#NEXUS [written Mon Apr 24 10:08:44 CEST 2017 by Mesquite version 3.2 (build 801) at HG17209/172.30.18.79] BEGIN TAXA; TITLE ACA4; DIMENSIONS NTAX=24; TAXLABELS Homonota_andicola_LJAMMCNP_12490 Homonota_andicola_LJAMMCNP_12494 Homonota_borellii_LJAMMCNP_12116 Homonota_borellii_LJAMMCNP_12125 Homonota_darwinii_LJAMMCNP_11424 Homonota_darwinii_LJAMMCNP_9266 Homonota_spa_LJAMMCNP_10505 Homonota_spa_LJAMMCNP_10528 Homonota_spb_MNHNP_11406 Homonota_spb_MNHNP_11409 Homonota_taragui_LJAMMCNP_14419 Homonota_taragui_LJAMMCNP_14420 Homonota_underwoodi_LJAMMCNP_10923 Homonota_whitii_LJAMMCNP_12110 Homonota_whitii_LJAMMCNP_12111 Homonota_williamsii_LJAMMCNP_4467 Homonota_williamsii_LJAMMCNP_6517 Homonota_uruguayensis_UFRGS_1568 Garthia_gaudichaudi_IBEG1_1 Phyllopezus_przewalskii_LJAMMCNP_12089 Phyllopezus_pollicaris_CHUNB_57388 Phyllodactylus_kofordi_TG_266 Gymnodactylus_geckoides_LG_1050 Gymnodactylus_geckoides_LG_911 ; END; BEGIN CHARACTERS; TITLE ACA4_Matrix; DIMENSIONS NCHAR=1215; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Homonota_andicola_LJAMMCNP_12490 GGTGGTCAGTATTTCTTAAACCTCAGGCTTGCAGTCTCAAGATGTCATTAATTGAATAAAATAATGGCCT--------------------TGGCACTG----CAATATCGAACAACATTGAACCTATCTCACCTTACAACTTGAGCTGCATGT------------AAGGTCTGTTGCTC------AGAACACTGCATTGTATGTAGAAAGCCCCAAGCTTAACTCCTGACATCTCTGGGCCAAAGGATCTAGGTAGCATGTGATGTGAAAGACTTCTTCCTAAGATGCTGGTGAGCCACTGCAGGTCAGAGTAGACAATACTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCATGATAGGCCAGTGATCTGGCTCAGTACAAGGTTGCTTCATGTGCTCACATGTTTATTATAGAATGAGGATATTTCACATCAAATATATTTATAGTATTCCATGAAGTTTAAAAATACAAGTTC-ATCTACATT----ACTAACACAAATTACTTCTATAAGAATACCAAGACCCAAATCAC--AAAAAAATTGAAAGGATTGTAAGAAGCCCATGGTTGTCACCTATCAAGCTTGCATGGCAGAGTGGGGATTCAAACCCAGTTGCCCCAGGTC-CTATTCTGATACTCTTAACTACTGGGTAACTCTGGCTTTCATCTGTATCTCTCATATTTGTACTGG-CACTGTTTCTCCAGTCACTCT-CCTCCAGACCCTGGGAGTTCT-----------------------CCCCCCCC---TGACTCTCGTGCACCCTAAAAACA-TTTTTCAAGCCATGTTGAATCAGCAGCTCAAGGGGGAGATGGTATCAGTTCTCTAAAAGTGTTCCTACTGATTTCCTTCATGGCCTCAGTCTCATATGTCATACTATGAATTTCTGGGTTTGTCTCTGCAGCTGAGCGTGAAATTGTCCG Homonota_andicola_LJAMMCNP_12494 GGTGGTCAGTATTTCTTAAACCTCAGGCTTGCAGTCTCAAGATGTCATTAATTGAATAAAATAATGGCCT--------------------TGGCACTG----CAATATCGAACAACATTGAACCTATCTCACCTTACAACTTGAGCTGCATGT------------AAGGTCTGTTGCTC------AGAACACTGCATTGTATGTAGAAAGCCCCAAGCTTAACTCCTGACATCTCTGGGCCAAAGGATCTAGGTAGCATGTGATGTGAAAGACTTCTTCCTAAGATGCTGGTGAGCCACTGCAGGTCAGAGTAGACAATACTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCATGATAGGCCAGTGATCTGGCTCAGTACAAGGTTGCTTCATGTGCTCACATGTTTATTATAGAATGAGGATATTTCACATCAAATATATTTATAGTATTCCATGAAGTTTAAAAATACAAGTTC-ATCTACATT----ACTAACACAAATTACTTCTATAAGAATACCAAGACCCAAATCAC--AAAAAAATTGAAAGGATTGTAAGAAGCCCATGGTTGTCACCTATCAAGCTTGCATGGCAGAGTGGGGATTCAAACCCAGTTGCCCCAGGTC-CTATTCTGATACTCTTAACTACTGGGTAACTCTGGCTTTCATCTGTATCTCTCATATTTGTACTGG-CACTGTTTCTCCAGTCACTCT-CCTCCAGACCCTGGGAGTTCT-----------------------CCCCCCCC---TGACTCTCGTGCACCCTAAAAACA-TTTTTCAAGCCATGTTGAATCAGCAGCTCAAGGGGGAGATGGTATCAGTTCTCTAAAAGTGTTCCTACTGATTTCCTTCATGGCCTCAGTCTCATATGTCATACTATGAATTTCTGGGTTTGTCTCTGCAGCTGAGCGTGAAATTGTCCG Homonota_borellii_LJAMMCNP_12116 GGGGGTCAGTATTTCTTAAACCTCAGGCTTGCAGTCTCAAGATGTCATTAATTGAATAAAATAATGGTCT--------------------TAGCACTG----CAATATCGAACAACATTGAACCTATCTCATCTTACAACTTGAGCTGCATGTATAAATAAAAGGAAGGTCTGTTGCTC------AGAACACTGGATTGTATGTAGAAAGTCCCAAGCTTAACTCCTGACATCTCCAGGCCAAAGGATCTAGGTAGTATGTGATGTGAAAGACTTCTTCCTAAGATGCTGGTGAGCCACTGCAGGTGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCATGATAGGCCAGTGATCTGGCTCAGTACAAGGTAGCTTCATGTGCTCACATGTTTATTATAGAATGAGGATATTTCACATCAAATATATTTATAGTATTCCATGAAGTTTAAAAATACAAGTTC-ATCTACATT----ACTAACACAAATTACTTCTATAAGAATACTAACACCCAAATCACAAAAAAAAATTGAAAGGATTTTAAGAAGCCCATGGTTGTCACCTATCAAGTTTGCATGGCAGAGTGGGGATTCAAACCCAGTTGTCCCAGGTC-CTATTCTGATACTTTTAACTACTGGGTAACACTGGCTTTCGTCTGCATTTCTCAAATTTGTACGGG-CACTGTTTCTCCAGTCACTCT-CCCCCAGACCCTGGGAGTTCT----------------------CCCCCCCCC---CGACTCTCATGCACCCTAAAAACA-TTTTTCAAGCCATGTTGAATCAGCAGCTCAAGGGGAAAATGTTATCAGTTCTCTAAAAGTGTTCCTACTGATTTCCTTCGTGGCCTCAGTCTCATATGTCATACTATGAATTTCTTGGTTTGTCTCTGCAGCTGAGCGTGAAATTGTCCG