#NEXUS [written Mon Apr 24 10:40:34 CEST 2017 by Mesquite version 3.2 (build 801) at HG17209/172.30.18.79] BEGIN TAXA; TITLE RBMX; DIMENSIONS NTAX=27; TAXLABELS Homonota_andicola_LJAMMCNP_12490 Homonota_andicola_LJAMMCNP_12495 Homonota_borellii_LJAMMCNP_12116 Homonota_borellii_LJAMMCNP_12125 Homonota_darwinii_LJAMMCNP_11424 Homonota_darwinii_LJAMMCNP_9266 Homonota_spa_LJAMMCNP_10577 Homonota_spa_LJAMMCNP_5047 Garthia_gaudichaudi_IBEG1_2 Garthia_gaudichaudi_IBEG1_1 Gymnodactylus_geckoides_LG_1050 Gymnodactylus_geckoides_LG_911 Phyllodactylus_kofordi_TG_266 Phyllopezus_przewalskii_LJAMMCNP_12089 Phyllopezus_pollicaris_CHUNB_57388 Homonota_rupicola_RUPI_1 Homonota_rupicola_RUPI_2 Homonota_spb_MNHNP_11406 Homonota_spb_MNHNP_11409 Homonota_taragui_LJAMMCNP_14419 Homonota_taragui_LJAMMCNP_14420 Homonota_uruguayensis_UFRGS_1568 Homonota_uruguayensis_UFRGS_2579 Homonota_williamsii_LJAMMCNP_4467 Homonota_williamsii_LJAMMCNP_6517 Homonota_whitii_LJAMMCNP_12110 Homonota_whitii_LJAMMCNP_14388 ; END; BEGIN CHARACTERS; TITLE RBMX_Matrix; DIMENSIONS NCHAR=600; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = ?; MATRIX Homonota_andicola_LJAMMCNP_12490 ACTATTCAGATCACCCAAGTGGAGGCTCTTATAGAGATTCATATGAGAGT Homonota_andicola_LJAMMCNP_12495 ACTATTCAGATCACCCAAGTGGAGGCTCTTATAGAGATTCATATGAGAGT Homonota_borellii_LJAMMCNP_12116 ACTATTCAGATCACCCAAGTGGAGGCTCTTACAGAGATTCATATGAGAGT Homonota_borellii_LJAMMCNP_12125 ACTATTCAGATCACCCAAGTGGAGGCTCTTACAGAGATTCATATGAGAGT Homonota_darwinii_LJAMMCNP_11424 ACTATTCAGATCACCCAAGTGGAGGCTCTTATAGAGATTCATATGAGAGT Homonota_darwinii_LJAMMCNP_9266 ACTATTCAGATCACCCAAGTGGAGGCTCTTATAGAGATTCATATGAGAGT Homonota_spa_LJAMMCNP_10577 ACTATTCAGATCACCCAAGTGGAGGCTCTTACAGAGATTCATATGAGAGT Homonota_spa_LJAMMCNP_5047 ACTATTCAGATCACCCAAGTGGAGGCTCTTACAGAGATTCATATGAGAGT Garthia_gaudichaudi_IBEG1_2 ACTATTCAGATCAYCCAAGTGGAGGCTCCTATAGAGATTCATATGAGAGT Garthia_gaudichaudi_IBEG1_1 ACTATTCAGATCAYCCAAGTGGAGGCTCCTATAGAGATTCATATGAGAGT Gymnodactylus_geckoides_LG_1050 ?????TCAGATCACCCAAGTGGAGGCTCTTACAGAGATTCATATGAGAGT Gymnodactylus_geckoides_LG_911 ACTACTCAGATCACCCAAGTGGAGGCTCTTACAGAGATTCATATGAGAGT Phyllodactylus_kofordi_TG_266 ACTATTCAGATCATCCAAGTGGCGGCTCCTACAGAGATTCATATGAGAGT Phyllopezus_przewalskii_LJAMMCNP_12089 ACTACTCAGATCACCCAAGTGGAGGCTCTTACAGAGATTCATATGAGAGT Phyllopezus_pollicaris_CHUNB_57388 ACTACTCGGATCACCCAAGTGGAGGCTCTTACAGAGATTCATATGAGAGT Homonota_rupicola_RUPI_1 ?????????????????????????????????????????????????? Homonota_rupicola_RUPI_2 ?????????????????????????????????????????????????? Homonota_spb_MNHNP_11406 ACTATTCAGATCACCCAAGTGGAGGCTCTTATAGAGATTCATATGAGAGT Homonota_spb_MNHNP_11409 ACTATTCAGATCACCCAAGTGGAGGCTCTTATAGAGATTCATATGAGAGT Homonota_taragui_LJAMMCNP_14419 ?????????????????????????????????????????????????? Homonota_taragui_LJAMMCNP_14420 ?????????????????????????????????????????????????? Homonota_uruguayensis_UFRGS_1568 ?????????????????????????????????????????????????? Homonota_uruguayensis_UFRGS_2579 ?????????????????????????????????????????????????? Homonota_williamsii_LJAMMCNP_4467 ACTATTCAGATCACCCAAGTGGAGGCTCTTATAGAGATTCATATGAGAGT Homonota_williamsii_LJAMMCNP_6517 ACTATTCAGATCACCCAAGTGGAGGCTCTTATAGAGATTCATATGAGAGT Homonota_whitii_LJAMMCNP_12110 ACTATTCAGATCACCCAAGTGGAGGCTCTTATAGAGATTCATATGAGAGT Homonota_whitii_LJAMMCNP_14388 ?????????????????????????????????????????????????? Homonota_andicola_LJAMMCNP_12490 TATGGTAAGTGCTTATTTTTAGGGTCTTAAGGAGGTTT-AACACAACTTG Homonota_andicola_LJAMMCNP_12495 TATGGTAAGTGCTTATTTTTAGGGTCTTAAGGAGGTTT-AACACAACTTG Homonota_borellii_LJAMMCNP_12116 TATGGTAAGTGCTTATTTTTAGGGTCTTAAGGAGGTTTTATCACAACTCG Homonota_borellii_LJAMMCNP_12125 TATGGTAAGTGCTTATTTTTAGGGTCTTAAGGAGGTTTTATCACAACTCG Homonota_darwinii_LJAMMCNP_11424 TATGGTAAGTGCTTATTTTTAGGGTCTTAAGGAGGTTT-AACACAACTTG Homonota_darwinii_LJAMMCNP_9266 TATGGTAAGTGCTTATTTTTAGGGTCTTAAGGAGGTTT-AACACAACTTG Homonota_spa_LJAMMCNP_10577 TATGGTAAGTGCTTATTTTTAGGGTCTTAAGGAGGTTT-AACACAACTTC Homonota_spa_LJAMMCNP_5047 TATGGTAAGTGCTTATTTTTAGGGTCTTAAGGAGGTTT-AACACAACTTC Garthia_gaudichaudi_IBEG1_2 TATGGTAAGTGCTTATTTTTAGGGTGTTAAGAAGGTTT-AACACAACTTT Garthia_gaudichaudi_IBEG1_1 TATGGTAAGTGCTTATTTTTAGGGTGTTAAGAAGGTTT-AACACAACTTT Gymnodactylus_geckoides_LG_1050 TACGGTAAGTGCTAAGTTTTAGGGTCTTAAGGAGGTTT-AACACAACTTG