_12125 CAAGGAAACAGACATGGACTCGGGGAGAGGCAGCTGCGAGAGCCCTTCCC Homonota_darwinii_LJAMMCNP_10638 CAAGGAAGCAGACATGGACTCGGGGAGAGGCAGCTGCGAGAGCCCTTCCC Homonota_darwinii_LJAMMCNP_9813 CAAGGAAGCAGACATGGACTCGGGGAGAGGCAGCTGCGAGAGCCCTTCCC Homonota_spa_LJAMMCNP_12415 CAAGGGAACAGACATTGACTCGGGGAGAGGCAGCTGCGAGAGCCCTTCCC Homonota_spa_LJAMMCNP_5047 CAAGGGAACAGACATTGACTCGGGGAGAGGCAGCTGCGAGAGCCCTTCCC Garthia_gaudichaudi_IBEG1_1 CAAGGAAAGAGACATTGACTCGGGGACAGGAAGCTGCGAGAGCTCTTCTC Gymnodactylus_geckoides_LG_1050 CAAGGAAACAGACATTGACTCGGGGAGAGGAAGTTGCGAGAGCCCTTCTC Gymnodactylus_geckoides_LG_911 CAAGGAAACAGACATTGACTCGGGGAGAGGAAGTTGCGAGAGCCCTTCTC Phyllopezus_przewalskii_LJAMMCNP_12089 CAAGGAAAAAGACATTGACTCGGGGAGAGGAAGCTGCGAGAGCCCTTCTT Phyllopezus_pollicaris_CHUNB_57388 CAAGGAAACAGACATTGACTCGGGGAGAGGAAGCTGCGAGAGCCCTTCTC Phyllodactylus_kofordi_TG_266 CAAGGAAACAGACATTGACTCGGGGAGAGGCAGCTGCGAGAGCCCTTGTC Homonota_rupicola_RUPI_1 CAAGGAAACAGACATGGACTCGGGGAGAGGCAGCTGCGAGAGCCCTTCCC Homonota_rupicola_RUPI_2 CAAGGAAACAGACATGGACTCGGGGAGAGGCAGCTGCGAGAGCCCTTCCC Homonota_spb_MNHNP_11406 CATGGGAACAGAYGTTGACTCGGGGAGAGGCAGCTGCGAGAGCCCTTCCC Homonota_spb_MNHNP_11409 CATGGGAACAGACGTTGACTCGGGGAGAGGCAGCTGCGAGAGCCCTTCCC Homonota_taragui_LJAMMCNP_14419 CAAGGAAACAGACATGGACTCGGGGAGAGGCAGCTGCGAGAGCCCTTCCC Homonota_taragui_LJAMMCNP_14420 CAAGGAAACAGACATGGACTCGGGGAGAGGCAGCTGCGAGAGCCCTTCCC Homonota_underwoodi_LJAMMCNP_10923 CAAGGGAACAGACRTTGACTCGGGGAGAGGCAGCTGCGAGAGCCCTTCCC Homonota_underwoodi_LJAMMCNP_10931 CAAGGGAACAGACATTGACTCGGGGAGAGGCAGCTGCGAGAGCCCTTCCC Homonota_uruguayensis_UFRGS_1568 CAAGGAAACAGACATGGACTCGGGGAGAGGCAGCTGCGAGAGCCCTTCCC Homonota_uruguayensis_UFRGS_2139 CAAGGAAACAGACATGGACTCGGGGAGAGGCAGCTGCGAGAGCCCTTCCC Homonota_williamsii_LJAMMCNP_4467 CAAGGAAGCAGACCTTGACTCGGGGAGAGGCAGCTGCGAGAGCCCTTCCC Homonota_williamsii_LJAMMCNP_6517 CAAGGAAGCAGACCTTGACTCGGGGAGAGGCAGCTGCGAGAGCCCTTCCC Homonota_andicola_LJAMMCNP_12490 TGCTGTTGAAAAAGTGCAAGGAGGCTGGAGATCCACTTGTGGACCTGAAA Homonota_andicola_LJAMMCNP_12495 TGCTGTTGAAAAAGTGCAAGGAGGCTGGAGATCCACTTGTGGACCTGAAA Homonota_borellii_LJAMMCNP_12116 TGCTGCTGAAAAAGTGCAAGGAGGCTGGAAATCCACTTGTGGATCTGAAG Homonota_borellii_LJAMMCNP_12125 TGCTGCTGAAAAAGTGCAAGGAGGCTGGAAATCCACTTGTGGATCTGAAG Homonota_darwinii_LJAMMCNP_10638 TGCTGTTGAAAAAGTGCAAGGAGGCTGGAGATCCTCTTGTGGACCTGAAA Homonota_darwinii_LJAMMCNP_9813 TGCTGTTGAAAAAGTGCAAGGAGGCTGGAGATCCTCTTGTGGACCTGAAA Homonota_spa_LJAMMCNP_12415 TGCTGCTGAAAAAGTGCAAGGAGGCTGGAAAGCCACTTGTGGATCTGAAA Homonota_spa_LJAMMCNP_5047 TGCTGCTGAAAAAGTGCAAGGAGGCTGGAAAGCCACTTGTGGATCTGAAA Garthia_gaudichaudi_IBEG1_1 TGCTGTTGAAGAAGTGCAAGGAAGCTGGAAATCCACTCTCGGGCCCAACA Gymnodactylus_geckoides_LG_1050 TGCTGTTGAAGAAGTGCAAGGAAGCTGGAAATCCACTCTCAGATCTGAAA Gymnodactylus_geckoides_LG_911 TGCTGTTGAAGAAGTGCAAGGAAGCTGGAAATCCACTCTCAGATCTGAAA Phyllopezus_przewalskii_LJAMMCNP_12089 TGCTGTTGAAGAAGTGCAAGGAAGCTGGAAATCCACTCTTGGATCTGAAA Phyllopezus_pollicaris_CHUNB_57388 TGCTGTTGAAGAAGTGCAAGGAAGCTGGAAATCCACTCTTGGATCTGAAA Phyllodactylus_kofordi_TG_266 TGCTGTTGAAGAAGTGCAAGGAGGCTGGAAATCCACTCTTGGATCTGAAA Homonota_rupicola_RUPI_1 TGCTGCTGAAAAAGTGCAAGGAGGCTGGAAATCCACTTGTGGATCTGAAG Homonota_rupicola_RUPI_2 TGCTGCTGAAAAAGTGCAAGGAGGCTGGAAATCCACTTGTGGATCTGAAG Homonota_spb_MNHNP_11406 TGCTGCTGAAAAAGTGCAAGGAGGCTGGCAATCCACTTGTGGATCTGAAA Homonota_spb_MNHNP_11409 TGCTGCTGAAAAAGTGCAAGGAGGCTGGCAATCCACTTGTGGATCTGAAA Homonota_taragui_LJAMMCNP_14419 