Homonota_borellii_LJAMMCNP_12125 GGGGGTCAGTATTTCTTAAACCTCAGGCTTGCAGTCTCAAGATGTCATTAATTGAATAAAATAATGGTCT--------------------TAGCACTG----CAATATCGAACAACATTGAACCTATCTCATCTTACAACTTGAGCTGCATGTATAAATAAAAGGAAGGTCTGTTGCTC------AGAACCCTGGATTGTATGTAGAAAGTCCCAAGCTTAACTCCTGACATCTCCAGGCCAAAGGATCTAGGTAGTATGTGATGTGAAAGACTTCTTCCTAAGATGCTGGTGAGCCACTGCAGGTGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCATGATAGGCCAGTGATCTGGCTCAGTACAAGGTAGCTTCATGTGCTCACATGTTTATTATAGAATGAGGATATTTCACATCAAATATATTTATAGTATTCCATGAAGTTTAAAAATACAAGTTC-ATCTACATT----ACTAACACAAATTACTTCTATAAGAATACTAACACCCAAATCACAAAAAAAAATTGAAAGGATTGTAAGAAGCCCATGGTTGTCACCTATCAAGTTTGCATGGCAGAGTGGGGATTCAAACCCAGTTGTCCCAGGTC-CTATTCTGATACTCTTAACTACTGGGTAACACTGGCTTTCGTCTGCATTTCTCATATTTGTACTGG-CACTGTTTCTCCAGTCACTCT-CCCCCAGACCCTGGGAGTTCT----------------------CCCCCCCCC---CGACTCTCATGCACCCTAAAAACA-TTTTTCAAGCCATGTTGAATCAGCAGCTCAAGGGGAAAATGTTATCAGTTCTCTAAAAGTGTTCCTACTGATTTCCTTCGTGGCCTCAGTCTCATATGTCATACTATGAATTTCTTGGTTTGTCTCTGCAGCTGAGCGTGAAATTGTCCG Homonota_darwinii_LJAMMCNP_11424 GGCGGTCAGTATTTCTTAAACCTCAGGCTTGCAGTCTCAAGATGTCATTAATTGAATAAAATAATGGCCT--------------------TAGCACTG----CAATATCGAACAACACTGAACCTATCTCATCTTACAACTTGAGCTGCATGTATAAATAAAAAGAAGGTCTGTTGCTC------AGAACACTGCATTGTATGTAGAAAGCCCCAAGCTTCACTCCTGACATCTCCAGGCCAAAGGATCTAGGTAGTATGTGATGTGAATAACTTCTTCCTAAGATGCTGGTGAGCCACTGCAGGTCAGAGTAGACAATACTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCATGATAGGCCAGTGATCTGGCTCAGTACATGGTAGCTTCATGTGCTCACATGTTTATTATAGAATGGGGGTATTTCACATCAAATGTATTTATAGTATTCCATGAAGTTTAAAAATACAAGTTC-ATCTACATT----ACTAACACAAATTACTTCTATAAGAATACCAAGACCCAAATCAC--AAAAAAATTGAAAGGATTGTAAGAAGCCCATGGTTGTCACCTATCAAGCTTGCATGGCAGAGTGGGGATTCAAACCCAGTTGTCCCAGGTC-CTATTCTGATACTCTTAACTACTGGGTAACTCTGGCTTTCATCTGTATCTCTCATATTTGTACTGG-ACCTGTTTCTCCAGTCACTCT-CCCCCAGACCCTGGGAGTTCT----------------------CCCCCTCCC---CGACTCTCGTGAACCCTAAAAACA-TTTTTCAAGCCATGTTGAATCAGCAGTTCAAGGGGAAGATGGTATCAGTTCTCTAAAAGTGTTCCTACTGATTTCCTTCATGGCCTCAGTCTCATATGTCATACTATGAATTTCTGGGTTTGTCTCTGCAGCTGAGCGTGAAATTGTCCG Homonota_darwinii_LJAMMCNP_9266 GGCGGTCAGTATTTCTTAAACCTCAGGCTTGCAGTCTCAAGATGTCATTAATTGAATAAAATAATGGCCT--------------------TAGCACTG----CAATATCGAACAACACTGAACCTATCTCATCTTACAACTTGAGCTGCATGTATAAATAAAAAGAAGGTCTGTTGCTC------AGAACACTGCATTGTATGTAGAAAGCCCCAAGCTTCACTCCTGACATCTCCAGGCCAAAGGATCTAGGTAGTATGTGATGTGAATAACTTCTTCCTAAGATGCTGGTGAGCCACTGCAGGTCAGAGTAGACAATACTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCATGATAGGCCAGTGATCTGGCTCAGTACATGGTAGCTTCATGTGCTCACATGTTTATTATAGAATGGGGGTATTTCACATCAAATGTATTTATAGTATTCCATGAAGTTTAAAAATACAAGTTC-ATCTACATT----ACTAACACAAATTACTTCTATAAGAATACCAAGACCCAAATCAC--AAAAAAATTGAAAGGATTGTAAGAAGCCCATGGTTGTCACCTATCAAGCTTGCATGGCAGAGTGGGGATTCAAACCCAGTTGTCCCAGGTC-CTATTCTGATACTCTTAACTACTGGGTAACTCTGGCTTTCATCTGTATCTCTCATATTTGTACTGG-ACCTGTTTCTCCAGTCACTCT-CCCCCAGACCCTGGGAGTTCT----------------------CCCCCTCCC---CGACTCTCGTGAACCCTAAAAACA-TTTTTCAAGCCATGTTGAATCAGCAGTTCAAGGGGAAGATGGTATCAGTTCTCTAAAAGTGTTCCTACTGATTTCCTTCATGGCCTCAGTCTCATATGTCATACTATGAATTTCTGGGTTTGTCTCTGCAGCTGAGCGTGAAATTGTCCG Homonota_spa_LJAMMCNP_10505 GGAGGTCAGTATTTCTTAAACCTCAGGGTTGCAGTCTCAAGATGTAATTAATTGAATAAAATAATGGTCT--------------------TRGCACTG----CAATATCAAACAACATTGAACCTATCTCATCTTACAACTTGAGCTGCGTGTATAAATAAAAAGAAGGTCTTTTGCTC------AGAACACTGGATTGTATGTAGAAAGCCCCAAGCTTAACTCCTGACATCTCCAGGCCAAAGGATCTAGGTAGTATGTGATGTGAAAGACTTCTTCCTAAGTTGCTGGTGAGCCACTGCAGGTCAGAGTAGACAATACTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCATRATTGGCCAGTGACCTGGCTCAGTACAAGGTTGCTTCATGTGCTCACATGTTTATTATAGAATGGGGATATTTCACATCAAATATATTTATAGTATTCCATGAAGTTTAAAAATACAAGTTC-ATCTACATT----ACTAACACAAATTACTTCTATAAGAATACTAAGACCCAAATCAC---AAAATTTTGAAAGGATTGTAAGAAGCCCATGGCTGTCACCTATCAAGCTTGCATGGCAGAGTGGGGATTCAAACCCAGTTGTCCCAGGTC------CTGATACTCTTAACTACTGGGTAACTCTGGCTTTCATTTGTATCTCTCATATTTGTACTGA-CACTGTTTCTCCAGTCACTCT-CCCCCAGACCCTGGGGGT--------------------------CCCCCCCC---CGACTCTCATGCACCCTAAAAACC-TTTTTCAAGGCATGTTGAATCAGCAGCTCAAGGGGAAGATGGTATTAGTTCTCTAAAAGTGTTCCTACTGGTTTCCTTCATGGCCTCAGTCTCATATGTCATACTATGAATTTCTGGGTTTGTCTCTGCAGCTGAGCGTGAAATTGTCCG