#NEXUS [written Mon Apr 24 10:04:20 CEST 2017 by Mesquite version 3.2 (build 801) at HG17209/172.30.18.79] BEGIN TAXA; TITLE 30b; DIMENSIONS NTAX=22; TAXLABELS Homonota_andicola_LJAMMCNP_12490 Homonota_andicola_LJAMMCNP_12495 Homonota_borellii_LJAMMCNP_12116 Homonota_borellii_LJAMMCNP_12125 Homonota_darwinii_LJAMMCNP_11424 Homonota_darwinii_LJAMMCNP_9266 Homonota_spa_LJAMMCNP_10577 Homonota_spa_LJAMMCNP_5047 Homonota_spb_MNHNP_11406 Homonota_spb_MNHNP_11409 Homonota_rupicola_RUPI_1 Homonota_rupicola_RUPI_2 Homonota_taragui_LJAMM_CNP_14419 Homonota_taragui_LJAMM_CNP_14420 Homonota_uruguayensis_UFRGS_1568 Homonota_uruguayensis_UFRGS_2579 Homonota_underwoodi_LJAMMCNP_10923 Homonota_underwoodi_LJAMMCNP_10931 Homonota_whitii_LJAMMCNP_12110 Homonota_whitii_LJAMMCNP_14388 Homonota_williamsii_LJAMMCNP_4467 Homonota_williamsii_LJAMMCNP_6517 ; END; BEGIN CHARACTERS; TITLE 30b_Matrix; DIMENSIONS NCHAR=664; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Homonota_andicola_LJAMMCNP_12490 GGTTGGGTGCAGAGCAAAATCTCACCAGTAGATCAGAAGCCAATTCCTTGCCGAACCCTCATCATCTGGGAGTCTGCTTCTGATGGCTACAAGTAGATAGTTCCTGCAAATATGAACATCTGAACAGCTTGTTGATTAACTGATCACCACTGGATCACCACTTGTGAACAGGAAGGGTGTTTGGGCATCCCTAATGAAAATAGTAGTTGCTGGTCAGCCCT--AGGTGTCATCTCCTGGCGGAAAATGAGATGGCCCGTTATTGCCACCGTGACTGGGTTCTT--------------------------------------------------------------------------------------------------------------------------CTTGTTTGGCACCTGGTTTCTTTCTTACCCTTACAACGGCTTCTGTTGTGTTTT-ACAGTTATCTGTACTTATAAGGGATGGAGAGAGGGAGAGAGTCCCTTTTAAGAAAAA--CAAATTCCCGTGCTTTGACAGTTCTTTTCCAGTGGAAATCCTCAGAGCAAATCTTCTCTTAAGCCAGCTATATGAGCACCAGGGCACATGGCAGATACTGCACAAGCATGTTGTGTATTGCACTGTATATTTCTCCTTCCTTCGA Homonota_andicola_LJAMMCNP_12495 GGTTGGGTGCAGAGCAAAATCTCACCAGTAGATCAGAAGCCAATTCCTTGCCGAACCCTCATCATCTGGGAGTCTGCTTCTGATGGCTACAAGTAGATAGTTCCTGCAAATATGAACATCTGAACAGCTTGTTGATTAACTGATCACCACTGGATCACCACTTGTGAACAGGAAGGGTGTTTGGGCATCCCTAATGAAAATAGTAGTTGCTGGTCAGCCCT--AGGTGTCATCTCCTGGCGGAAAATGAGATGGCCCGTTATTGCCACCGTGACTGGGTTCTT--------------------------------------------------------------------------------------------------------------------------CTTGTTTGGCACCTGGTTTCTTTCTTACCCTTACAACGGCTTCTGTTGTGTTTT-ACAGTTATCTGTACTTATAAGGGATGGAGAGAGGGAGAGAGTCCCTTTTAAGAAAAA--CAAATTCCMGTGCTTTGACAGTTCTTTTCCAGTGGAAATCCTCAGAGCAAATCTTCTCTTAAGCCAGCTATATGAGCACCAGGGCACATGGCAGATACTGCACAAGCATGTTGTGTATTGCACTGTATATTTCTCCTTCCTTCGA Homonota_borellii_LJAMMCNP_12116 GGTTGGGTGCAGAGCAAAATCCCACCAGTAGATCAGAAGCCAATTCCTTGCTGAACCCTCATCATCTGGGAGTCAGCTTCTGATGGCTACAAGTAGACAGTTCCTGCAAACATGAACATCTGAACAGCTTGTTGATTAACTGGTCACCACTTGATCAGCACTTGTGAACAGGAAGGGTGTTTGGGCATCCCTAATGAAAATAGTAGTTGCTGGTCAGCCCT--AGGTGTCATCTCCTGGCAGAAAATGAGGTGACCCGTTATTGCCACCGTGACTGGGTTCTT--------------------------------------------------------------------------------------------------------------------------CTTGTTTGGCATCTGGTTTCTTTCTTACCCTTACAGCGGCTTCTGTTGTGTTTTTACAGTTATCTGTACTTATAAGGGATGGAGAGAGGGAGAGAGTCCCTTTTAAGAAAAAA-CAAATCCCAGTGCTTTGACAGTTCTTTTCCGGTGGAAATCCTCAGAGCAAATCTCCTCTTAAGCCAGCTRTATGAGCACCAGGGCGCATGGCAGACACTGCAYGAGCGTGTTGTGTCTTGCACTGTATATTTCTCCTTCCTTCGA