TGCTGCTGAAGAAGTGCAAGGAGGCTGGAAATCCACTTGTGGATCTGAAG Homonota_taragui_LJAMMCNP_14420 TGCTGCTGAAGAAGTGCAAGGAGGCTGGAAATCCACTTGTGGATCTGAAG Homonota_underwoodi_LJAMMCNP_10923 TGCTGTTGAAAAAGTGCAAGGAGGCTGGAAATCCACTTGTGGATCTGAAA Homonota_underwoodi_LJAMMCNP_10931 TGCTGTTGAAAAAGTGCAAGGAGGCTGGAAATCCACTTGTGGATCTGAAA Homonota_uruguayensis_UFRGS_1568 TGCTGCTGAAAAAGTGCAAGGAGGCTGGAAATCCACTTGGGGATCTGAAG Homonota_uruguayensis_UFRGS_2139 TGCTGCTGAAAAAGTGCAAGGAGGCTGGAAATCCACTTGGGGATCTGAAG Homonota_williamsii_LJAMMCNP_4467 TGCTGTTGAAAAAGTGCAAGGAGGCTGGAGATCCACTTGTGGACCTGAAA Homonota_williamsii_LJAMMCNP_6517 TGCTGTTGAAAAAGTGCAAGGAGGCTGGAGATCCACTTGTGGACCTGAAA Homonota_andicola_LJAMMCNP_12490 TCGCCAGATACCAACAAGGTGAAAGAAAACGTCCCTGGGAAATACGTTGG Homonota_andicola_LJAMMCNP_12495 TCGCCAGATACCAACAAGGTGAAAGAAAACGTCCCTGGGAAATACGTTGG Homonota_borellii_LJAMMCNP_12116 TCACCAGATACCAACAAGCTGAAAGAAAACGTCACTGGGAAATACGCTGG Homonota_borellii_LJAMMCNP_12125 TCACCAGATACCAACAAGCTGAAAGAAAACGTCACTGGGAAATACGCTGG Homonota_darwinii_LJAMMCNP_10638 TCGCCAGATACCAACAAGCTGAAAGAAAACGTCCCTGGGAAATACGTTGG Homonota_darwinii_LJAMMCNP_9813 TCGCCAGATACCAACAAGCTGAAAGAAAACGTCCCTGGGAAATACGTTGG Homonota_spa_LJAMMCNP_12415 TCACCAGATACCAACAAGCTGAAAGAAAACGTCGCTGGGAAATACGCTGG Homonota_spa_LJAMMCNP_5047 TCACCAGATACCAACAAGCTGAAAGAAAACGTCGCTGGGAAATACGCTGG Garthia_gaudichaudi_IBEG1_1 TTACCAGATACCAACGAGCTGAAAGAAAGTGTCACTGGGAGATGCAGTGG Gymnodactylus_geckoides_LG_1050 TCGCCAGATACCAATGAGCTGAAAGAAAGCACCACTGGGAAACACACTGG Gymnodactylus_geckoides_LG_911 TCGCCAGATACCAATGAGCTGAAAGAAAGCACCACTGGGAAAC?CACTGG Phyllopezus_przewalskii_LJAMMCNP_12089 TCACTGGATACCAACGAGCTGAAAGAAAGCATCACTGGGAAATGCACTGA Phyllopezus_pollicaris_CHUNB_57388 CCACCRGATACCAACGAGCTGAAAGAAAGCATCACTGGGAAATGCACGGA Phyllodactylus_kofordi_TG_266 TCAACAAATACCAACAAGCTGAAAGCAAGCATCACGGGGCAATGCGCTGG Homonota_rupicola_RUPI_1 TCACCAGATACCAACAAGCTGAAAGAAAACGTCACTGGGAAATACGCTGG Homonota_rupicola_RUPI_2 TCACCAGATACCAACAAGCTGAAAGAAAACGTCACTGGGAAATACGCTGG Homonota_spb_MNHNP_11406 TCACCAGATACCAACAAGCTGAAAGAAAACGTTGCTGGGAAATACGCTGG Homonota_spb_MNHNP_11409 TCACCAGATACCAACAAGCTGAAAGAAAACGTTGCTGGGAAATACGCTGG Homonota_taragui_LJAMMCNP_14419 TCCCCAGATACCAACAAGCTGAAAGAAAACGTCACTGGGAAATACGCTGG Homonota_taragui_LJAMMCNP_14420 TCCCCAGATACCAACAAGCTGAAAGAAAACGTCACTGGGAAATACGCTGG Homonota_underwoodi_LJAMMCNP_10923 TCACCAGATACCAACAAGCTGAAAGAAAACGTCGCTGGGAAATACGCTGG Homonota_underwoodi_LJAMMCNP_10931 TCACCAGATACCAACAAGCTGAAAGAAAACGTCGCTGGGAAATACGCTGG Homonota_uruguayensis_UFRGS_1568 TCATCAGATACCAACAAGCTGAAAGAAAACGTCACTGGGAAATACGCTGG Homonota_uruguayensis_UFRGS_2139 TCATCAGATACCAACAAGCTGAAAGAAAACGTCACTGGGAAATACGCTGG Homonota_williamsii_LJAMMCNP_4467 TCGCCAGATACCAACAAGCTGAAAGAAAACGTCCCTGGGAAATACGTTGG Homonota_williamsii_LJAMMCNP_6517 TCGCCAGATACCAACAAGCTGAAAGAAAACGTCCCTGGGAAATACGTTGG Homonota_andicola_LJAMMCNP_12490 CGAAACTCTGGCCATAGGCCTTGAAGGGCAGTCCCCCCTTCCGAGCAGCG Homonota_andicola_LJAMMCNP_12495 CGAAACTCTGGCCATAGGCCTTGAAGGGCAGTCCCCCCTTCCGAGCAGCG Homonota_borellii_LJAMMCNP_12116 CGAAACTCTGGCCCTAGGCCTTGAAGGGCAGTTCCCCCTTTCGAGCAGTG Homonota_borellii_LJAMMCNP_12125 CGAAACTCTGGCCCTAGGCCTTGAAGGGCAGTTCCCCCTTTCGAGCAGTG Homonota_darwinii_LJAMMCNP_10638 CGAAACTCTGGCCGTAGGCCTTGAAGGGCAGTCCCCCCTTCCGAGCAGCG Homonota_darwinii_LJAMMCNP_9813 CGAAACTCTGGCCGTAGGCCTTGAAGGGCAGTCCCCCCTTCCGAGCAGCG Homonota_spa_LJAMMCNP_12415 CGAAACTCTGGCCTTAGGCCTTGAAGGGCAGTTCCCCCTTTCGAGCAGTG Homonota_spa_LJAMMCNP_5047 