#NEXUS [written Mon Apr 24 10:09:21 CEST 2017 by Mesquite version 3.2 (build 801) at HG17209/172.30.18.79] BEGIN TAXA; TITLE 12S; DIMENSIONS NTAX=26; TAXLABELS Homonota_andicola_LJAMMCNP_12493 Homonota_andicola_LJAMMCNP_12495 Homonota_borellii_LJAMMCNP_12116 Homonota_borellii_LJAMMCNP_12125 Homonota_darwinii_LJAMMCNP_11424 Homonota_darwinii_LJAMMCNP_11432 Homonota_spa_LJAMMCNP_10577 Homonota_spa_LJAMMCNP_5047 Homonota_rupicola_RUPI_2 _Homonota_rupicola_RUPI_1 Homonota_spb_MNHNP_11406 Homonota_spb_MNHNP_11409 Homonota_taragui_LJAMMCNP_14419 Homonota_taragui_LJAMMCNP_14420 Homonota_uruguayensis_UFRGS_1568 Homonota_uruguayensis_UFRGS_2140 Homonota_whitii_LJAMMCNP_14387 Homonota_whitii_LJAMMCNP_14388 Homonota_williamsii_LJAMMCNP_4467 Homonota_williamsii_LJAMMCNP_6517 Garthia_gaudichaudi_IBEG1_1 Garthia_gaudichaudi_IBEG1_2 Gymnodactylus_geckoides_LG_1050 Gymnodactylus_geckoides_LG_911 Phyllopezus_pollicaris_CHUNB_57388 Phyllodactylus_kofordi_TG_266 ; END; BEGIN CHARACTERS; TITLE 12S_Matrix; DIMENSIONS NCHAR=954; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = ?; MATRIX Homonota_andicola_LJAMMCNP_12493 ??????????????????GTTTGGCC-----GGGCGTGGTGAGGAGGGTG Homonota_andicola_LJAMMCNP_12495 ??????????????????GTTTGGCC-----GGGCGTGGTGAGGAGGGTG Homonota_borellii_LJAMMCNP_12116 GTGGTATTCTTAAGGGAGTGGTTTGG-----TATGGTGTTGAGGAGGGTG Homonota_borellii_LJAMMCNP_12125 GTGGTATTCTTAAGGGAGTGGTTTGG-----TATGGTGTTGAGGAGGGTG Homonota_darwinii_LJAMMCNP_11424 GTTGTGTCTATGGGTGATGGTTGATG-----GGGTGTGTTGAGGAGGGTG Homonota_darwinii_LJAMMCNP_11432 ??????????????????GGTTGATG-----GGGTGTGTTGAGGAGGGTG Homonota_spa_LJAMMCNP_10577 GTGGTTGTTTCTA-TGGGTTTATTTG-----TGGTGCGCTGAGGAGGGTG Homonota_spa_LJAMMCNP_5047 GTGGTTGTTTCTA-TGGGTTTATTTG-----TGGTGCGCTGAGGAGGGTG Homonota_rupicola_RUPI_2 ??GGTATTATTTA-GGGGTGATTTGG-----TATGGGGTTGAGGAGGGTG _Homonota_rupicola_RUPI_1 ??GGTATTATTTA-GGGGTGATTTGG-----TATGGGGTTGAGGAGGGTG Homonota_spb_MNHNP_11406 GTGGTTGTTTCTA-TGGGG-GTTTGT-----GTGTGCGTTGAGGAGGGTG Homonota_spb_MNHNP_11409 ?????????????????????????????????????GTTGAGGAGGGTG Homonota_taragui_LJAMMCNP_14419 GTGGTGTTATTTA-AGGGTGATTTGG-----TGTGGGGTTGAGGAGGGTG Homonota_taragui_LJAMMCNP_14420 GTGGTGTTATTTA-AGGGTGATTTGG-----TGTGGGGTTGAGGAGGGTG Homonota_uruguayensis_UFRGS_1568 GTGGTGTTTCTAGGGGTTTGTTTATG-----TGTGGTGGCGAGGAGGGTG Homonota_uruguayensis_UFRGS_2140 GTGGTGTTTCTAGGGGTTTGTTTATG-----TGTGGTGGCGAGGAGGGTG Homonota_whitii_LJAMMCNP_14387 ?GTTGATCTATGGGTGACGTTTGGCT-----GGGCGTGGTGAGGAGGGTG Homonota_whitii_LJAMMCNP_14388 ?GTTGATCTATGGGTGACGTTTGGCT-----GGGCGTGGTGAGGAGGGTG Homonota_williamsii_LJAMMCNP_4467 ??????????????????GATTAGTG-----GGGTGTGTTGAGGAGGGTG Homonota_williamsii_LJAMMCNP_6517 GTTGTGTCTATGAGTCATGATTAGTG-----GGGTGTGTTGAGGAGGGTG Garthia_gaudichaudi_IBEG1_1 GTGGGTTTATTATGAAGTGGTCTATA-----GTGGGTGGTGAGGAGGGTG Garthia_gaudichaudi_IBEG1_2 GTGGGTTTATTATGAAGTGGTCTATA-----GTGGGTGGTGAGGAGGGTG Gymnodactylus_geckoides_LG_1050 ??GGGGAAGTTTATGAATTTGTGTTT-----GAGGTGTGTGAGGAGGGTG Gymnodactylus_geckoides_LG_911 GTGGGGAAGTTTATGAATTTGTGTTT-----GAGGTGTGTGAGGAGGGTG Phyllopezus_pollicaris_CHUNB_57388 ???????????GTGGTTTATATATTGATTATATAAATTTTGAGGAGGGTG Phyllodactylus_kofordi_TG_266 ??????GTATATGTTGGGGGGGGTTA-----GGGCTAGTTGAAGAGGGTG Homonota_andicola_LJAMMCNP_12493 ACGGGCGGTGTGTACGCGCCCTGGAGCAGAGTTCAAGAGGGCAGAGCTTG Homonota_andicola_LJAMMCNP_12495 ACGGGCGGTGTGTACGCGCCCTGGAGCAGAGTTCAAGAGGGCAGAGCTTG Homonota_borellii_LJAMMCNP_12116 ACGGGCGGTGTGTACGCACCCCAGAGCGGGGTTCAAGCGGGCAGGTCTTG Homonota_borellii_LJAMMCNP_12125 ACGGGCGGTGTGTACGCACCCCAGAGCGGGGTTCAAGCGGGCAGGTCTTG Homonota_darwinii_LJAMMCNP_11424 ACGGCCGGTGTGTACGCGCCCCAGAGCGGGGTTCAAGCGGGCAGGCCTTG Homonota_darwinii_LJAMMCNP_11432 ACGGCCGGTGTGTACGCGCCCCAGAGCGGGGTTCAAGCGGGCAGGCCTTG Homonota_spa_LJAMMCNP_10577 ACGGGCGGTGTGTACGCGCCCCAGAGCGGGGTTCAACTGGGCAGGTCTTA Homonota_spa_LJAMMCNP_5047 ACGGGCGGTGTGTACGCGCCCCAGAGCGGGGTTCAACTGGGCAGGTCTTA Homonota_rupicola_RUPI_2 ACGGGCGGTGTGTACGCGCCCCAGAGCGGTGTTCAAGTGGGCAGGTCTTG _Homonota_rupicola_RUPI_1 ACGGGCGGTGTGTACGCGCCCCAGAGCGGTGTTCAAGTGGGCAGGTCTTG Homonota_spb_MNHNP_11406 ACGGGCGGTGTGTACGCGCCCCAGAGCGGGGTTCAATTGGGTAAGTCTTA Homonota_spb_MNHNP_11409 ACGGGCGGTGTGTACGCGCCCCAGAGCGGGGTTCAATTGGGTAAGTCTTA Homonota_taragui_LJAMMCNP_14419 ACGGGCGGTGTGTACGCGCCCCAGAGCGGTGTTCAAGTGGGCAGGTCTTG Homonota_taragui_LJAMMCNP_14420 ACGGGCGGTGTGTACGCGCCCCAGAGCGGTGTTCAAGTGGGCAGGTCTTG Homonota_uruguayensis_UFRGS_1568 ACGGGCGGTGTGTACGCGCCCCAGAGCGGTGTTCAAATGGGCAGGTCTTG Homonota_uruguayensis_UFRGS_2140 ACGGGCGGTGTGTACGCGCCCCAGAGCGGTGTTCAAATGGGCAGGTCTTG Homonota_whitii_LJAMMCNP_14387 ACGGGCGGTGTGTACGCGCCCCGGAGCGGGGTTCAAGAGGGCAGAACTTG Homonota_whitii_LJAMMCNP_14388 ACGGGCGGTGTGTACGCGCTCCGGAGCGGGGTTCAAGAGGGCAGAACTTG Homonota_williamsii_LJAMMCNP_4467 ACGGGCGGTGTGTACGCGCCCCAGAGCGGGGTTCAAGCGGGCAGGCCTTG Homonota_williamsii_LJAMMCNP_6517 ACGGGCGGTGTGTACGCGCCCCAGAGCGGGGTTCAAGCGGGCAGGCCTTG Garthia_gaudichaudi_IBEG1_1 ACGGGCGGTGTGTGCGCGCCCCAGAGCAGGTTTCAAGTGAGTGTGTCTTA Garthia_gaudichaudi_IBEG1_2 ACGGGCGGTGTGTGCGCGCCCCAGAGCAGGTTTCAAGTGAGTGTGTCTTA Gymnodactylus_geckoides_LG_1050 ACGGGCGGTGTGTGCGCGCCCTAGAGCGGGTTTCAATAGGGCATTTTCTT Gymnodactylus_geckoides_LG_911 ACGGGCGGTGTGTGCGCGCCCTAGAGCGGGTTTCAATAGGGCATTTTCTT Phyllopezus_pollicaris_CHUNB_57388 ACGGGCGGTGTGTACGCGTTCCAGGGCTTGATTCAATTGGGCAGAGGTAG Phyllodactylus_kofordi_TG_266 ACGGGCGGTGTGTACGCGTCCCAGGGCAGGCTTCAATCAGGCATGTCTTG Homonota_andicola_LJAMMCNP_12493 ---CCCTGTTTACTACTAAATCCGCCTGTTGGCTGACAGTTTCATGTAGC Homonota_andicola_LJAMMCNP_12495 ---CCCTGTTTACTACTAAATCCGCCTGTTGGCTGACAGTTTCATGTAGC Homonota_borellii_LJAMMCNP_12116 -CCCGGGGTTTACTGCTAAATCCGCCTGTGGG-CCCTTGTTTCATAGGGC Homonota_borellii_LJAMMCNP_12125 -CCCGGGGTTTACTGCTAAATCCGCCTGTGGG-CCCTTGTTTCATAGGGC Homonota_darwinii_LJAMMCNP_11424 ---CCCTGTTTACTGCTAAATCCGCCTGTTGGCCGACGGTTTCATGTGGT Homonota_darwinii_LJAMMCNP_11432 ---CCCTGTTTACTGCTAAATCCGCCTGTTGGCCGACGGTTTCATGTGGT Homonota_spa_LJAMMCNP_10577 CCCCGGAGTTTACTGCTAAATCCGCCTGTTAG-CCTTTATTTCATGTGGC Homonota_spa_LJAMMCNP_5047 CCCCGGAGTTTACTGCTAAATCCGCCTGTTAG-CCTTTATTTCATGTGGC Homonota_rupicola_RUPI_2 -CCGGGAATTTACTGCTAAATCCGCCTGGCGG-CCCCTGTTTCATGGGGC _Homonota_rupicola_RUPI_1 -CCGGGAATTTACTGCTAAATCCGCCTGGCGG-CCCCTGTTTCATGGGGC Homonota_spb_MNHNP_11406 CCCCAGAGTTTACTGCTAAATCCGCCTGTTAGCCTTATATTTCATGTGGC Homonota_spb_MNHNP_11409 CCCCAGAGTTTACTGCTAAATCCGCCTGTTAGCCTTATATTTCATGTGGC Homonota_taragui_LJAMMCNP_14419 -CCCGGAGTTTACTGCTAAATCCGCCTGTTGG-CCCCTGTTTCATGGGGC Homonota_taragui_LJAMMCNP_14420 -CCCGGAGTTTACTGCTAAATCCGCCTGTTGG-CCCCTGTTTCATGGGGC Homonota_uruguayensis_UFRGS_1568 --CCGGTGTTTACTGCTAAATCCGCCTTCTGGCCCTTTGTTTCATGGGGC Homonota_uruguayensis_UFRGS_2140 --CCGGTGTTTACTGCTAAATCCGCCTTCTGGTCCTTTGTTTCATGGGGC Homonota_whitii_LJAMMCNP_14387 ---CCCTGTTTACTACTAAATCCGCCTGTTGGCTAGCAGTTTCATGCAGC Homonota_whitii_LJAMMCNP_14388 ---CCCTGTTTACTACTAAATCCGCCTGTTGGCTAGCAGTTTCATGCAGC Homonota_williamsii_LJAMMCNP_4467 ---CCCTGTTTACTGCTAAATCCGCCTGTTGGCTGACGGTTTCATGTGGC Homonota_williamsii_LJAMMCNP_6517 ---CCCTGTTTACTGCTAAATCCGCCTGTTGGCTGACGGTTTCATGTGGC Garthia_gaudichaudi_IBEG1_1 --CTCTTGTTTACTACTAAATCCACCTTTTGGCGTAGTGTTTCAGGTAGC Garthia_gaudichaudi_IBEG1_2 --CTCTTGTTTACTACTAAATCCACCTTTTGGCGTAGTGTTTCAGGTAGC Gymnodactylus_geckoides_LG_1050 GTCCTGTATTTACTGCTAAATCCGTCTGTCGGTGTAGGTTTGCATGCAGC Gymnodactylus_geckoides_LG_911 GTCCTGTATTTACTGCTAAATCCGCCTGTCGGTGTAGATTTGCATGCAGC Phyllopezus_pollicaris_CHUNB_57388 --TCCAAATTTACTGCTAAATCCGCCTTTCAGTTTAATATTTCATATGAC Phyllodactylus_kofordi_TG_266 --CCAGAATTTACTGCTAAATCCGCCGGATGG-CTTAGGTTTCATATAGC Homonota_andicola_LJAMMCNP_12493 TTTGGTTGG----TTTGCTAT------TGGTAGCAAATGTAGCCCATCTC Homonota_andicola_LJAMMCNP_12495 TTTGGTTGG----TTTGCTAT------TGGTAGCAAATGTAGCCCATCTC Homonota_borellii_LJAMMCNP_12116 TTTTAGTGTGA--TTTGCTAT-----AGGCTAGCAAATGTAGCCCATCTT Homonota_borellii_LJAMMCNP_12125 TTTTAGTGTGA--TTTGCTAT-----AGGCTAGCAAATGTAGCCCATCTT Homonota_darwinii_LJAMMCNP_11424 CTTGGTTA-----TTTGCTGT-----TGAGTAGCAAATGTAGCCCATCTC Homonota_darwinii_LJAMMCNP_11432 CTTGGTTA-----TTTGCTGT-----TGAGTAGCAAATGTAGCCCATCTC Homonota_spa_LJAMMCNP_10577 TTGTGGTTGAGTGTTTGCTGT------GATCAGCAAATGTAGCCCATCTC Homonota_spa_LJAMMCNP_5047 TTGTGGTTGAGTGTTTGCTGT------GATCAGCAAATGTAGCCCATCTC Homonota_rupicola_RUPI_2 TTTCTGTGGGG--TTTGCTAT-----AGTTTAGCAAATGTAGCCCATCTT _Homonota_rupicola_RUPI_1 TTTCTGTGGGG--TTTGCTAT-----AGTTTAGCAAATGTAGCCCATCTT Homonota_spb_MNHNP_11406 TTGTGGTTGAATGTTTACTGG-------GTCAGTAAATGTAGCCCATCTC Homonota_spb_MNHNP_11409 TTGTGGTTGAATGTTTACTGG-------GTCAGTAAATGTAGCCCATCTC Homonota_taragui_LJAMMCNP_14419 TTTCTGTGGGG--TTTGCTAT-----GGGTTAGCAAATGTAGCCCATCTT Homonota_taragui_LJAMMCNP_14420 TTTCTGTGGGG--TTTGCTAT-----GGGTTAGCAAATGTAGCCCATCTT Homonota_uruguayensis_UFRGS_1568 TTTCAGTGGG---TTTGCTAT-----AGGTTAGCAAATGTAGCCCATCTT Homonota_uruguayensis_UFRGS_2140 TTTCAGTGGG---TTTGCTAT-----AGGTTAGCAAATGTAGCCCATCTT Homonota_whitii_LJAMMCNP_14387 TTTGGTTAG----TTTGCTGG-----TTGGTAGCAAATGTAGCCCATCTC Homonota_whitii_LJAMMCNP_14388 TTTGGTTAG----TTTGCTGG-----TTGGTAGCAAATGTAGCCCATCTC Homonota_williamsii_LJAMMCNP_4467 CTTGGTTA-----TTTGCTGT-----TGGACAGCAAATGTAGCCCATCTC Homonota_williamsii_LJAMMCNP_6517 CTTGGTTA-----TTTGCTGT-----TGGACAGCAAATGTAGCCCATCTC Garthia_gaudichaudi_IBEG1_1 GTGTGGTG-----TTTTCTAG------TATTAGAAAATGTAGCCCATCTC Garthia_gaudichaudi_IBEG1_2 GTGTGGTG-----TTTTCTAG------TATTAGAAAATGTAGCCCATCTC Gymnodactylus_geckoides_LG_1050 CTAGGGTG-----TTTTCTGGTGAAAAAGATAGAAAATGTAGCCCATCTC Gymnodactylus_geckoides_LG_911 CTAGGGTG-----TTTTCTGGTGAAGAAGATAGAAAATGTAGCCCATCTC Phyllopezus_pollicaris_CHUNB_57388 TTACGGTAGAG--TTTTCTGA-----TAGTTAGAAAATGTAACCCATCTC Phyllodactylus_kofordi_TG_266 CCGTAGTGG----TTTTCTGG-----GGGTGAGAAAATGTAGCCCATCTT Homonota_andicola_LJAMMCNP_12493 AG-CCCCCCCATGGGCTACACCTTGACCTGACGTGCTTGTGT--GGGGTG Homonota_andicola_LJAMMCNP_12495 AGCCCCCCCCATGGGCTACACCTTGACCTGACGTGCTTGTGT--GTGGTG Homonota_borellii_LJAMMCNP_12116 AGTCCCCCCCATGAGCTACACCTTGACCTGACGTACTAGC----GGAGTG Homonota_borellii_LJAMMCNP_12125 AGTCCCCCCCATGAGCTACACCTTGACCTGACGTACTAGC----GGAGTG Homonota_darwinii_LJAMMCNP_11424 AGCCCCCCCCATAAGCTACACCTTGACCTGACGTGCTTGTGT--GGGGTG Homonota_darwinii_LJAMMCNP_11432 AGCCCCCCCCATAAGCTACACCTTGACCTGACGTGCTTGTGT--GGGGTG Homonota_spa_LJAMMCNP_10577 TATCCGCCCCATTAGCTACACCTTGACCTGACGTACTAGC----GGGATG Homonota_spa_LJAMMCNP_5047 TATCCGCCCCATTAGCTACACCTTGACCTGACGTACTAGC----GGGATG Homonota_rupicola_RUPI_2 AGTCCCCCCCATTAGCTACACCTTGACCTGACGTGTTAGCG---GGGGTG _Homonota_rupicola_RUPI_1 AGTCCCCCCCATTAGCTACACCTTGACCTGACGTGTTAGCG---GGGGTG Homonota_spb_MNHNP_11406 TGTCCACCCCATTAGCTACACCTTGACCTGACGTGCTAGC----GAGATG Homonota_spb_MNHNP_11409 TGTCCACCCCATTAGCTACACCTTGACCTGACGTGCTAGC----GAGATG Homonota_taragui_LJAMMCNP_14419 AGCCCCCCCCATTGGCTACACCTTGACCTGACGTGTTAGC----GGGGTG Homonota_taragui_LJAMMCNP_14420 AGCCCCCCCCATTGGCTACACCTTGACCTGACGTGTTAGC----GGGGTG Homonota_uruguayensis_UFRGS_1568 AGTCCCCCCCATTAGCTACACCTTGACCTGACGTGCTAGC----GGGGTG Homonota_uruguayensis_UFRGS_2140 AGTCCCCCCCATTAGCTACACCTTGACCTGACGTGCTAGC----GGGGTG Homonota_whitii_LJAMMCNP_14387 AG-CCCCCCCATAGGCTACACCTTGACCTGACGTGCTTGTGT--GGGGTG Homonota_whitii_LJAMMCNP_14388 AG-CCCCCCCATAGGCTACACCTTGACCTGACGTGCTTGTGT--GGGGTG Homonota_williamsii_LJAMMCNP_4467 AGCCCCCCCCATAAGCTACACCTTGACCTGACGTGCTTGCGT--GGGGTG Homonota_williamsii_LJAMMCNP_6517 AGCCCCCCCCATAAGCTACACCTTGACCTGACGTGCTTGCGT--GGGGTG Garthia_gaudichaudi_IBEG1_1 TGTCCGCCCCATTGGCTACACCTTGACCTGACGTGTTTGCGTGTGGTGGG Garthia_gaudichaudi_IBEG1_2 TGTCCGCCCCATTGGCTACACCTTGACCTGACGTGTTTGCGTGTGGTGGG Gymnodactylus_geckoides_LG_1050 TG-CCCTTTTATTGGCTACACCTCGACCTGACGTATTAGGG---GGGGGC Gymnodactylus_geckoides_LG_911 TG-CCCTCTTATTGGCTACACCTTGACCTGACGTATTAGGG---GGGGGC Phyllopezus_pollicaris_CHUNB_57388 TG-CCCCACCATAAGCTACACCTTGACCTGACGTGCTAGT----GATATA Phyllodactylus_kofordi_TG_266 TGACCCCCTCATTAGCTACACCTTGACCTGACGTGTTAGTGT--GGTGGG Homonota_andicola_LJAMMCNP_12493 CGGTTGTGCCGACTTTT-GTGCTATCAGTAGGTAGGCTGGCGACGGCGGT Homonota_andicola_LJAMMCNP_12495 CGGTTGTGCCGACTTTT-GTGCTATCAGTAGGTAGGCTGGCGACGGCGGT Homonota_borellii_LJAMMCNP_12116 CTGTTGTGCCGACTGTTGTTGCTATCAGTAGGTAGGCTGGCGACGGCGGT Homonota_borellii_LJAMMCNP_12125 CTGTTGTGCCGACTGTTGTTGCTATCAGTAGGTAGGCTGGCGACGGCGGT Homonota_darwinii_LJAMMCNP_11424 