Homonota_borellii_LJAMMCNP_12125 GGTTGGGTGCAGAGCAAAATCCCACCAGTAGATCAGAAGCCAATTCCTTGCTGAACCCTCATCATCTGGGAGTCAGCTTCTGATGGCTACAAGTAGACAGTTCCTGCAAACATGAACATCTGAACAGCTTGTTGATTAACTGGTCACCACTTGATCAGCACTTGTGAACAGGAAGGGTGTTTGGGCATCCCTAATGAAAATAGTAGTTGCTGGTCAGCCCT--AGGTGTCATCTCCTGGCAGAAAATGAGGTGACCCGTTATTGCCACCGTGACTGGGTTCTT--------------------------------------------------------------------------------------------------------------------------CTTGTTTGGCATCTGGTTTCTTTCTTACCCTTACAGCGGCTTCTGTTGTGTTTTTACAGTTATCTGTACTTATAAGGGATGGAGAGAGGGAGAGAGTCCCTTTTAAGAAAAAA-CAAATCCCAGTGCTTTGACAGTTCTTTTCCGGTGGAAATCCTCAGAGCAAATCTCCTCTTAAGCCAGCTATATGAGCACCAGGGCGCATGGCAGACACTGCAYGAGCGTGTTGTGTCTTGCACTGTATATTTCTCCTTCCTTCGA Homonota_darwinii_LJAMMCNP_11424 ???????????????????????????GTAGATCAGAAGCCAATTCCTTGCTGAACCCTCATCGTCTGGGAGTCAGCTTCTGATGGCTACAAGTAGACAGTTCCTGCAAACATGAACATCTGAACATCTTGTTGATTAACTGATCACCGCTTGATCACCACTTGTGAGCAGGAAGGGTGTTTGGGCACCCCTAATGAAAATAGTAGTTGCTGGTCAGCCCT--AGGTGTCATCTCCTGGCGGAAAATGAGATGACCCGTTATTGCCACCATGACTGGGTTCTTTTTTTAAGATTCATTCCAACTTAGTCTGACGAAGTGCATGCCATGAACGAAAGCTCACTAAAAATATAATATTGTTGGTCTTAAAGGTGCAATTGGAATCTATCTTTTTTCTTTGGGTTCTTCTTGTTTGGCATCTGGTTTCTTTCTTCCCCTTACAACGGCTTCTGTTGTGTTTT-ACAGTTATCTGTACTTATAAGGGATGGAGAGAGGGAGAGAGTCCCTTTTAAGAAAAA--CAAACTCCAGTGCTTTGACAGTTCTTTTCCAGTGGAAATCCTCAGAGCAAATCTTCTCTTAAGCCAGCTCTATGAGCACCAGGGCGCATGGCAGATACTGCACAAGCATGTTGTGTCTTGCGCTGTATATTTCTCCTTCCTTCGA Homonota_darwinii_LJAMMCNP_9266 ?????????????????????????????AGATCAGAAGCCAATTCCTTGCTGAACCCTCATCGTCTGGGAGTCAGCTTCTGATGGCTACAAGTAGACAGTTCCTGCAAACATGAACATCTGAACATCTTGTTGATTAACTGATCACCGCTTGATCACCACTTGTGAGCAGGAAGGGTGTTTGGGCACCCCTAATGAAAATAGTAGTTGCTGGTCAGCCCT--AGGTGTCATCTCCTGGCGGAAAATGAGATGACCCGTTATTGCCACCATGACTGGGTTCTTTTTTTAAGATTCATTCCAACTTAGTCTGACGAAGTGCATGCCATGAACGAAAGCTCACTAAAAATATAATATTGTTGGTCTTAAAGGTGCAATTGGAATCTATCTTTTTTCTTTGGGTTCTTCTTGTTTTGCATCTGGTTTCTTTCTTCCCCTTACAACGGCTTCTGTTGTGTTTT-ACAGTTATCTGTACTTATAAGGGATGGAGAGAGGGAGAGAGTCCCTTTTAAGAAAAA--CAAACTCCAGTGCTTTGACAGTTCTTTTCCAGTGGAAATCCTCAGAGCAAATCTTCTCTTAAGCCAGCTCTATGAGCACCAGGGCGCATGGCAGATACTGCACAAGCATGTTGTGTCTTGCGCTGTATATTTCTCCTTCCTTCGA Homonota_spa_LJAMMCNP_10577 ??????????????????????????????????????????????CTTGCTGAACCCTCATCATCTGGGAGTCAGCTTCTGATGGCTACAAGTAGACAGTTCCTGCAAACATGAACATCTGAACAGCTTGTTGATGAACTGATCACCCCTTGACCACCCCTTGTGAACAGRAAGGG------------------------------TGCTGGTCAGCCCTATAGGTGTCATCTCCTGGCAGAAAATGAGATGACCCGTTATTGCCACCGTGACTGGGTTCTT--------------------------------------------------------------------------------------------------------------------------CCTGTTTGGYATCTGGTTTCTTTCATACCCTTACAACGGCTTCTGTTGTGTTTT-ACAGTTATCTGTACTTATAAGGGATGGAGAGAGGGAGAGAGKCCCTTTTAAGAAAAAA-CAAATTCCAGTGCTTTGACAGTTCTTTTCCAGTGGAAATCCTCAGAGCAAATCTCCTCTTAAGCCAGCTATATGAGCACCGGGCCACATGGCAGATAC??????????????????????????????????????????????? Homonota_spa_LJAMMCNP_5047 ?????????????????????????????????????????????????????????????TCATCTGGGAGTCAGCTTCTGATGGCTACAAGTAGGCAGTTCCTGCAAACATGAACATCTGAACAGCTTGTTGATSAACTGATCACCMCTTGACCACCCCKTGTGAACAGRAAGGGTGTTTGGGCATCCCTAATGAAAAYAGTAGTTGCTGGTCAGCCCTATAGGTGTCATCTCCTGGCAGAAAATGAGATGACCCGTTATTGCCACCGTGACTGGGTTCTT--------------------------------------------------------------------------------------------------------------------------CCTGTTTGGYATCTGGTTTCTTTCATACCCTTACAACGGCTTCTGTTGTGTTTT-ACAGTTATCTGTACTTATAAGGGATGGAGAGAGGGAGAGAGKCCCTTTTAAGAAAAAA-CAAATTCCAGTGCTTTGACAGTTCTTTTCCAGTGGAAATCCTCAGAGCAAATCTCCTCTTAAGCCAGCTATATGAGCACCGGGCCACATGGCAGATAC??????????????????????????????????????????????? Homonota_spb_MNHNP_11406 GGTTGGGTGCAGAGCAAAATCTCACCAGTAGATCAGAAGGCAGTTCTTTGCTGAACCCTCATCATCTGGGAGTCAGCTTCTGATGGCTACAAGTAGGCAGTTCCTGCAAACATGAACATCTGAACAGCTTGTTGATTAACTGATCACCACTTGACCACCACGTGTGAACAGGAAAGGTGTTTGGGCATCCCTAATGAAAACAGTATTTGC-------------AGGTGTCATCTCCTGGCAGAAAATGAGATGACCCGTTATTGCCACCGTGACTGGGTTCTT--------------------------------------------------------------------------------------------------------------------------CCTGTTTGGCATCTGGTTTCTTTCTTACCCTTACAACGGCTTCTGTTGTG-TTTTACAGTTATCTGTACTTATAAGGGATGGAGAGAGGGAGAGAGTCCCTTTTGAGAAAAAA-CAAATTCCAGTGCTTTGACAGTTCTTTTCCAGTGGAAATCCTCAGAGCAAATCTCCTCTTAAGMCAGCTATATGAGCACCGGGCCACATGGCAGATACCGCACAAGCATGTTGTGTCTTGCACTGTATATTTCTCCTTCCTTCGA Homonota_spb_MNHNP_11409 ????????????????????????????????????AAGGCAGTTCTTTGCTGAACCCTCATCATCTGGGAGTCAGCTTCTGRTGGCTACAAGTAGGCAGTTCCTGCAGACATGAACATCTGAACAGCTTGTTGATTAACTGATCACCACTTGACCACCACGTGTGAACAGGAAAGGTGTTTGGGCATCCCTAATGAAAACAGTATTTGC-------------AGGTGTCATCTCCTGGCAGAAAATGAGATGACCCGTTATTGCCACCGTGACTGGGTTCTT--------------------------------------------------------------------------------------------------------------------------CCTGTTTGGCATCTGGTTTCTTTCTTACCCTTACAACGGCTTCTGTTGTG-TTTTACAGTTATCTGTACTTATAAGGGATGGAGAGAGGGAGAGAGTCCCTTTTGAGAAAAAA-CAAATTCCAGTGCTTTGACAGTTCTTTTCCAGTGGAAATCCTCAGAGCAAATCTCCTCTTAAGMCAGCTATATGAGCACCGGGCCACATGGCAGATACCGCACAAGCATGTTG???????????????????????????????? Homonota_rupicola_RUPI_1 