CGAAACTCTGGCCTTAGGCCTTGAAGGGCAGTTCCCCCTTTCGAGCAGTG Garthia_gaudichaudi_IBEG1_1 GGAAGCTCCGGCTGTAGACCTAGAAGGGCAGTTCCCCCTTTCGAGCAATG Gymnodactylus_geckoides_LG_1050 GGAAGCTCTGGCCATAGACCTTGAAGGGCAGTTCCCCCTTTCGAACAGCC Gymnodactylus_geckoides_LG_911 GGAAGCTCTGGCCATAGACCTTGAAGGGCAGTTCCCCCTTTCGA?CAGCC Phyllopezus_przewalskii_LJAMMCNP_12089 GGAAGCTCCGGCCATAGACCTTGACAGGCAGTTCCCCCTTTCGAGCAGTC Phyllopezus_pollicaris_CHUNB_57388 GGAAGCSCCGGCCATAGACCTTGACGGGCAGTTCCCCCTTCCGAGCAGTC Phyllodactylus_kofordi_TG_266 GGAAACTCCGGCCATAGACCTTGAAGGGCAGTTCCCCCTTTTGAGCAGCG Homonota_rupicola_RUPI_1 CGAAACTCTGGCCCTAGGCCTTGAAGGGCAGTTCCCCCTTTCGAGCAGTG Homonota_rupicola_RUPI_2 CGAAACTCTGGCCCTAGGCCTTGAAGGGCAGTTCCCCCTTTCGAGCAGTG Homonota_spb_MNHNP_11406 CGAAACTCTGGCCATAGGCCCTGAAGGGCAGTTCCCCCTTTCAAGCAGTG Homonota_spb_MNHNP_11409 CGAAACTCTGGCCATAGGCCCTGAAGGGCAGTTCCCCCTTTCAAGCAGTG Homonota_taragui_LJAMMCNP_14419 CGAAACTCTGGCCCTAGGCCTTGAAGGGCAGTTCCCCCTTTCGAGCAGTG Homonota_taragui_LJAMMCNP_14420 CGAAACTCTGGCCCTAGGCCTTGAAGGGCAGTTCCCCCTTTCGAGCAGTG Homonota_underwoodi_LJAMMCNP_10923 CGAAACTCTGGCCATAGGCCTTGAAGGGCAGTTCCCCCTTTCGAGCAGTG Homonota_underwoodi_LJAMMCNP_10931 CGAAACTCTGGCCATAGGCCTTGAAGGGCAGTTCCCCCTTTCGAGCAGTG Homonota_uruguayensis_UFRGS_1568 CGAAACTCTGGCCCTAGGCCTTGAAGGGCAGTTCCCCCTTTCGAGCAGTG Homonota_uruguayensis_UFRGS_2139 CGAAACTCTGGCCCTAGGCCTTGAAGGGCAGTTCCCCCTTTCGAGCAGTG Homonota_williamsii_LJAMMCNP_4467 CGAAACTCTGGCCGTAGGCCTTGAAGGGCAGTCCCCCCTTCCGAGCAGCG Homonota_williamsii_LJAMMCNP_6517 CGAAACTCTGGCCRTAGGCCTTGAAGGGCAGTCCCCCCTTCCGAGCAGCG Homonota_andicola_LJAMMCNP_12490 GTGGTCCGAAGGCCTCCACCTGGCCTGGATCTCAGCCGGCCAACA---GT Homonota_andicola_LJAMMCNP_12495 GTGGTCCGAAGGCCTCCACCTGGCCTGGATCTCAGCCGGCCAACA---GT Homonota_borellii_LJAMMCNP_12116 GTGGTCCGAAGGCATCCACGTGGCCTGGATCTCAGCTAGCCAACA---GT Homonota_borellii_LJAMMCNP_12125 GTGGTCCGAAGGCATCCACGTGGCCTGGATCTCAGCTAGCCAACA---GT Homonota_darwinii_LJAMMCNP_10638 GTGGTCCGAAGGCATCCACCTGGCCTGGATCTCAGGTAGCCAACA---GT Homonota_darwinii_LJAMMCNP_9813 GTGGTCCGAAGGCATCCACCTGGCCTGGATCTCAGGTAGCCAACA---GT Homonota_spa_LJAMMCNP_12415 GTGGTCCGAAGGCATCCACGTGGCCTGGATCTCAGCCGGCCAACA---GT Homonota_spa_LJAMMCNP_5047 GTGGTCCGAAGGCATCCACGTGGCCTGGATCTCAGCCGGCCAACA---GT Garthia_gaudichaudi_IBEG1_1 GTGGTCCTAATGCACCCACACGGCCTGGATCTCAGCTAGCCCCCA---GT Gymnodactylus_geckoides_LG_1050 GTGGTCCGAAGGCATCCACATGGCCTGGGTCCCAGCTAGCCAACA---GT Gymnodactylus_geckoides_LG_911 GTGGTCCGAAGGCATCCACATGGCCTGGGTCCCAGCTAGCCAACA---GT Phyllopezus_przewalskii_LJAMMCNP_12089 GTGGTCCTAAGGCATCCACATGGCCTGGGTCTCCGCTAGCCAACA---GT Phyllopezus_pollicaris_CHUNB_57388 GTGGTCCTAAGGCATCCACATGGCCTGGGTCTCCGCTAGCCAACA---GT Phyllodactylus_kofordi_TG_266 GTGGTCCTAAGGCATCCACGTGGCCTGGATCTCAGCTGGCCAACA---GT Homonota_rupicola_RUPI_1 GTGGTCCGAAGGCATCCACGTGGCCTGGATCTCAGCTAGCCAACA---GT Homonota_rupicola_RUPI_2 GTGGTCCGAAGGCATCCACGTGGCCTGGATCTCAGCTAGCCAACA---GT Homonota_spb_MNHNP_11406 GTGGTCCGAAGGCATCCACGTGGCCTGGATCTCAGCCGGCCAACAACAGT Homonota_spb_MNHNP_11409 GTGGTCCGAAGGCATCCACGTGGCCTGGATCTCAGCCGGCCAACAACAGT Homonota_taragui_LJAMMCNP_14419 GTGGTCCGAAGGCATCCACGTGGCCTGGATCTCAGCTAGCCAACA---GT Homonota_taragui_LJAMMCNP_14420 GTGGTCCGAAGGCATCCACGTGGCCTGGATCTCAGCTAGCCAACA---GT Homonota_underwoodi_LJAMMCNP_10923 GTGGTCCGAAGGCATCCACGTGGCCTGGATCTCAGCCKGCCAACA---GC Homonota_underwoodi_LJAMMCNP_10931 GTGGTCCGAAGGCATCCACGTGGCCTGGATCTCAGCCKGCCAACA---GC Homonota_uruguayensis_UFRGS_1568 