Gymnodactylus_geckoides_LG_911 TACGGTAAGTGCTTAGTTTTAGGGTCTTAAGGAGGTTT-AACACAACTTG Phyllodactylus_kofordi_TG_266 TACGGTAAGTGCGTATTTTTAGGGTCTTAAGGAGGTTT-AACACAACTTG Phyllopezus_przewalskii_LJAMMCNP_12089 TACGGTAAGTGCTTATTTTTAGGGTCTTAAGGAGGTTT-AACACAGCTTG Phyllopezus_pollicaris_CHUNB_57388 TACGGTAAGTGCTTATTTTTAGGGTCTTAAGGAGGTTT-AACACAACTTG Homonota_rupicola_RUPI_1 ?????????????????????????????????????????????????? Homonota_rupicola_RUPI_2 ?????????????????????????????????????????????????? Homonota_spb_MNHNP_11406 TATGGTAAGTGCTTATTTTTAGGGTCTTAAGGAGGTTT-AACACAACTTC Homonota_spb_MNHNP_11409 TATGGTAAGTGCTTATTTTTAGGGTCTTAAGGAGGTTT-AACACAACTTC Homonota_taragui_LJAMMCNP_14419 ?????????????????????????????????????????????????? Homonota_taragui_LJAMMCNP_14420 ?????????????????????????????????????????????????? Homonota_uruguayensis_UFRGS_1568 ?????????????????????????????????????????????????? Homonota_uruguayensis_UFRGS_2579 ?????????????????????????????????????????????????? Homonota_williamsii_LJAMMCNP_4467 TATGGTAAGTGCTTATTTTTAGGGTCTTAAGGAGGTTT-AACACAACTTG Homonota_williamsii_LJAMMCNP_6517 TATGGTAAGTGCTTATTTTTAGGGTCTTAAGGAGGTTT-AACACAACTTG Homonota_whitii_LJAMMCNP_12110 TATGGTAAGTGCTTATTTTTAGGGTCTTAAGGAGGTTT-AACACAACTTG Homonota_whitii_LJAMMCNP_14388 ?????????????????????????????????????????????????? Homonota_andicola_LJAMMCNP_12490 TTCTCTACTTGCTAGACTGTTACTGGGTGAGAGA-AAATTTGAATGCTGG Homonota_andicola_LJAMMCNP_12495 TTCTCTACTTGCTAGACTGTTACTGGGTGAGAGA-AAATTTGAATGCTGG Homonota_borellii_LJAMMCNP_12116 TTCTCTACTTGCTAGACTGTTACTGGGTGAGAGA-AAATTTGAATGCTGG Homonota_borellii_LJAMMCNP_12125 TTCTCTACTTGCTAGACTGTTACTGGGTGAGAGA-AAATTTGAATGCTGG Homonota_darwinii_LJAMMCNP_11424 TTCTCTACTTGCTAGACGGTTACTGGGTGAGAGA-AAATTTGAATGCTGG Homonota_darwinii_LJAMMCNP_9266 TTCTCTACTTGCTAGACGGTTACTGGGTGAGAGA-AAATTTGAATGCTGG Homonota_spa_LJAMMCNP_10577 TTCTCTACTTGCTAGACTGTTACTGGGTGAGGGG-AAATTTGAATGCTGG Homonota_spa_LJAMMCNP_5047 TTCTCTACTTGCTAGACTGTTACTGGGTGAGGGG-AAATTTGAATGCTGG Garthia_gaudichaudi_IBEG1_2 TTACCTACTTGCTAGACTGCTTCTGGGTGAGGGGG-AATTTGAATGCTGG Garthia_gaudichaudi_IBEG1_1 TTACCTACTTGCTAGACTGCTTCTGGGTGAGGGGG-AATTTGAATGCTGG Gymnodactylus_geckoides_LG_1050 TTATCTACTTGCTAGACTGCTTCTGGGTGAGGGGG-AATTTGAATGCTGG Gymnodactylus_geckoides_LG_911 TTATCTACTTGCTAGACTGCTTCTGGGTGAGGGGG-AATTTGAATGCTGG Phyllodactylus_kofordi_TG_266 TTTTCTGCTTGCTAGACTGCTTGTGGGTGAGGGAG-AATTTGAATGCTGG Phyllopezus_przewalskii_LJAMMCNP_12089 TTCTCTACTTGCTAGACTGCTTCTGGGTGAGGGGG-AATTTGAATGCTGG Phyllopezus_pollicaris_CHUNB_57388 TTCTCTACTTGCTAGACTGCTTCTGGGTTAGGGGGGGATTTGAATGCTGG Homonota_rupicola_RUPI_1 ?????????????????????????????????A-AAATTTGAATGCTGG Homonota_rupicola_RUPI_2 ?????????????????????????????????A-AAATTTGAATGCTGG Homonota_spb_MNHNP_11406 TTCTCTACTTGCTAGACTGTTACTGGGTGAGGGG-AAATTTGAATGCTGG Homonota_spb_MNHNP_11409 TTCTCTRCTTGCTAGACTGTTACTGGGTGAGGGG-AAATTTGAATGCTGG Homonota_taragui_LJAMMCNP_14419 ??????????????????????????????????????TTTTAATGCTGG Homonota_taragui_LJAMMCNP_14420 ??????????????????????????????????????TTTTAATGCTGG Homonota_uruguayensis_UFRGS_1568 ?????????????????????????????????A-AAATTTGAATGCTGG Homonota_uruguayensis_UFRGS_2579 ?????????????????????????????????????????????????? Homonota_williamsii_LJAMMCNP_4467 TTCTCTACTTGCTAGACGGTTACTGGGTGAGAGA-AAATTTGAATGCTGG Homonota_williamsii_LJAMMCNP_6517 TTCTCTACTTGCTAGACGGTTACTGGGTGAGAGA-AAATTTGAATGCTGG Homonota_whitii_LJAMMCNP_12110 TTCTCTACTTGCTAGACTGTTACTGGGTGAGAGA-AAATTTGAATGCTGG Homonota_whitii_LJAMMCNP_14388 ?????????????????????ACTGGGTGAGAGA-AAATTTGAATGCTGG Homonota_andicola_LJAMMCNP_12490 GCTTGCCCACCGCA--------AAGTACAGTTATTTTATTTAACAGCACA Homonota_andicola_LJAMMCNP_12495 GCTTGCCCACCGCA--------AAGTACAGTTATTTTATTTAACAGCACA Homonota_borellii_LJAMMCNP_12116 GCTTGCCCACCGCA--------AAGTACAGTTATTTTATTTAACAGCACA Homonota_borellii_LJAMMCNP_12125 GCTTGCCCACCGCA--------AAGTACAGTTATTTTATTTAACAGCACA Homonota_darwinii_LJAMMCNP_11424 GCTTGCCCACCGCA--------AAGTACAGTTATTTTATTTAACAGCACA Homonota_darwinii_LJAMMCNP_9266 GCTTGCCCACCGCA--------AAGTACAGTTATTTTATTTAACAGCACA Homonota_spa_LJAMMCNP_10577 GCTTGCCCACCACA--------AAGTACAGTTATTTTATTTAACAGCACA Homonota_spa_LJAMMCNP_5047 GCTTGCCCACCACA--------AAGTACAGTTATTTTATTTAACAGCACA