GGTTGGGTGCAGAGCAAAATCCCACCAGTAGATCAGAAGCCAATTCCTTGCTGAACCCTCATCATCTGGGAGTCAGCTTCTGATGGCTACAAGTGGACAGTTCCTGCAAACATGAACATCTGAACAGCTTGTTGATTGACTGGTCACCACTTGATCAGCACTTGTGAACAGGAAGGGTGTTTGGGCATCCCTAATGAAAATAGTAGTTGCTGGTCAGCCCT--AGGTGTCATCTCCTGGCAGAAAATGAGGTGACCTGTTATTGCCACCGTGACTGGGTTCTT--------------------------------------------------------------------------------------------------------------------------CTTATTTGGCATCTGGTTTCTTTCTTACCCTTACAGCGGCTTCTGTTGTGTTTTTACAGTTATCTGTACTTATAAGGGATGGAGAGAGGGAGAGAGTCCCTTTTAAGAAAAAA-CAAATCCCAGTGCTTTGACAGTTCTTTTCCGGTGGAAATCCTCAGAGCAAATCTCCTCTTAAGCCAGCTATATGAGCACCAGGGCGCATGGCAGACACTGCACAAGCGTGTTGTGTCTTGCACTGTATATTTCTCCTTCCTTCGA Homonota_rupicola_RUPI_2 GGTTGGGTGCAGAGCAAAATCCCACCAGTAGATCAGAAGCCAATTCCTTGCTGAACCCTCATCATCTGGGAGTCAGCTTCTGATGGCTACAAGTGGACAGTTCCTGCAAACATGAACATCTGAACAGCTTGTTGATTGACTGGTCACCACTTGATCAGCACTTGTGAACAGGAAGGGTGTTTGGGCATCCCTAATGAAAATAGTAGTTGCTGGTCAGCCCT--AGGTGTCATCTCCTGGCAGAAAATGAGGTGACCTGTTATTGCCACCGTGACTGGGTTCTT--------------------------------------------------------------------------------------------------------------------------CTTATTTGGCATCTGGTTTCTTTCTTACCCTTACAGCGGCTTCTGTTGTGTTTTTACAGTTATCTGTACTTATAAGGGATGGAGAGAGGGAGAGAGTCCCTTTTAAGAAAAAA-CAAATCCCAGTGCTTTGACAGTTCTTTTCCGGTGGAAATCCTCAGAGCAAATCTCCTCTTAAGCCAGCTATATGAGCACCAGGGCGCATGGCAGACACTGCACAAGTGTGTTGTGTCTTGCACTGTATATTTCTCCTTCCTTCGA Homonota_taragui_LJAMM_CNP_14419 GGTTGGGTGCAGAGCAAAATCCCACCAGTAGATCAGAAGCCAATTCCTTGCTGAACCCTCATCATCTGGGAGTCAGCTTCTGATGGCTACAAGTAGACAGTTCCTGCAAACATGAACATCTGAACAGCTTGTTGATTAACTGGTCACCACTTGATCAGCACTTGTGAACAGGAAGGGTGTTTGGGCATCCCTAATGAAAATAGTAGTTGCTGGTCAGCCCT--AGGTGTCATCTCCTGGCAGAAAATGAGGTGACCCCTTATTGCCACCGTGACTGGGTTCTT--------------------------------------------------------------------------------------------------------------------------CTTGTTTGGCATCTGGTTTCTTTCTTACCCTTACAGCGGCTTCTGTTGTGTTTTTACAGTTATCTGTACTTATAAGGGATGGAGAGAGGGAGAGAGTCCCTTTTAAGAAAAAA-CAAATCCCAGTGCTTTGACAGTTCTTTTCCGGTGGAAATCCTCAGAGCAAATCTCCTCTTAAGCCAGCTGTATGAGCACCAGGGCGCATGGCAGACACTGCACGAGCGTGTTGTGTCTTGCACTGTATATTTCTCCTTCCTTCGA Homonota_taragui_LJAMM_CNP_14420 GGTTGGGTGCAGAGCAAAATCCCACCAGTAGATCAGAAGCCAATTCCTTGCTGAACCCTCATCATCTGGGAGTCAGCTTCTGATGGCTACAAGTAGACAGTTCCTGCAAACATGAACATCTGAACAGCTTGTTGATTAACTGGTCACCACTTGATCAGCACTTGTGAACAGGAAGGGTGTTTGGGCATCCCTAATGAAAATAGTAGTTGCTGGTCAGCCCT--AGGTGTCATCTCCTGGCAGAAAATGAGGTGACCCCTTATTGCCACCGTGACTGGGTTCTT--------------------------------------------------------------------------------------------------------------------------CTTGTTTGGCATCTGGTTTCTTTCTTACCCTTACAGCGGCTTCTGTTGTGTTTTTACAGTTATCTGTACTTATAAGGGATGGAGAGAGGGAGAGAGTCCCTTTTAAGAAAAAA-CAAATCCCAGTGCTTTGACAGTTCTTTTCCGGTGGAAATCCTCAGAGCAAATCTCCTCTTAAGCCAGCTGTATGAGCACCAGGGCGCATGGCAGACACTGCACGAGCGTGTTGTGTCTTGCACTGTATATTTCTCCTTCCTTCGA Homonota_uruguayensis_UFRGS_1568 ???????????????????????????????????????????TTCCTTGCTGAACCCTCACCATCTGGGAGTCAGCTTCTGATGGCTACAAGTAGACAGTTCCTGCAAACATGAACATCTGAACAGCTTGTTGATTAACTGGTCACCACTTGATCAGCACTTGTGAACAGGAAGGGTGTTTGGGCATCCCTAATGAAAACAGTAGTTGCTGGTCAGCCCT--AGGTGTCATCTCCTGGCAGAAAATGAGGTGACCCATTATTGCCACCATGACTGGGTTCTT--------------------------------------------------------------------------------------------------------------------------CTTGTTTGGCACCTGGTTTCTTTCTTACCCTTACAGCGGCTTCTGTTGTGTTTTTACAGTTATCTGTACTTATAAGGGATGGAGAGAGGGAGAGAGTCCCTTTTAAGAAAAAA-CAAATTCCAGTGCTTTGACAGTTCTTTTCCGGTGGAAATCCTCAGAGCAAATCTCCTCTTAAGCCAGCTATATGAGCACCAGGGTGCATGGCAGACACTGCACGAGCGTGTTGTCTCTTGCACTGTATATTTCTCCTTCCTTCGA Homonota_uruguayensis_UFRGS_2579 GGTTGGGTGCAGAGCAAAATCCCACCAGTAGATCAGAAGCCAATTCCTTGCTGAACCCTCACCATCTGGGAGTCAGCTTCTGATGGCTACAAGTAGACAGTTCCTGCAAACATGAACATCTGAACAGCTTGTTGATTAACTGGTCACCACTTGATCAGCACTTGTGAACAGGAAGGGTGTTTGGGCATCCCTAATGAAAACAGTAGTTGCTGGTCAGCCCT--AGGTGTCATCTCCTGGCAGAAAATGAGGTGACCCATTATTGCCACCATGACTGGGTTCTT--------------------------------------------------------------------------------------------------------------------------CTTGTTTGGCACCTGGTTTCTTTCTTACCCTTACAGCGGCTTCTGTTGTGTTTTTACAGTTATCTGTACTTATAAGGGATGGAGAGAGGGAGAGAGTCCCTTTTAAGAAAAAA-CAAATTCCAGTGCTTTGACAGTTCTTTTCCGGTGGAAATCCTCAGAGCAAATCTCCTCTTAAGCCAGCTATATGAGCACCAGGGTGCATGGCAGACACTGCACGAGCGTGTTGTCTCTTGCACTGTATATTTCTCCTTCCTTCGA Homonota_underwoodi_LJAMMCNP_10923 GGTTGGGTGCAGAGCAAAATCTCACCAGTAGATCAGAAGCCAGTTCCTTGYTGAACCCTCATCATCTGGGAGTCAGCTTCTGATGGCTACAAGTAGGCAGTTCCTGCAAACATGAACATCTGAACAGCTTGTTGATTAACTGATCACCCCTTGACCACCCCTTGTGAACAGGAAGGGTGTTTGGGCATCCCTAATGAAAATACTAGTTGCTGGTCAGCCCTATAGGTGTCATCTCCTGGCAGAAAATGAGATGACCCGTTATTGCCACCATGACTGGGTTCTT--------------------------------------------------------------------------------------------------------------------------CCTGTTTGGCATCTGGTTTCTTTCATACCCTTACAACGGCTTCTGTTGTGTTTT-ACAGTTATCTGTACTTATAAGGGATGGAGAGAGGGAGAGAGTCCCTTTTAAGAAAAAAACAAATTCCAGTGCTTTGACAGTTCTTTTCCAGTGGAAATCCTCAGAGCAAATCTTTTCTTAAGCCAGCTGTATGAGCACCAGGCCACATGGCAGATACCGCACAAGCATGTTGTGTCTTGCACTGTATATTTCTCCTTCCTTCGA Homonota_underwoodi_LJAMMCNP_10931 ???????????????GAAATCTCACCAGTAGATCAGAAGCCAGTTCCTTGYTGAACCCTCATCATCTGGGAGTCAGCTTCTGATGGCTACAAGTAGRCAGTTCCTGCAAACATGAACATCTGAACAGCTTGTTGATTAACTGATCACCCCTTGACCACCCCTTGTGAACAGGAAGGGTGTTTGGGCATCCCTAATGAAAATACTAGTTGCTGGTCAGCCCTATAGGTGTCATCTCCTGGCAGAAAATGAGATGACCCGTTATTGCCACCATGACTGGGTTCTT--------------------------------------------------------------------------------------------------------------------------CCTGTTTGGCATCTGGTTTCTTTCATACCCTTACAACGGCTTCTGTTGTGTTTT-ACAGTTATCTGTACTTATAAGGGATGGAGAGAGGGAGAGAGTCCCTTTTAAGAAAAAAACAAATTCCAGTGCTTTGACAGTTCTTTTCCAGTGGAAATCCTCAGAGCAAATCTTCTCTTAAGCCAGCTGTATGAGCACCAGGCCACATGGCAGATACCGCACAAGCATGTTGTGTCTTGCACTGTATATTTCTCCTTCCTTCGA Homonota_whitii_LJAMMCNP_12110 