GTGGTCCGAAGGCATCCACGTGGCCTGGATCTCAGCTAGCCAACA---GT Homonota_uruguayensis_UFRGS_2139 GTGGTCCGAAGGCATCCACGTGGCCTGGATCTCAGCTAGCCAACA---GT Homonota_williamsii_LJAMMCNP_4467 GTGGTCCGAAGGCATCCACCTGGCCTGGATCTCAGGTAGCCAACA---GT Homonota_williamsii_LJAMMCNP_6517 GTGGTCCGAAGGCATCCACCTGGCCTGGATCTCAGGTAGCCAACA---GT Homonota_andicola_LJAMMCNP_12490 CTGTTTCCTAAGTGCTCCTATCATGATATTGTGGATGCGTGCAAAATAGC Homonota_andicola_LJAMMCNP_12495 CTGTTTCCTAAGTGCTCCTATCATGATATTGTGGATGCGTGCAAAATAGC Homonota_borellii_LJAMMCNP_12116 CTGTTTCCTAAGTGCTCCTATCACGATATTGTGGATGCGTGCAAAATAGC Homonota_borellii_LJAMMCNP_12125 CTGTTTCCTAAGTGCTCCTATCACGATATTGTGGATGCGTGCAAAATAGC Homonota_darwinii_LJAMMCNP_10638 CTGTTTCCTAAGTGCTCCTATCATGATATTGTGGATGCGTGCAAAATAGC Homonota_darwinii_LJAMMCNP_9813 CTGTTTCCTAAGTGCTCCTATCATGATATTGTGGATGCGTGCAAAATAGC Homonota_spa_LJAMMCNP_12415 CTGTTTCCTAAGTGCTCCTATCATGATATTGTGGATGCGTGCAAAATAGC Homonota_spa_LJAMMCNP_5047 CTGTTTCCTAAGTGCTCCTATCATGATATTGTGGATGCGTGCAAAATAGC Garthia_gaudichaudi_IBEG1_1 CCGTTCCCTAAGTGTTCCTATCATGATATTGTGGATGCGTGCAAAATAGC Gymnodactylus_geckoides_LG_1050 CCGTCTCTTAAGTGTTCCTATCATGATATTGTGGATGTCTGCAAAATAGC Gymnodactylus_geckoides_LG_911 CCGTCTCTTAAGTGTTCCTATCATGATATTGTGGATGTCTGCAAAATAGC Phyllopezus_przewalskii_LJAMMCNP_12089 CCGTTTCTTAAGTGTTCCTATCATGATATTGTGGATGCCTGCAAAATAGC Phyllopezus_pollicaris_CHUNB_57388 CCGTTTCTTAAGTGTTCCTATCATGATATTGTGGATGCCTGCAAAATAGC Phyllodactylus_kofordi_TG_266 CCGCTTCCTAAGAGTTCCTATCATGATATTGTGGATGCGTGCAGAATAGC Homonota_rupicola_RUPI_1 CTGTTTCCTAAGTGCTCCTATCACGATATTGTGGATGCGTGCAAAATAGC Homonota_rupicola_RUPI_2 CTGTTTCCTAAGTGCTCCTATCACGATATTGTGGATGCGTGCAAAATAGC Homonota_spb_MNHNP_11406 CTGTTTCCTAAGTGYTCCTATCATGATATTGTGGATGCGTGCAAAATAGC Homonota_spb_MNHNP_11409 CTGTTTCCTAAGTGTTCCTATCATGATATTGTGGATGCGTGCAAAATAGC Homonota_taragui_LJAMMCNP_14419 CTGTTTCCTAAGTGCTCCTATCACGATATTGTGGATGCGTGCAAAATAGC Homonota_taragui_LJAMMCNP_14420 CTGTTTCCTAAGTGCTCCTATCACGATATTGTGGATGCGTGCAAAATAGC Homonota_underwoodi_LJAMMCNP_10923 CTGTTTCCTAAGTGCTCCTATCAWGATATTGTGGATGCGTGCAAAATAGC Homonota_underwoodi_LJAMMCNP_10931 CTGTTTCCTAAGTGCTCCTATCAAGATATTGTGGATGCGTGCAAAATAGC Homonota_uruguayensis_UFRGS_1568 CTGTTTCCTAAGTGCTCCTATCACGATATTGTGGATGCGTGCAAAATAGC Homonota_uruguayensis_UFRGS_2139 CTGTTTCCTAAGTGCTCCTATCACGATATTGTGGATGCGTGCAAAATAGC Homonota_williamsii_LJAMMCNP_4467 CTGTTTCCTAAGTGCTCCTATCATGATATTGTGGATGCGTGCAAAATAGC Homonota_williamsii_LJAMMCNP_6517 CTGTTTCCTAAGTGCTCCTATCATGATATTGTGGATGCGTGCAAAATAGC Homonota_andicola_LJAMMCNP_12490 CCTCAGTGCCATGAACCTGAACAGGTCGTCCATTCTGATGGGGAACGAAG Homonota_andicola_LJAMMCNP_12495 CCTCAGTGCCATGAACCTGAACAGGTCGTCCATTCTGATGGGGAACGAAG Homonota_borellii_LJAMMCNP_12116 CCTCAGTGCCATGAACCTGAACAGGTCGTCCATTCTGATGGGGAACGAAG Homonota_borellii_LJAMMCNP_12125 CCTCAGTGCCATGAACCTGAACAGGTCGTCCATTCTGATGGGGAACGAAG Homonota_darwinii_LJAMMCNP_10638 CCTCAGTGCCATGAACCTGAACAGGTCGTCCATTCTGATGGGGAACGAAG Homonota_darwinii_LJAMMCNP_9813 CCTCAGTGCCATGAACCTGAACAGGTCGTCCATTCTGATGGGGAACGAAG Homonota_spa_LJAMMCNP_12415 CCTCAGTGCCATGAACCTGAACAGGCCGTCCCTTCTGATGGGGAACGAAG Homonota_spa_LJAMMCNP_5047 CCTCAGTGCCATGAACCTGAACAGGCCGTCCCTTCTGATGGGGAACGAAG Garthia_gaudichaudi_IBEG1_1 CCTCAGTGCCCTGAATCCAAACAGGTCATCCGTTCTTCTGGTGAACGAAG Gymnodactylus_geckoides_LG_1050 TCTCAGCACCATGAATCTGAACAGGTCGTCCATTCTGATGGGGAACCAAG Gymnodactylus_geckoides_LG_911 TCTCAGCACCATGAATCTGAACAGGTCGTCCATTCTGATGGGGAACCAAG Phyllopezus_przewalskii_LJAMMCNP_12089 