Garthia_gaudichaudi_IBEG1_2 GCTTGCCCACCACAGTGGGGAAAAGTAAAGTTATTTTATTTAACAGCACA Garthia_gaudichaudi_IBEG1_1 GCTTGCCCACCACAGTGGGGAAAAGTAAAGTTATTTTATTTAACAGCACA Gymnodactylus_geckoides_LG_1050 GCTTGCCCACCACAGTGGAAAAAAGTACAGTTATTTTATTTAACAGCTCA Gymnodactylus_geckoides_LG_911 GCTTGCCCACCACAGTGGAAAAAAGTACAGTTATTTTATTTAACAGCTCA Phyllodactylus_kofordi_TG_266 GCTTGCCCACCACA--------AAGTACAGTTATTTTATTTAACAGCACA Phyllopezus_przewalskii_LJAMMCNP_12089 GCTTGCCCACCACAGTGGGAAAAAGTACAGTTATTTTATTTAACAGCACA Phyllopezus_pollicaris_CHUNB_57388 GCTTGCCCACCACAGTGGGAAAAAGTACAGTTATTTTATTTAACAGCACA Homonota_rupicola_RUPI_1 GCTTGCCCACCGCA--------AAGTACAGTTATTTTATTTAACAGCACA Homonota_rupicola_RUPI_2 GCTTGCCCACCGCA--------AAGTACAGTTATTTTATTTAACAGCACA Homonota_spb_MNHNP_11406 GCTTGCCCACCACA--------AAGTACAGTTATTTTATTTAACAGCACA Homonota_spb_MNHNP_11409 GCTTGCCCACCACA--------AAGTACAGTTATTTTATTTAACAGCACA Homonota_taragui_LJAMMCNP_14419 GCTTGCCCACCGCA--------AAGTACAGTTATTTTATTTAACAGCACA Homonota_taragui_LJAMMCNP_14420 GCTTGCCCACCGCA--------AAGTACAGTTATTTTATTTAACAGCACA Homonota_uruguayensis_UFRGS_1568 GCTTGCCCACCGCA--------AAGTACAGTTATTTTATTTAACAGCACA Homonota_uruguayensis_UFRGS_2579 ?????????????????????????????????????????????????? Homonota_williamsii_LJAMMCNP_4467 GCTTGCCCACCGCA--------AAGTACAGTTATTTTATTTAACAGCACA Homonota_williamsii_LJAMMCNP_6517 GCTTGCCCACCGCA--------AAGTACAGTTATTTTATTTAACAGCACA Homonota_whitii_LJAMMCNP_12110 GCTTGCCCACCGCA--------AAGTACAGTTATTTTATTTAACAGCACA Homonota_whitii_LJAMMCNP_14388 GCTTGCCCACCGCA--------AAGTACAGTTATTTTATTTAACAGCACA Homonota_andicola_LJAMMCNP_12490 ATTGAATTGCAGTTCCCATAATCTAATGAAGCAAAAGTTCAACATTCATG Homonota_andicola_LJAMMCNP_12495 ATTGAATTGCAGTTCCCATAATCTAATGAAGCAAAAGTTCAACATTCATG Homonota_borellii_LJAMMCNP_12116 ATTGAATTGCAGTTCCCATAATCTAACGAAGCAAAAGTTCAACATTCATG Homonota_borellii_LJAMMCNP_12125 ATTGAATTGCAGTTCCCATAATCTAACGAAGCAAAAGTTCAACATTCATG Homonota_darwinii_LJAMMCNP_11424 ATTGAATTGCAGTTCCCATAATCTAATGAAGCAAAAGTTCAACATTCATG Homonota_darwinii_LJAMMCNP_9266 ATTGAATTGCAGTTCCCATAATCTAATGAAGCAAAAGTTCAACATTCATG Homonota_spa_LJAMMCNP_10577 ATTGAATTGCAGTTCCCATAATCTAACGAAGCAAAAGTTCAACATTCATG Homonota_spa_LJAMMCNP_5047 ATTGAATTGCAGTTCCCATAATCTAACGAAGCAAAAGTTCAACATTCATG Garthia_gaudichaudi_IBEG1_2 ATTGAATTGCAGTTCCCATAATCTAACGAAGCAAAAGTTCAACATTCATG Garthia_gaudichaudi_IBEG1_1 ATTGAATTGCAGTTCCCATAATCTAACGAAGCAAAAGTTCAACATTCATG Gymnodactylus_geckoides_LG_1050 ATTGAATTGCAGTTCCCATAATCTAACGAAGCAAAAGTTCAACATTCATG Gymnodactylus_geckoides_LG_911 ATTGAATTGCAGTTCCCATAATCTAACGAAGCAAAAGTTCAACATTCATG Phyllodactylus_kofordi_TG_266 ATTGAATTGCAGTTCCCATAATCTAACGAAGCAAAAGTTCAACATTCATG Phyllopezus_przewalskii_LJAMMCNP_12089 ATTGAATTGCAGTTCCCATAATCTAACGAAGCAAAAGTTCAACATTCATG Phyllopezus_pollicaris_CHUNB_57388 ATTGAATTGCAGTTCCCATAATCTAACGAAGCAAAAGTTCAACATTCATG Homonota_rupicola_RUPI_1 ATTGAATTGCAGTTCCCATAATCTAACGAAGCAAAAGTTCAACATTCATG Homonota_rupicola_RUPI_2 ATTGAATTGCAGTTCCCATAATCTAACGAAGCAAAAGTTCAACATTCATG Homonota_spb_MNHNP_11406 ATTGAATTGCAGTTCCCATAATCTAACGAAGCAAAAGTTCAACATTCATG Homonota_spb_MNHNP_11409 ATTGAATTGCAGTTCCCATAATCTAACGAAGCAAAAGTTCAACATTCATG Homonota_taragui_LJAMMCNP_14419 ATTGAATTGCAGTTCCCATAATCTAACGAAGCAAAAGTTCAACATTCATG Homonota_taragui_LJAMMCNP_14420 ATTGAATTGCAGTTCCCATAATCTAACGAAGCAAAAGTTCAACATTCATG Homonota_uruguayensis_UFRGS_1568 ATTGAATTGCAGTTCCCATAATCTAACGAAGCAAAAGTTCAACATTCATG Homonota_uruguayensis_UFRGS_2579 ?????????????????????????????????????????????????? Homonota_williamsii_LJAMMCNP_4467 ATTGAATTGCAGTTCCCATAATCTAATGAAGCAAAAGTTCAACATTCATG Homonota_williamsii_LJAMMCNP_6517 ATTGAATTGCAGTTCCCATAATCTAATGAAGCAAAAGTTCAACATTCATG Homonota_whitii_LJAMMCNP_12110 ATTGAATTGCAGTTCCCATAATCTAATGAAGCAAAAGTTCAACATTCATG Homonota_whitii_LJAMMCNP_14388 ATTGAATTGCAGTTCCCATAATCTAATGAAGCAAAAGTTCAACATTCATG Homonota_andicola_LJAMMCNP_12490 AATTGCATCTATCACTGGAAAAAAAA--TGGCTGAATTTCT--------- Homonota_andicola_LJAMMCNP_12495 AATTGCATCTATCACTGGAAAAAAAA--TGGCTGAATTTCT--------- Homonota_borellii_LJAMMCNP_12116 AATTGCATCTATCACTGGAAAAAAAAA-TGGCTGAGTCTCT--------- Homonota_borellii_LJAMMCNP_12125 AATTGCATCTATCACTGGAAAAAAAAA-TGGCTGAGTCTCT--------- Homonota_darwinii_LJAMMCNP_11424 AATTGCATCTATCACTGGAAAAAAAA--TGGCTGAATTTCT--------- Homonota_darwinii_LJAMMCNP_9266 