#NEXUS [written Mon Apr 24 11:50:27 CEST 2017 by Mesquite version 3.2 (build 801) at HG17209/172.30.18.79] BEGIN TAXA; TITLE SINCAIP; DIMENSIONS NTAX=27; TAXLABELS Homonota_andicola_LJAMMCNP_12490 Homonota_borellii_LJAMMCNP_12125 Homonota_borellii_LJAMMCNP_5842 Homonota_darwinii_LJAMMCNP_11424 Homonota_darwinii_LJAMMCNP_9266 Homonota_spa_LJAMMCNP_10505 Homonota_spa_LJAMMCNP_5047 Garthia_gaudichaudi_IBEG1_1 Gymnodactylus_geckoides_LG_1050 Gymnodactylus_geckoides_LG_911 Phyllodactylus_kofordi_TG_266 Phyllopezus_przewalskii_LJAMMCNP_12089 Phyllopezus_pollicaris_CHUNB_57388 Homonota_rupicola_RUPI_1 Homonota_rupicola_RUPI_2 Homonota_spb_MNHNP_11406 Homonota_spb_MNHNP_11409 Homonota_taragui_LJAMMCNP_14419 Homonota_taragui_LJAMMCNP_14420 Homonota_underwoodi_LJAMMCNP_10923 Homonota_underwoodi_LJAMMCNP_10931 Homonota_uruguayensis_UFRGS_1568 Homonota_uruguayensis_UFRGS_2139 Homonota_whitii_LJAMMCNP_12110 Homonota_whitii_LJAMMCNP_14388 Homonota_williamsii_LJAMMCNP_4467 Homonota_williamsii_LJAMMCNP_6517 ; END; BEGIN CHARACTERS; TITLE SINCAIP_Matrix; DIMENSIONS NCHAR=449; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Homonota_andicola_LJAMMCNP_12490 TGAAAATGTCTGCATGCAGGAAAAGCTGTCACTAGAATTTCAGGATGTGCATGCTTCTAAAAATACAAAGAAGAGTCCTTTGGAGAAAAAGGAAATGAAACTAGCAAGATTAAAGCATCTAATGCAACGATCCCTCAGTGAGTCCGATACAGATTCGAATAATTCCGAAGATCAGAAAAACACACCTGTAAAAAGAACTGATAAGCCCAGGCCACAGCCCATTGTGGAAAATACTGAAAGCACTGAGAACTTGCACCTAATGATTAAGAAACATACTTTGGCAGCAGGGCGCCGGTTTCCTTTTGGGATTAGAGCCTCAAAATCTGTAGATGGTCACAGTCCTTCTCCCACTTCAGAAAGTAGTGATCCTGATAATGAAGCCCAGTATCAGGCTGGGACTATATCTCAGAGCCAGGTCTTTGGAGATGTCTGTCAGTCTAGCCCTGATG Homonota_borellii_LJAMMCNP_12125 ???????????????????GAAAAGCTGTCACTAGAATTTCAGGATGTGCATGCTTCTAAAAATACAAAGAAGAGTCCTTTGGAGAAAAAGGAAATGAAACTAGCAAGATTAAAGCATCTAATGCAACGATCCCTCAGTGAGTCTGATACAGATTCAAATAATTCTGAAGATCAGAAAAACACACCTGTAAAAAGAACTGATAAGCCCAGGCCACAGCCCATCGTGGAAAATACTGAAAGCACTGAGAACTTGCACCTAATGATTAAGAAACATACTTTGGCAGCAGGGCGCCGGTTTCCTTTTGGGATTAGAGCCTCAAAATCTGTAGATGGTCACAGTCCTTCTCCCACTTCAGAAAGTAGTGATCCTGATAATGAAGCCCAGTATCAGGCTGGGACTATATCTCAGAGCCAGGTCTTTGGAGATGTCTGT???????????????? Homonota_borellii_LJAMMCNP_5842 TGAAAATGTCTGCATGCAGGAAAAGCTGTCACTAGAATTTCAGGATGTGCATGCTTCTAAAAATACAAAGAAGAGTCCTTTGGAGAAAAAGGAAATGAAACTAGCAAGATTAAAGCATCTAATGCAACGATCCCTCAGTGAGTCTGATACAGATTCAAATAATTCTGAAGATCAGAAAAACACACCTGTAAAAAGAACTGATAAGCCCAGGCCACAGCCCATCGTGGAAAATACTGAAAGCACTGAGAACTTGCACCTAATGATTAAGAAACATACTTTGGCAGCAGGGCGCCGGTTTCCTTTTGGGATTAGAGCCTCAAAATCTGTAGATGGTCACAGTCCTTCTCCCACTTCAGAAAGTAGTGATCCTGATAATGAAGCCCAGTATCAGGCTGGGACTATATCTCAGAGCCAGGTCTTTGGAGATGTCTGTCAGTCTAGCCCTGATG