CCTCAGTGCCATGAATCTGAACAGGTCGCCCATTCTGATGGGGAACGAAC Phyllopezus_pollicaris_CHUNB_57388 CCTCAGTGCCATGAATCTCAACAGATCRTCCATTCTGATGGGGAACGAAC Phyllodactylus_kofordi_TG_266 CCTCAGTGCCATGAATCTGAACAGGTCATCCGTTCTGATGGGGAGTGAAG Homonota_rupicola_RUPI_1 CCTCAGTGCCATGAACCTGAACAGGTCGTCCATTCTGATGGGGAACGAAG Homonota_rupicola_RUPI_2 CCTCAGTGCCATGAACCTGAACAGGTCGTCCATTCTGATGGGGAACGAAG Homonota_spb_MNHNP_11406 CCTCAGTGCCATGAACCTGAACAGGCCGTCCCTTCTGATGGGGAACAAAG Homonota_spb_MNHNP_11409 CCTCAGTGCCATGAACCTGAACAGGCCGTCCCTTCTGATGGGGAACAAAG Homonota_taragui_LJAMMCNP_14419 CCTCAGTGCCATGAACCTGAACAGGTCGTCCATTCTGATGGGGAACGAAG Homonota_taragui_LJAMMCNP_14420 CCTCAGTGCCATGAACCTGAACAGGTCGTCCATTCTGATGGGGAACGAAG Homonota_underwoodi_LJAMMCNP_10923 CCTCAGTGCCATGAACCTGAACAGGCCGTCCCTTCTGATGGGGAACGAAG Homonota_underwoodi_LJAMMCNP_10931 CCTCAGTGCCATGAACCTGAACAGGCCGTCCCTTCTGATGGGGAACGAAG Homonota_uruguayensis_UFRGS_1568 CCTCAGTGCCATGAACCTGAACAGGTCGTCCATTCTGATGGGGAACGAAG Homonota_uruguayensis_UFRGS_2139 CCTCAGTGCCATGAACCTGAACAGGTCGTCCATTCTGATGGGGAACGAAG Homonota_williamsii_LJAMMCNP_4467 CCTCAGTGCCATGAACCTGAACAGGTCGTCCATTCTGATGGGGAACGAAG Homonota_williamsii_LJAMMCNP_6517 CCTCAGTGCCATGAACCTGAACAGGTCGTCCATTCTGATGGGGAACGAAG Homonota_andicola_LJAMMCNP_12490 AACCACGTAATTCAGAATGTCCTAAAACCATCAGTGAAGGGGAAACCACC Homonota_andicola_LJAMMCNP_12495 AACCACGTAATTCAGAATGTCCTAAAACCATCAGTGAAGGGGAAACCACC Homonota_borellii_LJAMMCNP_12116 AACAACGTAATTCAGAATGTCCTAAAACCATCAGTGAAGGAAAAACCACC Homonota_borellii_LJAMMCNP_12125 AACAACGTAATTCAGAATGTCCTAAAACCATCAGTGAAGGAAAAACCACC Homonota_darwinii_LJAMMCNP_10638 AACAACGTAATTCAGAATGTCCTAAAACCACCAGTGAAGGGAAAACCACC Homonota_darwinii_LJAMMCNP_9813 AACAACGTAATTCAGAATGTCCTAAAACCACCAGTGAAGGGAAAACCACC Homonota_spa_LJAMMCNP_12415 AACAATGTAATTCAGAATGTCCTAAAACCATCAGTGAAGGGAAAACCGCC Homonota_spa_LJAMMCNP_5047 AACAATGTAATTCAGAATGTCCTAAAACCATCAGTGAAGGGAAAACCRCC Garthia_gaudichaudi_IBEG1_1 AACAATGTAATTCAGAATGTCCTAAAACCATCAGTGAAGGAAAAACCACC Gymnodactylus_geckoides_LG_1050 TGCAGTGTAATCCGGGATGTCCAAAAACCATCCATGAAGGGGAAACTGCC Gymnodactylus_geckoides_LG_911 TGCAGTGTAATCCGGGATGTCCAAAAACCATCCATGAAGGGGAAACTGCC Phyllopezus_przewalskii_LJAMMCNP_12089 AGCAATGTAATCCAGAATGTCCTAAAACCATCGGTGAAGAGAAAACCGCC Phyllopezus_pollicaris_CHUNB_57388 AGCAATGTAATCCAGAATGTCCTAAAACCATCGGGGAAGAGAAAACCGCC Phyllodactylus_kofordi_TG_266 AACAATGTAACTCAAAATGTCCTAAAACCATCAGTGAAGGGGAAAACACC Homonota_rupicola_RUPI_1 AACAACGTAATTCAGAATGTCCTAAAACCATCAGTGAAGGAAAAACCACC Homonota_rupicola_RUPI_2 AACAACGTAATTCAGAATGTCCTAAAACCATCAGTGAAGGAAAAACCACC Homonota_spb_MNHNP_11406 AACAATGTAATTCAGAATGTCCTAAAACCATCAGTGAAGGAAAAACCACC Homonota_spb_MNHNP_11409 AACAATGTAATTCAGAATGTCCTAAAACCATCAGTGAAGGAAAAACCACC Homonota_taragui_LJAMMCNP_14419 AACAACGTAATTCAGAATGTCCTAAAACCATCAGTGAAGGAAAAACCACC Homonota_taragui_LJAMMCNP_14420 AACAACGTAATTCAGAATGTCCTAAAACCATCAGTGAAGGAAAAACCACC Homonota_underwoodi_LJAMMCNP_10923 AACAATGTAATTCAGAATGTCCTAAAACCATCAGTGAAGGAAAAACCACC Homonota_underwoodi_LJAMMCNP_10931 AACAATGTAATTCAGAATGTCCTAAAACCATCAGTGAAGGAAAAACCACC Homonota_uruguayensis_UFRGS_1568 AACAACGTAATTCAGAATGTCCTAAAACCATCAGTGAAGGAAAAACCACC Homonota_uruguayensis_UFRGS_2139 AACAACGTAATTCAGAATGTCCTAAAACCATCAGTGAAGGAAAAACCACC Homonota_williamsii_LJAMMCNP_4467 AACAACGTAATTCAGARTGTCCTAAAACCACCAGTGAAGGGAAAACCACC Homonota_williamsii_LJAMMCNP_6517 AACAACGTAATTCAGAGTGTCCTAAAACCACCAGTGAAGGRAAAACCACC Homonota_andicola_LJAMMCNP_12490 