AATTGCATCTATCACTGGAAAAAAAA--TGGCTGAATTTCT--------- Homonota_spa_LJAMMCNP_10577 AATTGCATCTATCACTGGAAAAAAAA--TGGCTGAGTTTCT--------- Homonota_spa_LJAMMCNP_5047 AATTGCATCTATCACTGGAAAAAAAA--TGGCTGAGTTTCT--------- Garthia_gaudichaudi_IBEG1_2 AATTGCATCTATCACTGGAAAAAAA---TGGCTGAGTTTCT--------- Garthia_gaudichaudi_IBEG1_1 AATTGCATCTATCACTGGAAAAAAA---TGGCTGAGTTTCT--------- Gymnodactylus_geckoides_LG_1050 AATTGCATCTATCACTGGAAAAAAA---TGGCTGAGTTTCTGGCTGAGTT Gymnodactylus_geckoides_LG_911 AATTGCATCTATCACTGGAAAAAAA---TGGCTGAGTTTCTGGCTGAGTT Phyllodactylus_kofordi_TG_266 AATTGCATCTATCACTGGAAAAAAAA--TGGCTGAGTTTCT--------- Phyllopezus_przewalskii_LJAMMCNP_12089 AATTGCATCTATCACTGGAAAAAAA---TGGCTGAGTTTCT--------- Phyllopezus_pollicaris_CHUNB_57388 AATTACATCTATCACTGGAAAAAAAA--TGGCTGAGTTTCT--------- Homonota_rupicola_RUPI_1 AATTGCATCTATCACTGGAAAAAAAA--TGGCTGAGTCTCT--------- Homonota_rupicola_RUPI_2 AATTGCATCTATCACTGGAAAAAAAA--TGGCTGAGTCTCT--------- Homonota_spb_MNHNP_11406 AATTGCATCTATCACTGGAAAAAAAA--TGGCTGAGTTTCT--------- Homonota_spb_MNHNP_11409 AATTGCATCTATCACTGGAAAAAAAA--TGGCTGAGTTTCT--------- Homonota_taragui_LJAMMCNP_14419 AATTGCATCTATCACTGGAAAAAAAA--TGGCTGAGTCTCT--------- Homonota_taragui_LJAMMCNP_14420 AATTGCATCTATCACTGGAAAAAAAA--TGGCTGAGTCTCT--------- Homonota_uruguayensis_UFRGS_1568 AATTGCATCTATCACTGGAAAAAAAAAATGGCTGAGTCTCT--------- Homonota_uruguayensis_UFRGS_2579 ?????????????????????????????????GAGTCTCT--------- Homonota_williamsii_LJAMMCNP_4467 AATTGCATCTATCACTGGAAAAAAAA--TGGCTGAATTTCT--------- Homonota_williamsii_LJAMMCNP_6517 AATTGCATCTATCACTGGAAAAAAAA--TGGCTGAATTTCT--------- Homonota_whitii_LJAMMCNP_12110 AATTGCATCTATCACTGGAAAAAAAA--TGGCTGAATTTCT--------- Homonota_whitii_LJAMMCNP_14388 AATTGCATCTATCACTGGAAAAAAAA--TGGCTGAATTTCT--------- Homonota_andicola_LJAMMCNP_12490 ---ACTGTAAAATTGCAAGCTGTTCTGGAATAACCCAAAAAAAGAGCTGC Homonota_andicola_LJAMMCNP_12495 ---ACTGTAAAATTGCAAGCTGTTCTGGAATAACCCAAAAAAAGAGCTGC Homonota_borellii_LJAMMCNP_12116 ---TCTGTAAAATTGCAAGCTGTTCTGGAATAACCCAAAAAA-GAGCTGC Homonota_borellii_LJAMMCNP_12125 ---TCTGTAAAATTGCAAGCTGTTCTGGAATAACCCAAAAAA-GAGCTGC Homonota_darwinii_LJAMMCNP_11424 ---ACTGTAAAATTGCAAGCTGTTCTGGAATAACCCAAAAAA-GAGCTGC Homonota_darwinii_LJAMMCNP_9266 ---ACTGTAAAATTGCAAGCTGTTCTGGAATAACCCAAAAAA-GAGCTGC Homonota_spa_LJAMMCNP_10577 ---TCTGTAAAATTGCAAGCTGTTCTGGAATAACCCAAAAAA-GAGCTGC Homonota_spa_LJAMMCNP_5047 ---TCTGTAAAATTGCAAGCTGTTCTGGAATAACCCAAAAAA-GAGCTGC Garthia_gaudichaudi_IBEG1_2 ---TCTCTAAAATTGCAAGCTGTTCTGGAATAACCCAAAAAA-GAGCTGC Garthia_gaudichaudi_IBEG1_1 ---TCTCTAAAATTGCAAGCTGTTCTGGAATAACCCAAAAAA-GAGCTGC Gymnodactylus_geckoides_LG_1050 TCTTCTGTAAAATTGCAAGCTGTTCTGGAATAACCCAAAAAA-GAGCTGC Gymnodactylus_geckoides_LG_911 TCTTCTGTAAAATTGCAAGCTGTTCTGGAATAACCCAAAAAA-GAGCTGC Phyllodactylus_kofordi_TG_266 ---TCTGTAAAATTGCAAGCTGTTCTGGAATAACCCAAAAAA-GAGCTGC Phyllopezus_przewalskii_LJAMMCNP_12089 ---TCTGTAAAATTGCAAGCTGTTCTGGAATAACCCAAAAAA-GAGCTGC Phyllopezus_pollicaris_CHUNB_57388 ---TCTGTAAAATTGCAAGCTGTTCTGGAATAACCCAAAAAA-GAGCTGC Homonota_rupicola_RUPI_1 ---TCTGTAAAATTGCAAGCTGTTCTGGAATAACCCAAAAAA-GAGCTGC Homonota_rupicola_RUPI_2 ---TCTGTAAAATTGCAAGCTGTTCTGGAATAACCCAAAAAA-GAGCTGC Homonota_spb_MNHNP_11406 ---TCTGTAAAATTGCAAGCTGTTCTGGAATAACCCAAAAAA-GAGCTGC Homonota_spb_MNHNP_11409 ---TCTGTAAAATTGCAAGCTGTTCTGGAATAACCCAAAAAA-GAGCTGC Homonota_taragui_LJAMMCNP_14419 ---TCTGTAAAATTGCAAGCTGTTCTGGAATAACCCAAAAAA-GAGCTGC Homonota_taragui_LJAMMCNP_14420 ---TCTGTAAAATTGCAAGCTGTTCTGGAATAACCCAAAAAA-GAGCTGC Homonota_uruguayensis_UFRGS_1568 ---TCTGTAAAATTGCAAGCTGTTCTGGAATAACCCAAAAAA-GAGCTGC Homonota_uruguayensis_UFRGS_2579 ---TCTGTAAAATTGCAAGCTGTTCTGGAATAACCCAAAAAA-GAGCTGC Homonota_williamsii_LJAMMCNP_4467 ---ACTGTAAAATTGCAAGCTGTTCTGGAATAACCCAAAAAA-GAGCTGC Homonota_williamsii_LJAMMCNP_6517 ---ACTGTAAAATTGCAAGCTGTTCTGGAATAACCCAAAAAA-GAGCTGC Homonota_whitii_LJAMMCNP_12110 ---ACTGTAAAATTGCAAGCTGTTCTGGAATAACCCAAAAAAAGAGCTGC Homonota_whitii_LJAMMCNP_14388 ---ACTGTAAAATTGCAAGCTGTTCTGGAATAACCCAAAAAAAGAGCTGC Homonota_andicola_LJAMMCNP_12490 CTTGAGAAAAACCGGCGTCTTCAAACAGCTTTTTGTTTCATTCATTGCCC Homonota_andicola_LJAMMCNP_12495 CTTGAGAAAAACCGGCGTCTTCAAACAGCTTTTTGTTTCATTCATTGCCC Homonota_borellii_LJAMMCNP_12116 CTTGAGAAAAACCGGCGTCTTCAAACAGCTTTTTGTTTCATTCATTGCCC