Homonota_darwinii_LJAMMCNP_11424 TGAAAATGTCTGCACGCAGGAAAAGCTGTCACTAGAATTTCAGGATGTGCATGCTTCTAAAAATACAAAGAAGAGTCCTTTGGAGAAAAAGGAAATGAAACTAGCAAGATTAAAGCATCTAATGCAACGATCCCTCAGTGAGTCCGATACAGATTCGAATAATTCCGAAGATCAGAAAAACACACCTGTAAAAAGAACTGATAAGCCCAGGCCACAGCCCATTGTGGAAAATACTGAAAGCACTGAGAACCTGCACCTAATGATTAAGAAACATACTTTGGCAGCAGGGCGCCGGTTTCCTTTTGGGATTAGAGCCTCAAAATCTGTAGATGGTCACAGTCCTTCTCCCACTTCAGAAAGTAGTGATCCTGATAATGAAGCCCAGTATCAGGCTGGGACTATATCTCAGAGCCAGGTCTTTGGAGATGTCTGTCAGTCTAGCCCTGATG Homonota_darwinii_LJAMMCNP_9266 TGAAAATGTCTGCATGCAGGAAAAGCTGTCACTAGAATTTCAGGATGTGCATGCTTCTAAAAATACAAAGAAGAGTCCTTTGGAGAAAAAGGAAATGAAACTAGCAAGATTAAAGCATCTAATGCAACGATCCCTCAGTGAGTCCGATACAGATTCGAATAATTCCGAAGATCAGAAAAACACACCTGTAAAAAGAACTGATAAGCCCAGGCCACAGCCCATTGTGGAAAATACTGAAAGCACTGAGAACTTRCACCTAATGATTAAGAAACATACTTTGGCAGCAGGGCGCCGGTTTCCTTTTGGGATTAGAGCCTCAAAATCTGTAGATGGTCACAGTCCTTCTCCCACTTCAGAAAGTAGTGATCCTGATAATGAAGCCCAGTATCAGGCTGGGACTATATCTCAGAGCCAGGTCTTTGGAGATGTCTGTCAGTCTAGCCCTGATG Homonota_spa_LJAMMCNP_10505 TGAAAATGTCTGCATGCAGGAAAAGCTGTCACTAGAATTTCAGGATGTGCATGCTTCTAAAAATACAAAGAAGAGTCCTTTGGAAAAAAAGGAAATGAAACTAGCAAGATTAAAGCATCTAATGCAACGATCCCTCAGTGAGTCCGATACAGATTCGAATAATTCTGAAGATCAGAAAAACACACCTGTAAAAAGAACTGATAAGCCCAGGCCACAGCCCATTGTGGAAAATACTGAAAGCACTGAGAACTTGCACCTAATGATTAAGAAGCATACTTTGGCAGCAGGGCGCCGGTTTCCTTTTGGGATTAGAGCCTCAAAATCTGTAGATGGTCACAGTCCTTCTCCCACTTCAGAAAGTAGTGATCCTGATAATGAAGCCCAGTATCAGGCTGGGACTATATCTCAGAGCCAGGTCTTTGGAGATGTCTGTCAGTCTAGYCCTGATG Homonota_spa_LJAMMCNP_5047 TGAAAATGTCTGCATGCAGGAAAAGCTGTCACTAGAATTTCAGGATGTGCATGCTTCTAAAAATACAAAGAAGAGTCCTTTGGAAAAAAAGGAAATGAAACTAGCAAGATTAAAGCATCTAATGCAACGATCCCTCAGTGAGTCCGATACAGATTCGAATAATTCTGAAGATCAGAAAAACACACCTGTAAAAAGAACTGATAAGCCCAGGCCACAGCCCATTGTGGAAAATACTGAAAGCACTGAGAACTTGCACCTAATGATTAAGAAGCATACTTTGGCAGCAGGGCGCCGGTTTCCTTTTGGGATTAGAGCCTCAAAATCTGTAGATGGTCACAGTCCTTCTCCCACTTCAGAAAGTAGTGATCCTGATAATGAAGCCCAGTATCAGGCTGGGACTATATCTCAGAGCCAGGTCTTTGGAGATGTCTGTCAGTCTAGTCCTGATG Garthia_gaudichaudi_IBEG1_1 TGAGAATGTCTGCATGCAGGAAAAGCTGTCACTAGAATTTCAGGATGTGCATGCTTCTAAAAATACAAAGAAGAGTCCTTTGGAGAAAAAGGAAATGAAAGTAGCAAGATTGAAGCATCTAATGCAACGATCCCTCAGTGAGTCTGATACAGATTCAAATAATTCTGAAGATCAGAAGAACACACCTGTGAAAAGAACTGATAAGCCCAGGCCGCAGCCCATCGTGGAAAACATTGAAAGCACTGAGAACTTGCACCTAATGATTAAGAAACACACTTCGGCAGCAGGGCGCCGGTTTCCTTTTGGGATTAGAACCTCAAAATCTGTAGATGGTCACAGCCCTTCTCCCACTTCAGAAAGTAGTGATCCTGATAATGAAGCCCAGTATCAGATTGGGACTGTATCTCARAGCCAGGTCTTGGGAGATTCCTGTCAGTCTAGCCCTGATG