Homonota_spa_LJAMMCNP_10528 GGTGGTCAGTATTTCTTAAACCTCAGGGTTGCAGTCTCAAGATGTAATTAATTGAATAAAATAATGGTCT--------------------TGGCACTG----CAATATCAAACAACATTGAACCCATCTCATCTTACAACTTGAGCTGCATGTATAAATAAAAAGCAGGTCTTTTGCTC------AGAACACTGGATTGTATGTAGAAAGCCCCAAGCTTAACTCCTGACATCTCCTGGCCAAAGGATCTAGGT---ATGTGATGTGAAAGACTTCTTCCTAAGTTGCTGGTGAGCCACTGCAGGTCAGAGTAGACAATACTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCATAATTGGCCAGTGACCTGGCTCAGTATATGGTTGCTTCATGTGCTCACATGTTTATTATAGAATGGGGATATTTCACATCAAATATATTTATAGTATTCCATGAAGTTTAAAAATACAAGTTC-ATCTACATT----ACTAACACAAATTACTTCTATAAGAATACTAAGACCCAAATCAC---AAAATTTTGAAAGGATTGTAAGAAGCCCATGGCTGTCACCTATCAAGCTTGCATGGCAGAGTGGGGATTCAAACCCAGTTGTCCCAGGTC------CTGATACTCTTAACTACTGGGTAACTCTGGCTTTCATCTGTATCTCTCATATTTGTACTGG-CACTGTTTCTCCAGTCGCTCT-CCCCCAGACCCTGGGGGT--------------------------CCCCCCCC---CGACTCTCGTGCACCCTAAAAACC-TTTTTCAAGGCATGTGGAATTAGCAGCTCAAGGGGAAGATGGTATCAGTTCTCTAAAAGTGTTCCTACTGATTTCCTTCATGGCCTCAGTCTCATATGTCATACTATGAATTTCTGGGTTTGTCTCTGCAGCTGAGCGTGAAATTGTCCG Homonota_spb_MNHNP_11406 GGTGGTCAGTATTTCTTAAACCTCAGGGTTGCAGTCTCAAGATGTAATTAATTGAATAAAATAATGGTCC--------------------T-GCACTG----CAATATCAAACAACATTGAACCTATCTCATCTTACAACTTGAGCTGCGTGTATAAATAAAAAGAAGGTCTTTTGCTC------AGAACACTGGATTGTATGTAGAAAGCCCCAAGCTTAACTCCTGACATCTCCAGGCCAAAGGATCTAGGTAGTATGTGATGTGAAAGACTTCTTCCTAAGTTGCTGGTGAGCCACTGCAGGTCAGAGTAGACAATACTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCATGATAGGCCAGTAATCTGGCTCAGTACAAGGTTGCTTCATGTGCTCACATGTTTATTATAGAATGGGGATATTTCACATCAAATATATTTATAGTATTCCATGAAGTTTAAAAATACAAGTTC-ATCTACATT----ACTAACACAAATTACTTCTATAAGAATACTAAGACCTAAATCAC---AAAAAATTGAAAGGAGTGTAAGAAGCCCATGGCTGTCACCTATCAAGCTTGCATGGCAGAGTGGAGATTTAAACCCAGTTGTCCCAGGTC------CTGATACTCTTAACTACTGGGTAACTCTGGCTTTCATTTGTATCTCTCATATTTGTACTGA-CACTGTTTCTCCAGTCACTCT-YTCCCAGACCCTGGGGGT--------------------------CCCCCCCC---CGACTCTCATGCATCCTAAAAACC-TTTTTCAAGGCATGTTGAATTAGCAGCTCAAGGGGAAGATGGTATCAGTTCTCTAAAACTGTTCCTACTGGTTTCCTTCATGGCCTCAGTCTCATATGTCATACTATGAATTTCTGGGTTTGTCTCTGCAGCTGAGCGTGAAATTGTCCG Homonota_spb_MNHNP_11409 GGTGGTCAGTATTTCTTAAACCTCAGGGTTGCAGTCTCAAGATGTAATTAATTGAATAAAATAATGGTCC--------------------T-GCACTG----CAATATCAAACAACATTGAACCTATCTCATCTTACAACTTGAGCTGCGTGTATAAATAAAAAGAAGGTCTTTTGCTC------AGAACACTGGATTGTATGTAGAAAGCCCCAAGCTTAACTCCTGACATCTCCAGGCCAAAGGATCTAGGTAGTATGTGATGTGAAAGACTTCTTCCTAAGTTGCTGGTGAGCCACTGCAGGTCAGAGTAGACAATACTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCATGATAGGCCAGTAATCTGGCTCAGTACAAGGTTGCTTCATGTGCTCACATGTTTATTATAGAATGGGGATATTTCACATCAAATATATTTATAGTATTCCATGAAGTTTAAAAATACAAGTTC-ATCTACATT----ACTAACACAAATTACTTCTATAAGAATACTAAGACCTAAATCAC---AAAAAATTGAAAGGAGTGTAAGAAGCCCATGGCTGTCACCTATCAAGATTGCATGGCAGAGTGGGGATTTAAACCCAGTTGTCCCAGGTC------CTGATATTCTTAACTACTGGGTAACTCTGGCTTTCATTTGTATCTCTCATATTTGTACTGA-CACTGTTTCTCCAGTCACTCT-CCCCCAGACCCTGGGGGT--------------------------CCCCCCCC---CGACTCTCATGCATCCTAAAAACM-TTTTTCAAGSCATGTTGAATTAGCAGCTCAAGGGGAAGATGGTATCAGTTCTCTAAAACTGTTCCTACTGGTTTCCTTCATGGCCTCAGTCTCATATGTCATACTATGAATTTCTGGGTTTGTCTCTGCAGCTGAGCGTGAAATTGTCCG Homonota_taragui_LJAMMCNP_14419 GGGGGTCAGTATTTCTTAAACCTCAGGCTTGCAGTCTCAAGATGTCATTAATTGAATAAAATAATGGTCT--------------------TAGCACTG----CAATATCGAACAACATTGAACCTATCTCATCTTACAACTTGAGCTGCATGTATAAATAAAAGGAAGGTCTGTTGCTC------AGAACACTGGATTGTATGTAGAAAGTCCCAAGCTTAACTCCTGACATCTCCAGGCCAAAGGATCTAGGTAGTATGTGATGTGAAAGACTTCTTCCTAAGATGCTGGTGAGCCACTGCAGGTGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCATGATAGGCCAGTGATCTGGCTCAGTACAAGGTAGCTTCATGTGCTCACATGTTTATTACAGAATGAGGATATTTCACATCAAATATATTTATAGTATTCCATGAAGTTTAAAAATACAAGTTC-ATCTACATT----ACTAACACAAATTACTTCTATAAGAATACTAACACCCAAATCAC-AAAAAAAATTGAAAGGATTTTAAGAAGCCCATGGTTGTCACCTATCAAGTTTGCATGGCAGAGTGGGGATTCAAACCCAGTTGTCCCAGGTC-CTATTCTGATACTCTTAACTACTGGGTAACACTGGCTTTCGTCTGCATTTCTCATATTTGTACTGG-CACTGTTTCTCCAGTCACTCT-CCCCCAGACCCTGGGAGTTCT----------------------CCCCCCCCCCCACAACTCTCATGCACCCTAAAAACA-TTTTTCAAGCCATGTTGAATCAGCAGCTCAAGGGGAAAATGTTATCAGTTCTCTAAAAGTGTTCCTACTGATTTCCTTCGTGGCCTCAGTCTCATATGTCATACTATGAATTTCTTGGTTTGTCTCTGCAGCTGAGCGTGAAATTGTCCG