Homonota_borellii_LJAMMCNP_12125 CTTGAGAAAAACCGGCGTCTTCAAACAGCTTTTTGTTTCATTCATTGCCC Homonota_darwinii_LJAMMCNP_11424 CTTGAGAAAAACCGGCGTCTTCAAACAGCTTTTTGTTTCATTCATTGCCC Homonota_darwinii_LJAMMCNP_9266 CTTGAGAAAAACCGGCGTCTTCAAACAGCTTTTTGTTTCATTCATTGCCC Homonota_spa_LJAMMCNP_10577 CTTGAGAAAAACCGGCGTCTTCAAACAGCTTTTTATTTCATTCATTGCCC Homonota_spa_LJAMMCNP_5047 CTTGAGAAAAACCGGCGTCTTCAAACAGCTTTTTATTTCATTCATTGCCC Garthia_gaudichaudi_IBEG1_2 CTTGAGAAAAACCGGCGTCTTCAAACAGCTTTTTATTTCATTCACTGCCC Garthia_gaudichaudi_IBEG1_1 CTTGAGAAAAACCGGCGTCTTCAAACAGCTTTTTATTTCATTCACTGCCC Gymnodactylus_geckoides_LG_1050 CTTGAGAAAAACCAGCGTCTTCAAACAGCTTTTTATTTCATTCACTGCCC Gymnodactylus_geckoides_LG_911 CTTGAGAAAAACCAGCGTCTTCAAACAGCTTTTTATTTCATTCACTGCCC Phyllodactylus_kofordi_TG_266 CTTGAGAAAAACCGGCGTCTTCAAACAGCTTTTTATTTCATTCACTGCCC Phyllopezus_przewalskii_LJAMMCNP_12089 CTTGAGAAAAACCAGCGTCTTCAAACAGCTTTTTATTTCATTCACTGCCC Phyllopezus_pollicaris_CHUNB_57388 CTTGAGAAAAACCAGCGTCTTCAAACAGCTTTTTATTTCATTCACTGCCC Homonota_rupicola_RUPI_1 CTTGARAAAAACCGGCGTCTTCAAACAGCTTTTTGTTTCATTCATTGCCC Homonota_rupicola_RUPI_2 CTTGARAAAAACCGGCGTCTTCAAACAGCTTTTTGTTTCATTCATTGCCC Homonota_spb_MNHNP_11406 CTTGAGAAAAACCGGCGTCTTCAAACAGCTTTTTATTTCATTCATTGCCC Homonota_spb_MNHNP_11409 CTTGAGAAAAACCGGCGTCTTCAAACAGCTTTTTATTTCATTCATTGCCC Homonota_taragui_LJAMMCNP_14419 CTTGAGAAAAACCGGCGTCTTCAAACAGCTTTTTGTTTCATTCATTGCCC Homonota_taragui_LJAMMCNP_14420 CTTGAGAAAAACCGGCGTCTTCAAACAGCTTTTTGTTTCATTCATTGCCC Homonota_uruguayensis_UFRGS_1568 CTTGAGAAAAACCGGCGTCTTCAAACAGCTTTTTGTTTCATTCATTGCCC Homonota_uruguayensis_UFRGS_2579 CTTGAGAAAAACCGGCGTCTTCAAACAGCTTTTTGTTTCATTCATTGCCC Homonota_williamsii_LJAMMCNP_4467 CTTGAGAAAAACCGGCGTCTTCAAACAGCTTTTTGTTTCATTCATTGCCC Homonota_williamsii_LJAMMCNP_6517 CTTGAGAAAAACCGGCGTCTTCAAACAGCTTTTTGTTTCATTCATTGCCC Homonota_whitii_LJAMMCNP_12110 CTTGAGAAAAACCGGCGTCTTCAAACAGCTTTTTGTTTCATTCATTGCCC Homonota_whitii_LJAMMCNP_14388 CTTGAGAAAAACCGGCGTCTTCAAACAGCTTTTTGTTTCATTCATTGCCC Homonota_andicola_LJAMMCNP_12490 GATACTCCCCTGCCAAATGTCCCAACGTGTGAGATTT-ATATAATCTTCT Homonota_andicola_LJAMMCNP_12495 GATACTCCCCTGCCAAATGTCCCAACGTGTGAGATTT-ATATAATCTTCT Homonota_borellii_LJAMMCNP_12116 GATACTCCCCTGCCAAATGTCCCAACGTGTGAGATTT-ATATAATCTTCT Homonota_borellii_LJAMMCNP_12125 GATACTCCCCTGCCAAATGTCCCAACGTGTGAGATTT-ATATAATCTTCT Homonota_darwinii_LJAMMCNP_11424 GATACTCCCCTGCCAAATGTCCCAACGTGTGAGATTT-ATATAATCTTCT Homonota_darwinii_LJAMMCNP_9266 GATACTCCCCTGCCAAATGTCCCAACGTGTGAGATTT-ATATAATCTTCT Homonota_spa_LJAMMCNP_10577 GATACTCCCCTGCCAAATGTCCCAACGTGTGAGATTT-ATATAATCTTCT Homonota_spa_LJAMMCNP_5047 GATACTCCCCTGCCAAATGTCCCAACGTGTGAGATTT-ATATAATCTTCT Garthia_gaudichaudi_IBEG1_2 GTTACTCCCCTGCCAAATGTCCCAACATGTGAGATTT-ATATAATCTTCT Garthia_gaudichaudi_IBEG1_1 GTTACTCCCCTGCCAAATGTCCCAACATGTGAGATTT-ATATAATCTTCT Gymnodactylus_geckoides_LG_1050 GATACTCCCCAGCCAAATGTCCCAACATGTGAGATTT-ATATATACTTCT Gymnodactylus_geckoides_LG_911 GATACTCCCCAGCCAAATGTCCCAACATGTGAGATTT-ATATATACTTCT Phyllodactylus_kofordi_TG_266 GATACTCCCCTGCCAAATGTCCCAACATGTGAGATTA-ATATTATCTTCT Phyllopezus_przewalskii_LJAMMCNP_12089 GATACTCCCCAGCCAAATGTCCCAACATGTGAGATTTTATATAATCTTCT Phyllopezus_pollicaris_CHUNB_57388 GATACTCCCCAGCCAAATGTCCCAACATGTGAGATTTTATATAATCTTCT Homonota_rupicola_RUPI_1 GATACTCCCCTGCCAAATGTCCCAACGTGTGAGATTT-ATATAA---TCT Homonota_rupicola_RUPI_2 GATACTCCCCTGCCAAATGTCCCAACGTGTGAGATTT-ATATAA---TCT Homonota_spb_MNHNP_11406 GATACTCCCCTGCCAAATGTCCCAACGTGTGAGATTT-ATATAATCTTCT Homonota_spb_MNHNP_11409 GATACTCCCCTGCCAAATGTCCCAACGTGTGAGATTT-ATATAATCTTCT Homonota_taragui_LJAMMCNP_14419 GATACTCCCCTGCCAAATGTCCCAACGTGTGAGATTT-ATATAATCTTCT Homonota_taragui_LJAMMCNP_14420 GATACTCCCCTGCCAAATGTCCCAACGTGTGAGATTT-ATATAATCTTCT Homonota_uruguayensis_UFRGS_1568 GATACTCCCCTGCCAAATGTCCCAACGTGTGAGATTT-ATATAATCTTCT Homonota_uruguayensis_UFRGS_2579 GATACTCCCCTGCCAAATGTCCCAACGTGTGAGATTT-ATATAATCTTCT Homonota_williamsii_LJAMMCNP_4467 GATACTCCCCTGCCAAATGTCCCAACGTGTGAGATTT-ATATAATCTTCT Homonota_williamsii_LJAMMCNP_6517 GATACTCCCCTGCCAAATGTCCCAACGTGTGAGATTT-ATATAATCTTCT Homonota_whitii_LJAMMCNP_12110 GATACTCCCCTGCCAAATGTCCCAACGTGTGAGATTT-ATATAATCTTCT Homonota_whitii_LJAMMCNP_14388 GATACTCCCCTGCCAAATGTCCCAACGTGTGAGATTT-ATATAATCTTCT Homonota_andicola_LJAMMCNP_12490 