Gymnodactylus_geckoides_LG_1050 TGAGAATGTCTGCATGCAGGAAAAACTGTCACTAGAATTTCAGGATGTGCATGCTTCTAGAAATACAAGGAAGAGTCCTTTGGAGAAAAAGGAAATGAAACTAGCAAGATTGAAGCATCTAATGCAACGCTCCCTCAGTGAGTCTGATACAGATTCAAATAATTCTGAAGATCAAAAGAACACACCTGTGAAAAGAACTGATAAACCCAGGCCACAGCCCATTGTGGAAAACACTGAAAGCACTGAAAACTTGCACCTAATGATTAAGAAACACACTTTGGCAGCAGGGCACCGCTTTCCTTTTGGGATCAGAGCCTCAAAATCTGTAGATGGTCACAGCCCTTCTCCCACTTCAGAAAGTAGTGATCCTGATAATGAAGCCCAGTATCAGACTGGGACTATATCTCAGAGCCAGATATTAGGAGATGCCTGTCAGTCTAGCCCTGATA Gymnodactylus_geckoides_LG_911 TGAGAATGTCTGCATGCAGGAAAAACTGTCACTAGAATTTCAGGATGTGCATGCTTCTAGAAATACAAGGAAGAGTCCTTTGGAGAAAAAGGAAATGAAACTAGCAAGATTGAAGCATCTAATGCAACGCTCCCTCAGTGAGTCTGATACAGATTCAAATAATTCTGAAGATCAAAAGAACACACCTGTGAAAAGAACTGATAAACCCAGGCCACAGCCCATTGTGGAAAACACTGAAAGCACTGAAAACTTGCACCTAATGATTAAGAAACACACTTTGGCAGCAGGGCACCGCTTTCCTTTTGGGATCAGAGCCTCAAAATCTGTAGATGGTCACAGCCCTTCTCCCACTTCAGAAAGTAGTGATCCTGATAATGAAGCCCAGTATCAGACTGGGACTATATCTCAGAGCCAGATATTAGGAGATGCCTGTCAGTCTAGCCCTGATA Phyllodactylus_kofordi_TG_266 TGAGAATGTCTGCATGCAGGAAAAGCTGTCACTAGAATTTCAGGATGTGCATGCTTCTAAAAATACAAAGAAGAGTCCTTTGGAGAAAAAGGAAATGAAACTAGCAAGACTGAAGCATCTAATGCAACGATCTCTCAGTGAGTCTGATACAGATTCGAATAATTCTGAAGATCAGAAAAACACACCTGTGAAAAGAACTGATAAGCCCAGGCCACAGCCCATTGTGGAAAACACTGAAAGCACTGAGAACTTGCACCTAATGATTAAGAAACATACTTTGGCAGCAGGGCGCCGGTTTCCTTTCGGGATTAGAGCCTCAAAATCTGTAGATGGTCACAGCCCTTCTCCCACTTCAGAAAGCAGTGATCCGGATAATGAAGCCCAGTATCAGACTGGGACTATATCTCAGAGCCAGGTCTTTGGAGATGCCTGTCAAACTAGCCCTGATG Phyllopezus_przewalskii_LJAMMCNP_12089 TGAGAATGTCTGCATGCAGGAAAAGCTGTCACTAGAATTTCAGGATGTGCATGCTTCTAGAAATACAAAGAAGAATCCTTTGGAGAAAAAGGAAATGAAACCAGCAAGATTGAAGCATCTAATGCAACGATCCCTCAGTGAGTCTGATACAGATTCGAATAATTCTGAAGATCAGAAGAACACACCTGTGAAAAGAACTGATAAACCCAGGCCACATCCCATCGTGGAAAACATGGAAAGCACTGAAAACTTGCACCTAATGATTAAGAAACACACTTTGGCAGCAGGGCGCCGTTTTCCTTTTGGGATTAGAGCTTCAAAATCTGTAGATGGTCACAGCCCTTCTCCCACTTCAGAAAGTAGTGATCCTGATAATGAAGTCCAGTATCAGACTGGGACTATATATCAGAACCAGGTCTTGGGAGATGCCTGTCAATCTAGCCCTGATG Phyllopezus_pollicaris_CHUNB_57388 TGAGAATGTCTGCATGCAGGAAAAGCTGTCACTAGAATTTCAGGATGTGCATGCTTCTAGAAATACAAAGAAGAATCCTTTGGAGAAAAAGGAAATGAAACTAGCAAGATTGAAGCATCTAATGCAACGATCCCTCAGTGAGTCTGATACAGATTCGAATAATTCTGAAGATCAGAAGAACACACCTGTGAAAAGAACTGATAAACCCAGGCCACAGCCCATCGTGGAAAACATGGAAAGCACTGAAAACTTGCACCTAATGATTAAGAAACACACTTTGGCAGCAGGGCACCGTTTTCCTTTTGGGATTAGAGCTTCAAAATCTTTAGATGGTCACAGCCCTTCTCCCACTTCAGAAAGTAGTGATCCTGATAATGAAGTCCAGTATCAAACTGGGACTATATCTCAGAGCCAGGTCTTGGGAGATGCCTGTCAGTCTAGCCCTGATG Homonota_rupicola_RUPI_1 