Homonota_taragui_LJAMMCNP_14420 GGGGGTCAGTATTTCTTAAACCTCAGGCTTGCAGTCTCAAGATGTCATTAATTGAATAAAATAATGGTCT--------------------TAGCACTG----CAATATCGAACAACATTGAACCTATCTCATCTTACAACTTGAGCTGCATGTATAAATAAAAGGAAGGTCTGTTGCTC------AGAACACTGGATTGTATGTAGAAAGTCCCAAGCTTAACTCCTGACATCTCCAGGCCAAAGGATCTAGGTAGTATGTGATGTGAAAGACTTCTTCCTAAGATGCTGGTGAGCCACTGCAGGTGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCATGATAGGCCAGTGATCTGGCTCAGTACAAGGTAGCTTCATGTGCTCACATGTTTATTACAGAATGAGGATATTTCACATCAAATATATTTATAGTATTCCATGAAGTTTAAAAATACAAGTTC-ATCTACATT----ACTAACACAAATTACTTCTATAAGAATACTAACACCCAAATCAC-AAAAAAAATTGAAAGGATTTTAAGAAGCCCATGGTTGTCACCTATCAAGTTTGCATGGCAGAGTGGGGATTCAAACCCAGTTGTCCCAGGTC-CTATTCTGATACTCTTAACTACTGGGTAACACTGGCTTTCGTCTGCATTTCTCATATTTGTACTGG-CACTGTTTCTCCAGTCACTCT-CCCCCAGACCCTGGGAGTTCT----------------------CCCCCCCCCCCACAACTCTCATGCACCCTAAAAACA-TTTTTCAAGCCATGTTGAATCAGCAGCTCAAGGGGAAAATGTTATCAGTTCTCTAAAAGTGTTCCTACTGATTTCCTTCGTGGCCTCAGTCTCATATGTCATACTATGAATTTCTTGGTTTGTCTCTGCAGCTGAGCGTGAAATTGTCCG Homonota_underwoodi_LJAMMCNP_10923 GGAGGTCAGTATTTCTTAAACCTCAGGGTTGCAGTCTCAAGATGTCATTAGTTGAATAAAATAATGGTCT--------------------TAGCACTG----CAATATCGAACAACATTGAACCTATCTCATCTTACAACTTGAGCTGCGTGTATAAATAAAAAGAAGGTCTGTTGCTC------AGAACACTGGATTGTATGTAGAAAGCCCCAAGCTTCTCTCCTGACATCTCCAGGCCGAAGGATCTAGGTAGTATGTGATGTGAAAGACTTCTTCCTAAGACGCTGGTGAGCCACTGCAGGTCAGAGTAGACAATACTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCCATGATAGGCCAGGGATCTGGCTCAGTACAAGGTAGCTTCATGTGCTCACATGTTTGTTATAGAACGGGGATATTTCACATCAAATATATTTAAAGTATTCCATGAAGTTTAAAAATACAAGCTC-ATCTACATT----ACCAACACAAATTACTTCTATAAGAATACCAAGACCCAAATCAC---AAAAAATTGAAAGGATTGTAAGAAGCCCATGGCTGTCACCTATCAAGCTTGCATGGCAGAGTGGGGGTTCAAGCCCAGTTGTCCCAGGTC-CTATTCTGATACTCTTAACTACTGGGTAACTCTGGCTTTCATCTGTATCTCTGATATTTGTACTGG-CACTGTTTCTCCTGTCACTCT-CCCCCAGACCCTGGGGGT-----------------------------CCCCA---TGACTCTCATGCACCCTAAAAACC-TTTTTCAAGGCATGTTGAATCAGCAGCTCAAGGGGAAGATGGTATCGGTTCTCTAAAAGTGTCCCTACTGATTTCCTTCATGGCCTCAGTCTCATATGTCATACTATGAATTTCTGGGTTTGTCTCTGCAGCTGAGCGTGAAATTGTCCG Homonota_whitii_LJAMMCNP_12110 GGTGGTCAGTATTTCTTAAACCTCAGGCTTGCAGTCTCAAGATGTCATTAATTGAATAAAATAATGGCCT--------------------TGGCACTG----CAATATCGAACAACATTGAACCTATCTCACCTTACAACTTGAGCTGCATGT------------AAGGTCTGTTGCCC------AGAACACTGCATTGTATGTAGAAAGCCCCAAGCTTAACTCCTGACATCTCTGGGCCAAAGGATCTAGGTAGCATGTGATGTGAAAGACTTCTTCCTAAGATGCTGGTGAGCCACTGCAGGTCAGAGTAGACAATACTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCATGATAGGCCAGTGATCTGGCTCAGTACAAGGTTGCTTCATGTGCTCACATGTTTATTATAGAATGAGGATATTTCACATCAAATATATTTATAGTATTCCATGAAGTTTAAAAATACAAGTTC-ATCTACATT----ACTAACACAAATTACTTCTATAAGAATACCAAGACCCAAATCAC--AAAAAAATTGAAAGGATTGTAAGAAGCCCATGGTTGTCACCTATCAAGCTTGCATGGCAGAGTGGGGATTCAAACCCAGTTGCCCCAGGTC-CTATTCTGATACTCTTAACTACTGGGTAACTCTGGCTTTCATCTGTATCTCTCATATTTGTACTGG-CACTGTTTCTCCAGTCACTCT-CCTCCAGACCCTGGGAGTTCT------------------------CCCCCCC---TGACTCTCGTGCACCCTAAAAACA-TTTTTCAAGCCATGTTGAATCAGCAGCTCAAGGGGGAGATGGTATCAGTTCTCTAAAAGTGTTCCTACTGATTTCCTTCATGGCCTCAGTCTCATATGTCATACTATGAATTTCTGGGTTTGTCTCTGCAGCTGAGCGTGAAATTGTCCG Homonota_whitii_LJAMMCNP_12111 GGTGGTCAGTATTTCTTAAACCTCAGGCTTGCAGTCTCAAGATGTCATTAATTGAATAAAATAATGGCCT--------------------TGGCACTG----CAATATCGAACAACATTGAACCTATCTCACCTTACAACTTGAGCTGCATGT------------AAGGTCTGTTGCCC------AGAACACTGCATTGTATGTAGAAAGCCCCAAGCTTAACTCCTGACATCTCTGGGCCAAAGGATCTAGGTAGCATGTGATGTGAAAGACTTCTTCCTAAGATGCTGGTGAGCCACTGCAGGTCAGAGTAGACAATACTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCATGATAGGCCAGTGATCTGGCTCAGTACAAGGTTGCTTCATGTGCTCACATGTTTATTATAGAATGAGGATATTTCACATCAAATATATTTATAGTATTCCATGAAGTTTAAAAATACAAGTTC-ATCTACATT----ACTAACACAAATTACTTCTATAAGAATACCAAGACCCAAATCAC--AAAAAAATTGAAAGGATTGTAAGAAGCCCATGGTTGTCACCTATCAAGCTTGCATGGCAGAGTGGGGATTCAAACCCAGTTGCCCCAGGTC-CTATTCTGATACTCTTAACTACTGGGTAACTCTGGCTTTCATCTGTATCTCTCATATTTGTACTGG-CACTGTTTCTCCAGTCACTCT-CCTCCAGACCCTGGGAGTTCT------------------------CCCCCCC---YGACTCTCGTGCACCCTAAAAACA-TTTTTCAAGCCATGTTGAATCAGCAGCTCAAGGGGGAGATGGTATCAGTTCTCTAAAAGTGTTCCTACTGATTTCCTTCATGGCCTCAGTCTCATATGTCATACTATGAATTTCTGGGTTTGTCTCTGCAGCTGAGCGTGAAATTGTCCG