ATGTTGCAGGAGGCACAAGAGTTACCTTTAAATGTTCAGGGTGACCCAGG Homonota_andicola_LJAMMCNP_12495 ATGTTGCAGGAGGCACAAGAGTTACCTTTAAATGTTCAGGGTGACCCAGG Homonota_borellii_LJAMMCNP_12116 ATGTCGCAGGAGGCGCAAGAGTTACCTTTAAATGTTCAGGGTGAGCCAGG Homonota_borellii_LJAMMCNP_12125 ATGTCGCAGGAGGCGCAAGAGTTACCTTTAAATGTTCAGGGTGAGCCAGG Homonota_darwinii_LJAMMCNP_10638 ATGTTGCAGGAGGCACAAGAGTTACCGTTAAATGTCCAGGGTGACCCGGG Homonota_darwinii_LJAMMCNP_9813 ATGTTGCAGGAGGCACAAGAGTTACCGTTAAATGTCCAGGGTGACCCGGG Homonota_spa_LJAMMCNP_12415 ATGTTGCAGGAGGCACAAGAGTTACCTTTAAATGCCCAGGTTGACCCAGG Homonota_spa_LJAMMCNP_5047 ATGTTGCAGGAGGCACAAGAGTTACCTTTAAATGCCCAGGTTGACCCAGG Garthia_gaudichaudi_IBEG1_1 ATGTTGCAGGAGGCAGGAAAATTACCTTTAAAAGTTCAGGGTGACCCAGG Gymnodactylus_geckoides_LG_1050 TTGTTGCAGGAGATAGAAAAATTACCCCTAAACGTTCAGGCTGACCCAGG Gymnodactylus_geckoides_LG_911 TTGTTGCAGGAGATAGAAAAATTACCCCTAAACGTTCAGGCTGACCCAGG Phyllopezus_przewalskii_LJAMMCNP_12089 ATGTTGCAGGAGGCGGAAAAATTACCTTTAAACGTTCAGGGTGACCCAGG Phyllopezus_pollicaris_CHUNB_57388 ATGTTGCAGGAGGCGGAAAAATTACCTTTAAACATTCAGGGTGACCCAGG Phyllodactylus_kofordi_TG_266 GTGTTGCAGGAGGCACAAAAGTTWCCTTTAAATGTTCAGGGTGGCCCAGG Homonota_rupicola_RUPI_1 ATGTTGCAGGAGGTGCAAGAGTTACCTTTAAATGTTCAGGGTGAGCCAGG Homonota_rupicola_RUPI_2 ATGTTGCAGGAGGTGCAAGAGTTACCTTTAAATGTTCAGGGTGAGCCAGG Homonota_spb_MNHNP_11406 ATGTTGCAGGAGGCACAAGAGTTACCTTTAAATGCCCAGGTTGACCCAGG Homonota_spb_MNHNP_11409 ATGTTGCAGGAGGCACAAGAGTTACCTTTAAATGCCCAGGTTGACCCAGG Homonota_taragui_LJAMMCNP_14419 ATGTTGCAGGAGGCGCAAGAGTTCCCTTTAAATGTTCAGGGTGAGCCAGG Homonota_taragui_LJAMMCNP_14420 ATGTTGCAGGAGGCGCAAGAGTTCCCTTTAAATGTTCAGGGTGAGCCAGG Homonota_underwoodi_LJAMMCNP_10923 ATGTTGCAGGAGGCACAAGAGTTACCTTTAAATGCCCAGGTTGACCCAGG Homonota_underwoodi_LJAMMCNP_10931 ATGTTGCAGGAGGCACAAGAGTTACCTTTAAATGCCCAGGTTGACCCAGG Homonota_uruguayensis_UFRGS_1568 ATGTTGCAGGAGGCGCAAGAGTTACCTTTAAATGTTCAGGGTGAGCCAGG Homonota_uruguayensis_UFRGS_2139 ATGTTGCAGGAGGCGCAAGAGTTACCTTTAAATGTTCAGGGTGAGCCAGG Homonota_williamsii_LJAMMCNP_4467 ATGTTGCAGGAGGCACAAGAGTTACCGTTAAATGTCCAGGGTGACCCMGG Homonota_williamsii_LJAMMCNP_6517 ATGTTGCAGGAGGCACAAGAGTTACCGTTAAATGTYCAGGGTGACCCAGG Homonota_andicola_LJAMMCNP_12490 GGCACTG??????????????????????????????????????? Homonota_andicola_LJAMMCNP_12495 GGCACTG??????????????????????????????????????? Homonota_borellii_LJAMMCNP_12116 GGCACTGTGGTCCCTTCCCACAGAGAGGTCGCCTTTTTTGCCCCCA Homonota_borellii_LJAMMCNP_12125 GGCACTGTGGTCCCTTCCCACAGAGAGGTCGCCTTTTTTGCCCCCA Homonota_darwinii_LJAMMCNP_10638 GGCACTGTGGTCCCTTCCAACAGA?????????????????????? Homonota_darwinii_LJAMMCNP_9813 GGCACTGTGGTCCCTCC????????????????????????????? Homonota_spa_LJAMMCNP_12415 GGCACTGTGGTCCCTTCCAACAGAGAGGTCGCCTTTTTTGCCCACA Homonota_spa_LJAMMCNP_5047 GGCACTGTGGTCCCTTCCAACA???????????????????????? Garthia_gaudichaudi_IBEG1_1 GTCCCTGTGGTCCCTTCCAACAGAGAGGATGCCTTTTTTGCCCGCC Gymnodactylus_geckoides_LG_1050 GTCACCATGGGCCGTTCCAACAGAGAGTTTGCCTTTTTTGCCCACG Gymnodactylus_geckoides_LG_911 GTCACCATGGGCCGTTCCAACAGAGAGGTTGCCTTTTTTGCCCACG Phyllopezus_przewalskii_LJAMMCNP_12089 GGCACCGTGGTCCCTTCCAACAGAGAGCTTGCCTTTTTTGCCCACC Phyllopezus_pollicaris_CHUNB_57388 GGCACCGTGGTCCCTTCCAACAGAGAGGTTGCCTTTTTTGTCCACC Phyllodactylus_kofordi_TG_266 GTCACTGTGGTCCCTTCCAGCAGAGAGGTTGCCTTTTTTGC????? Homonota_rupicola_RUPI_1 GGCACTGTGGTCCCTTCCCACAGAGAGGTCGCCTTTTTTGCCCCCA Homonota_rupicola_RUPI_2 GGCACTGTGGTCCCTTCCCACAGAGAGGTCGCCTTTTTTGCCCCCA Homonota_spb_MNHNP_11406 