CAGTTAATACAAAAGAGTAACAGAAGCCTTTGATTCAATTTTTAAACTCA Homonota_andicola_LJAMMCNP_12495 CAGTTAATACAAAAGAGTAACAGAAGCCTTTGATTCAATTTTTAAACTCA Homonota_borellii_LJAMMCNP_12116 CAGTTAATACAAAAGAGTAACAGAAGCCTTTGATTCAATTTTTAAACTCA Homonota_borellii_LJAMMCNP_12125 CAGTTAATACAAAAGAGTAACAGAAGCCTTTGATTCAATTTTTAAACTCA Homonota_darwinii_LJAMMCNP_11424 CAGTTAATACAAAAGAGTAACAGAAGCCTTTGATTCAATTTTTAAACTCA Homonota_darwinii_LJAMMCNP_9266 CAGTTAATACAAAAGAGTAACAGAAGCCTTTGATTCAATTTTTAAACTCA Homonota_spa_LJAMMCNP_10577 CAGTTAATACAAAAGAGTAACAGAAGCCTTTGATTCAATTTTTAAACTCA Homonota_spa_LJAMMCNP_5047 CAGTTAATACAAAAGAGTAACAGAAGCCTTTGATTCAATTTTTAAACTCA Garthia_gaudichaudi_IBEG1_2 CAGTTAATACAAAAGAGTAACAGAAGCCTTTAATTCAATTTTTAAACTCA Garthia_gaudichaudi_IBEG1_1 CAGTTAATACAAAAGAGTAACAGAAGCCTTTAATTCAATTTTTAAACTCA Gymnodactylus_geckoides_LG_1050 CAGTTAATACAAAAAAGTAACAGAAGCCTTTGATTCAATTTTTAAACTCA Gymnodactylus_geckoides_LG_911 CAGTTAATACAAAAAAGTAACAGAAGCCTTTGATTCAATTTTTAAACTCA Phyllodactylus_kofordi_TG_266 CAGTTAATACAAAAAAGTAACAGAAGCCTTTGATTCAATTTTTAAACTCA Phyllopezus_przewalskii_LJAMMCNP_12089 CAGTTAATACAAAAGAGTAACAGAAGCCTTTGATTCAATTTTTAAACTCA Phyllopezus_pollicaris_CHUNB_57388 CAGTTAATACAAAAGAGTAACAGAAGCCTTTGATTCAATTTTTAAACTCA Homonota_rupicola_RUPI_1 CAGTTAATACAAAAGAGTAACAGAAGCCTTTGATTCAATTTTTAAACTCA Homonota_rupicola_RUPI_2 CAGTTAATACAAAAGAGTAACAGAAGCCTTTGATTCAATTTTTAAACTCA Homonota_spb_MNHNP_11406 CAGTTAATACAAAAGAGTAACAGAAGCCTTTGATTCAATTTTTAAACTCA Homonota_spb_MNHNP_11409 CAGTTAATACAAAAGAGTAACAGAAGCCTTTGATTCAATTTTTAAACTCA Homonota_taragui_LJAMMCNP_14419 CAGTTAATACAAAAGAGTAACAGAAGCCTTTGATTCAATTTTTAAACTCA Homonota_taragui_LJAMMCNP_14420 CAGTTAATACAAAAGAGTAACAGAAGCCTTTGATTCAATTTTTAAACTCA Homonota_uruguayensis_UFRGS_1568 CAGTTAATACAAAAGAGTAACAGAAGCCTTTGATTCAATTTTTAAACTCA Homonota_uruguayensis_UFRGS_2579 CAGTTAATACAAA????????????????????????????????????? Homonota_williamsii_LJAMMCNP_4467 CAGTTAATACAAAAGAGTAACAGAAGCCTTTGATTCAATTTTTAAACTCA Homonota_williamsii_LJAMMCNP_6517 CAGTTAATACAAAAGAGTAACAGAAGCCTTTGATTCAATTTTTAAACTCA Homonota_whitii_LJAMMCNP_12110 CAGTTAATACAAAAGAGTAACAGAAGCCTTTGATTCAATTTTTAAACTCA Homonota_whitii_LJAMMCNP_14388 CAGTTAATACAAAAGAGTAACAGA?????????????????????????? Homonota_andicola_LJAMMCNP_12490 GATGTAAAATTGTGGTGATATGATTTATAGTGTTGCCCTATTACCTGACC Homonota_andicola_LJAMMCNP_12495 GATGTAAAATTGTGGTGATATGATTTATAGTGTTGCCCTATTACCTGACC Homonota_borellii_LJAMMCNP_12116 GATGTAAAATTGTGGTGATATGATTTATAGTGTTGCCCTATTACCTGACC Homonota_borellii_LJAMMCNP_12125 GATGTAAAATTGTGGTGATATGATTTATAGTGTTGCCCTATTACCTGACC Homonota_darwinii_LJAMMCNP_11424 GATGTAAAATTGTGGTGATATGATTTATAGTGTTGCCCTATTACCTGACC Homonota_darwinii_LJAMMCNP_9266 GATGTAAAATTGTGGTGATATGATTTATAGTGTTGCCCTATTACCTGACC Homonota_spa_LJAMMCNP_10577 GATGTAAAATTGTGGTGATATGATTTATAGTGTTGCCCTATTACCTGACC Homonota_spa_LJAMMCNP_5047 GATGTAAAATTGTGGTGATATGATTTATAGTGTTGCCCTATTACCTGACC Garthia_gaudichaudi_IBEG1_2 GATGTAAAATTGTGGTGATATGATTTATAGTGTTGCCCTATTACCTGACC Garthia_gaudichaudi_IBEG1_1 GATGTAAAATTGTGGTGATATGATTTATAGTGTTGCCCTATTACCTGACC Gymnodactylus_geckoides_LG_1050 GATGTAAAATTGTGGTGATATGATTTATAGTGTTGCCCTATTACCTGACC Gymnodactylus_geckoides_LG_911 GATGTAAAATTGTGGTGATATGATTTATAGTGTTGCCCTATTACCTGACC Phyllodactylus_kofordi_TG_266 GATGTAAAATTGTGGTGATATGATTTATAGTGTTGCCCTATTACCTGACC Phyllopezus_przewalskii_LJAMMCNP_12089 GATGTAAAATTGTGGTGATATGATTTATAGTGTTGCCCTATTACCTGACC Phyllopezus_pollicaris_CHUNB_57388 GATGTAAAATTGTGGTGATATGATTTATAGTGTTGCCCTATTACCTGACC Homonota_rupicola_RUPI_1 GATGTAAAATTGTGGTGATATGATTTATAGTGTTGCCCTATTACCTGACC Homonota_rupicola_RUPI_2 GATGTAAAATTGTGGTGATATGATTTATAGTGTTGCCCTATTACCTGACC Homonota_spb_MNHNP_11406 GATGTAAAATTGTGGTGATATGATTTATAGTGTTGCCCTATTACCTGACC Homonota_spb_MNHNP_11409 GATGTAAAATTGTGGTGATATGATTTATAGTGTTGCCCTATTACCTGACC Homonota_taragui_LJAMMCNP_14419 GATGTAAAATTGTGGTGATATGATTTATAGTGTTGCCCTATTACCTGACC Homonota_taragui_LJAMMCNP_14420 GATGTAAAATTGTGGTGATATGATTTATAGTGTTGCCCTATTACCTGACC Homonota_uruguayensis_UFRGS_1568 GATGTAAAATTGTGGTGATATGATTTATAGTGTTGCCCTATTACCTGACC Homonota_uruguayensis_UFRGS_2579 ?????????????????????????????????????????????????? Homonota_williamsii_LJAMMCNP_4467 GATGTAAAATTGTGGTGATATGATTTATAGTGTTGCCCTATTACCTGACC Homonota_williamsii_LJAMMCNP_6517 GATGTAAAATTGTGGTGATATGATTTATAGTGTTGCCCTATTACCTGACC