Homonota_williamsii_LJAMMCNP_4467 ?????????????????????????????????????????????CATTAATTGAATAAAATAATGGCCT--------------------GAGCACTG----CAATATCGAACAACACTGAACCTATCTCATCTTACAACTTGAGCTGCATGTATAAATAAAAAGAAGGTCTGTTGCTC------AGAACACTGCATTGTATGTAGAAAGCCCCAAGCTTCACTCCTGACATCTCCGGGCCAAAGGATCTAGGTAGTATGTGATGTGAAAGACTTCTTCCTAAGATGCTGGTAAGCCACTGCAGGTCAGAGTAGACAATACTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCATGATAGGCCAGTGATCTGGCTCAGTACAAGGTTGCTTCATGTGCTCACATGTTTATTATAGAATGGGGATATTTCACATCAAATGTATTTATAGTATTCCATGAAGTTTAAAAATACAAGTTC-ATCTACATT----ACTAACACAAATTACTTTTATAAGAATACCAAGACCCAAATCAC--ACAAAAATTGAAAGGATTGTAAGAAGCCCATGGTTGTCACCTATCAAGCTTGCATGGCAGAGTGGGGATTCAAACCCAGTTGTCCCAGGTC-CTATTCTGATACTCTTAACTACTGGGTAACTCTGGCTTTCATCTGTATCTCTCATATTTGTACTGG-CACTGTTTCTCCAGTCACTCT-CCCCCAGACCCTGGGAGTTCT----------------------CCCCCTCCC---CGACTCTCGTGCACCCTAAAAACA-TTTTTCAAGCCATGTTGAATCAGCAGCTCAAGGGGGAGATGGTATCAGTTCTCTAAAAGTGTTCCTACTGATTTCCTTCATGGCCTCAGTCTCATATGTCATACTATGAATTTCTGGGTTTGTCTCTGCAGCTGAGCGTGAAATTGTCCG Homonota_williamsii_LJAMMCNP_6517 ?GTGGTCAGTATTTCTTAAACCTCAGGCTTGCAGTCTCAAGATGTCATTAATTGAATAAAATAATGGCCT--------------------GAGCACTG----CAATATCGAACAACAYTGAACCTATCTCATCTTACAACTTGAGCTGCATGTATAAATAAAAAGAAGGTCTGTTGCTC------AGAACACTGSATTGTATGTAGAAAGCCCCAAGCTTSACTCCTGACATCTCCGGGCCAAAGGATCTAGGTAGTATGTGATGTGAAAGACTTCTTCCTAAGATGCTGGTRAGCCACTGCAGGTCAGAGTAGACAATACTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCATGATAGGCCAGTGATCTGGCTCAGTACAAGGTTGCTTCATGTGCTCACATGTTTATTATAGAATGGGGATATTTCACATCAAATGTATTTATAGTATTCCATGAAGTTTAAAAATACAAGTTC-ATCTACATT----ACTAACACAAATTACTTTTATAAGAATACCAAGACCCAAATCAC--AMAAAAATTGAAAGGATTGTAAGAAGCCCATGGTTGTCACCTATCAAGCTTGCATGGCAGAGTGGGGATTCAAACCCAGTTGTCCCAGGTC-CTATTCTGATACTCTTAACTACTGGGTAACTCTGGCTTTCATCTGTATCTCTCATATTTGTACTGG-CACTGTTTCTCCAGTCACTCT-CCCCCAGACCCTGGGAGTTCT----------------------CCCCCTCCC---CGACTCTCGTGCACCCTAAAAACA-TTTTTCAAGCCATGTTGAATCAGCAGCTCAAGGGGRAGATGGTATCAGTTCTCTAAAAGTGTTCCTACTGATTTCCTTCATGGCCTCAGTCTCATATGTCATACTATGAATTTCTGGGTTTGTCTCTGCAGCTGAGCGTGAAATTGTCCG Homonota_uruguayensis_UFRGS_1568 GGAGGTCAGTATTTCTTAAACCTCAGGCTTGCAGTCTCAAGATGTCATTAATTGAATAAAATAATGGTCT--------------------TAGCAATG----CAATATCGAACAACATTAAACCTATCTCATTTTACAACTTGAGCTGCATGTATAAATAAAAAGAAGGTCTGTTGCTC------AGAACACTGCATTGTATGTAGAAAGTCCCAAGCTTAACTCCTGACATCTCCAGGCCAAAGGATCTAGGTAGTATGTGATGTGAAAGACTTCTTCCTAAGATGCTGGTGAGGCACT-CAGGTCAGAGTAGACAATACTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCATGATAGGCCAGTGACCTGACTCAGTACAAGGTAGCTTCATGTGCTCACATGTTTATTATAGAATGGGGATATTTCTCATCAAATATATTTTTAGTATTCCATGAAGTTTAAAAATACAAGTTC-ATCTCCATT----ATAAACACAAATTA??????????????????????????????-???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????-?????????????????????-??????????????????-------------------------CCCCCCCCC---CGACTCTCATGCACCCTAAAAACA-TTTTTCAAGCCATGTTGAATCAGCAGCTCAAGGGGAAGATGGTATCAGTTCTCTAAAAGTGTTCCTACTGATTTCCTTCATGGCCTCAGTCTCATATGACATACTATGAATTTCTTGGTTTGTCTCTGCAGCTGAGCGTGAAATTGTCCG Garthia_gaudichaudi_IBEG1_1 GGTGGTCAATATTTC-TAAACCTCAGTAATGCAGTCTAAAGATGTCATTAGTTGACTAAAATAATGGTCTGTGGTATACATA--------TGGCACTG----AAATATTGAACACTA-AATAACTATCTCATCTTACAAAGTCATTTGCTTGTATAAATAAAAAGAGGGTCTGGAGCTTARTGGTAGAACATTGCATTGAATGTAGAAAGTCCCAAGTTTAACTCCTGACAATTCCAGGCAAAAGGATCAAGGTAGTATGTGATGTGAAAGACTTCTTCCTAAGATGCTGGTGAGCCACTGCAGGTCAGAGTAGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATGATAGACCTATGAACTGATTCTGTATAAGGTAACTTCATGTGCTCATCTGTTTATTATATAACAAGTATATTTCACATCAAATATATTTATAGTATTTCATGAAGTTTAAAAATACAAGTTCCATCTACATT----AATAACACAAATTACTTTTATAAGAATACTAATACCCAAATCAC----AAAAATTGAAAGGATTGTAAGAGGCCCATGGTTGTCACCTATCATGCCTGCATGGCAGAGTGGGGATTCAAACCCAGTTGTCCCAGATC-CTACTCTGAGATTCTTAACTACTGTGTAACACTGGCTTTCATCCGTATCTCCC--ATTTGTATGGG-CCCTGCTTCTCCAATCACTCT-CCCCCAGACCCTGGGAAGGATCTCTGGGAATC-----------CCTCACCCC---TGATTCTCATGCACCCTAAAAACC-ATTTTCAGGGCATGTTGAATCAGCTGCTCAAGTAAAAGATGGTATCAGTTCTCTAAAAGTGTTCCTACTCTTTTCCTTCATGGCCTCAGTCTCCTTTGTCATGCTATGAATTTCTGGGTTTATCTCTG?????????????????????? Phyllopezus_przewalskii_LJAMMCNP_12089 