GGCACTGTGGTCCCTTCCAACAGAGAGGTTGCCTTTTTTGCCCACA Homonota_spb_MNHNP_11409 GGCACTGTGGTCCCTTCCAACAGAGAGGTTGCCTTTTTTGCCCACA Homonota_taragui_LJAMMCNP_14419 GGCACTGTGGTCCCTTCCCACAGAGA???????????????????? Homonota_taragui_LJAMMCNP_14420 GGCACTGTGGTCCCTTCCCACAGAGAGGTCGCCTTTTTTGCCCCCA Homonota_underwoodi_LJAMMCNP_10923 GGCACTGTGGTCCCTTCCAACAGAGAGGTCGCCTTTTTTGCCCACA Homonota_underwoodi_LJAMMCNP_10931 GGCACTGTGGTCCCTTCCAACAGAGA???????????????????? Homonota_uruguayensis_UFRGS_1568 GGCACTGTGGTCCCTTCCCACAGAGAGGTCGCCTTTTTTGCCCCCA Homonota_uruguayensis_UFRGS_2139 GGCACTGTGGTCCCTTCCCACAGAGAGGTCGCCTTTTTTGCCCCCA Homonota_williamsii_LJAMMCNP_4467 GGCACTGTGGTCCCTTCCAACAGAGAGGTTGCCTTTTTTGCCCCCA Homonota_williamsii_LJAMMCNP_6517 GGCACTGTGGTCCCTTCCAACAGAGAGGTTGCCTTTTTTGCCCCCA ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 546; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 546; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 546; END; BEGIN TREES; Title PRLR_BI; ID 015b7b51a5d09; LINK Taxa = PRLR; TRANSLATE [0] 1 Homonota_andicola_LJAMMCNP_12490, [1] 2 Homonota_andicola_LJAMMCNP_12495, [2] 3 Homonota_borellii_LJAMMCNP_12116, [3] 4 Homonota_borellii_LJAMMCNP_12125, [4] 5 Homonota_darwinii_LJAMMCNP_10638, [5] 6 Homonota_darwinii_LJAMMCNP_9813, [6] 7 Homonota_spa_LJAMMCNP_12415, [7] 8 Homonota_spa_LJAMMCNP_5047, [8] 9 Garthia_gaudichaudi_IBEG1_1, [9] 10 Gymnodactylus_geckoides_LG_1050, [10] 11 Gymnodactylus_geckoides_LG_911, [11] 12 Phyllopezus_przewalskii_LJAMMCNP_12089, [12] 13 Phyllopezus_pollicaris_CHUNB_57388, [13] 14 Phyllodactylus_kofordi_TG_266, [14] 15 Homonota_rupicola_RUPI_1, [15] 16 Homonota_rupicola_RUPI_2, [16] 17 Homonota_spb_MNHNP_11406, [17] 18 Homonota_spb_MNHNP_11409, [18] 19 Homonota_taragui_LJAMMCNP_14419, [19] 20 Homonota_taragui_LJAMMCNP_14420, [20] 21 Homonota_underwoodi_LJAMMCNP_10923, [21] 22 Homonota_underwoodi_LJAMMCNP_10931, [22] 23 Homonota_uruguayensis_UFRGS_1568, [23] 24 Homonota_uruguayensis_UFRGS_2139, [24] 25 Homonota_williamsii_LJAMMCNP_4467, [25] 26 Homonota_williamsii_LJAMMCNP_6517; TREE con_50_majrule = ((14:0.07671772,(9:0.1423859,((10:0.005625645,11:0.002443058):0.1311083,(12:0.02161916,13:0.03603131):0.03534905):0.03386656):0.0366787):0.03313409,(((7:0.006424392,8:0.002480201):0.01335653,(17:0.002341538,18:0.002534483):0.03030893,(21:0.002365437,22:0.003377262):0.009222235):0.0294436,(((1:0.002462163,2:0.002495771):0.02562779,((5:0.002554047,6:0.006820739):0.01355513,(25:0.002334591,26:0.003981913):0.01104748):0.02271009):0.04595781,((3:0.002259309,4:0.002436733):0.005415136,(15:0.00235525,16:0.002385061):0.005430526,(19:0.002335452,20:0.002351692):0.01167777,(23:0.002317967,24:0.003132422):0.01084171):0.02665403):0.01180293):0.03313409); END; BEGIN TREES; Title PRLR_ML; ID 015b7b8ab8c333; LINK Taxa = PRLR; TRANSLATE [0] n0 Homonota_andicola_LJAMMCNP_12490, [1] n1 Homonota_andicola_LJAMMCNP_12495, [2] n2 Homonota_borellii_LJAMMCNP_12116, [3] n3 Homonota_borellii_LJAMMCNP_12125, [4] n4 Homonota_darwinii_LJAMMCNP_10638, [5] n5 Homonota_darwinii_LJAMMCNP_9813, [6] n6 Homonota_spa_LJAMMCNP_12415, [7] n7 Homonota_spa_LJAMMCNP_5047, [8] n8 Garthia_gaudichaudi_IBEG1_1, [9] n9 Gymnodactylus_geckoides_LG_1050, [10] n10 Gymnodactylus_geckoides_LG_911, [11] n11 Phyllopezus_przewalskii_LJAMMCNP_12089, [12] n12 Phyllopezus_pollicaris_CHUNB_57388, [13] n13 Phyllodactylus_kofordi_TG_266, [14] n14 