GGTTGGGTGCAGAGCAAAATCTCACCAGTAGATCAGAAGCCAATTCCTTGCCGAACCCTCATCATCTGGGAGTCTGCTTCTGATGGCTACAAGTAGATAGTTCCTGCAAATATGAACATCTGAACAGCTTGTTGATTAACTGATCACCACTGGATCACCACTTGTGAACAGGAAGGGTGTTTGGGCATCCCTAATGAAAATAGTAGTTGCTGGTCAGCCCT--AGGTGTCATCTCCTGGCGGAAAATGAGATGGCCCGTTATTGCCACCGTGACTGTGTTCTT--------------------------------------------------------------------------------------------------------------------------CTTGTTTGGCACCTGGTTTCTTTCTTACCCTTACAACGGCTTCTGTTGTGTTTT-ACAGTTATCTGTACTTATAAGGGATGGAGAGAGGGAGAGAGTCCCTTTTAAGAAAAA--CAAATTCCAGTGCTTTGACAGTTCTTTTCCAGTGGAAATCCTCAGAGCAAATCTTCTCTTAAGCCAGCTATATGAGCACCAGGGCACATGGCAGATACTGCACAAGCATGTTGTGTCTTGCACTGTATATTTCTCCTTCCTTCGA Homonota_whitii_LJAMMCNP_14388 GGTTGGGTGCAGAGCAAAATCTCACCAGTAGATCAGAAGCCAATTCCTTGCCGAACCCTCATCATCTGGGAGTCTGCTTCTGATGGCTACAAGTAGATAGTTCCTGCAAATATGAACATCTGAACAGCTTGTTGATTAACTGATCACCACTGGATCACCACTTGTGAACAGGAAGGGTGTTTGGGCATCCCTAATGAAAATAGTAGTTGCTGGTCAGCCCT--AGGTGTCATCTCCTGGCGGAAAATGAGATGGCCCGTTATTGCCACCSTGACTGGGTTCTT--------------------------------------------------------------------------------------------------------------------------CTTGTTTGGCACCTGGTTTCTTTCTTACCCTTACAACGGCTTCTGTTGTGTTTT-ACAGTTATCTGTACTTATAAGGGATGGAGAGAGGGAGAGAGTCCCTTTTAAGAAAAA--CAAATTCCAGTGCTTTGACAGTTCTTTTCCAGTGGAAATCCTCAGAGCAAATCTTCTCTTAAGCCAGCTATATGAGCACCAGGGCACATGGCAGATACTGCACAAGCATGTTGTGTCTTGCRCTGTATATTTCTCCTTCCTTCGA Homonota_williamsii_LJAMMCNP_4467 GGTTGGGTGCAGAGCAAAATCTCACCAGTAGATCAGAAGCCAATTCTTTGCTGAACCCTCATCGTCTGGGAGTCTGCTTCTGATGGCTACAAGTAGACAGTTCCTGCAAATATGAACATCTGAACAGCTTGTTGATTAACTGATCACCACTTGATCGCCACTTGTGAACAGGAAGGGTGTTCGGTCATCCCTAATGAAAATAGTAGTTGCTGGTCAGCCCT--AGGTGTCATCTCCTGGCGGAAAATGAGATGACCCGTTATTGCCACCGTGGCTGGGTTCTT--------------------------------------------------------------------------------------------------------------------------CTTGTTTGGCATCTGGTTTCTTTCTTGCCCTTACAACRGCTTCTGTTGTGTTTT-ACAGTTATCTGTACTTATAAGGGATGGAGAGAGGGAGAGAGTCCCTTTTAAGAAAAA--CAAATTCCAGTGCTTTGACAGTTCTTTTCCAGTGGCAATCCTCAGAGCAAATCTTCTCTTAAGCCAGCTACATGAGCACCAGGGCGCATGGCAGATACTGCACAAGCATGTTGTGTCTTGCGCTGTATATCTCTCCTTCCTTCGA Homonota_williamsii_LJAMMCNP_6517 GGTTGGGTGCAGAGCAAAATCTCACCAGTAGATCAGAAGCCAATTCCTTGCTGAACCCTCATCGTCTGGGAGTCTGCTTCTGATGGCTACAAGTAGACAGTTCCTGCAAATATGAACATCTGAACAGCTTGTTGATTAACTGATCACCACTTGATCGCCACTTGTGAACAGGAAGGGTGTTCGGTCATCCCTAATGAAAATAGTAGTTGCTGGTCAGCCCT--AGGTGTCATCTCCTGGCGGAAAATGAGATGACCCGTTATTGCCACCGTGGCTGGGTTCTT--------------------------------------------------------------------------------------------------------------------------CTTGTTTGGCATCTGGTTTCTTTCTTGCCCTTACAACAGCTTCTGTTATGTTTT-ACAGTTATCTGTACTTATAAGGGATGGAGAGAGGGAGAGAGTCCCTTTTAAGAAAAAA-CAAATTCCAGTGCTTTGACAGTTCTTTTCCAGTGGAAATCCTCAGAGCAAATCTTCTCTTAAGCCAGCTACATGAGCACCAGGGCGCATGGCAGATACTGCACAAGCATGTTGTGTCTTGCGCTGTATATCTCTCCTTCCTTCGA ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 664; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 664; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 664; END; BEGIN TREES; Title 30b_BI; ID 015b66c081ea32; LINK Taxa = 30b; TRANSLATE [0] 1 Homonota_andicola_LJAMMCNP_12490, [1] 2 Homonota_andicola_LJAMMCNP_12495, [2] 3 Homonota_borellii_LJAMMCNP_12116, [3] 4 Homonota_borellii_LJAMMCNP_12125, [4] 5 Homonota_darwinii_LJAMMCNP_11424, [5] 6 Homonota_darwinii_LJAMMCNP_9266, [6] 7 Homonota_spa_LJAMMCNP_10577, [7] 8 Homonota_spa_LJAMMCNP_5047, [8] 9 Homonota_spb_MNHNP_11406, [9] 10 Homonota_spb_MNHNP_11409, [10] 11 Homonota_rupicola_RUPI_1, [11] 12 Homonota_rupicola_RUPI_2, [12] 13 Homonota_taragui_LJAMM_CNP_14419, [13] 14 Homonota_taragui_LJAMM_CNP_14420, [14] 15 Homonota_uruguayensis_UFRGS_1568, [15] 16 Homonota_uruguayensis_UFRGS_2579, [16] 17 Homonota_underwoodi_LJAMMCNP_10923, [17] 18 Homonota_underwoodi_LJAMMCNP_10931, [18] 19 Homonota_whitii_LJAMMCNP_12110, [19] 20 Homonota_whitii_LJAMMCNP_14388, [20] 21 Homonota_williamsii_LJAMMCNP_4467, [21] 22 Homonota_williamsii_LJAMMCNP_6517; TREE con_50_majrule = (((9:0.002113367,10:0.005279962):0.02192664,((7:0.005714489,8:0.002394941):0.006271542,(17:0.004781067,18:0.004728354):0.01439179):0.01041053):0.01125229,(((5:0.00187352,6:0.004241266):0.02856957,((21:0.007520924,22:0.005123625):0.02715057,(19:0.004730415,20:0.002018565,(1:0.002849296,2:0.002086367):0.006493038):0.01920635):0.007499547):0.008203788,(3:0.001998434,4:0.001968758,(11:0.002039413,12:0.00473963):0.01396051,(13:0.00200988,14:0.002015812):0.007106997,(15:0.002121903,16:0.002041357):0.02248334):0.02705749):0.01125229); END; BEGIN TREES; Title 30b_ML; ID 015b7b7b459221; LINK Taxa = 30b; TRANSLATE [0] n0 Homonota_andicola_LJAMMCNP_12490, [1] n1 Homonota_andicola_LJAMMCNP_12495, [2] n2 Homonota_borellii_LJAMMCNP_12116, [3] n3 Homonota_borellii_LJAMMCNP_12125, [4] n4 Homonota_darwinii_LJAMMCNP_11424, [5] n5 Homonota_darwinii_LJAMMCNP_9266, [6] n6 Homonota_spa_LJAMMCNP_10577, [7] n7 Homonota_spa_LJAMMCNP_5047, [8] n8 Homonota_spb_MNHNP_11406, [9] n9 Homonota_spb_MNHNP_11409, [10] n10 Homonota_rupicola_RUPI_1, [11] n11 Homonota_rupicola_RUPI_2, [12] n12 Homonota_taragui_LJAMM_CNP_14419, [13] n13 Homonota_taragui_LJAMM_CNP_14420, [14] n14 Homonota_uruguayensis_UFRGS_1568, [15] n15 Homonota_uruguayensis_UFRGS_2579, [16] n16 Homonota_underwoodi_LJAMMCNP_10923, [17] n17 Homonota_underwoodi_LJAMMCNP_10931, [18] n18 Homonota_whitii_LJAMMCNP_12110, [19] n19 Homonota_whitii_LJAMMCNP_14388, [20] n20 Homonota_williamsii_LJAMMCNP_4467, [21] n21 Homonota_williamsii_LJAMMCNP_6517; TREE tree_1 = (((n8:0.00000120367509047041,n9:0.0021389999021307594):0.014280258947740045,((n6:0.002439728908847707,n7:0.00000120367509047041):0.0028041053619869295,(n16:0.0019275426584180928,n17:0.0018738313399781661):0.009266951524331733):0.006128907988714546):0.007765281492800542,(((n4:0.00000120367509047041,n5:0.0016020928646318508):0.020396686023997967,((n20:0.003914825849704154,n21:0.0019357714571436161):0.019351403063067436,((n0:0.00000120367509047041,n1:0.00000120367509047041):0.0037861998487960314,(n18:0.00188249959745531,n19:0.00000120367509047041):0.00000120367509047041):0.012068916478558175):0.004065023986260742):0.003835218802588729,((n10:0.00000120367509047041,n11:0.0018515226474127655):0.007794588086901254,((n14:0.00000120367509047041,n15:0.00000120367509047041):0.015255560313659357,(n3:0.00000120367509047041,(n2:0.00000120367509047041,(n12:0.00000120367509047041,n13:0.00000120367509047041):0.003728555650022987):0.00000120367509047041):0.00000120367509047041):0.001587315111570194):0.018637528594090756):0.007765281492800542); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1493021060610; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 3573439156700674068; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 9204538166133897200; mqVersion 320; checksumv 0 3 1013122859 null getNumChars 664 numChars 664 getNumTaxa 22 numTaxa 22 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 278239.0 sumSquares -6.91752902764108E19 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 184; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1149 882; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #3573439156700674068 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #3573439156700674068; getWindow; tell It; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; getTable; tell It; rowNamesWidth 245; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 965 810; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.arrow; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #3573439156700674068 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 015b66c081ea32; toggleUseWeights off; endTell; setAssignedID 4424.1492077548562.484150948656192623; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 965 810; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.reroot; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; makeTreeWindow #3573439156700674068 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 2; setTreeBlockID 015b7b7b459221; toggleUseWeights off; endTell; setAssignedID 2853.1492425333040.8083079146707900763; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 965 810; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.reroot; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #9204538166133897200 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 965 810; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;