GGTGGTCAGTATTTC-TAAACCTCAGGGATGCTGTCTAAAGATGTCATTAGTTGACTAAAATAATGGTCTGTGGTATACATATGCAGACTTCACACTG----AAATATTGAACACTA-AATACCTATCTCATTTTACAAATTCAGCTACGTGTATAAATAAAAAGAGGGTCTGTAGCTCAGTGGTAGAACATTGCATTGTATGTAGAAAGTCCCAGGTTTAACTTCTGACATCTCTAGGCAAAAGGGTCAAGGCAGTATGTGAAGTGAAAGACTTCTTCCTATGATGCTGGTGAGCCACTGCAGGTCAGAGCAGACAATACTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCATAATAGACCAATGATCTGACTCAGTATAAGGTAGCTTCATGTGCTCATCTGTTTATTATAAAACAAGCACATTTCACATCAAATAGATTTATAGTATTTCATGAAGTTTAAAAATACAAGTTC-ATCTGCATT----ACAAACACAAATTACTTTTATAAG----------------TCAC---AAAAATTTGAAAGGATTGTAAGAGGCCTATGGTTGTCACCTATCAAGCTTGCATGGCAGAGTGGGGATTCAAACCCAGTCATCCCAGCTA-CTACTCTGAGACTCTTAACTACTGTGTAACACTGGCTTTCATCTGTACCTCTCATATTTGTACTGG-CCCTGCTTCTCCAATTACTCT-CCCCCAGACCCTGGGAATGATCTCTGGGAGT------------CCCTCCCCC---TGACTCTCATCCACCCTAAAAACC-TTTTTCAGGGCATGTTGAATCAGCAGCTCAAGGGGAAGGTGGTATCAGTTCTCTAAAAGTGTTCCTACTGATTTCTTTCATGGCCTCAGTTTCCTTTGTCATGCTATGAATTTCTGGGTTTTTCTCTGCAGCTGAACGTGAAATTGTCCG Phyllopezus_pollicaris_CHUNB_57388 GGTGGTCAGTATTTC-TAAACCTCAGGGATGCCGTCTAAAGATGTCATTTGTTGGCTAAAATAATGGTCTGTGGTATACATATGCAGACTTCACACTG----AAATATTGAACACTA-AATACCTATCT-------CAAATTCAGCTACGTGTRTAAATAAAAAGAGGGTCTGTAGCTCAGTGGTAGAACATTGCATTGTATGTAGAAAGTCCCAGGTTTAACTCCTGACATCTCTAGGCAAAAGGGTCAAGGTAGTATGTGAAGTGAAAGACTTCTTCCTAAGATGCTGGTGAGCCACTGCAGGTCAGAGCAGACAATACTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCATAATAGACCAATGATCTGACTCAGTATAAGGTAGCTTCATGTGTTCATCTGTTTATTATAAAACAAGTACATTTCACATCAAATAGATTTATAGTATTTCATGAAGTTTAAAAATACAAGTTC-ATCTGCATTACAAACAAACACAAATAACTTTTATAAG----------------TCAC---AAAAATTTGAAAGA-TTGTAAGAGGCCTATGGTTGTCACCTATCAAGCTTGCATGGCA-------GATTCAAACCCAGTCATCCCAGGTA-CTACTCTGAGACTCTTAACTACTGTGTAACACTGGCTTTCATCTGTACCTCTCATATTTGTACTGG-CCCTTCTTCTCCAATCACTCT-CCCCCAGACCCTGGGAATGATCTTTGGGAGT------------CCCTCCCCC---TGACTCTCATCCACCCTAAAAACT-TTTTTCAGGGCATGTTGAATCAGCAGCTCAAGGGGAAGGTAGTATCAGTTCTCTAAAAGTGTTCCTACTTATTTCTTTCATGGCCTCGGTTCCCTTTGTCATGCTATGAATTTCTGGGTTTTTCTCTGCAGCTGAACGTGAAATTGTCCG Phyllodactylus_kofordi_TG_266 GGTGGTCAATATTTC-TAAATCTTAGGGATGCAGCCTAAAGATGTTGTTAACTG-C-AAAATAATGGTAT-------GCATATGCAGACTTAGCACTG----AGATATTGAGCACTA-AATACCTAGCTCATCTTACAAGTTCATCTGCATGTATAAATAAAGAGAAGGTCTGTATCTCAGTGGTAGAAAGTTGGACTGTATGTAGAGAGTCCCAAATTTAACTCCTGGCATCTCCAGGCAAAAGGATCAAAGAAGTATGTGACGTGAAAGACTTCTTCCTCAGATGCTAGTGAGCCATTGCAGGTCAGGAAAGACAATACTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCATGATAGACCAGTGATCTGACTCGGTACAAGGTTGCTTCATGTGCTCATATGTTTATTATAAAACA------TTTCACATCAAATATATTTATAGTATTTCATGAAGTTTAAAAATACAAGTTC-ATCTACAGT----ACTAACACAAATTGCTT-TGTAAGAATGGC-----------------AAAAATGTGAAAGGATTGTAAGAGGCCCATGGTTGTCACCTATCAAGCTTGCATGGCAGAGTGGGGATTCAAACCTAGTTGTCCCAGGTC-CTATTCTGAGACTCTGAACTACTGTGTAACATTGGCTTTCATCTGTATCTCTCATGTTTGCACTGG-CCTTGCTTCTCCAATCACTCTCCCCCCAGATGCTGAGAATGATCTCTGGGAGTTTGTCCCTTCCATCCCCCCAC---TGACTYTCATCCACCCTAGAATCCTTTTTTCAGRGCATCTTGAATTAGCAGCTCAAGGAARGRRTGATATTAGTTCTCTAAAAGTGTTCCTATTGATTTTCTTCATTGCCTCAGTCTCCTTTGTCATGCCATGAATTTCTGGGTTTATCTCTGCAGCGGAACGTGAAATTGTCCG Gymnodactylus_geckoides_LG_1050 