TGAAAATGTCTGCATGCAAGAAAAGCTGTCACTAGAATTTCAGGATGTGCATGCTTCTAAAAATACAAAGAAGAGTCCTTTGGAGAAAAAGGAAATGAAACTAGCAAGATTAAAGCATCTAATGCAACGATCCCTCAGTGAGTCTGATACAGATTCGAATAATTCTGAAGATCAGAAAAACACACCTGTAAAAAGAACTGATAAGCCCAGGCCACAGCCCATCGTGGAAAATACTGAAAGCACTGAGAACTTGCACCTAATGATTAAGAAACATACTTTGGCAGCAGGGCGCCGGTTTCCTTTTGGGATTAGAGCCTCAAAATCTGTAGATGGTCACAGTCCTTCTCCCACTTCAGAAAGTAGTGATCCTGATAATGAAGCCCAGTATCAGGCTGGGACTATATCTCAGAGCCAGGTCTTTGGAGATGTCTGTCAGTCTAGCCCTGATG Homonota_rupicola_RUPI_2 TGAAAATGTCTGCATGCAAGAAAAGCTGTCACTAGAATTTCAGGATGTGCATGCTTCTAAAAATACAAAGAAGAGTCCTTTGGAGAAAAAGGAAATGAAACTAGCAAGATTAAAGCATCTAATGCAACGATCCCTCAGTGAGTCTGATACAGATTCGAATAATTCTGAAGATCAGAAAAACACACCTGTAAAAAGAACTGATAAGCCCAGGCCACAGCCCATCGTGGAAAATACTGAAAGCACTGAGAACTTGCACCTAATGATTAAGAAACATACTTTGGCAGCAGGGCGCCGGTTTCCTTTTGGGATTAGAGCCTCAAAATCTGTAGATGGTCACAGTCCTTCTCCCACTTCAGAAAGTAGTGATCCTGATAATGAAGCCCAGTATCAGGCTGGGACTATATCTCAGAGCCAGGTCTTTGGAGATGTCTGTCAGTCTAGCCCTGATG Homonota_spb_MNHNP_11406 TGAAAATGTCTGCATGCAGGAAAAGCTGTCACTAGAATTTCAGGATGTGCATGCTTCTAAAAATACAAAGAAGAGTCCTTTGGAAAAAAAGGAAATGAAACTAGCAAGATTAAAGCATCTAATGCAACGATCCCTCAGTGAGTCYGATACAGATTCGAATAATTCTGAAGATCAGAAAAACACACCTGTAAAAAGAACTGATAAGCCCAGGCCACAGCCCATTGTGGAAAATACTGAAAGCACTGAGAACTTGCACCTAATGATTAAGAAGCATACTTTGGCAGCAGGGCGCCGGTTTCCTTTTGGGATTAGAGCCTCAAAATCTGTAGATGGTCACAGTCCTTCTCCGACTTCAGAAAGTAGTGATCCTGATAATGAAGCCCAGTATCAGGCTGGGACTATATCTCAGAGCCAGGTCTTTGGAGATGTCTGTCAGTCTAGCCCTGATG Homonota_spb_MNHNP_11409 TGAAAATGTCTGCATGCAGGAAAAGCTGTCACTAGAATTTCAGGATGTGCATGCTTCTAAAAATACAAAGAAGAGTCCTTTGGAAAAAAAGGAAATGAAACTAGCAAGATTAAAGCATCTAATGCAACGATCCCTCAGTGAGTCCGATACAGATTCGAATAATTCTGAAGATCAGAAAAACACACCTGTAAAAAGAACTGATAAGCCCAGGCCACAGCCCATTGTGGAAAATACTGAAAGCACTGAGAACTTGCACCTAATGATTAAGAAGCATACTTTGGCAGCAGGGCGCCGGTTTCCTTTTGGGATTAGAGCCTCAAAATCTGTAGATGGTCACAGTCCTTCTCCGACTTCAGAAAGTAGTGATCCTGATAATGAAGCCCAGTATCAGGCTGGGACTATATCTCAGAGCCAGGTCTTTGGAGATGTCTGTCAGTCTAGYCCTGATG Homonota_taragui_LJAMMCNP_14419 TGAAAATGTCTGCATGCAGGAAAAGCTGTCACTAGAATTTCAGGATGTGCATGCTTCTAAAAATACAAAGAAGAGTCCTTTGGAGAAAAAGGAAATGAAACTAGCAAGATTAAAGCATCTAATGCAACGATCCCTCAGTGAGTCTGATACAGATTCAAATAATTCTGAAGATCAGAAAAACACACCTGTAAAAAGAACTGATAAGCCCAGGCCACAGCCCATCGTGGAAAATACTGAAAGCACTGAGAACTTGCACCTAATGATTAAGAAACATACTTTGGCAGCAGGGCGCCGGTTTCCTTTTGGGATTAGAGCCTCAAAATCTGTAGATGGTCACAGTCCTTCTCCCACTTCAGAAAGTAGTGATCCTGATAATGAAGCCCAGTATCAGGCTGGGACTATATCTCAGAGCCAGGTCTTTGGAGATGTCTGTCAGTCTAGCCCTGATG Homonota_taragui_LJAMMCNP_14420 