NEXUS
[File created by TreeBASE:  1/16/09  15:36:13]
[Matrix accession#: M3971]

BEGIN TAXA;
	TITLE M3971;
	DIMENSIONS  NTAX=10;
	TAXLABELS
		Psammoneis_senegalensis_s0387	Dimeregramma_minor_var._nana_s0355	Talaroneis_posidoniae	Neofragilaria_nicobarica_s0371	Plagiogramma_atomus_s0330	Psammogramma_vigoensis_s0391	Psammoneis_japonica_s0305	Psammoneis_pseudojaponica_s0356	Asteroplanus_karyanus_p132	Asterionellopsis_japonica_p119
	;
END;

BEGIN CHARACTERS;
	TITLE M3971;
	DIMENSIONS NCHAR=576;
	FORMAT DATATYPE = DNA MISSING = ? GAP = -  ;
	MATRIX
		Psammoneis_senegalensis_s0387            TAAGCATATAATTAAGCGGAGGAAAAGAAACTAACTAGGATTCCCCTAGTAAGGGCGACTGAAGCGGGAATAGCTCATATTGTGAATCTGTGCGCACCGAATTGTGGTCTAGAGAAGCATGTGTTTGGCACGCCGGGTCAAGTCCCTTGGAAGAGGGCAGCTGAGAGGGTGAGACTCCCGTTCGTACCTGGGCCA---GACACTAGCTTTCGACGAGTCGAGTTGTTTGGGATTGCAGCTCAAAGCCGGTGGTAAATTCCATCTAAAGCTAAATATGGGTGGGAGACCGATAGTGTACAAGTACCGTGAGGGAAAGATGCAAAGAACTTTGAAAAGAGAGTTAAAGAGTACCTGAAATTGCTGAAAGGGAAGCGAAGGAAACCAGTGYTTC-GCCTTGTCATACTTCTCCTCCTGCTTGCGGGTGGGGCGCTGTGGCTTGGCAATAGTCAGCCTTGGTTAGTTTCGGTAGAAACCTGTTGCTGGGAGGTAGGTCC--GGACTGATACCAGTAACAAGTGTACCGGGAAGGACCGAGTGCTGACGAAATGGTTTTCTTTACCCCGTCTTGAAACCGG
		Dimeregramma_minor_var._nana_s0355       TAAGCATATAATTAAGCGGAGGAAAAGAAACTAACCAGGATTCCCCTAGTAAGGGCGACTGAAGCGGGAAGAGCTCATAATGTGAATCTGCGCGCGCCGAATTGTGGTCTGGAGAGGCATGTGTTTGGCACGCCGGGCCAAGTCCCTTGGAAAAGGGCAGCTGAGAGGGTGAGACTCCCGTAATTGCCTGGGCCATTTGACACTAGCTTTCTACGAGTCGAGTTGTTTGGGATTGCAGCTCAAATTGGGTGGTAAATTCCATCTAAAGCTAAATACCGGTGGGAGACCGATAGCGTACAAGTACCGTGAGGGAAAGATGCAAAGAACTTTGAAAAGAGAGTTAAAGAGTACCTGAAATTGCTGAAAGGGAAGCGAAGGAAACYAGTGCTTT-GCTGCTTCATAYTTCCCCTCCTGCTTGCGGGTGGGGCGCTGTGGCGCGGCGAAAGTCAGCCTTGCTTGGTCTCGGCAGATACCTGGTCTCGGGAGGTAGGACCATGGTCTGATACCGTGGTCATGTATGCTGGGACTGACCGAG-GCTGACAAAATGGTTTTCTTTACCCCGTCTTGAAACCGG
		Talaroneis_posidoniae                    TAAGCATATAATTAAGCGGAGGAAA-GAAACTAACCAGGATTCCCCTAGTAAGGGCGACTGAAGCGGGAATAGCTCACACTGTGAATCTGCGCGCGCCGAATTGTGGTCTGTAGAAGTATGTGTTTGGCACGCCGGGCCAAGTTCCTTGGAACAGGGCAGCTAAGAGGGTGAGACTCCCGTAATTGCCCGGGCCATTTGACACTTGCTTTCGACGAGTCGAGTTGTTTGGGATTGCAGCTCAAAGTCGGTGGTAAATTCCATCTAAAGCTAAATATGGGTGGGAGACCGATAGCGTACAAGTACCGTGAGGGAAAGATGCAAAGAACTTTGAAAAGAGAGTTAAAGAGTACCTGAAATTGCTGAAAGGGAAGCGAAGGAAACCAGTGATTT-GCTTTGTCATATTTCTCCTCCCGCTTGCGGGTGGGGCGCTGTGGCKCTGCATGTGTCATTTTTGGCTGGCCTCGACAGAAACCTGGCTTTGGGAGGTAGGTCCATGGGCTGATACCATTGCCGTGTGTGTCGGGGGCGACTGAG-GTTGACGAAATGGTTTTCTTTACCCCGTCTAGAAACCGG