GGTGGTCAGTAGTTC-TAAACCTCAGGGATGCTGTCTAAAGATGTTATCAGTTGACTAAAATAATGATCTGTAGTCTACATATGCAGACGTAGCACTGAAATAAATACTGAACACTA-AATAGCTATTTCATTTTACAAATTCAGCTACATGTATAAATAAAAAGAGGATCTGTAGCTCAGTGGCAGAACATTGCATTGTATGTAGAAAGTCC-ATGTTTAACTCCTGACATCTCCAGGCAAAAGGATCAAAGTAGTATGTGAAGTGAAAAAATTCTTCCTAAGATGCTGGTGAGCTACTACAGATCAGAGTAGACAAAACTGACCATGGAGTTTTCCAGACTGGCTTTAATATCCCAATATGTTCATCTGACGTTATCAGTTTCCTCCCTTGTATTCAGACTTAATTGTTAACATTCAGTAGATGTCCTGAATTTTCCTTCTGTTTATTGCATGTTTTTTTAAGGTGCAGGGAAAATCAGTTTATTTAAAACATGCAATAAATGGAAGGAAAACTTGGGACCCTGATTGTATGTTAATGATTATGTCTGAACATGAGGGGGAAACCCAGTAACATTTGGGTGAACATATTGGGATATTAAGCCAGTCTGGAAAACACCCATGATAGATCAGTGATCTGACTCAGTATAAGGTAGCTTGATGTGCTCATCTGTTTATTATAAAACAGGTACATTTCACATCAAATACATTTATAGTATTTCATGAGGCTTAAAAATACAAGTTC-ATCTACATA----ATGAACACAAATTACTTTTATATGAATACTAATACACAAGTCAC--AAAAAATTTGAAAGGATTATAAGAGGCCTATAGTAGTCAC-ATATCAAGTTGTATGGCACAATGGGGATTCAAACCCAGTTGTCCTAGGTC-------------------CTACTGTGTATCACTGATTTCCAACTGTATTTCTCAAATGTGTACTGGTTCCTGTGTCTCCAGTATCCCT-------------GGGAATGATATCTGGGAGT------------CACTCCCTC---TGACTCTCATGCACCCTAAAAAC-----TTTGGGGCATATTGAATCAGCAGCTCAAGGAAAAGGTGGTGTCAGTTGTCTAAAAGTATTCCTACTGATTTCCTTCATGGCCTCAGTCTCTTTTGTCATGCTGTGAATTTCTGGGTTTATTTCTTCAGCTGAACGTGAAATTGTCCG Gymnodactylus_geckoides_LG_911 GGTGGTCAGTAGTTC-TAAACCTCAGGGATGCTGTCTAAAGATGTTATCAGTTGACTAAAATAATGATCTGTAGTCTACATATGCAGACGTAGCACTGAAATAAATACTGAACACTA-AATAGCTATTTCATTTTACAAATTCAGCTACATGTATAAATAAAAAGAGGATCTGTAGCTCAGTGGCAGAACATTGCATTGTATGTAGAAAGTCC-ATGTTTAACTCCTGACATCTCCAGGCAAAAGGATCAAAGTAGTATGTGAAGTGAAAAAATTCTTCCTAAGATGCTGGTGAGCTACTACAGATCAGAGTAGACAAAACTGACCATGGAGTTTTCCAGACTGGCTTTAATATCCCAATATGTTCATCTGACGTTATCAGTTTCCTCCCTTGTATTCAGACTTAATTGTTAACATTCAGTAGATGTCCTGAATTTTCCTTCTGTTTATTGCATGTTTTTTTAAGGTGCAGGGAAAATCAGTTTATTTAAAACATGCAATAAATGGAAGGAAAACTTGGGACCCTGATTGTATGTTAATGATTATGTCTGAACATGAGGGGGAAACCCAGTAACATTTGGGTGAACATATTGGGATATTAAGCCAGTCTGGAAAACACCCATGATAGATCAGTGATCTGACTCAGTATAAGGTAGCTTGATGTGCTCATCTGTTTATTATAAAACAGGTACATTTCACATCAAATACATTTATAGTATTTCATGAGGCTTAAAAATACAAGTTC-ATCTACATA----ATGAACACAAATTACTTTTATATGAATACTAATACACAAGTCAC--AAAAAATTTGAAAGGATTATAAGAGGCCTATAGTAGTCAC-ATATCAAGTTGTATGGCACAATGGGGATTCAAACCCAGTTGTCCTAGGTC-------------------CTACTGTGTATCACTGATTTCCAACTGTATTTCTCAAATGTGTACTGGTTCCTGTGTCTCCAGTATCCCT-------------GGGAATGATATCTGGGAGT------------CACTCCCTC---TGACTCTCATGCACCCTAAAAAC-----TTTGGGGCATATTGAATCAGCAGCTCAAGGAAAAGGTGGTGTCAGTTGTCTAAAAGTATTCCTACTGATTTCCTTCATGGCCTCAGTCTCTTTTGTCATGCTGTGAATTTCTGGGTTTATTTCTTCAGCTGAACGTGAAATTGTCCG ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 1215; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 1215; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 1215; END; BEGIN TREES; Title ACA4_BI; ID 015b66c5a23b34; LINK Taxa = ACA4; TRANSLATE [0] 1 Homonota_andicola_LJAMMCNP_12490, [1] 2 Homonota_andicola_LJAMMCNP_12494, [2] 3 Homonota_borellii_LJAMMCNP_12116, [3] 4 Homonota_borellii_LJAMMCNP_12125, [4] 5 Homonota_darwinii_LJAMMCNP_11424, [5] 6 Homonota_darwinii_LJAMMCNP_9266, [6] 7 Homonota_spa_LJAMMCNP_10505, [7] 8 Homonota_spa_LJAMMCNP_10528, [8] 9 Homonota_spb_MNHNP_11406, [9] 10 Homonota_spb_MNHNP_11409, [10] 11 Homonota_taragui_LJAMMCNP_14419, [11] 12 Homonota_taragui_LJAMMCNP_14420, [12] 13 Homonota_underwoodi_LJAMMCNP_10923, [13] 14 Homonota_whitii_LJAMMCNP_12110, [14] 15 Homonota_whitii_LJAMMCNP_12111, [15] 16 Homonota_williamsii_LJAMMCNP_4467, [16] 17 Homonota_williamsii_LJAMMCNP_6517, [17] 18 Homonota_uruguayensis_UFRGS_1568, [18] 19 Garthia_gaudichaudi_IBEG1_1, [19] 20 Phyllopezus_przewalskii_LJAMMCNP_12089, [20] 21 Phyllopezus_pollicaris_CHUNB_57388, [21] 22 Phyllodactylus_kofordi_TG_266, [22] 23 Gymnodactylus_geckoides_LG_1050, [23] 24 Gymnodactylus_geckoides_LG_911; TREE con_50_majrule = ((22:0.1328585,(19:0.08238587,((20:0.01223948,21:0.02502954):0.04011752,(23:0.001050733,24:0.001006675):0.1522344):0.01691262):0.00867422):0.04933955,((13:0.04049044,((7:0.006778275,8:0.02568722):0.009740639,(9:0.005078917,10:0.00518568):0.01730528):0.01654524):0.007346628,((18:0.03370275,(4:0.003278426,(3:0.007097118,(11:0.001360371,12:0.001431731):0.005225332):0.003303387):0.02387614):0.009776011,((1:0.001420022,2:0.001378263,(14:0.001381611,15:0.001359223):0.00325857):0.01865705,((5:0.001314272,6:0.001411758):0.0208549,(16:0.002253068,17:0.001369628):0.01002572):0.008842656):0.009295165):0.009020528):0.04933955); END; BEGIN TREES; Title ACA4_ML; ID 