Homonota_whitii_LJAMMCNP_12110 GATGTAAAATTGTGGTGATATGATTTATAGTGTTGCCCTATTACCTGACC Homonota_whitii_LJAMMCNP_14388 ?????????????????????????????????????????????????? Homonota_andicola_LJAMMCNP_12490 ATTGAACCTGCAGGTAACTCACGTAGTGCTCCACCTGCACGAGGGCCCCC Homonota_andicola_LJAMMCNP_12495 ATTGAACCTGCAGGTAACTCACGTAGTGCTCCACCTGCACGAGGGCCCCC Homonota_borellii_LJAMMCNP_12116 ATTGAACCTGCAGGTAACTCACGTAGTGCTCCACCTGCACGAGGGCCCCC Homonota_borellii_LJAMMCNP_12125 ATTGAACCTGCAGGTAACTCACGTAGTGCTCCACCTGCACGAGGGCCCCC Homonota_darwinii_LJAMMCNP_11424 ATTGAACCTGCAGGTAACTCACGTAGTGCTCCACCTGCACGAGGGCCCCC Homonota_darwinii_LJAMMCNP_9266 ATTGAACCTGCAGGTAACTCACGTAGTGCTCCACCTGCACGAGGGCCCCC Homonota_spa_LJAMMCNP_10577 ATTGAACCTGCAGGTAACTCACGTAGTGCTCCACCTGCACGAGGGCCCCC Homonota_spa_LJAMMCNP_5047 ATTGAACCTGCAGGTAACTCACGTAGTGCTCCACCTGCACGAGGGCCCCC Garthia_gaudichaudi_IBEG1_2 ATTGAACCTGCAGGTAACTCACGTAGTGCTCCACCTGCACGAGGGCCCCC Garthia_gaudichaudi_IBEG1_1 ATTGAACCTGCAGGTAACTCACGTAGTGCTCCACCTGCACGAGGGCCCCC Gymnodactylus_geckoides_LG_1050 ATTGAACCTGCAGGTAACTCACGTAGTGCTCCACCTACACGAGGTCCCCC Gymnodactylus_geckoides_LG_911 ATTGAACCTGCAGGTAACTCACGTAGTGCTCCACCTACACGAGGTCCCCC Phyllodactylus_kofordi_TG_266 ATTGAACCTGCAGGTAACTCACGTAGTGCTCCACCTGCACGAGGGCCCCC Phyllopezus_przewalskii_LJAMMCNP_12089 ATTGAACCTGCAGGTAACTCACGTAGTGCTCCACCTGCACGAGGGCCCCC Phyllopezus_pollicaris_CHUNB_57388 ATTGAACCTGCAGGTAACTCACGTAGTGCTCCACCTGCACGAGGGCCCCC Homonota_rupicola_RUPI_1 ATTGAACCTGCAGGTAACTCACGTAGTGCTCCACCTGCACGAGGGCCCCC Homonota_rupicola_RUPI_2 ATTGAACCTGCAGGTAACTCACGTAGTGCTCCACCTGCACGAGGGCCCCC Homonota_spb_MNHNP_11406 ATTGAACCTGCAGGTAACTCACGTAGTGCTCCACCTGCACGAGGGCCCCC Homonota_spb_MNHNP_11409 ATTGAACCTGCAGGTAACTCACGTAGTGCTCCACCTGCACGAGGGCCCCC Homonota_taragui_LJAMMCNP_14419 ATTGAACCTGCAGGTAACTCACGTAGTGCTCCACCTGCACGAGGGCCCCC Homonota_taragui_LJAMMCNP_14420 ATTGAACCTGCAGGTAACTCACGTAGTGCTCCACCTGCACGAGGGCCCCC Homonota_uruguayensis_UFRGS_1568 ATTGAACCTGCAGGTAACTCACGTAGTGCTCCACCTGCACGAGGGCCCCC Homonota_uruguayensis_UFRGS_2579 ?????????????????????????????????????????????????? Homonota_williamsii_LJAMMCNP_4467 ATTGAACCTGCAGGTAACTCACGTAGTGCTCCACCTGCACGAGGGCCCCC Homonota_williamsii_LJAMMCNP_6517 ATTGAACCTGCAGGTAACTCACGTAGTGCTCCACCTGCACGAGGGCCCCC Homonota_whitii_LJAMMCNP_12110 ATTGAACCTGCAGGTAACTCACGTAGTGCTCCACCTGCACGAGGGCCCCC Homonota_whitii_LJAMMCNP_14388 ?????????????????????????????????????????????????? ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 600; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 600; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 600; END; BEGIN TREES; Title RBMX_BI; ID 015b7b55323f11; LINK Taxa = RBMX; TRANSLATE [0] 1 Homonota_andicola_LJAMMCNP_12490, [1] 2 Homonota_andicola_LJAMMCNP_12495, [2] 3 Homonota_borellii_LJAMMCNP_12116, [3] 4 Homonota_borellii_LJAMMCNP_12125, [4] 5 Homonota_darwinii_LJAMMCNP_11424, [5] 6 Homonota_darwinii_LJAMMCNP_9266, [6] 7 Homonota_spa_LJAMMCNP_10577, [7] 8 Homonota_spa_LJAMMCNP_5047, [8] 9 Garthia_gaudichaudi_IBEG1_2, [9] 10 Garthia_gaudichaudi_IBEG1_1, [10] 11 Gymnodactylus_geckoides_LG_1050, [11] 12 Gymnodactylus_geckoides_LG_911, [12] 13 Phyllodactylus_kofordi_TG_266, [13] 14 Phyllopezus_przewalskii_LJAMMCNP_12089, [14] 15 Phyllopezus_pollicaris_CHUNB_57388, [15] 16 Homonota_rupicola_RUPI_1, [16] 17 Homonota_rupicola_RUPI_2, [17] 18 Homonota_spb_MNHNP_11406, [18] 19 Homonota_spb_MNHNP_11409, [19] 20 Homonota_taragui_LJAMMCNP_14419, [20] 21 Homonota_taragui_LJAMMCNP_14420, [21] 22 Homonota_uruguayensis_UFRGS_1568, [22] 23 Homonota_uruguayensis_UFRGS_2579, [23] 24 Homonota_williamsii_LJAMMCNP_4467, [24] 25 Homonota_williamsii_LJAMMCNP_6517, [25] 26 Homonota_whitii_LJAMMCNP_12110, [26] 27 Homonota_whitii_LJAMMCNP_14388; TREE con_50_majrule = ((13:0.02463857,(9:0.001671014,10:0.001711973):0.02613133,(14:0.003858648,15:0.01065231,(11:0.003742255,12:0.001643738):0.02100705):0.009814168):0.006157215,((7:0.001720231,8:0.00170246,(18:0.001614759,19:0.001727195):0.003859197):0.003873705,((1:0.001754647,2:0.001704353,26:0.001667983,(27:0.00222743,(5:0.00163865,6:0.001678183,24:0.001739552,25:0.001683175):0.003763687):0.003670588):0.01035196,(3:0.001683106,4:0.001705952,16:0.002083457,17:0.002023387,22:0.002040003,23:0.002851595,(20:0.002022645,21:0.002026829):0.004390357):0.006435567):0.01099106):0.006157215); END; BEGIN