TGAAAATGTCTGCATGCAGGAAAAGCTGTCACTAGAATTTCAGGATGTGCATGCTTCTAAAAATACAAAGAAGAGTCCTTTGGAGAAAAAGGAAATGAAACTAGCAAGATTAAAGCATCTAATGCAACGATCCCTCAGTGAGTCTGATACAGATTCAAATAATTCTGAAGATCAGAAAAACACACCTGTAAAAAGAACTGATAAGCCCAGGCCACAGCCCATCGTGGAAAATACTGAAAGCACTGAGAACTTGCACCTAATGATTAAGAAACATACTTTGGCAGCAGGGCGCCGGTTTCCTTTTGGGATTAGAGCCTCAAAATCTGTAGATGGTCACAGTCCTTCTCCCACTTCAGAAAGTAGTGATCCTGATAATGAAGCCCAGTATCAGGCTGGGACTATATCTCAGAGCCAGGTCTTTGGAGATGTCTGTCAGTCTAGCCCTGATG Homonota_underwoodi_LJAMMCNP_10923 TGAAAATGTCTGCATGCAGGAAAAGCTGTCACTAGAATTTCAGGATGTGCATGCTTCTAAAAATACAAAGAAGAGTCCTTTGGAGAAAAAGGAAATGAAACTAGCAAGATTAAAGCATCTAATGCAACGATCCCTCAGTGAGTCCGATACAGATTCGAATAATTCTGAAGATCAGAAAAACACACCTGTAAAAAGAACTGATAAGCCCAGGCCACAGCCCATTGTGGAAAATACTGAAAGCACTGAGAACTTGCACCTAATGATTAAGAAACATACTTTGGCAGCAGGGCGCCGGTTTCCTTTTGGGATTAGAGCCTCAAAATCTGTAGATGGTCACAGTCCTTCTCCCACTTCAGAAAGTAGTGATCCTGATAATGAAGCCCAGTATCAGGCTGGGACTATATCTCAGAGCCAGGTCTTTGGAGATGTCTGTCAGTCTAGCCCTGATG Homonota_underwoodi_LJAMMCNP_10931 TGAAAATGTCTGCATGCAGGAAAAGCTGTCACTAGAATTTCAGGATGTGCATGCTTCTAAAAATACAAAGAAGAGTCCTTTGGAGAAAAAGGAAATGAAACTAGCAAGATTAAAGCATCTAATGCAACGATCCCTCAGTGAGTCCGATACAGATTCGAATAATTCTGAAGATCAGAAAAACACACCTGTAAAAAGAACTGATAAGCCCAGGCCACAGCCCATTGTGGAAAATACTGAAAGCACTGAGAACTTGCACCTAATGATTAAGAAACATACTTTGGCAGCAGGGCGCCGGTTTCCTTTTGGGATTAGAGCCTCAAAATCTGTAGATGGTCACAGTCCTTCTCCCACTTCAGAAAGTAGTGATCCTGATAATGAAGCCCAGTATCAGGCTGGGACTATATCTCAGAGCCAGGTCTTTGGAGATGTCTGTCAGTCTAGCCCTGATG Homonota_uruguayensis_UFRGS_1568 TGAAAATGTCTGCATGCAGGAAAAGCTGTCACTAGAATTTCAGGATGTGCATGCTTCTAAAAATACAAAGAAGAGTCCTTTGGAGAAAAAGGAAATGAAACTAGCAAGATTAAAGCATCTAATGCAACGATCCCTCAGTGAGTCTGATACAGATTCGAATAATTCTGAAGATCAGAAAAACACACCTGTAAAAAGAACTGATAAGCCCAGGCCACAGCCCATCGTGGAAAATACTGAAAGCACTGAGAACTTGCACCTAATGATTAAGAAACATGCTTTGGCAGCAGGGCGCCGCTTTCCTTTTGGGATTAGAGCCTCAAAATCTGTAGATGGTCACAGTCCCTCTCCCACTTCAGAAAGCAGTGATCCTGATAATGAAGCCCAGTATCAGGCTGGGACTATATCTCAGAGCCAGGTCTTTGGAGATGTCTGTCAGTCTAGCCCTGATG Homonota_uruguayensis_UFRGS_2139 TGAAAATGTCTGCATGCAGGAAAAGCTGTCACTAGAATTTCAGGATGTGCATGCTTCTAAAAATACAAAGAAGAGTCCTTTGGAGAAAAAGGAAATGAAACTAGCAAGATTAAAGCATCTAATGCAACGATCCCTCAGTGAGTCTGATACAGATTCGAATAATTCTGAAGATCAGAAAAACACACCTGTAAAAAGAACTGATAAGCCCAGGCCACAGCCCATCGTGGAAAATACTGAAAGCACTGAGAACTTGCACCTAATGATTAAGAAACATGCTTTGGCAGCAGGGCGCCGCTTTCCTTTTGGGATTAGAGCCTCAAAATCTGTAGATGGTCACAGTCCCTCTCCCACTTCAGAAAGCAGTGATCCTGATAATGAAGCCCAGTATCAGGCTGGGACTATATCTCAGAGCCAGGTCTTTGGAGATGTCTGTCAGTCTAGCCCTGATG Homonota_whitii_LJAMMCNP_12110 