CTGTTGTGCCGACTATTGGTGCTATCAGTAGGTGGGCTGGCGACGGCGGT Homonota_darwinii_LJAMMCNP_11432 CTGTTGTGCCGACTATTGGTGCTATCAGTAGGTGGGCTGGCGACGGCGGT Homonota_spa_LJAMMCNP_10577 CTGTTGTGCCGACTATTGTTTCTATCAGTAGGTGGGCTGGCGACGGCGGT Homonota_spa_LJAMMCNP_5047 CTGTTGTGCCGACTATTGTTTCTATCAGTAGGTGGGCTGGCGACGGCGGT Homonota_rupicola_RUPI_2 CTATTGTGCCGACTTTTGTTTCTATCAGTAGGTGGGCTGGCGACGGCGGT _Homonota_rupicola_RUPI_1 CTATTGTGCCGACTTTTGTTTCTATCAGTAGGTGGGCTGGCGACGGCGGT Homonota_spb_MNHNP_11406 CTGTTGTGCCGACTCTTGTTTCTATCAGTAGGTGGGCTGGCGACGGCGGT Homonota_spb_MNHNP_11409 CTGTTGTGCCGACTCTTGTTTCTATCAGTAGGTGGGCTGGCGACGGCGGT Homonota_taragui_LJAMMCNP_14419 CTATTGTGCCGACTTCTGTCTCTATCAGTAGGTGGGCTGGCGACGGCGGT Homonota_taragui_LJAMMCNP_14420 CTATTGTGCCGACTTCTGTCTCTATCAGTAGGTGGGCTGGCGACGGCGGT Homonota_uruguayensis_UFRGS_1568 CTATTATGCTGACTTTTGTTGCTATCAGTAGGTGGGCTGACGACGGCGGT Homonota_uruguayensis_UFRGS_2140 CTATTATGCTGACTTTTGTTGCTATCAGTAGGTGGGCTGACGACGGCGGT Homonota_whitii_LJAMMCNP_14387 CTGTTGTGCCGACTATT-GTGCTATCAGTAGGTAGGCTGGCGACGGCGGT Homonota_whitii_LJAMMCNP_14388 CTGTTGTGCCGACTATT-GTGCTATCAGTAGGTAGGCTGGCGACGGCGGT Homonota_williamsii_LJAMMCNP_4467 CTGTTGTGCCGACTATTGGTGCTATCAGTAGGTGGGCTGGCGACGGCGGT Homonota_williamsii_LJAMMCNP_6517 CTGTTGTGCCGACTATTGGTGCTATCAGTAGGTGGGCTGGCGACGGCGGT Garthia_gaudichaudi_IBEG1_1 CTGTTTTGCTTACTTGT-TTTCTATCACAGGGTAGGCTGGCGACGGCGGT Garthia_gaudichaudi_IBEG1_2 CTGTTTTGCTTACTTGT-TTTCTATCACAGGGTAGGCTGGCGACGGCGGT Gymnodactylus_geckoides_LG_1050 CTGTTGTGCATACTTTT-GTTCTTTTGGCAGGTAGGCTGACGACGGCGGT Gymnodactylus_geckoides_LG_911 CTGTTGTGCATACTTTT-GTTCTTTTGGCAGGTAGGCTGACGACGGCGGT Phyllopezus_pollicaris_CHUNB_57388 CTATTGTGCTTACTTTTGTTTCTGTTGTTAGGTAGGCTGGCGACGGCGGT Phyllodactylus_kofordi_TG_266 CTCTTTTGCTTGCTCTGTTGTCTATCATTAGGCGAGCTGGCGACGGCGGT Homonota_andicola_LJAMMCNP_12493 ATATAGGCTGTG----GGGCGAGGGGGGGTAGGGTATAGCGTGGGGTATC Homonota_andicola_LJAMMCNP_12495 ATATAGGCTGTG----GGGCGAGGGGGGGTAAGGTATAGCGTGGGGTATC Homonota_borellii_LJAMMCNP_12116 ATATAGGCGGGTT---TTGCAAGGGGGGGTGAGGTAGAGCGTGGAGTATC Homonota_borellii_LJAMMCNP_12125 ATATAGGCGGGTT---TTGCAAGGGGGGGTGAGGTAGAGCGTGGAGTATC Homonota_darwinii_LJAMMCNP_11424 ATATAGGCTGTG----GGGCGAGGGGGGGTCGGGTATAGCGTGGAGTATC Homonota_darwinii_LJAMMCNP_11432 ATATAGGCTGTG----GGGCGAGGGGGGGTCGGGTATAGCGTGGAGTATC Homonota_spa_LJAMMCNP_10577 ATATAGGCTGA-----AAGCTAGGGGGGGTCGGGTAAAGCGTGGAGTATC Homonota_spa_LJAMMCNP_5047 ATATAGGCTGA-----AAGCTAGGGGGGGTCGGGTAAAGCGTGGAGTATC Homonota_rupicola_RUPI_2 ATATAGGCGGG-CTTTATGCAAGGGGGGGTGAGGTGGAGCGTGGAGTATC _Homonota_rupicola_RUPI_1 ATATAGGCGGG-CTTTATGCAAGGGGGGGTGAGGTGGAGCGTGGAGTATC Homonota_spb_MNHNP_11406 ATATAGGCTGGGGGCCAGGGGGGGTCGGGT-----AAAGCGTGGAGTATC Homonota_spb_MNHNP_11409 ATATAGGCTGGGGGCCAGGGGGGGTCGGGT-----AAAGCGTGGAGTATC Homonota_taragui_LJAMMCNP_14419 ATATAGGCGGGTTTTATA-CAAGGGGGGGTGAGGTGGAGCGTGGAGTATC Homonota_taragui_LJAMMCNP_14420 ATATAGGCGGGTTTTATA-CAAGGGGGGGTGAGGTGGAGCGTGGAGTATC Homonota_uruguayensis_UFRGS_1568 ATATAGGCGGGGTTTGG--CAAGGGGGGGTGAGGTGGAGCGTGGGGTATC Homonota_uruguayensis_UFRGS_2140 ATATAGGCGGGGTTTGG--CAAGGGGGGGTGAGGTGGAGCGTGGGGTATC Homonota_whitii_LJAMMCNP_14387 ATATAGGCTGTG---AGGGCGAGGGGGGGTGGGGTATAGCGTGGGGTATC Homonota_whitii_LJAMMCNP_14388 ATATAGGCTGTG---AGGGCGAGGGGGGGTAGGGTATAGCGTGGGGTATC Homonota_williamsii_LJAMMCNP_4467 ATATAGGCTGTG----AGGCTAGGGGGGGTGGGGTATAACGTGGGGTATC Homonota_williamsii_LJAMMCNP_6517 ATATAGGCTGTG----AGGCTAGGGGGGGTGGGGTATAACGTGGGGTATC Garthia_gaudichaudi_IBEG1_1 ATATAGGCTGA-----AGGCGAGGGGGGGAAAGGTAAAGCGCGGAGTATC Garthia_gaudichaudi_IBEG1_2 ATATAGGCTGA-----AGGCGAGGGGGGGAAAGGTAAAGCGCGGAGTATC Gymnodactylus_geckoides_LG_1050 ATATAGGCTGAA----GTGCGAAAAAGGGTGAGGTTAAACGTGGAGTATC Gymnodactylus_geckoides_LG_911 ATATAGGCTGAA----GTGCGAAAAAGGGTGAGGTTAAACGTGGAGTATC Phyllopezus_pollicaris_CHUNB_57388 ATATAGGCTGAGT---ATTCTAGGGAGGGTTGGGTTTAGCGCGGAGTATC Phyllodactylus_kofordi_TG_266 ATATAGGCTGAGT-TGGTGCTAGAGGGGGGAAGGTTTAGCGTGGAGTATC Homonota_andicola_LJAMMCNP_12493 GATTATTGGACAGGCTCCTCTAGGTTGGTGTGGGGCACCGTCAAGTCCTT Homonota_andicola_LJAMMCNP_12495 GATTATTGGACAGGCTCCTCTAGGTTGGTGTGGGGCACCGTCAAGTCCTT Homonota_borellii_LJAMMCNP_12116 GATTATAGGACAGGCTCCTCTAGATTGGTGTGGGGCACCGTCAAGTCCTT Homonota_borellii_LJAMMCNP_12125 GATTATAGGACAGGCTCCTCTAGATTGGTGTGGGGCACCGTCAAGTCCTT Homonota_darwinii_LJAMMCNP_11424 GATTATAGGACAGGCTCCTCTAGGTTGGTATGGGGCACCGTCAAGTCCTT Homonota_darwinii_LJAMMCNP_11432 GATTATAGGACAGGCTCCTCTAGGTTGGTATGGGGCACCGTCAAGTCCTT Homonota_spa_LJAMMCNP_10577 GATTAAAGGACAGGCTCCTCTAGGCTGGTATGGGGCACCGTCAAGTCCTT Homonota_spa_LJAMMCNP_5047 GATTAAAGGACAGGCTCCTCTAGGCTGGTATGGGGCACCGTCAAGTCCTT Homonota_rupicola_RUPI_2 GATTACAGGACAGGCTCCTCTAGATTGGTGTGGGGCACCGTCAAGTCCTT _Homonota_rupicola_RUPI_1 GATTACAGGACAGGCTCCTCTAGATTGGTGTGGGGCACCGTCAAGTCCTT Homonota_spb_MNHNP_11406 GATTAAAGGACAGGCTCCTCTAGGTCGGTGTGGGGCACCGTCAAGTCCTT Homonota_spb_MNHNP_11409 GATTAAAGGACAGGCTCCTCTAGGTCGGTGTGGGGCACCGTCAAGTCCTT Homonota_taragui_LJAMMCNP_14419 GATTACAGGACAGGCTCCTCTAGGCTGGTGTGGGGCACCGTCAAGTCCTT Homonota_taragui_LJAMMCNP_14420 GATTACAGGACAGGCTCCTCTAGGCTGGTGTGGGGCACCGTCAAGTCCTT Homonota_uruguayensis_UFRGS_1568 GATTATAGGACAGGCTCCTCTAGGCTGGTGTGGGGCACCGTCAAGTCCTT Homonota_uruguayensis_UFRGS_2140 GATTATAGGACAGGCTCCTCTAGGCTGGTGTGGGGCACCGTCAAGTCCTT Homonota_whitii_LJAMMCNP_14387 GATTATTGGACAGGCTCCTCTAGGTTGGTGTGGGGCACCGTCAAGTCCTT Homonota_whitii_LJAMMCNP_14388 GATTATTGGACAGGCTCCTCTAGGTTGGTGTGGGGCACCGTCAAGTCCTT Homonota_williamsii_LJAMMCNP_4467 GATTATAGGACAGGCTCCTCTAGGTTGGTGTGGGGCACCGTCAAGTCCTT Homonota_williamsii_LJAMMCNP_6517 GATTATAGGACAGGCTCCTCTAGGTTGGTGTGGGGCACCGTCAAGTCCTT Garthia_gaudichaudi_IBEG1_1 GATTATAGGACAGGCTCCTCTAGGTTGGTGTGGGGCACCGTCAAGTCCTT Garthia_gaudichaudi_IBEG1_2 GATTATAGGACAGGCTCCTCTAGGTTGGTGTGGGGCACCGTCAAGTCCTT Gymnodactylus_geckoides_LG_1050 GGTTATAGGACAGGCTCCTCTAGGTCGGTGTAGGGCACCGTCAAGTCCTT Gymnodactylus_geckoides_LG_911 GGTTATAGGACAGGCTCCTCTAGGTCGGTGTAGGGCACCGTCAAGTCCTT Phyllopezus_pollicaris_CHUNB_57388 GATTATAGGACAGGCTCCTCTAGGTTGATATGGAACACCGTCAAGTCCTT Phyllodactylus_kofordi_TG_266 GATTAGGAGACAGGCTCCTCTAGGCTGGTGTGGGACACCGTCAAGTCCTT Homonota_andicola_LJAMMCNP_12493 