TREES; Title RBMX_ML; ID 015b7b8d01f435; LINK Taxa = RBMX; TRANSLATE [0] n0 Homonota_andicola_LJAMMCNP_12490, [1] n1 Homonota_andicola_LJAMMCNP_12495, [2] n2 Homonota_borellii_LJAMMCNP_12116, [3] n3 Homonota_borellii_LJAMMCNP_12125, [4] n4 Homonota_darwinii_LJAMMCNP_11424, [5] n5 Homonota_darwinii_LJAMMCNP_9266, [6] n6 Homonota_spa_LJAMMCNP_10577, [7] n7 Homonota_spa_LJAMMCNP_5047, [8] n8 Garthia_gaudichaudi_IBEG1_2, [9] n9 Garthia_gaudichaudi_IBEG1_1, [10] n10 Gymnodactylus_geckoides_LG_1050, [11] n11 Gymnodactylus_geckoides_LG_911, [12] n12 Phyllodactylus_kofordi_TG_266, [13] n13 Phyllopezus_przewalskii_LJAMMCNP_12089, [14] n14 Phyllopezus_pollicaris_CHUNB_57388, [15] n15 Homonota_rupicola_RUPI_1, [16] n16 Homonota_rupicola_RUPI_2, [17] n17 Homonota_spb_MNHNP_11406, [18] n18 Homonota_spb_MNHNP_11409, [19] n19 Homonota_taragui_LJAMMCNP_14419, [20] n20 Homonota_taragui_LJAMMCNP_14420, [21] n21 Homonota_uruguayensis_UFRGS_1568, [22] n22 Homonota_uruguayensis_UFRGS_2579, [23] n23 Homonota_williamsii_LJAMMCNP_4467, [24] n24 Homonota_williamsii_LJAMMCNP_6517, [25] n25 Homonota_whitii_LJAMMCNP_12110, [26] n26 Homonota_whitii_LJAMMCNP_14388; TREE tree_1 = ((((n8:0.00000080529311744192,n9:0.00000080529311744192):0.021490449163923443,(((((((n23:0.00000080529311744192,n24:0.00000080529311744192):0.00000080529311744192,n4:0.00000080529311744192):0.00000080529311744192,n5:0.00000080529311744192):0.0017552042504076757,n26:0.00000080529311744192):0.00000080529311744192,((n1:0.00000080529311744192,n25:0.00000080529311744192):0.00000080529311744192,n0:0.00000080529311744192):0.00000080529311744192):0.007198830117327056,(((n16:0.00000080529311744192,(n15:0.00000080529311744192,((n2:0.00000080529311744192,n3:0.00000080529311744192):0.00000080529311744192,n21:0.00000080529311744192):0.00000080529311744192):0.00000080529311744192):0.00000080529311744192,n22:0.00000080529311744192):0.00000080529311744192,(n19:0.00000080529311744192,n20:0.00000080529311744192):0.00250429638209617):0.005349415602068398):0.007141360232443302,((n6:0.00000080529311744192,n7:0.00000080529311744192):0.00000080529311744192,(n17:0.00000080529311744192,n18:0.00000080529311744192):0.0017558687816998993):0.0017690741818347897):0.008283148219644423):0.001681378325309573,n12:0.020103774806107734):0.0032143331270649902,((n11:0.00000080529311744192,n10:0.0017239372649568633):0.016252682725515544,(n13:0.0017197596145090502,n14:0.007481281666465349):0.00000080529311744192):0.0032143331270649902); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1493023234587; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 1629085574642710218; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 5725522499176686546; mqVersion 320; checksumv 0 3 2076672116 null getNumChars 600 numChars 600 getNumTaxa 27 numTaxa 27 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 332350.0 sumSquares -4.6116860184273838E18 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1002 781; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #1629085574642710218 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #1629085574642710218; getWindow; tell It; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 902 709; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.arrow; endTell; setActive; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #1629085574642710218 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 015b7b55323f11; toggleUseWeights off; endTell; setAssignedID 1915.1492422835915.5432985471794878170; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 902 709; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.reroot; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; makeTreeWindow #1629085574642710218 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 2; setTreeBlockID 015b7b8d01f435; toggleUseWeights off; endTell; setAssignedID 4162.1492426492709.4853856373219936356; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 902 709; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #5725522499176686546 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 902 709; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;