TGAAAATGTCTGCATGCAGGAAAAGCTGTCACTAGAATTTCAGGATGTGCATGCTTCTAAAAATACAAAGAAGAGTCCTTTGGAGAAAAAGGAAATGAAACTAGCAAGATTAAAGCATCTAATGCAACGATCCCTCAGTGAGTCCGATACAGATTCGAATAATTCYGAAGATCAGAAAAACACACCTGTAAAAAGAACTGATAAGCCCAGGCCACAGCCCATTGTGGAAAATACTGAAAGCACTGAGAACTTGCACCTAATGATTAAGAAACATACTTTGGCAGCAGGGCGCCGGTTTCCTTTTGGGATTAGAGCCTCAAAATCTGTAGATGGTCACAGTCCTTCTCCCACTTCAGAAAGTAGTGATCCTGATAATGAAGCCCAGTATCAGGCTGGGACTATATCTCAGAGCCAGGTCTTTGGAGATGTCTGTCAGTCTAGTCCTGATG Homonota_whitii_LJAMMCNP_14388 TGAAAATGTCTGCATGCAGGAAAAGCTGTCACTAGAATTTCAGGATGTGCATGCTTCTAAAAATACAAAGAAGAGTCCTTTGGAGAAAAAGGAAATGAAACTAGCAAGATTAAAGCATCTAATGCAACGATCCCTCAGTGAGTCCGATACAGATTCGAATAATTCCGAAGATCAGAAAAACACACCTGTAAAAAGAACTGATAAGCCCAGGCCACAGCCCATTGTGGAAAATACTGAAAGCACTGAGAACTTGCACCTAATGATTAAGAAACATACTTTGGCAGCAGGGCGCCGGTTTCCTTTTGGGATTAGAGCCTCAAAATCTGTAGATGGTCACAGTCCTTCTCCCACTTCAGAAAGTAGTGATCCTGATAATGAAGCCCAGTATCAGGCTGGGACTATATCTCAGAGCCAGGTCTTTGGAGATGTCTGTCAGTCTAGTCCTGATG Homonota_williamsii_LJAMMCNP_4467 TGAAAATGTCTGCACGCAGGAAAAGCTGTCACTAGAATTTCAGGATGTGCATGCTTCTAAAAATACAAAGAAGAGTCCTTTGGAGAAAAAGGAAATGAAACTAGCAAGATTAAAGCATCTAATGCAACGATCCCTCAGTGAGTCCGATACAGATTCGAATAATTCCGAAGATCAGAAAAACACACCTGTAAAAAGAACTGATAAGCCCAGGCCACAGCCCATTGTGGAAAATACTGAAAGCACTGAGAACTTGCACCTAATGATTAAGAAACATACTTTGGCAGCAGGGCGCCGGTTTCCTTTTGGGATTAGAGCCTCAAAATCTGTAGATGGTCACAGTCCTTCTCCCACTTCAGAAAGTAGTGATCCTGATAATGAAGCCCAGTATCAGGCTGGGACTATATCTCAGAGCCAGGTCTTTGGAGATGTCTGTCAGTCTAGCCCTGATG Homonota_williamsii_LJAMMCNP_6517 TGAAAATGTCTGCAYGCAGGAAAAGCTGTCACTAGAATTTCAGGATGTGCATGCTTCTAAAAATACAAAGAAGAGTCCTTTGGAGAAAAAGGAAATGAAACTAGCAAGATTAAAGCATCTAATGCAACGATCCCTCAGTGAGTCCGATACAGATTCGAATAATTCCGAAGATCAGAAAAACACACCTGTAAAAAGAACTGATAAGCCCAGGCCACAGCCCATTGTGGAAAATACTGAAAGCACTGAGAACTTGCACCTAATGATTAAGAAACATACTTTGGCAGCAGGGCGCCGGTTTCCTTTTGGGATTAGAGCCTCAAAATCTGTAGATGGTCACAGTCCTTCTCCCACTTCAGAAAGTAGTGATCCTGATAATGAAGCCCAGTATCAGGCTGGGACTATATCTCAGAGCCAGGTCTTTGGAGATGTCTGTCAGTCTAGCCCTGATG ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 449; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 449; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 449; END; BEGIN TREES; Title SINCAIP_BI; ID 015b7b584c2313; LINK Taxa = SINCAIP; TRANSLATE [0] 1 Homonota_andicola_LJAMMCNP_12490, [1] 2 Homonota_borellii_LJAMMCNP_12125, [2] 3 Homonota_borellii_LJAMMCNP_5842, [3] 4 Homonota_darwinii_LJAMMCNP_11424, [4] 5 Homonota_darwinii_LJAMMCNP_9266, [5] 6 Homonota_spa_LJAMMCNP_10505, [6] 7 Homonota_spa_LJAMMCNP_5047, [7] 8 Garthia_gaudichaudi_IBEG1_1, [8] 9 Gymnodactylus_geckoides_LG_1050, [9] 10 Gymnodactylus_geckoides_LG_911, [10] 11 Phyllodactylus_kofordi_TG_266, [11] 12 Phyllopezus_przewalskii_LJAMMCNP_12089, [12] 13 Phyllopezus_pollicaris_CHUNB_57388, [13] 