Homonota_rupicola_RUPI_1, [15] n15 Homonota_rupicola_RUPI_2, [16] n16 Homonota_spb_MNHNP_11406, [17] n17 Homonota_spb_MNHNP_11409, [18] n18 Homonota_taragui_LJAMMCNP_14419, [19] n19 Homonota_taragui_LJAMMCNP_14420, [20] n20 Homonota_underwoodi_LJAMMCNP_10923, [21] n21 Homonota_underwoodi_LJAMMCNP_10931, [22] n22 Homonota_uruguayensis_UFRGS_1568, [23] n23 Homonota_uruguayensis_UFRGS_2139, [24] n24 Homonota_williamsii_LJAMMCNP_4467, [25] n25 Homonota_williamsii_LJAMMCNP_6517; TREE tree_1 = (((((((n1:0.00000116921389288694,n0:0.00000116921389288694):0.014476887929033653,((n25:0.00000116921389288694,n24:0.00000116921389288694):0.006336943310211339,(n4:0.00000116921389288694,n5:0.0024841757230691748):0.006766199894530092):0.012334970125249948):0.027488880045096618,((((n2:0.00000116921389288694,n3:0.00000116921389288694):0.001848725230534861,(n23:0.00000116921389288694,n22:0.00000116921389288694):0.005596383737819564):0.00000116921389288694,(n19:0.00000116921389288694,n18:0.00000116921389288694):0.005570714418927738):0.00000116921389288694,(n14:0.00000116921389288694,n15:0.00000116921389288694):0.001848179695764386):0.01449732141192611):0.005669656285048796,((n21:0.00000116921389288694,n20:0.00000116921389288694):0.0043243872249613576,((n7:0.00000116921389288694,n6:0.0023151200095738213):0.007016737445606816,(n16:0.00000116921389288694,n17:0.00000116921389288694):0.017206389826237137):0.001343830323812121):0.01687855876678637):0.04111342762657019,n13:0.047711023069518146):0.0211876946329621,n8:0.09123864361851183):0.009852335906362608,((n9:0.0019299680703685337,n10:0.00000116921389288694):0.0838627771117189,(n11:0.011890408985501845,n12:0.021076765485385864):0.020435739192019242):0.009852335906362608); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1493022235953; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 9009023117554276998; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 6281971157910876598; mqVersion 320; checksumv 0 3 2687177978 null getNumChars 546 numChars 546 getNumTaxa 26 numTaxa 26 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 254679.0 sumSquares -4.6116860184273756E18 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 943 754; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #9009023117554276998 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #9009023117554276998; getWindow; tell It; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 843 682; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.arrow; endTell; setActive; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #9009023117554276998 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 015b7b51a5d09; toggleUseWeights off; endTell; setAssignedID 1728.1492422604750.6479954684818890346; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 843 682; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.reroot; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; makeTreeWindow #9009023117554276998 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 2; setTreeBlockID 015b7b8ab8c333; toggleUseWeights off; endTell; setAssignedID 3975.1492426343086.5648815333041928506; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 843 682; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #6281971157910876598 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 843 682; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;