GGAGTTTTAAGTTTTTCACTTGTAATTCTCTGGCAGATGGTGGT--ATAT Homonota_andicola_LJAMMCNP_12495 GGAGTTTTAAGTTTTTCACTTGTAATTCTCTGGCAGATGGTGGT--ATAT Homonota_borellii_LJAMMCNP_12116 AGAGTTTTAAGTTTTTCACTTGTAATTCTCGGGCAGATGGTGGT--ATGG Homonota_borellii_LJAMMCNP_12125 AGAGTTTTAAGTTTTTCACTTGTAATTCTCGGGCAGATGGTGGT--ATGG Homonota_darwinii_LJAMMCNP_11424 AGAGTTTCAAGTTTTTCACTTGTAATTCTCGGGCAGAGGGTGGT--ATAG Homonota_darwinii_LJAMMCNP_11432 AGAGTTTCAAGTTTTTCACTTGTAATTCTCGGGCAGAGGGTGGT--ATAG Homonota_spa_LJAMMCNP_10577 AGAGTTTCAAGTTTTTCACTTGTAGTTCTCTGGCAGATAGTAGT--ATGA Homonota_spa_LJAMMCNP_5047 AGAGTTTCAAGTTTTTCACTTGTAGTTCTCTGGCAGATAGTAGT--ATGA Homonota_rupicola_RUPI_2 AGAGTTTTAAGTTTTTCACTTGTAATTCTCGGGCAGATGGGGGT--ATAG _Homonota_rupicola_RUPI_1 AGAGTTTTAAGTTTTTCACTTGTAATTCTCGGGCAGATGGGGGT--ATAG Homonota_spb_MNHNP_11406 AGAGTTTGAAGTTTTTCACTTGTAGTTCTCTGGCAGATAGTGGC--ATGG Homonota_spb_MNHNP_11409 AGAGTTTGAAGTTTTTCACTTGTAGTTCTCTGGCAGATAGTGGC--ATGG Homonota_taragui_LJAMMCNP_14419 AGAGTTTTAAGTTTTTCACTTGTAATTCTCGGGCAGATGGGGGT--ATGG Homonota_taragui_LJAMMCNP_14420 AGAGTTTTAAGTTTTTCACTTGTAATTCTCGGGCAGATGGGGGT--ATGG Homonota_uruguayensis_UFRGS_1568 AGAGTTTTAAGTTTTTCACTTGTAATTCTCTGGCAGATGGTAGT--ATGA Homonota_uruguayensis_UFRGS_2140 AGAGTTTTAAGTTTTTCACTTGTAATTCTCTGGCAGATGGTAGT--ATGA Homonota_whitii_LJAMMCNP_14387 GGAGTTTCAAGTTTTTCACTTGTAATTCTCTGGCAGATGGTGGT--ATAT Homonota_whitii_LJAMMCNP_14388 GGAGTTTCAAGTTTTTCACTTGTAATTCTCTGGCAGATGGTGGT--ATAT Homonota_williamsii_LJAMMCNP_4467 AGAGTTTCAAGTTTTTCACTTGTAATTCTCGGGCAGAGGGTGGT--ATAG Homonota_williamsii_LJAMMCNP_6517 AGAGTTTCAAGTTTTTCACTTGTAATTCTCGGGCAGAGGGTGGT--ATAG Garthia_gaudichaudi_IBEG1_1 AGAGTTTTAAGTTTTTCACTTGTAATTTTCTGGCGGATAGTGGT--GTTG Garthia_gaudichaudi_IBEG1_2 AGAGTTTTAAGTTTTTCACTTGTAATTTTCTGGCGGATAGTGGT--GTTG Gymnodactylus_geckoides_LG_1050 TGAGTTTCAAGTTTTT-GCTTGTAGTCCTCTGGCGGATGGTGGG--GTTG Gymnodactylus_geckoides_LG_911 TGAGTTTCAAGTTTTT-GCTTGTAGTCCTCTGGCGGATGGTGGG--GTTG Phyllopezus_pollicaris_CHUNB_57388 TGAGTTTTAAGTTTTTCACTTGTAATTCTCTGGCGAGCATGA-------- Phyllodactylus_kofordi_TG_266 AGAGTTTTAAGTTTTTCATTTGTAATCCTCTGGCGGATGGCAGTGGGTGT Homonota_andicola_LJAMMCNP_12493 TTAAA-----CCATCTTGGTTTACGGCTGAGCATAGTAGGGTATCTAATC Homonota_andicola_LJAMMCNP_12495 TTAAA-----CCATCTTGGTTTACGGCTGAGCATAGTAGGGTATCTAATC Homonota_borellii_LJAMMCNP_12116 TTGAA-----CCATCTTGGTTTACGGCCGGGTATAGTAGGGTATCTAATC Homonota_borellii_LJAMMCNP_12125 TTGAA-----CCATCTTGGTTTACGGCCGGGTATAGTAGGGTATCTAATC Homonota_darwinii_LJAMMCNP_11424 TTAAA-----CTCTCTTGGTTTACAACTGAGTATAGTAGGGTATCTAATC Homonota_darwinii_LJAMMCNP_11432 TTAAA-----CTCTCTTGGTTTACAACTGAGTATAGTAGGGTATCTAATC Homonota_spa_LJAMMCNP_10577 GGAAA-----CTATCTTGGTTTATGGCTGAGTATAGTAGGGTATCTAATC Homonota_spa_LJAMMCNP_5047 GGAAA-----CTATCTTGGTTTATGGCTGAGTATAGTAGGGTATCTAATC Homonota_rupicola_RUPI_2 TTAAA-----CCATCTTGGTTTACGACCGGGTATAGTAGGGTATCTAATC _Homonota_rupicola_RUPI_1 TTAAA-----CCATCTTGGTTTACGACCGGGTATAGTAGGGTATCTAATC Homonota_spb_MNHNP_11406 GGAGA-----CTATCTTGGTTTATGGCTGAGTATAGTAGGGTATCTAATC Homonota_spb_MNHNP_11409 GGAGA-----CTATCTTGGTTTATGGCTGAGTATAGTAGGGTATCTAATC Homonota_taragui_LJAMMCNP_14419 TTGAA-----CCATCTTGGTTTACGACCGGGTATAGTAGGGTATCTAATC Homonota_taragui_LJAMMCNP_14420 TTGAA-----CCATCTTGGTTTACGACCGGGTATAGTAGGGTATCTAATC Homonota_uruguayensis_UFRGS_1568 TTAAA-----CCATCTTGGTTTACGACCGGGTATAGTAGGGTATCTAATC Homonota_uruguayensis_UFRGS_2140 TTAAA-----CCATCTTGGTTTACGACCGGGTATAGTAGGGTATCTAATC Homonota_whitii_LJAMMCNP_14387 TTAAA-----TCATCTTGGTTTACAGCTGAGCATAGTAGGGTATCTAATC Homonota_whitii_LJAMMCNP_14388 TTAAA-----TCATCTTGGTTTACAGCTGAGCATAGTAGGGTATCTAATC Homonota_williamsii_LJAMMCNP_4467 TTAAA-----TCCTCTGGGTTTACAACTGAGTATAGTAGGGTATCTAATC Homonota_williamsii_LJAMMCNP_6517 TTAAA-----TCCTCTGGGTTTACAACTGAGTATAGTAGGGTATCTAATC Garthia_gaudichaudi_IBEG1_1 ACAGT-----CTATCTGTGTTTATGGCTGGGCATAGTAGGGTATCTAATC Garthia_gaudichaudi_IBEG1_2 ACAGT-----CTATCTGTGTTTATGGCTGGGCATAGTAGGGTATCTAATC Gymnodactylus_geckoides_LG_1050 GGGAAAGGGTTAATCTAGTTTTACGGCCGAGCATAGTAGGGTATCTAATC Gymnodactylus_geckoides_LG_911 GGGAAAGAGTCAATCTAGTTTTACGGCCGAGCATAGTAGGGTATCTAATC Phyllopezus_pollicaris_CHUNB_57388 ----------TTGCCTGGGTTTACGACTAAGCATAGTAGGGTATCTAATC Phyllodactylus_kofordi_TG_266 TGGGG-----CCATCGTAGTTAACGGCTGGGTATAGCAGGGTATCTAATC Homonota_andicola_LJAMMCNP_12493 CTAGTTTGGGCCTCAGTTTTCGTGAGGTCAAGGTGTT------ATAGAAA Homonota_andicola_LJAMMCNP_12495 CTAGTTTGGGCCTCAGTTTTCGTGAGGTCAAGGTGTT------ATAGAAA Homonota_borellii_LJAMMCNP_12116 CTAGTTTAGGTCCTGGCTTTCGTGAGGTCAAAGTTTTTG----GTAGAAA Homonota_borellii_LJAMMCNP_12125 CTAGTTTAGGTCCTGGCTTTCGTGAGGTCAAAGTTTTTG----GTAGAAA Homonota_darwinii_LJAMMCNP_11424 CTAGTTTATGGCTCAGTTTTCGTGAGGTCAAAGCGGC------GTAGAAA Homonota_darwinii_LJAMMCNP_11432 CTAGTTTATGGCTCAGTTTTCGTGAGGTCAAAGCGGC------GTAGAAA Homonota_spa_LJAMMCNP_10577 CTAGTTTATGTCTCAGTTTTCGTGAGGTCAAAGTGTGTGATG-ATAGAAA Homonota_spa_LJAMMCNP_5047 CTAGTTTATGTCTCAGTTTTCGTGAGGTCAAAGTGTGTGATG-ATAGAAA Homonota_rupicola_RUPI_2 CTAGTTTAGGTCCTGGTTTTCGTGA-GTCAAAGTCTTTA----RWAAAAA _Homonota_rupicola_RUPI_1 CTAGTTTAGGTCCTGGTTTTCGTGAGGTCAAAGTCTTTA----GTAAAAA Homonota_spb_MNHNP_11406 CTAGTTTATGTCTCAGTTTTCGTGAGATCAAAGCGTGTGGTG-GGAGAAA Homonota_spb_MNHNP_11409 CTAGTTTATGTCTCAGTTTTCGTGAGATCAAAGCGTGTGGTG-GGAGAAA Homonota_taragui_LJAMMCNP_14419 CTAGTTTAGGCCCCGGTTTTCGTGA-GTCAAAGTCTTTG----GTGGAAA Homonota_taragui_LJAMMCNP_14420 CTAGTTTAGGCCCCGGTTTTCGTGA-GTCAAAGTCTTTG----GTGGAAA Homonota_uruguayensis_UFRGS_1568 CTAGTTTAGGTCTCGGTTTTCGTGA-GTCAAAGTTCTTG----GTAGAAA Homonota_uruguayensis_UFRGS_2140 CTAGTTTAGGTCTCGGTTTTCGTGA-GTCAAAGTTCTTG----GTAGAAA Homonota_whitii_LJAMMCNP_14387 CTAGTTTGGGTCTCAGTTTTCGTGGGGTCAAGGTGTT------ATAGAAA Homonota_whitii_LJAMMCNP_14388 CTAGTTTGGGTCTCAGTTTTCGTGGGGTCAAGGTGGT------ATAGAAA Homonota_williamsii_LJAMMCNP_4467 CTAGTTTATGGCTCAGCTTTCGTGAGGTCAAAGCTTT------GTAGAAA Homonota_williamsii_LJAMMCNP_6517 CTAGTTTATGGCTCAGCTTTCGTGAGGTCAAAGCTTT------GTAGAAA Garthia_gaudichaudi_IBEG1_1 CTAGTTTGGGCCCCAGCAGTCGTGTGGTCAAATTTGTTTTTA-ACAGGGA Garthia_gaudichaudi_IBEG1_2 CTAGTTTGGGCCCCAGCAGTCGTGTGGTCAAATTTGTTTTTA-ACAGGGA Gymnodactylus_geckoides_LG_1050 CTAGTTTGGGTCTCGGGTTTCGTGAAGTCAAAGCTGCTTGGAAGTTGGAG