14 Homonota_rupicola_RUPI_1, [14] 15 Homonota_rupicola_RUPI_2, [15] 16 Homonota_spb_MNHNP_11406, [16] 17 Homonota_spb_MNHNP_11409, [17] 18 Homonota_taragui_LJAMMCNP_14419, [18] 19 Homonota_taragui_LJAMMCNP_14420, [19] 20 Homonota_underwoodi_LJAMMCNP_10923, [20] 21 Homonota_underwoodi_LJAMMCNP_10931, [21] 22 Homonota_uruguayensis_UFRGS_1568, [22] 23 Homonota_uruguayensis_UFRGS_2139, [23] 24 Homonota_whitii_LJAMMCNP_12110, [24] 25 Homonota_whitii_LJAMMCNP_14388, [25] 26 Homonota_williamsii_LJAMMCNP_4467, [26] 27 Homonota_williamsii_LJAMMCNP_6517; TREE con_50_majrule = ((11:0.02666276,(8:0.02688652,((9:0.002317317,10:0.00232987):0.04118447,(12:0.01840091,13:0.01026845):0.01810619):0.01489467):0.01349854):0.011807905,((14:0.002367313,15:0.002271336):0.005314149,(22:0.002317383,23:0.002339781):0.01414725,(2:0.00245267,3:0.002258367,18:0.002310061,19:0.002331344):0.005221735,(20:0.002325978,21:0.002377271,(6:0.002285272,7:0.004434843,(16:0.002371844,17:0.002327673):0.005541515):0.008462903,(1:0.002318182,5:0.002339502,27:0.002307383,(4:0.005428661,26:0.002373419):0.005095224,(24:0.002387833,25:0.002486682):0.005364654):0.00539012):0.008064653):0.011807905); END; BEGIN TREES; Title SINCAIP_ML; ID 015b817255f76; LINK Taxa = SINCAIP; TRANSLATE [0] 1 Homonota_andicola_LJAMMCNP_12490, [1] 2 Homonota_borellii_LJAMMCNP_12125, [2] 3 Homonota_borellii_LJAMMCNP_5842, [3] 4 Homonota_darwinii_LJAMMCNP_11424, [4] 5 Homonota_darwinii_LJAMMCNP_9266, [5] 6 Homonota_spa_LJAMMCNP_10505, [6] 7 Homonota_spa_LJAMMCNP_5047, [7] 8 Garthia_gaudichaudi_IBEG1_1, [8] 9 Gymnodactylus_geckoides_LG_1050, [9] 10 Gymnodactylus_geckoides_LG_911, [10] 11 Phyllodactylus_kofordi_TG_266, [11] 12 Phyllopezus_przewalskii_LJAMMCNP_12089, [12] 13 Phyllopezus_pollicaris_CHUNB_57388, [13] 14 Homonota_rupicola_RUPI_1, [14] 15 Homonota_rupicola_RUPI_2, [15] 16 Homonota_spb_MNHNP_11406, [16] 17 Homonota_spb_MNHNP_11409, [17] 18 Homonota_taragui_LJAMMCNP_14419, [18] 19 Homonota_taragui_LJAMMCNP_14420, [19] 20 Homonota_underwoodi_LJAMMCNP_10923, [20] 21 Homonota_underwoodi_LJAMMCNP_10931, [21] 22 Homonota_uruguayensis_UFRGS_1568, [22] 23 Homonota_uruguayensis_UFRGS_2139, [23] 24 Homonota_whitii_LJAMMCNP_12110, [24] 25 Homonota_whitii_LJAMMCNP_14388, [25] 26 Homonota_williamsii_LJAMMCNP_4467, [26] 27 Homonota_williamsii_LJAMMCNP_6517; TREE tree_1 = (((11:0.01926666702085189,((((((4:0.0022180608916774628,26:0.00000088590627666038):0.002217514994366857,27:0.00000088590627666038):0.00000088590627666038,(1:0.00000088590627666038,5:0.00000088590627666038):0.00000088590627666038):0.00000088590627666038,(24:0.00000088590627666038,25:0.00000088590627666038):0.0022188178580227593):0.002218738557976083,(((17:0.00000088590627666038,16:0.00000088590627666038):0.0022564483156150414,(6:0.00000088590627666038,7:0.0021928285223996986):0.00000314241774705457):0.004476905563825298,(20:0.00000088590627666038,21:0.00000088590627666038):0.00000088590627666038):0.00000088590627666038):0.004454170393862113,(((22:0.00000088590627666038,23:0.00000088590627666038):0.00905339484708884,(15:0.00000088590627666038,14:0.00000088590627666038):0.0022221899251367544):0.00000088590627666038,(2:0.00000088590627666038,(3:0.00000088590627666038,(19:0.00000088590627666038,18:0.00000088590627666038):0.00000088590627666038):0.00000088590627666038):0.002223317395214423):0.00000088590627666038):0.01636553962587216):0.00817573711881067,8:0.01950809553223646):0.004786472975610361,((13:0.006097534203422053,12:0.012228750493222295):0.011145063930398928,(9:0.00000088590627666038,10:0.00000088590627666038):0.031332204559654436):0.004786472975610361); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1493027427232; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 8877284951907732345; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 8423397516450276841; mqVersion 320; checksumv 0 3 2552917193 null getNumChars 449 numChars 449 getNumTaxa 27 numTaxa 27 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 239242.0 sumSquares -3.6893488147419095E19 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 967 809; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #8877284951907732345 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 015b7b584c2313; toggleUseWeights off; endTell; setAssignedID 13699.1493027395281.6618447541476831010; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 867 737; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; makeTreeWindow #8877284951907732345 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 2; setTreeBlockID 015b817255f76; toggleUseWeights off; endTell; setAssignedID 13729.1493027397999.1216374730199654031; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 867 737; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #8423397516450276841 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 209; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 867 737; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;