		Neofragilaria_nicobarica_s0371           TAAGCATATAATTAAGCGGAGGAAAAGAAACTAACTAGGATTCCCTTAGTAAGGGCGACTGAAGCGGGAAAAGCTCATAATGTGAATCTGCGCGCGCCGAATTGTGGTCTRTAGAAGCATGTGTTTGGCACGCCGGGCCAAGTCCCTTGGAAAAGGGCAGCCAAGAGGGTGAGACTCCCGTACCTGCCTGGGCCATTTGACACTAGCTTTCAACGAGTCGAGTTGTTTGGGATTGCAGCTCAAATTGGGTGGTAAATTCCATCTAAAGCTAAATATTGGTGGGAGACCGATAGCGTACAAGTACCGTGAGGGAAAGATGCAAAGAACTTTGAAAAGAGAGTTAAAGAGTACCTGAAATTGCTGAAAGGGAAGCGAAGGAAACCAGTGCCTT-GCTTTGTCATACTTCCTCCTCTGCTTGCGGATGAGGCGCTGTGGCTTTGCATGGGTCAGCCTTGGTTGATCTCGGCAGAAACCTGCWTGCAGGAGGTAGGCCCATGGGCTGATACTGTAAGCATGTGTGCTGGGGGTGACTTAG-GTTGACAAAATGGTTTTCTTTACCCCGTCTTGAAACCGG
		Plagiogramma_atomus_s0330                TAAGCATATAATTAAGCGGAGGAAGAGAAACTAACCAGGATTCCCCCAGTAAGGGCGACTGAAGCGGGACTAGCTCATTCTGTGAATCTGCGCGCGCCGAATTGTGGTCTGTAGATGCAAGTGTTTGGCAGGCCGGGCCAAGTCCCTTGGAAGAGGGCAGCCGAGAGGGTGAGACTCCCGTGTTTGCCTGGGCCACTTGACACTTGCTTTCGAGGAGTCGGGTTGTTTGGGATTGCAGCTCGAATTGGGTGGTAAATTCCATCTAAAGCTAAATACTGGTGGGAGACCGATAGCGTACAAGTACCGTGAGGGAAAGATGCAAAGAACTTTGAAAAGAGAGTTAAAGAGTACCTGAAATTGCTGAGAGGGAAGCGAAGGAAACCAGTGCCTT-GCTCGGTCATAATTTCTCGGCTGCTTGCGGACGAGACGCTGTGGCTGTGCGCGGGTCACCTTTGGTTTGCCCCGATAGAAACCTGCCGTCTGGAGGAAGGCCC--GGGCCGATACGGTCGGCTAGTGTGTCGGGGGCGACCGAA-GGTGACGAAATGGTTTTCTTTACCCCGTCTTGAAACCGG
		Psammogramma_vigoensis_s0391             TAAGCATATAATTAAGCGGAGGAAAAGAAACTAAC-AGGATTCCCCTAGTAAGGGCGACTGAAGCGGGAAGAGCTCATAATGTGAATCTGCGCGCGCCGAATTGTGGTCTGTAGAAGCATGTGTTTGGCACGCCGGGTGAAGTCCCTTGGAAAAGGGCAGCTGAGAGGGTGAGACTCCCGTACTTGCCTGGGCCATTTGACACTAGCTTTCAACGAGTCGAGTTGTTTGGGATTGCAGCTCAAAGTTGGTGGTAAATTCCATCTAAAGCTAAATATGGGTGGGAGACCGATAGCGTACAAGTACCGTGAGGGAAAGATGCAAAGAACTTTGAAAAGAGAGTTAAAGAGTACCTGAAATTGCTGAAAGGGAAGCGAAGGAAACYAGTGTTTT-GCTTTGTCATACTTCTCCTCTCGCTTGCGGGTGGGGCGCTGTGGCGTTGCATGAGTCAGTTTTGGTTGGTCTCTGCAGATACCTGKCCTTGGGAGGTAGGTCC--GGGCTGTTACCATGGTCATGTGTGTTGGGAGTGACTGAT-GTTGACGAAATGGTTTTCTTTACCCCGTCTTGAAACCGG
		Psammoneis_japonica_s0305                TAAGCATATAATTAAGCGGAGGAAAAGAAACTAACCAGGATTCCCCTAGTAAGGGCGACTGAAGCGGGAATAGCTCATATTGTGAATCTGTGCGCACCGAATTGTGGTCTAGAGAAGCATGTGTTTGGCACGCCGGGTCAAGTCCCTTGGAAGAGGGCAGCTGAGAGGGTGAGACTCCCGTTCCTACCTGGGCCATTTGACACTAGCTTTCGACGAGTCGAGTTGTTTGGGATTGCAGCTCAAAGTCGGTGGTAAATTCCATCTAAAGCTAAATATGGGTGGGAGACCGATAGTGTACAAGTACCGTGAGGGAAAGATGCAAAGAACTTTGAAAAGAGAGTTAAAGAGTACCTGAAATTGCTGAAAGGGAAGCGAAGGAAACCAGTGTTGTTACCTTGTCATACTTCTCCTCCTGCTTGCGGGTGGAGCGCTGTGGCGTGGTAGTTGTCAGCCTTTGTTGGTCTCGGTAGAAACCTGTTGCTGGGAGGTAGGTCCCGGGACTGATACCAGTAGCGCGTGTGCCGGGAAGGACCGAGTGCTGACGAAATGGTTTTCTTTACCCCGTCTTGAAACCGG