Gymnodactylus_geckoides_LG_911 CTAGTTTGGGTCTCGGGTTTCGTGAAGTCAAAGCTGCTTGGAAGTTGGAG Phyllopezus_pollicaris_CHUNB_57388 CTAGTTTGGGTCTTAGTTTTCGTGGGGTCAAAGCTGTTTAGTATGAGAAG Phyllodactylus_kofordi_TG_266 CTGGTTTATGTCCCAGCTTTCGTGGCGGCAAAGAGGTTCGGG-GGGGGAC Homonota_andicola_LJAMMCNP_12493 GTCGTA-GGGTCTCCGGTGAATATT-TGCATTTTATAGCTATA---TTAG Homonota_andicola_LJAMMCNP_12495 GTCGTA-GGGTCTCCGGTGAATATT-TGCATTTTATAGCTATA---TTAG Homonota_borellii_LJAMMCNP_12116 ATCGGC-GGGGTTCCAGTATATATA-TGCGTTTTACAGCTATA---TTAG Homonota_borellii_LJAMMCNP_12125 ATCGGC-GGGGTTCCAGTATATATA-TGCGTTTTACAGCTATA---TTAG Homonota_darwinii_LJAMMCNP_11424 ATCGCT-GGTTTTCCAGTAAATATG-TGCATTTTACAGCTATA---TTGT Homonota_darwinii_LJAMMCNP_11432 ATCGCT-GGTTTTCCAGTAAATATA-TGCATTTTACAGCTATA---TTGT Homonota_spa_LJAMMCNP_10577 TTCGGT-GGGGTTCCAGTGAATATA-TGCTTTTTACAGCTTTAAG-TTAG Homonota_spa_LJAMMCNP_5047 TTCGGT-GGGGTTCCAGTGAATATA-TGCTTTTTACAGCTTTAAG-TTAG Homonota_rupicola_RUPI_2 ATCGTT-GGGGTTCCAGTAGGTATG-GGCGTTTTACAGCTATA---CTAG _Homonota_rupicola_RUPI_1 ATCGTT-GGGGTTCCAGTAGGTATG-TGCGTTTTACAGCTATA---CTAG Homonota_spb_MNHNP_11406 CTCGGT-GGGATTCCAGTGCATATA-TGCTTTTTACAGCTTTAAAATTAG Homonota_spb_MNHNP_11409 CTCGGT-GGGATTCCAGTGCATATA-TGCTTTTTACAGCTTTAAAATTAG Homonota_taragui_LJAMMCNP_14419 ATCGTTGGGGGTTCCAGTGTGTATG-TGCGTTTTACAGCTATA---CCAG Homonota_taragui_LJAMMCNP_14420 ATCGTTGGGGGTTCCAGTGTGTATG-TGCGTTTTACAGCTATA---CCAG Homonota_uruguayensis_UFRGS_1568 GTCATT-GGGGTTCCGGTATATGTG-TGCGTTTTACAGCTGTA---TTAT Homonota_uruguayensis_UFRGS_2140 GTCATT-GGGGTTCCGGTATATGTG-TGCGTTTTACAGCTGTA---TTAT Homonota_whitii_LJAMMCNP_14387 GTCTTA-GAGGTTCCAATAAATATA-TGCATTTTATAGCTATG---TTAG Homonota_whitii_LJAMMCNP_14388 GTCTTA-GAGGTTCCAGTAAATATA-TGCATTTTATAGCTATG---TTAG Homonota_williamsii_LJAMMCNP_4467 ATCGGA-GGTCTTCCAGTAAATATG-TGCATTTTACAGCTGTA---TTGT Homonota_williamsii_LJAMMCNP_6517 ATCGGA-GGTCTTCCAGTAAATATG-TGCATTTTACAGCTGTA---TTGT Garthia_gaudichaudi_IBEG1_1 GTTATT-GGTGTTCTTAGTTGTATG-TGTATTTTACAGCTTTA---CTAT Garthia_gaudichaudi_IBEG1_2 GTTATT-GGTGTTCTTAGTTGTATG-TGTATTTTACAGCTTTA---CTAT Gymnodactylus_geckoides_LG_1050 CTTGGT-GGGGTTTATTTTGTTGTG-TGAATTTTACATCTACG---GTGT Gymnodactylus_geckoides_LG_911 CTTGGT-GGGGTTTATTTTGCTGTG-TGAATTTTACATCTACG---GTGT Phyllopezus_pollicaris_CHUNB_57388 CATTAT-GGGATTCTTTTGGATATT-GGTGTTTTACGCCTTTAA-TTCAA Phyllodactylus_kofordi_TG_266 GTTGTT-GGTGTGTACTTGTATATGTTGTATTTTATCACTATA---TTAA Homonota_andicola_LJAMMCNP_12493 GGTTAAGAGTTTCT--TTATGGGCTG------CTCTAGTCACGTTTTATG Homonota_andicola_LJAMMCNP_12495 GGTTAAGAGTTTCT--TTATGGGCTG------CTCTAGTCACGTTTTATG Homonota_borellii_LJAMMCNP_12116 GGTTGTGAGTTTCT--GGGGGCGGTGG-----TTCTAGTCACGTTTTATG Homonota_borellii_LJAMMCNP_12125 GGTTGTGAGTTTCT--GGGGGCGGTGG-----TTCTAGTCACGTTTTATG Homonota_darwinii_LJAMMCNP_11424 GGTTAAGAATTTCT--TTCAGGTTAGG-----TTCTAGTCACATTTTATG Homonota_darwinii_LJAMMCNP_11432 GGTTAAGAATTTCT--TTCAGGTTAGG-----TTCTAGTCACATTTTATG Homonota_spa_LJAMMCNP_10577 GGTTCAGAGTTTCT--TTGTTATTAAG-----TTCTAGTCACATTTTATG Homonota_spa_LJAMMCNP_5047 GGTTCAGAGTTTCT--TTGTTATTAAG-----TTCTAGTCACATTTTATG Homonota_rupicola_RUPI_2 GGTTGGGAGTTTCTKGGGGGGGGGGGGGGGGTTTCTAGTCACGTTTTATG _Homonota_rupicola_RUPI_1 GGTTGTGAGTTTCT--GGGGGGGGGGGGGGGTTTCTAGTCACGTTTTATG Homonota_spb_MNHNP_11406 GGTTCAGGGTTTCT--TTGTTGTTAAG-----TTCTAGTCACATTTTATG Homonota_spb_MNHNP_11409 GGTTCAGGGTTTCT--TTGTTGTTAAG-----TTCTAGTCACATTTTATG Homonota_taragui_LJAMMCNP_14419 GGTTGTGAGTTTCC--GGGGGAGGTG------TTCTAGTCACGTTTTATG Homonota_taragui_LJAMMCNP_14420 GGTTGTGAGTTTCC--GGGGGGAAGGTG----TTCTAGTCACGTTTTATG Homonota_uruguayensis_UFRGS_1568 GGTTCCGAGTTTCT--TTGGGGTTAG------TTCTGATCACGTTTTATG Homonota_uruguayensis_UFRGS_2140 GGTTCCGAGTTTCT--TTGGGGTTAG------TTCTGATCACGTTTTATG Homonota_whitii_LJAMMCNP_14387 GGTTTAGAATTTCT--TTATGGGGTGGG----CTCTAGCCACGTTTTATG Homonota_whitii_LJAMMCNP_14388 GGTTTAGAATTTCT--TTATGGGGTGGG----CTCTAGCCACGTTTTATG Homonota_williamsii_LJAMMCNP_4467 GGTTAAGAATTTCT--TTGGGGGGAGG-----TTCTAGTCACATTTTATG Homonota_williamsii_LJAMMCNP_6517 GGTTAAGAATTTCT--TTGGGGGGAGG-----TTCTAGTCACATTTTATG Garthia_gaudichaudi_IBEG1_1 TGTTGCGCTCTCTTGTTTATAAC-TTTT----TTCTAGGCACGTTTTACG Garthia_gaudichaudi_IBEG1_2 TGTTGCGCTCTCTTGTTTATAACTTTTT----TTCTAGGCACGTTTTACG Gymnodactylus_geckoides_LG_1050 GGTTTTAGCTTCAAG-TTATAAGGTTGG----TTCTAGTCACGTTTTACG Gymnodactylus_geckoides_LG_911 GGTTTTAGCTTCAAG-TTATAAGGTTGG----TTCTAGTCACGTTTTACG Phyllopezus_pollicaris_CHUNB_57388 GTTTTAGCTTCTTC--TATTGAACTTAT----TTCTAGTCACGTTTTACG Phyllodactylus_kofordi_TG_266 GATGACAGGTCCCG--TGGGGAAGTATA----TTCTAGTCACGATTTACA Homonota_andicola_LJAMMCNP_12493 CCGTTGGT--ATTGTTTTGGGCCCTTCGTATAACCGCGGTGGCTGGCACG Homonota_andicola_LJAMMCNP_12495 CCGTTGGT--ATTGTTTTGGGCCCTTCGTATAACCGCGGTGGCTGGCACG Homonota_borellii_LJAMMCNP_12116 CCGTGGGT--ATTGTTTTGAGTCCTTCGTATAACCGCGGTGGCTGGCACG Homonota_borellii_LJAMMCNP_12125 CCGTGGGT--ATTGTTTTGAGTCCTTCGTATAACCGCGGTGGCTGGCACG Homonota_darwinii_LJAMMCNP_11424 CCGTTGGT--GTTGTTTTGGGCCCTTCGTATAACCGCGGTGGCTGGCACG Homonota_darwinii_LJAMMCNP_11432 CCGTTGGT--GTTGTTTTGGGCCCTTCGTATAACCGCGGTGGCTGGCACG Homonota_spa_LJAMMCNP_10577 CCGTGGTT-GATTGTTTTGGGTCCTTCGTATAACCGCGGTGGCTGGCACG Homonota_spa_LJAMMCNP_5047 CCGTGGTT-GATTGTTTTGGGTCCTTCGTATAACCGCGGTGGCTGGCACG Homonota_rupicola_RUPI_2 CCGTTGGT--ATTGTTTCGAGTCCTTCGTATAACCGCGGCGGCTGGCACG _Homonota_rupicola_RUPI_1 CCGTTGGT--ATTGTTTCGAGTCCTTCGTATAACCGCGGCGGCTGGCACG Homonota_spb_MNHNP_11406 CCGTGGGTTGATTGTTTTGGGCCCTTCGTATAACCGCGGTGGCTGGCACG Homonota_spb_MNHNP_11409 CCGTGGGTTGATTGTTTTGGGCCCTTCGTATAACCGCGGTGGCTGGCACG Homonota_taragui_LJAMMCNP_14419 CCGTTAGT--ATTGTTTCGAGTCCTTCGTGTAACCGCGGCGGCTGGCACG Homonota_taragui_LJAMMCNP_14420 CCGTTAGT--ATTGTTTCGAGTCCTTCGTGTAACCGCGGCGGCTGGCACG Homonota_uruguayensis_UFRGS_1568 CCGTAGGT--ATTGTTTTGAGTCCTTCGTATAACCGCGGTGGCTGGCACG Homonota_uruguayensis_UFRGS_2140 CCGTAGGT--ATTGTTTTGAGTCCTTCGTATAACCGCGGTGGCTGGCACG Homonota_whitii_LJAMMCNP_14387 CCGTTGGT--ATTGTTTTGGGTCCTTCGTATAACCGCGGTGGCTGGCACG Homonota_whitii_LJAMMCNP_14388 CCGTTGGT--ATTGTTTTGGGTCCTTCGTATAACCGCGGTGGCTGGCACG Homonota_williamsii_LJAMMCNP_4467 CCGTTGGT--GTTGTTTTGGGTCCTTCGTATAACCGCGGTGGCTGGCACG