015b7b7dc39923; LINK Taxa = ACA4; TRANSLATE [0] n0 Homonota_andicola_LJAMMCNP_12490, [1] n1 Homonota_andicola_LJAMMCNP_12494, [2] n2 Homonota_borellii_LJAMMCNP_12116, [3] n3 Homonota_borellii_LJAMMCNP_12125, [4] n4 Homonota_darwinii_LJAMMCNP_11424, [5] n5 Homonota_darwinii_LJAMMCNP_9266, [6] n6 Homonota_spa_LJAMMCNP_10505, [7] n7 Homonota_spa_LJAMMCNP_10528, [8] n8 Homonota_spb_MNHNP_11406, [9] n9 Homonota_spb_MNHNP_11409, [10] n10 Homonota_taragui_LJAMMCNP_14419, [11] n11 Homonota_taragui_LJAMMCNP_14420, [12] n12 Homonota_underwoodi_LJAMMCNP_10923, [13] n13 Homonota_whitii_LJAMMCNP_12110, [14] n14 Homonota_whitii_LJAMMCNP_12111, [15] n15 Homonota_williamsii_LJAMMCNP_4467, [16] n16 Homonota_williamsii_LJAMMCNP_6517, [17] n17 Homonota_uruguayensis_UFRGS_1568, [18] n18 Garthia_gaudichaudi_IBEG1_1, [19] n19 Phyllopezus_przewalskii_LJAMMCNP_12089, [20] n20 Phyllopezus_pollicaris_CHUNB_57388, [21] n21 Phyllodactylus_kofordi_TG_266, [22] n22 Gymnodactylus_geckoides_LG_1050, [23] n23 Gymnodactylus_geckoides_LG_911; TREE tree_1 = ((n18:0.05438982455843626,((((n17:0.021538880085645473,(n3:0.0011938022280828851,(n2:0.0035943108498068693,(n10:0.00000114149384340149,n11:0.00000114149384340149):0.0023905804789008875):0.0011946838086630519):0.0150424111003079):0.005023693038679656,(((n16:0.00000114149384340149,n15:0.00000114149384340149):0.0062377687960533485,(n4:0.00000114149384340149,n5:0.00000114149384340149):0.012762953051674797):0.004727246617141594,((n0:0.00000114149384340149,n1:0.00000114149384340149):0.00000114149384340149,(n13:0.00000114149384340149,n14:0.00000114149384340149):0.0011843024092811599):0.011093565603042503):0.0052909209758710725):0.004607439712241823,(n12:0.02637971643241793,((n8:0.0023797224307185723,n9:0.002385805024370887):0.010216074616487039,(n7:0.016462126840686254,n6:0.0031347130014553358):0.005284036494236496):0.01002372588106503):0.003881430540356499):0.06603194482568359,n21:0.08986853914488434):0.003548127177699255):0.004997276164920543,((n19:0.007008356455008166,n20:0.015709722047841435):0.025605608326598504,(n23:0.00000114149384340149,n22:0.00000114149384340149):0.10221544887373148):0.004997276164920543); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1493021324738; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 4801625369151714089; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 6180782112345378859; mqVersion 320; checksumv 0 3 1358231112 null getNumChars 1215 numChars 1215 getNumTaxa 24 numTaxa 24 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 488699.0 sumSquares -2.767011611056427E19 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 239; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1150 848; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #4801625369151714089 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #4801625369151714089; getWindow; tell It; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 911 776; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.arrow; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #4801625369151714089 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 015b66c5a23b34; toggleUseWeights off; endTell; setAssignedID 4611.1492077882564.8238354659799172401; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 911 776; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.reroot; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; makeTreeWindow #4801625369151714089 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 2; setTreeBlockID 015b7b7dc39923; toggleUseWeights off; endTell; setAssignedID 3040.1492425496246.9055491528415358124; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 911 776; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.reroot; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #6180782112345378859 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 911 776; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;