		Psammoneis_pseudojaponica_s0356          TAAGCATATAATTAAGCGGAGGAAAAGAAACTAACCAGGATTCCCCTAGTAAGGGCGACTGAAGCGGGAATAGCTCATATTGTGAATCTGTGCGCACCGAATTGTGGTCTAGAGAAGCATGTGTTTGGCACGCCGGGTCAAGTCCCTTGGAAGAGGGCAGCTGAGAGGGTGAGACTCCCGTTCCTACCTGGGCCATTTGACACTTGCTTTCGACGAGTCGAGTTGTTTGGGATTGCAGCTCAAAGTCGGTGGTAAATTCCATCTAAAGCTAAATATGGGTGGGAGACCGATAGTGTACAAGTACCGTGAGGGAAAGATGCAAAGAACTTTGAAAAGAGAGTTAAAGAGTACCTGAAATTGCTGAAAGGGAAGCGAAGGAAACCAGTGTTGTTGCCTTGTCATATTTCTCCTCCTGCTTGCGGGTGGGGCGCTGTGGCTTGGCAGTAGTCAGCCTTGGTTGGTCTCGGTAGATACCTGTTGCTGGGAGGTAGGTCC--GGACTGATACCRGCGGCAAGTGTACTGGGAATGACCGAGTGCTGACGAAATGGTTTTCTTTACCCCGTCTTGAAACCGG
		Asteroplanus_karyanus_p132               TAAGCATATAATTAAGCGGAGGAAAAGAAACTAACCAGGATTCCCCTAGTAAGGGCGACTGAAGCGGGAAGAGCTCACAGTGTGAATCTGCACGTGCCGAATTGTGGTCTGTAGAGGCATGTGTTTGGCCGGCCGGGTTAAGTCCCTTGGAACAGGGCAGCAGAGAGGGTGAGACTCCCGTTCTTGCCTGGGCCATTTGACACTTGTTTTCGACGAGTCGAGTTGTTTGGGATTGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAAGCTAAATATGGGTGGGAGACCGATAGCGTACAAGTACCGTGAGGGAAAGATGCAAAGAACTTTGAAAAGAGAGTTAAAGAGTACCTGAAATTGCTGAAAGGGAAGCGAAGGAAACCAGTGCTTG-GCTTGTTCATATTTCTCAAATCGCTTGCGGTTTGGGCGCTGTGTACTTGCCTCTGTCATCCTTGTTTAGACTCGGCGGATACGTATGTTCGGGAGGTAGCGC----GCGTGATACCGTTCATATTATTGCTGGGTTCGAATGAG-GCTGACGAAATGGTTTTCTTTACCCCGTCTTGAAACCGG
		Asterionellopsis_japonica_p119           TAAGCATATAATTAAGCGGAGGAAAAGAAACTAACCAGGATTCCCCTAGTAAGGGCGACTGAAGCGGGAAGAGCTCACAGTGTGAATCTGCACGTGCCGAATTGTGGTCTGTAGAAGTTTGTGTTTGGCCGGCCGGGTTAAGTCCCTTGGAAAAGGGCAGCAGAGAGGGTGAGACTCCCGTTCTTGCCTGGGCCATTTGACACTTACTTTCAACGAGTCGAGTTGTTTGGGATTGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAAGCTAAATATGGGTGGGAGACCGATAGCGTACAAGTACCGTGAGGGAAAGATGCAAAGAACTTTGAAAAGAGAGTTAAAGAGTACCTGAAATTGCTGAAAGGGAAGCGAAGGAAACCAGTGCTTG-GCTTGGTCATATTTCTCGAATCGCTTGCGGTTTGGGCGCTGTGTCGTTGCCTTTGTCATTTTTGCTTGTTCTCGGCGGAAACGTGTGTTCGGGAGGTAGCGC----GCGTGATACCGTTCACATTATTGCTGGGTTTGAGTGAG-GCTGACGAAATGGTTTTCTTTACCCCGTCTTGAAACCGG
	;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions = 
 N: 1 - 576 ; 
 CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;