Homonota_williamsii_LJAMMCNP_6517 CCGTTGGT--GTTGTTTTGGGTCCTTCGTATAACCGCGGTGGCTGGCACG Garthia_gaudichaudi_IBEG1_1 CCGGGGGGC-TTATTTTGGGCCATGACGTGTAACCGCGGTGGCTGGCACG Garthia_gaudichaudi_IBEG1_2 CCGGGGGGC-TTATTTTGGGCCATGACGTGTAACCGCGGTGGCTGGCACG Gymnodactylus_geckoides_LG_1050 CCGGCAGAAG-TTATTTTGAGCCCGTCGTATAACCGCGGTGGCTGGCACG Gymnodactylus_geckoides_LG_911 CCGGCAGAAG-TTATTTTGAGCCCGTCGTATAACCGCGGTGGCTGGCACG Phyllopezus_pollicaris_CHUNB_57388 CCGCATCTAA-TTATTTAAGGTCTTCCGTATAACCGCGGTGGCTGGCACG Phyllodactylus_kofordi_TG_266 CCGGGGGGCG-TTATTTAGGGTCTTTCGTATAACCGCGGTGGCTGGCACG Homonota_andicola_LJAMMCNP_12493 AAGTTTACCGGCCCTT-TGGTTTTAGCCATGGCTGAGTCGGGCTTAA--T Homonota_andicola_LJAMMCNP_12495 AAGTTTACCGGCCCTT-TGGTTTTAGCCATGGCTGAGTCGGGCTTAA--T Homonota_borellii_LJAMMCNP_12116 AAGTTTACCGACGCTTG----TGTGGCCATAGCTGAGTCAGGCTTATG-T Homonota_borellii_LJAMMCNP_12125 AAGTTTACCGACGCTTG----TGTGGCCATAGCTGAGTCAGGCTTATG-T Homonota_darwinii_LJAMMCNP_11424 AAGTTTACCGGCCCTG-TG--TTAAACCATGGCTAAGTCGGGCTTATG-T Homonota_darwinii_LJAMMCNP_11432 AAGTTTACCGGCCCTG-TG--TTAAACCATGGCTAAGTCGGGCTTATG-T Homonota_spa_LJAMMCNP_10577 GAGTTTACCGGCCCTA-----GGTGGCCATGGCTGAGTCAGGCTTATG-T Homonota_spa_LJAMMCNP_5047 GAGTTTACCGGCCCTA-----GGTGGCCATGGCTGAGTCAGGCTTATG-T Homonota_rupicola_RUPI_2 GAGTTTGCCGACGCTA-TG--TGTGGCCGTAGCTGAGTCGGGCTTATG-T _Homonota_rupicola_RUPI_1 GAGTTTGCCGACGCTA-TG--TGTGGCCGTAGCTGAGTCGGGCTTATG-T Homonota_spb_MNHNP_11406 GAGTTTACCGGCCCCT-----GGTGGCCGTGGCTGAGTCAGGCTTATA-T Homonota_spb_MNHNP_11409 GAGTTTACCGGCCCCT-----GGTGGCCGTGGCTGAGTCAGGCTTATA-T Homonota_taragui_LJAMMCNP_14419 AAGTTTGCCGACGCTT-TG--TGTGGCCGTAGCTAAGTCGGGCTTATG-T Homonota_taragui_LJAMMCNP_14420 AAGTTTGCCGACGCTT-TG--TGTGGCCGTAGCTAAGTCGGGCTTATG-T Homonota_uruguayensis_UFRGS_1568 AAGTTTACCGACGCTTG--TGTAAGGCCATAGCTGAGTCGGGCTTTTGTT Homonota_uruguayensis_UFRGS_2140 AAGTTTACCGACGCTTG--TGTAAGGCCATAGCTGAGTCGGGCTTTTGTT Homonota_whitii_LJAMMCNP_14387 AAGTTTACCGGCCCTC-TGG-CTGAGCCATGGCTAAGTCGGGCTTAAA-T Homonota_whitii_LJAMMCNP_14388 AAGTTTACCGGCCCTC-TGG-CTGAGCCATGGCTAAGTCGGGCTTAAA-T Homonota_williamsii_LJAMMCNP_4467 AAGTTTACCGACCCTG-TG--TTGAACCATAGCTAAGTCGGGCTTATG-T Homonota_williamsii_LJAMMCNP_6517 AAGTTTACCGACCCTG-TG--TTGAACCATAGCTAAGTCGGGCTTATG-T Garthia_gaudichaudi_IBEG1_1 TAGTTTACCGGCCCTA-AGTGCGTAGCTATGACTAAGTCGAGTTTGG--G Garthia_gaudichaudi_IBEG1_2 TAGTTTACCGGCCCTA-AGTGCGTAGCTATGACTAAGTCGAGTTTGG--G Gymnodactylus_geckoides_LG_1050 GAGTTTACCGGCTCGG-----GGCAACTCTGGCTAAGTCGGGCTTA---- Gymnodactylus_geckoides_LG_911 GAGTTTACCGGCTCGG-----GGCAACTCTGGCTAAGTCGGGCTTA---- Phyllopezus_pollicaris_CHUNB_57388 GAATTTACCGACCTTA-----TGTAACCGTGGCTAAGTCGAGCTTG---- Phyllodactylus_kofordi_TG_266 GAATTTACCGGCCCCAAT---TATGGCTGTGGCTAAGTCGAGCTTGTAGG Homonota_andicola_LJAMMCNP_12493 ATGGGCCCATTGCTTAATGTCTGTCACTGCTGGGGCCCGTGGGGGTGTGG Homonota_andicola_LJAMMCNP_12495 ATGGGCCCATTGCTTAATGTCTGTCACTGCTGGGGCCCGTGGGGGTGTGG Homonota_borellii_LJAMMCNP_12116 TTGGGCCCATTGCTTAATGTTTATCACTGCTGAAATCCGTGGGGGTGTGG Homonota_borellii_LJAMMCNP_12125 TTGGGCCCATTGCTTAATGTTTATCACTGCTGAAATCCGTGGGGGTGTGG Homonota_darwinii_LJAMMCNP_11424 GTGGGCCCATTGCTTAATGTTTGTCACTGCTGAGATCCGTGGGGGTGTGG Homonota_darwinii_LJAMMCNP_11432 GTGGGCCCATTGCTTAATGTTTGTCACTGCTGAGATCCGTGGGGGTGTGG Homonota_spa_LJAMMCNP_10577 GTGGGCCTATTGCTCAATGTTTATCACTGCTGGGGTCCGTGGGGATGTGG Homonota_spa_LJAMMCNP_5047 GTGGGCCTATTGCTCAATGTTTATCACTGCTGGGGTCCGTGGGGATGTGG Homonota_rupicola_RUPI_2 TTGGGCCCATTGCTTAATGTTTATCACTGCTGAAGTCCGTGGGGGTGTGG _Homonota_rupicola_RUPI_1 TTGGGCCCATTGCTTAATGTTTATCACTGCTGAAGTCCGTGGGGGTGTGG Homonota_spb_MNHNP_11406 TTGGGCCTATTGCTCAATGTTTATCACTGCTGAGACCCGTGTGGGTGTGG Homonota_spb_MNHNP_11409 TTGGGCCTATTGCTCAATGTTTATCACTGCTGAGACCCGTGTGGGTGTGG Homonota_taragui_LJAMMCNP_14419 TTGGGCCCATTGCTTAATGTCTATCACTGCTGAAGTCCGTGGGGGTGTGG Homonota_taragui_LJAMMCNP_14420 TTGGGCCCATTGCTTAATGTCTATCACTGCTGAAGTCCTGGGGGGTGTGG Homonota_uruguayensis_UFRGS_1568 TTGGGCCCATTGCTTAATGTTTATCACTGCTGAAGTCCGTGGGGGTGTGG Homonota_uruguayensis_UFRGS_2140 TTGGGCCCATTGCTTAATGTTTATCACTGCTGAAGTCCGTGGGGGTGTGG Homonota_whitii_LJAMMCNP_14387 ATGGGCCCATTGCTTAATGTTTGTCACTGCTGAGGTCCGTGGGGGCGTGG Homonota_whitii_LJAMMCNP_14388 ATGGGCCCATTGCTTAATGTTTGTCACTGCTGAGGCCCGTGGGGGCGTGG Homonota_williamsii_LJAMMCNP_4467 CTGGGCCCATTGCTTAATGTCTGTCACTGCTGAGACCCGTGGGGGTGTGG Homonota_williamsii_LJAMMCNP_6517 CTGGGCCCATTGCTTAATGTCTGTCACTGCTGAGACCCGTGGGGGTGTGG Garthia_gaudichaudi_IBEG1_1 TAATACTCATTGCTTAATGTCTATCACTGCTGGGGCCCGTGGGGGTGTGG Garthia_gaudichaudi_IBEG1_2 TAATACTCATTGCTTAATGTCTATCACTGCTGGGGCCCGTGGGGGTGTGG Gymnodactylus_geckoides_LG_1050 ---GGCCCATGGCTTAATGTCTATCACTGCTGAAGTCCGTGGGGGTGTGG Gymnodactylus_geckoides_LG_911 ---GGCCCATGGCTTAATGTCTATCACTGCTGAGGTCCGTGGGGGTGTGG Phyllopezus_pollicaris_CHUNB_57388 ---GGCTCATTGCTAAATGTTTATCACTGCTGAAGGCCGTGGGGGTGTGG Phyllodactylus_kofordi_TG_266 GGTCGCTCATTGCTTAATGTCTATCACTGCTGAAATCCGTGGGGGTGTGG Homonota_andicola_LJAMMCNP_12493 CGAAGCTAGACGTCATGGGCA--------GGGCGTGTGTGCCTGATATCA Homonota_andicola_LJAMMCNP_12495 CGAAGCTAGACGTCATGGGCA--------GGGCGTGTGTGCCTGATATCA Homonota_borellii_LJAMMCNP_12116 CGGGGCTAGACGTCATGGGCTGAACAT--TTGTGTGCGTGCCTGATGT-A Homonota_borellii_LJAMMCNP_12125 CGGGGCTAGACGTCATGGGCTGAACAT--TTGTGTGCGTGCCTGATGTCA Homonota_darwinii_LJAMMCNP_11424 CAAAGCTAGGCGTCATGGGCAA-------ACATGTGTGTGCCTGATGCCG Homonota_darwinii_LJAMMCNP_11432 CAAAGCTAGGCGTCATGGGCAA-------ACATGTGTGTGCCTGATGCCG Homonota_spa_LJAMMCNP_10577 CAAGGCTAGACGTCGTGGGCTTAA-----AGGGGTAGGTGCCTGATATCA Homonota_spa_LJAMMCNP_5047 CAAGGCTAGACGTCGTGGGCTTAA-----AGGGGTAGGTGCCTGATATCA Homonota_rupicola_RUPI_2 CGGGGCTAGATGTCATGGGCTTAGCTTT-AATTGTGCGTGCCTGATATCG _Homonota_rupicola_RUPI_1 CGGGGCTAGATGTCATGGGCTTAGCTTT-AATTGTGCGTGCCTGATATCG Homonota_spb_MNHNP_11406 CGGGGCTAGACGTCGTGGGCTAAAGGT-GGGGGGGGTGTGCCTGATATCA Homonota_spb_MNHNP_11409 CGGGGCTAGACGTCGTGGGCTAAAGGT-GGGGGGGGTGTGCCTGATATCA Homonota_taragui_LJAMMCNP_14419 CGGGGCTAGATGTCATGGGCTTGGCTTTAAATTGCGCGTGCCTGATATCG Homonota_taragui_LJAMMCNP_14420 CGGGGCTAGATGTCATGGGCTTGGCTTTAAATTGCGCGTGCCTGATATCG Homonota_uruguayensis_UFRGS_1568 CGTGGCTAGACGTCGTGGGCTA-------AGCTGTGTGTGCCTGATGTCA Homonota_uruguayensis_UFRGS_2140 CGTGGCTAGACGTCGTGGGCTA-------AGCTGTGTGTGCCTGATGTCA Homonota_whitii_LJAMMCNP_14387 CGAAGCTAGACGTCGTGGGCA--------AAGCGTGTGTGCCTGATGTCA Homonota_whitii_LJAMMCNP_14388 CGAAGCTAGACGTCGTGGGCA--------AAGCGTGTGTGCCTGATGTCA Homonota_williamsii_LJAMMCNP_4467 CGAAGCTAGGCGTTGTGGGCAAAA-----ACATGTGTGTGCCTGATGCCG Homonota_williamsii_LJAMMCNP_6517 CGAAGCTAGGCGTTGTGGGCAAAA-----ACATGTGTGTGCCTGATGCCG Garthia_gaudichaudi_IBEG1_1 CAAAGCAAGGCGTTGTGGGCTGCT-----TTGGTGCGCCTGATGCCCGCT Garthia_gaudichaudi_IBEG1_2 CAAAGCAAGGCGTTGTGGGCT--------GCTTTGGCGCGCCTGATGCCC Gymnodactylus_geckoides_LG_1050 CATGGCTAGGCGTCTTGGGCA--------AAATGTG-GTGCCTGATGCCT Gymnodactylus_geckoides_LG_911 CATGGCTAGGCGTCTTGGGCA--------CAATGTG-GTGCCTGATGCCT Phyllopezus_pollicaris_CHUNB_57388 CAAAGCAAGGTGTTATGGGMTAC------ATGAGTGTGTGCCTGATACCT Phyllodactylus_kofordi_TG_266 CAGGGCTGGGCGTCGTAGGCT--------ACCTGGGTGTGCCTGATGCCG Homonota_andicola_LJAMMCNP_12493 TCTCCTAGTCTAGGTT--AAGTAGGCTAA------TGGGA----TTG-GG Homonota_andicola_LJAMMCNP_12495 TCTCCTAGTCTAGGTT--AAGTAGGCTAA------TGGGA----TTG-GG Homonota_borellii_LJAMMCNP_12116 TCTCCTGGCCTAGGTT--GTGCGGGGTAGGCTGTCTGGGG----TTG-GG Homonota_borellii_LJAMMCNP_12125 TCTCCTGGCCTAGGTT--GTGCGGGGTAGGCTGTCTGGGG----TTG-GG Homonota_darwinii_LJAMMCNP_11424 TCTCCTGGTCTAGATT--GAGTAGACGGG------TGGGG----CTG-GG Homonota_darwinii_LJAMMCNP_11432 TCTCCTGGTCTAGATT--GAGTAGACGGG------TGGGG----CTG-GG Homonota_spa_LJAMMCNP_10577 TCTCCTGGTCTAGTTTTGGGGTAGACTTC------TGGGG----CTG-GG Homonota_spa_LJAMMCNP_5047 TCTCCTGGTCTAGTTTTGGGGTAGACTTC------TGGGG----CTG-GG Homonota_rupicola_RUPI_2 TCTCCTGGCCTAGGTT---TATAGGTAGGCTTATCTGGGG----TTG-GG _Homonota_rupicola_RUPI_1 TCTCCTGGCCTAGGTT---TATAGGTAGGCTTATCTGGGG----TTG-GG Homonota_spb_MNHNP_11406 TCTCCTGGTCTAGTTTTAGGGTAGACTTC------TGGGG----TTG-GG Homonota_spb_MNHNP_11409 TCTCCTGGTCTAGTTTTAGGGTAGACTTC------TGGGG----TTG-GG Homonota_taragui_LJAMMCNP_14419 TCTCCTGGCCTAGGTT---GGTGGGTAGGCTTGT-TGGGG----CTG-GG Homonota_taragui_LJAMMCNP_14420 TCTCCTGGCCTAG????????????????????????????????????? Homonota_uruguayensis_UFRGS_1568 TCTCCTGGCCTAGGTT--GTTCGGGGTAGGCTGTCTGGGG----TTG-GG Homonota_uruguayensis_UFRGS_2140 TCTCCTGGCCTAGGTT--GTTCGGGGTAGGCTGTCTGGGG----TTG-GG Homonota_whitii_LJAMMCNP_14387 TCTCCTAGTCTAGGTT--TAGTAGGCTAA------TGGGG----TTG-GG Homonota_whitii_LJAMMCNP_14388 TCTCCTAGTCTAGGTT--TAGTAGGCTAA------TGGGG----CTG-GG Homonota_williamsii_LJAMMCNP_4467 TCTCCTGGTCTAGGTT--GAGTAGATTGG------TGGGG----TTG-GG Homonota_williamsii_LJAMMCNP_6517 TCTCCTGGTCTAGGTT--GAGTAGATTGG------TGGGG----TTG-GG Garthia_gaudichaudi_IBEG1_1 CC???????????????????????????????????????????????? Garthia_gaudichaudi_IBEG1_2 GCTCCAGGCCTAGCGG---TGTAGGGTGG------TGGGC----TTT-AG Gymnodactylus_geckoides_LG_1050 GCTCCGGCTCTAGTGG---GGTAGAGGGG------GGGGGGCCTGTGTGG Gymnodactylus_geckoides_LG_911 GCTCCGGCTCTAGTGG---GGTAGA--GG------GGGGGGCCTGTGTGG Phyllopezus_pollicaris_CHUNB_57388 TCTCCAGGTGTGGTAT--GAGCAAACTGG------AGGGT----TTT-GG Phyllodactylus_kofordi_TG_266 CTTCCAGGGTTGGCTA----GCAGGTTGC------TGGGC----TTGTGG Homonota_andicola_LJAMMCNP_12493 CACGGGGCTGTGGAGGCTTGCATGTGTAGTCATGGCAAAAAACAATAGTA Homonota_andicola_LJAMMCNP_12495 CACGGGGCTGTGGAGGCTTGCATGTGTAGTCATGGCAAAAAACAATAGTA Homonota_borellii_LJAMMCNP_12116 CACGG????????????????????????????????????????????? Homonota_borellii_LJAMMCNP_12125 CACGGGGTTGGGGAGGCTTGCATGTGTAATTGTGGCCTAAAACAATAGTA Homonota_darwinii_LJAMMCNP_11424 CACGGGGATGTGGAGGCTTGCATGTGTAGTGCTGGTAAAAAACAATGGTA Homonota_darwinii_LJAMMCNP_11432 CACGGGGATGTGGAGGCT???????????????????????????????? Homonota_spa_LJAMMCNP_10577 CACGGGGTTGTGGAGACTTGCATGTGTAATAGTGGCCAAAAACAATAGTA Homonota_spa_LJAMMCNP_5047 CACGGGGTTGTGGAGACTTGCATGTGTAATAGTGGCCAAAAACAATAGTA Homonota_rupicola_RUPI_2 CACGGGGTTGCGGAGGCTTGCATGTGTAATTTAGGCCTAAAACAATAGTA _Homonota_rupicola_RUPI_1 CACGGGGTTGCGGAGGCTTGCATGTGTAATTTAGGCCTAAAACAATAGTA Homonota_spb_MNHNP_11406 CACGGGGGTGTGGAGGCTTGCATGTGTAATAGCGGCCAAAAACAATAGTA Homonota_spb_MNHNP_11409 CACGGGGGTGTGGAGGCTTGCATGTGTAATAGCGGCCAAAAACAATAGTA Homonota_taragui_LJAMMCNP_14419 CACGGGGTTGTGGAGGCTTGCATGTGTAATTTAGGCTTAAAACAATAGTA Homonota_taragui_LJAMMCNP_14420 ?????????????????????????????????????????????????? Homonota_uruguayensis_UFRGS_1568 CACGGGGTTGTGGAGGCTTGCATGTGTAATTGTGGCCT???????????? Homonota_uruguayensis_UFRGS_2140 CACGGGGTTGTGGAGGCTTGCATGTGTAATTGTGGCCTAAAACAATAGTA Homonota_whitii_LJAMMCNP_14387 CACGGGGCTGTGGAGGCTTGCATGTGTAGTCATGGCAAAAAACAATAGTA Homonota_whitii_LJAMMCNP_14388 CACGGGGCTGTGGAGGCTTGCATGTGTAGTCATGGCAAAAAACAATAGTA Homonota_williamsii_LJAMMCNP_4467 CACGGGGTTGTGGAGGCTTGCATGTGTAGGATTGGTAAAAAACAATAGTA Homonota_williamsii_LJAMMCNP_6517 CACGGGGTTGTGGAGGCTTGCATGTGTAGGATTGGTAAAAAACAATAGTA Garthia_gaudichaudi_IBEG1_1 ?????????????????????????????????????????????????? Garthia_gaudichaudi_IBEG1_2 CACTGGGCTGCGGATACTTGCATGTGTAAATGTAGCT-AAAATAACAGTA Gymnodactylus_geckoides_LG_1050 CACGGGGTTGCGGATACTTGCATGTGTAAGGCGAGTTATAAATAACAGTA Gymnodactylus_geckoides_LG_911 CACGGGGTTGCGGATACTTGCATGTGTAAGGCGAGTTATAAATAACAGTA Phyllopezus_pollicaris_CHUNB_57388 CACAGGTTGGGGGGGGATGGCAT??????????????????????????? Phyllodactylus_kofordi_TG_266 CACGGGCTTGTGGAGGCTTGCATGTGTAATGAGGGCCAAAAATAACAGTA Homonota_andicola_LJAMMCNP_12493 AGTC Homonota_andicola_LJAMMCNP_12495 AGTC Homonota_borellii_LJAMMCNP_12116 ???? Homonota_borellii_LJAMMCNP_12125 AGTC Homonota_darwinii_LJAMMCNP_11424 AGTC Homonota_darwinii_LJAMMCNP_11432 ???? Homonota_spa_LJAMMCNP_10577 AGTC Homonota_spa_LJAMMCNP_5047 AGTC Homonota_rupicola_RUPI_2 AGTC _Homonota_rupicola_RUPI_1 AGTC Homonota_spb_MNHNP_11406 AGTC Homonota_spb_MNHNP_11409 AGTC Homonota_taragui_LJAMMCNP_14419 AGTC Homonota_taragui_LJAMMCNP_14420 ???? Homonota_uruguayensis_UFRGS_1568 ???? Homonota_uruguayensis_UFRGS_2140 AGTC Homonota_whitii_LJAMMCNP_14387 AGTC Homonota_whitii_LJAMMCNP_14388 AGTC Homonota_williamsii_LJAMMCNP_4467 AGTC Homonota_williamsii_LJAMMCNP_6517 AGTC Garthia_gaudichaudi_IBEG1_1 ???? Garthia_gaudichaudi_IBEG1_2 AGTC Gymnodactylus_geckoides_LG_1050 AGTT Gymnodactylus_geckoides_LG_911 AGTT Phyllopezus_pollicaris_CHUNB_57388 ???? Phyllodactylus_kofordi_TG_266 AGTT ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 954; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 954; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 954; END; BEGIN TREES; Title 12S_ML; ID 015b9ed6c1ab66; LINK Taxa = 12S; TRANSLATE [0] n0 Homonota_andicola_LJAMMCNP_12493, [1] n1 Homonota_andicola_LJAMMCNP_12495, [2] n2 Homonota_borellii_LJAMMCNP_12116, [3] n3 Homonota_borellii_LJAMMCNP_12125, [4] n4 Homonota_darwinii_LJAMMCNP_11424, [5] n5 Homonota_darwinii_LJAMMCNP_11432, [6] n6 Homonota_spa_LJAMMCNP_10577, [7] n7 Homonota_spa_LJAMMCNP_5047, [8] n8 Homonota_rupicola_RUPI_2, [9] n9 _Homonota_rupicola_RUPI_1, [10] n10 Homonota_spb_MNHNP_11406, [11] n11 Homonota_spb_MNHNP_11409, [12] n12 Homonota_taragui_LJAMMCNP_14419, [13] n13 Homonota_taragui_LJAMMCNP_14420, [14] n14 Homonota_uruguayensis_UFRGS_1568, [15] n15 Homonota_uruguayensis_UFRGS_2140, [16] n16 Homonota_whitii_LJAMMCNP_14387, [17] n17 Homonota_whitii_LJAMMCNP_14388, [18] n18 Homonota_williamsii_LJAMMCNP_4467, [19] n19 Homonota_williamsii_LJAMMCNP_6517, [20] n20 Garthia_gaudichaudi_IBEG1_1, [21] n21 Garthia_gaudichaudi_IBEG1_2, [22] n22 Gymnodactylus_geckoides_LG_1050, [23] n23 Gymnodactylus_geckoides_LG_911, [24] n24 Phyllopezus_pollicaris_CHUNB_57388, [25] n25 Phyllodactylus_kofordi_TG_266; TREE tree_1 = (((((n7:0.00000096358070712105,n6:0.00000096358070712105):0.03487537144169533,(n11:0.00000096358070712105,n10:0.00000096358070712105):0.07400027723068889):0.0898615908560897,(((((n12:0.0022039929068185652,n13:0.005886630959868961):0.03546281519383228,(n8:0.0023144155904584033,n9:0.00000096358070712105):0.02482135054690368):0.05515187163388235,(n2:0.00000096358070712105,n3:0.00000096358070712105):0.043212932985202505):0.02365860357840894,(n15:0.0011865074820365117,n14:0.00000096358070712105):0.057715914528110604):0.07176534389249933,(((n0:0.00000096358070712105,n1:0.0025269200304531515):0.036765348173425166,(n17:0.004043109991193946,n16:0.003062129678310239):0.0294099071707714):0.07867284753530511,((n18:0.00000096358070712105,n19:0.00000096358070712105):0.033877469305523704,(n4:0.00000096358070712105,n5:0.001273169668078736):0.03696077909474664):0.039630543480518796):0.08536725744758997):0.0181259544593288):0.12823673035176353,((n25:0.31563355315675795,(n22:0.010137041733307144,n23:0.0018223634556825555):0.36585732481892996):0.01846377912533039,(n20:0.022696716924541987,n21:0.00000096358070712105):0.3248740655825879):0.051326411508763756):0.1911666525443034,n24:0.1911666525443034); END; BEGIN TREES; Title 12S_BI; ID 015b9ed7ca9868; LINK Taxa = 12S; TRANSLATE [0] 1 Homonota_andicola_LJAMMCNP_12493, [1] 2 Homonota_andicola_LJAMMCNP_12495, [2] 3 Homonota_borellii_LJAMMCNP_12116, [3] 4 Homonota_borellii_LJAMMCNP_12125, [4] 5 Homonota_darwinii_LJAMMCNP_11424, [5] 6 Homonota_darwinii_LJAMMCNP_11432, [6] 7 Homonota_spa_LJAMMCNP_10577, [7] 8 Homonota_spa_LJAMMCNP_5047, [8] 9 Homonota_rupicola_RUPI_2, [9] 10 _Homonota_rupicola_RUPI_1, [10] 11 Homonota_spb_MNHNP_11406, [11] 12 Homonota_spb_MNHNP_11409, [12] 13 Homonota_taragui_LJAMMCNP_14419, [13] 14 Homonota_taragui_LJAMMCNP_14420, [14] 15 Homonota_uruguayensis_UFRGS_1568, [15] 16 Homonota_uruguayensis_UFRGS_2140, [16] 17 Homonota_whitii_LJAMMCNP_14387, [17] 18 Homonota_whitii_LJAMMCNP_14388, [18] 19 Homonota_williamsii_LJAMMCNP_4467, [19] 20 Homonota_williamsii_LJAMMCNP_6517, [20] 21 Garthia_gaudichaudi_IBEG1_1, [21] 22 Garthia_gaudichaudi_IBEG1_2, [22] 23 Gymnodactylus_geckoides_LG_1050, [23] 24 Gymnodactylus_geckoides_LG_911, [24] 25 Phyllopezus_pollicaris_CHUNB_57388, [25] 26 Phyllodactylus_kofordi_TG_266; TREE con_50_majrule = ((25:0.5052243,(26:0.4137076,(21:0.0321285,22:0.002970656):0.4174573,(23:0.01399427,24:0.005450849):0.4751963):0.07577445):0.09234535,(((7:0.001176726,8:0.001257569):0.05286074,(11:0.001320484,12:0.001312052):0.10257):0.1263077,((((1:0.001435707,2:0.004913233):0.05358013,(17:0.005737444,18:0.007227602):0.04352625):0.1117486,((5:0.002009574,6:0.002540609):0.05434702,(19:0.001305149,20:0.001351841):0.04990282):0.05796167):0.1203751,((15:0.001387847,16:0.002869916):0.08260195,((3:0.001298278,4:0.001228574):0.06206403,((9:0.004608548,10:0.001230636):0.03754825,(13:0.004710831,14:0.009826111):0.05057863):0.07954654):0.03537806):0.1040771):0.03231764):0.09234535); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1493021361400; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 8707660299328671279; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 3874543732941756145; mqVersion 320; checksumv 0 3 3627012722 null getNumChars 954 numChars 954 getNumTaxa 26 numTaxa 26 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 588194.0 sumSquares 4.6116860184277258E18 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 184; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1194 751; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #8707660299328671279 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #8707660299328671279; getWindow; tell It; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1010 679; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.arrow; endTell; setActive; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #8707660299328671279 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 015b9ed6c1ab66; toggleUseWeights off; endTell; setAssignedID 5731.1493018719491.3474020288845725731; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1010 679; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; makeTreeWindow #8707660299328671279 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 2; setTreeBlockID 015b9ed7ca9868; toggleUseWeights off; endTell; setAssignedID 5761.1493018722037.4292612701355126166; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1010 679; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #3874543732941756145 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 218; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1010 679; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;