#NEXUS [written Sat Jun 10 23:09:16 CST 2017 by Mesquite version 3.2 (build 801) at GSW30/192.168.47.242] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=39; TAXLABELS Arabidopsis_thaliana_AtAFB2 Arabidopsis_thaliana_AtTIR1 Arabidopsis_thaliana_AtAFB3 Arabidopsis_thaliana_AtAFB4 Arabidopsis_thaliana_AtAFB5 Arabidopsis_thaliana_AtCOI1 Brassica_rapa_BrAFB2 Brassica_rapa_BrTIR1 Cicer_arietinum_CaAFB2 Cicer_arietinum_CaTIR1 Cucumis_sativus_CsAFB2 Citrus_sinensis_CsoAFB2 Citrus_sinensis_CsoCOI1 Citrus_sinensis_CsoTIR1 Cucumis_sativus_CsTIR1 Dimocarpus_longan_DlTIR1 Fragaria_vesca_FvAFB2 Fragaria_vesca_FvTIR1 Gossypium_hirsutum_GhTIR1 Glycine_max_GmAFB2 Glycine_max_GmTIR1 Musa_acuminata_MaTIR1 Malus_domestica_MdAFB2 Malus_domestica_MdTIR1 Nicotiana_tabacum_NtTIR1 Oryza_sativa_OsAFB2 Oryza_sativa_OsTIR1 Pyrus_x_bretschneideri_PbAFB2 Prunus_salicina_PsAFB2 Prunus_salicina_PsAFB5 Prunus_salicina_PsTIR1 Ricinus_communis_RcCOI1 Ricinus_communis_RcTIR1 Solanum_lycopersicum_SlCOI1 Solanum_lycopersicum_SlTIR1 Vitis_vinifera_VvAFB2 Vitis_vinifera_VvCOI1 Vitis_vinifera_VvTIR1 Zea_mays_ZmTIR1 ; END; BEGIN CHARACTERS; TITLE Auxin_receptor_Gene_family; DIMENSIONS NCHAR=632; FORMAT DATATYPE = Protein GAP = - MISSING = ?; MATRIX Arabidopsis_thaliana_AtAFB2 ------------MNYFPDEVIEHVFDFVTSHKDRNAISLVCKSWYKIERYSRQKVFIGNCYAINPERLLRRFPCLKSLTLKGKPHFADFNLVPHEWGGFVLPWIEALARS-RVGLEELRLKRMVVTDESLELLSRSFVN-FKSLVLVSCEGFTTDGLASIAANCRHLRDLDLQENEIDDHRGQWLSCFPDTCTTLVTLNFACLEG-ETNLVALERLVARSPNLKSLKLNRAVPLDALARLMACAPQIVDLGVGSYEN-----DPDSESYLKLMAVIKKCTSLRSLSGFLEAAPHCLSAFHPICHNLTSLNLSYAAEIHGSHLIKLIQHCKKLQRLWILDSIGDKGLEVVASTCKELQELRVFPSDLLG---GGNTAVTEEGLVAISAGCPKLHSILYFCQQMTNAALVTVAKNCPNFIRFRLCILEPNKPDHVTSQPLDEGFGAIVKACKSLRRLSLS---GLLTDQVFLYIGMYANQLEMLSIAFAGDTDKGMLYVLNGCKKMKKLEIRDSPFGDTALLADVSKYETMRSLWMSSCEVTLS-GCKRLAEKAPWLNVEIINENDN------------NRMEENGHEGRQKVDKLYLYRTVVGTRMDAPPFVWIL------------------ Arabidopsis_thaliana_AtTIR1 ------MQKRIALS-FPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSS-YTWLEEIRLKRMVVTDDCLELIAKSFKN-FKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLAS-EVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTA-----EVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFV-M-EPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLS---GLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFG-ACKLLGQKMPKLNVEVIDERG----------------APDSRPESCPVERVFIYRTVAGPRFDMPGFVWNMDQDSTMRFSRQIITTNGL Arabidopsis_thaliana_AtAFB3 ------------MNYFPDEVIEHVFDFVASHKDRNSISLVCKSWHKIERFSRKEVFIGNCYAINPERLIRRFPCLKSLTLKGKPHFADFNLVPHEWGGFVHPWIEALARS-RVGLEELRLKRMVVTDESLDLLSRSFAN-FKSLVLVSCEGFTTDGLASIAANCRHLRELDLQENEIDDHRGQWLNCFPDSCTTLMSLNFACLKG-ETNVAALERLVARSPNLKSLKLNRAVPLDALARLMSCAPQLVDLGVGSYEN-----EPDPESFAKLMTAIKKYTSLRSLSGFLEVAPLCLPAFYPICQNLISLNLSYAAEIQGNHLIKLIQLCKRLQRLWILDSIGDKGLAVVAATCKELQELRVFPSDVHGEE-DNNASVTEVGLVAISAGCPKLHSILYFCKQMTNAALIAVAKNCPNFIRFRLCILEPHKPDHITFQSLDEGFGAIVQACKGLRRLSVS---GLLTDQVFLYIGMYAEQLEMLSIAFAGDTDKGMLYVLNGCKKMRKLEIRDSPFGNAALLADVGRYETMRSLWMSSCEVTLG-GCKRLAQNSPRLNVEIINENEN------------NGMEQNEEDEREKVDKLYLYRTVVGTRKDAPPYVRIL------------------ Arabidopsis_thaliana_AtAFB4 -----------------ENVLENVLQFLTSRCDRNAVSLVCRSWYRVEAQTRLEVFIGNCYSLSPARLIHRFKRVRSLVLKGKPRFADFNLMPPNWGAQFSPWVAATAKA-YPWLEKVHLKRMFVTDDDLALLAESFPG-FKELTLVCCEGFGTSGIAIVANKCRQLKVLDLMESEVTDDELDWISCFPEGETHLESLSFDCVES-PINFKALEELVVRSPFLKKLRTNRFVSLEELHRLMVRAPQLTSLGTGSFSP-DN--VPQGEQQPDYAAAFRACKSIVCLSGFREFRPEYLLAISSVCANLTSLNFSYAN-ISPHMLKPIISNCHNIRVFWALDSIRDEGLQAVAATCKELRELRIFPFDPRE---DSEGPVSGVGLQAISEGCRKLESILYFCQNMTNGAVTAMSENCPQLTVFRLCIMGRHRPDHVTGKPMDDGFGAIVKNCKKLTRLAVS---GLLTDEAFSYIGEYGKLIRTLSVAFAGNSDKALRYVLEGCPKLQKLEIRDSPFGDVGLRSGMHRYSNMRFVWLSSCLISRG-GCRGVSHALPNVVVEVFGADG---------------DDDEDTVTGDYVETLYLYRSLDGPRKDAPKFVTIL------------------ Arabidopsis_thaliana_AtAFB5 -----------FPDHVLENVLENVLQFLDSRCDRNAASLVCKSWWRVEALTRSEVFIGNCYALSPARLTQRFKRVRSLVLKGKPRFADFNLMPPDWGANFAPWVSTMAQA-YPCLEKVDLKRMFVTDDDLALLADSFPG-FKELILVCCEGFGTSGISIVANKCRKLKVLDLIESEVTDDEVDWISCFPEDVTCLESLAFDCVEA-PINFKALEGLVARSPFLKKLRLNRFVSLVELHRLLLGAPQLTSLGTGSFSH-DE--EPQSEQEPDYAAAFRACKSVVCLSGFRELMPEYLPAIFPVCANLTSLNFSYAN-ISPDMFKPIILNCHKLQVFWALDSICDEGLQAVAATCKELRELRIFPFDPRE---DSEGPVSELGLQAISEGCRKLESILYFCQRMTNAAVIAMSENCPELTVFRLCIMGRHRPDHVTGKPMDEGFGAIVKNCKKLTRLAVS---GLLTDQAFRYMGEYGKLVRTLSVAFAGDSDMALRHVLEGCPRLQKLEIRDSPFGDVALRSGMHRYYNMRFVWMSACSLSKG-CCKDIARAMPNLVVEVIGSDD---------------DDD----NRDYVETLYMYRSLDGPRNDAPKFVTIL------------------ Arabidopsis_thaliana_AtCOI1 MEDPDIKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNN-LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVG-DFEILELVGFFKAAANLEEFCGGSLNEDIG---------MPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLD--REERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT-GQDLMQMARPYWNIELIPSRRVPEV----------NQQ-GEIREMEHPAHILAYYSLAGQRTDCPTTVRVLKEPI-------------- Brassica_rapa_BrAFB2 ---------------FPDEVIEHVFDFVTSHKDRNSISLVCKSWFKIERYSRQNVFIGNCYAINPERLLRRFPCFKSLTLKGKPHFADFNLVPHGWGGFVQPWIEALARS-RVGLEELRLKRMVVTDESLELLSRSFVN-FKSLVLVSCEGFSTDGLASIASNCRHLQDLDLQENEIDDHRGQWLSCFPETYTSLVTLNFACLEG-ETNLVALERLVARSPNLRSLKLNRAVPLDALARLMACAPQIVDLGVGSYED-----EQDSESCLKLQAAIRKCTSLRSLSGFLEAAPHCLSAFHPVCHNLTSLNLSYAAEIHGSHLIKLIEHCKKLQRLWILDSIGDKGLEVVASTCKELQELRVFPTDLQG---GGNTAVTEDGLVAISAGCPKLHSILYFCQQMTNAALITVAKNCPNFIRFRLCILEPHKPDHVTSQPLDEGFGAIVQACKNLKRLSVS---GLLTDQVFLYIGMYATELEMLSIAFAGDTDKGMLYVLNGCKKMRKLEIRDSPFGDAALLADVNKYETMRSLWMSSCEVTLG-GCKRLARKAPWLNVEIINENDN------------NRMEENGYEGRQKVDKLYLYRTVVGTRVDAPPFVW-------------------- Brassica_rapa_BrTIR1 ---------RVALS-FPEEVLEHVFSFIHVDKDRNSVSLVCKSWYEIERWCRRRVFIGNCYAVSPAAVIRRFPKARSVELKGKPHFADFNLVPEGWGGYVYPWIEAMSAS-YTWLEEIRVKRMVVSDECLELIAKSFKN-FKVLVLSSCDGFSTDGLAAIASSCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLVS-EVSFSALERLVCRSPNLKSLKLNRAVPLEKLAALLQRAPQLEEFGTGVYSA-----EVRPDVLSGLSVAISGCKKLKWLSGFWDALPAYLPAVYSVCSGLTTLNLSYAT-VQSYDLVKLLSQCPKLQRLWVLDYIEDDGLEMLALTCKDLRELRVFPSEPFV-M-EPNVALTEQGLVSVSAGCPKLESVLYFCRQMTNAALVTIARNRPNMTRFRLCIIEPKAPDHMTLEPLDVGFGAIVEHCKDLRRLSLS---GLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCESLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFG-ACKLLGQKMPKLNVEVIDERG----------------PPDSRPESCPVERVFIYRTVAGPRFDMPGFVWNMD----------------- Cicer_arietinum_CaAFB2 ---------------FPDEVIEHVFDYVVSHSDRNALSLVCKSWCRIERFTRQRVFIGNCYSISPERLVQRFPSLKSLTLKGKPHFADFSLVPHGWGGFVYPWIEALAKS-KVGLEELRLKRMVVSDDSLELLSRSFMD-FKSLVLVSCEGFTTDGLAAVAANCRSLRELDLQENEVEDHKGQWLSCFPESCTSLVSLNFACLKG-EINLGALERLVARSPNLKSLRLNRSVPVDALQKILMRAPQLVDLGIGSFFH-----DLNSDTYAKLKATILKCKSITSLSGFLEVAPFSLAAIYPISQNLTSLNLSYAAGIQSSELIKLIRHCGKLQRLWIMDCIGDKGLGVVASSCKDLEELRVFPSAPFG---N-HAAVTEKGLVAISMGCPKLHSLLYFCHQMTNAALITVAKNCPNFIRFRLCILDATKPDPDTMQPLDEGFGAIVQSCKRLRRLSLS---GKLTDQVFLYIGMYADQLEMLSIAFAGESDKGMLYVLNGCKKLRKLEMRDCPFGDSALLTDIGKYETMRSLWMSSCEVTVG-ACKTLAKKMPRLNVEIFNESE---------------QEDCDMEDEQRVEKMYLYRTVAGKRNDAPEYVWTL------------------ Cicer_arietinum_CaTIR1 ------MK-RVAYS-FPEEVLEHVFSFIESDTDRGSISLVCKSWYEIERWCRRRVFVGNCYAVSPLMVIKRFPKVRSITLKGKPHFADFNLVPEGWGGYVCPWIKAMAVA-YPCLQEIRLKRMVITDDCLDLIAKSFKN-FTVLVLTSCEGFTTDGLAAIAANCRNLRELDLRESEVDDICGHWLSHFPDSYTSLVSLNISCLAS-EVNLHGLERLVSRCPNLQTLRLSRAFPLDRLANLLRGAPQLVELGTGAYTT-----EMQPEVFSNLVTAFSGCKQLKGLSGFWDVLPSYLPAVYPVCSRLTSLNLSYAT-IQSTDLIKLVGQCESLQRLWVLDYIEDAGLDMLAASCKDLRELRVFPSDPFG-L-DPNVALTEQGLVSVSEGCPKLHSVLYFCRQMSNAALNTIARNRPNMTRFRLCIIEPRTPDYLTLQPLDAGFGAIVEHCKNLQRLSLS---GLLTDRVFEYIGTYGKKLEMLSVAFAGDSDLGLHHVLSGCDNLRKLEIRDCPFGDKALLANAAKLETMRSLWMSSCYVSYG-ACKLLGQKLPRLNVEVIDERG----------------PPDSRPESSPVEKLYIYRTISGPRSDMPGYVWTMEDDS-------------- Cucumis_sativus_CsAFB2 ------------MNYFPDEVLEHVFDYVTSHRDRNAVSLVCKLWYRVDRFSRQKVFVGNCYSITPERVIGRFPCVKSLTLKGKPHFADFNLVPHDWGGYVYPWIQAFAKR-RISLEELRLKRMVVTDDSLELLSRSFPN-FKSLLLFSCEGFTTNGLAAIAANCRFLRELDLQENEIDDHSNYWLSCFPESCTSLVSLNFACLRG-EVNLGALERLVARSPNLKSLRLNRAVPIETLQNILAHAPQLVDLGTGSYDH-----DRDSEIYENIKNTLLKCKSIRSLSGFLDVSPCCLASIYPICSNLTSLNLSYAPGLHGNELIKVIQYCERLQRLWILDGIGDKGLEVVASTCNELQELRVFPSDLSG---AGNVAVTEEGLVAISKGCPKLHSILYFCHQMTNAALVTVAKNNPNFIRFRLCILDPTKPDPVMGNALDEGFGAIVKACKGLRRLSLS---GLLSDQVFYYIGEYAKHLEMLSLAFAGISDKGMIHVLNGCKKLRKLEIMDSPFGDMALLQDVGKYETMRSLWMSSCEITLG-GCKTLAKKMPRLNVEIINENDQLGFCRNVEMINENGQSEVCRDDKQKVGKMYLYRTLVGPRKDAPKFVWTL------------------ Citrus_sinensis_CsoAFB2 -----------MMNYFPDEVIEHVFDFVTSQKDRNAVSLVCKSWYKIERLSRQSVFIGNCYAISPERVIGRFRGLKSLTLKGKPHFADFNLLPYDWGGWVYPWVEALAKS-RVGLEELRLKRMVVSDDCLELLSRSFVN-FKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDSCTSLVSLNFSCLKG-EINLTALERLVARSPNLKSLRLNRAVPLDTLQKLLMRAPQLVDLGIGSFVY-----DPSSEAYIKLKATLVKCKSIRSLSGFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQELRVFPS---G---VDNAAVTEEGLVAISAGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLS---GLLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTLG-GCQTLAKKMPRLNVEIINEDD---------------QMEFSLDDRQKVGKMYLYRTLVGPRKDAPDFVWTL------------------ Citrus_sinensis_CsoCOI1 MEEDKKVNKMNSGMPDIDTVFECVIPYVEDPKDRDAISLVCRRWYELDATTRRHITIALCYTTTPARLRRRFRNLESLKLKGKPRAAMFNLIPEDWGGYVTPWVEEIAAS-FNSLKSIHFRRMIVRDSDLEVLAKNRGKNLLVLKLDKCCGFSTDGLLHVSRSCRQLRTLFLEESSIFEKDGDWLHELALYNTVLETLNFYMTDLIKVNVEDLELIARNCRSLSSVKTN-DCELLDLVNFFQIATALEEFCGGSFNHPP------------EKYSAVAFPRSICRLGLSYMEQDHMWIIFPFAAMLKKLDLLYAL-LNTEDHCLLIQRCPNLEILETRNVIGDRGLEVLARSCKKLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCLELEYIAIYVSDITNESLECIGANLRNLCDFRLVLLD--REEKIADLPLDNGVRALLMGCDKLRRFGLYLRQGGLTDTGLGYVGQYSLNVRWMLLGCVGETDEGLIAFSRGCPNLRKLEMRGCSFSEYALAAAVMQLTSLRYLWVQGYRASKD-GRDILRMVRPFWNIELIPPRLVSDT----------DQL-GNPIVIEHPAHILAYYSLAGQRTDFPETVRPLDTESLLSVQSCT------ Citrus_sinensis_CsoTIR1 ------MLKKMSYSSLPEDVLEHVFSFVQSDKDRNVISLVCKSWYEIERWCRRRIFVGNCYAVSPRMAIRRFPEVRSVELKGKPHFADFNLVPEGWGGYVYPWIRAMAGG-YPWLEELKLKRMVVTDESLELIAKSFKN-FKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWESDVEDPSGNWLSKFPDTCTSLVSLNIACLGS-EVSFSALERLVVRCPNLRTLRLNRAVPLEKLAHLLRQAPQLVELGTGTYSA-----DLRPDIFSNLAGAFSGCKELKSLSGFWDVVPAYLPAVYSVCSGLTTLNLSYAT-IQSPDLIKLVSQCPKLQCLWVLDYIEDSGLEALAATCKDLRELRVFPSEPFG-D-EPNVSLTEQGLVLVSEGCPKLESVLYFCRRMSNDALVTIAKNRPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLS---GLLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSVSFE-ACKLLGQKMPRLNVEVIDESG----------------PPDSRPE-LPVKKLYIYRTVTGRRIDMPGFVWNVGEDSALRLS--------- Cucumis_sativus_CsTIR1 -------MLRMAST-FPEDVLEHVFSFIQCHQDRNSISMVCKSWYEIERWCRKRVFVGNCYAVSPQIVIRRFPDVRSVELKGKPHFADFSLVPDGWGGYVYPWILAMASA-YPLLEEIRLKRMVVTDESLELISKSFKN-FKVLVLMTCEGFSTDGLAAIAANCRHLKVLDLRESDVEDLNGHWLSHFPDTYTSLVSLNIACLVS-EVSVSALERLVDRCPNLRTLRLNRPVPLDRHANLLRRAPQLVEFGAGCYTA-----DLRSEVFSSLTGAFTSCTELKSLSGFWDVVPAYLPSVYPTCSQLTSLNLSYAT-IQCDDLTKLVSQCHNLQKLWVLDFIEDSGLEAVAVTCKDLRELRVFPSEPYG-L-EPNVSLTEQGLVSVSEGCPKLQSVLYFCRQMTNAALVTIARNRPNMTRFRLCILEPWTPDYVTGQALDVGFGAIVEYCKDLQRFSLS---GLLTDRCFEYIGTYGKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIRDCPFGDKALLANAAKLETMRSLWMSSCSVSFG-ACKLLAQKFPQLNVEVIDERD----------------PPNTRPESCPVERLYIYRSVAGRRLDMPGFVWTMDGDAPLRLT--------- Dimocarpus_longan_DlTIR1 ------MLKRMSYSSFPEDVLEHVFSFVQSDKDRNAISLVCKSWYEIERWCRRRIFVGNCYAVSPRMVIRRFPEVRSVEMKGKPHFADFNLVPDGWGGYVYPWIAVTASG-YPWLEEIRLKRMVVTDETLELIAKSFKS-FKVLVLSSCEGFSTHGLGAIASNCRNLRELDLRESEVDEVSGNWLNDFPDTCTSLVSLNISCLVS-EVNFSALERLVGRSPNLRTLRLNRAVPLDKLANLLCRAPQLVELGTGAYSA-----DLRPEVFSNLVGAFSGCKQLKGLSGFWDVASAYLPAIYPVCSGLTSLNLSYAS-VQSPDLIKLVSQCPNLQRLWVLDYIEDSGLEALAASCKDLQELRVFPSEPYG-V-EPNVSLTEQGLVCVSEGCPKLESVLYFCRRMSNDALITIARNRPNMTRFRLCIIDPQTPDYLTRQALDVGFGAIVEHCRGLRRLSLS---GLLTDRVFEYIGTYAKKLEMLSLAFAGDSDLGLHHVLSGCESLRKLEIRDCPFGDKALLANAAKLETMRSLWMSSCSVSFG-ACKLLGQKMPRLNVEVIDERG----------------PPDSRPESFPVEKLYIYRTVAGPRFDMPGFVWNMDEDSALRFS--------- Fragaria_vesca_FvAFB2 ------------MNYFPDEVIEHIFDFVTKQRDRNAVSLVCKSWYKIERFSRERVVIGNCYAISPERVIARFPGLKSLTLKGKPHFADFNLVPHDWGGSVDPWIDALAES-RVGLEELRLKRMVVSDESLDLLSRSFLN-FKSLVLVSCEGFTTDGLAAIAAHCRFLRELDLQENDIDDHRGHWLSCFPDSCTSLVSLNFACLKG-EINLAALVRLVARSPNLKVLRVNRAVPLDTLQKVLMRAPQLVDLGTGSYVL-----EPDSESYRKLKATILKCKSIQSLSGFLEGAPHSLPAFYPICLTLTSLNLSYAPGVHGTDLIKLIRQCGRLKRLWTLDCIGDKGLGVVASTCKELQELRVFPSDPFG---VGHAAVTEEGLVAISAGCPKLHSLLYFCQQMTNAALITVAKNCPNFIRFRLALLDPMKPDPVTMQPLDEGFGAIVQACKKLRRLSLS---GLLTDQVFLYIGMYAEQLEMLSIAFAGDSDKGMLYVLNGCKKLRKLEIRDSPFGDGALLKDVGKYETMRSLWMSSCEVTLG-GCKTLAMNMPGLNVEIINENN---------------QMEYADNDEQKVEKMYVYRTLAGPREDKPEYVWTL------------------ Fragaria_vesca_FvTIR1 -------MLRMASS-FPEEVLEHVFSFLQSDGDRNSISLVCKSWYEIERWCRRRIFVGNCYAVSPRIMIRRFPDVRSITLKGKPHFADFNLVPEGWGGYVYPWIAAMASA-YPWLEEIRLKRMVVTDESLELIAKSFKN-FKLLVLSSCEGFSTDGLASIAANCRNLRELDLHDSDVEDLSGHWLSHFPDTYTSLVSLNIACLGS-EVSFSALERLVGRCPNLRSLRLNRAVPLDKLSNLLNRAPQLDELGTGASSA-----ELRPDVLSNLSGALSACKELKSLSWFWDVVPTYLSAVYSICPGLTSLNLSYAI-IQSPDLIKLVSQCPNLQRLWVLDYIEDVGLDALAASCKDLRELRVFPSDPYV-L-EANVSLTEQGLISVSEGCPKLQSVLYFCRQMSNDALITIARNQPNFTCFRLCIIEPRTPDYLTREPLDVGFGAIVERCKDLRRLSVS---GLLTDRAFEYIGTYGKKLEMLSVAFAGESDLGLHHVLSGCDNLRKLEIRDCPFGDKALLANAAKLETMRSLWMSSCSVSYG-ACKLLGQKLPRLNVEVIDERG----------------HPELRPESCPVEKLYIYRSVAGPRFDMPGFIWTMDEHSAVRLT--------- Gossypium_hirsutum_GhTIR1 ------MHKKMAFS-FPDEVLEHVFSFIQSDKDRNAVSMVCKSWYEIERWCRRKVFVGNCYAVSPRMVIRRFPEFRSIELKGKPHFADFNLVPDGWGGYVFPWIAEMAGA-YPWLEEIRLKRMVVTDESLELIAKSFKN-FKVLVLSSCEGFSTDGLAAIAASCKNLKELDLRDCEVDDLSAHWLSHFPETYTSLVSLNISCLGSDEASFSALERLVHRCTNLKTLRLNRAVPLDKIANILRHAPQLVEFGTGTYTA-----DVRPDVYSDLAGVLSSCKELKSLSGFWDVIPDYLPAIYPVCSKLTSLNLSYAT-IQSPDLIKLVSHCPNLQRLLVLDYIEDSGLEVLASSCKDLQELRVFPSDPFG-A-EPNVSLTEQGLVAVSLGCPKLQSVLYFCRRMSNEALVTIARSRPNFTRFRLCIIEPKTADYLTLEPLDVGFGAIVQYCKDLRRLSLS---GLLTDRVFEYIGTYAKKLEMLSVAFAGDSDLGLHHVLSGCESLRKLEIRDCPFGDKALLANAAKLETMRSLWMSSCAVSFA-ACKLLGQKMPRLNVEVIDERG----------------PPDSRPENCPVDKLYIYRSIAGPRFDMPPFVWTMDEDSGLRLS--------- Glycine_max_GmAFB2 -----------MMNYFPDEVIEHIFDYVVSHSDRNALSLVCKSWYRIERCTRQRVFIGNCYSITPERLIQRFPGLKSLTLKGKPHFADFSLVPYDWGGFVHPWVEALAKS-RVGLEELRLKRMVVSDESLELLSRSFTH-FKSLVLVSCEGFSTDGLAAIAANCRFLRELDLQENEVEDHKGQWLSCFPDNCTSLVSLNFACLKG-EVSLGALERFVARSPNLKSLKLNRSVPVDALQRIMMRAPQLSDLGIGSLVH-----DPESEAYIKLKNTILKCKSITSLSGFLEVAPHCLAAIYPICPNLTSLNLSYAAGIQGSALVKLIHHCVKLQRLWIMDCIGDKGLGVVATTCKDLQELRVFPSVPFG---D-PAAVTEKGLVAISMGCPKLHSLLYFCHQMTNAALITVAKNCPNFIRFRLCILDATKPDPDTMQPLDEGFGAIVQSCRRLRRLSLS---GKLTDQVFLYIGMYAEKLEMLSIAFAGDGDKGMLYVLNGCKKLRKLEIRDCPFGDMALLTDVGKYETMRSLWMSSCEVTVG-ACKLLAKKMPRLNVEIFNENE---------------QEDCSLEDGQKVEKMYLYRTLAGKRKDAPEYVWTL------------------ Glycine_max_GmTIR1 ------MRPRVAYS-FPEEVLEHVFSFIECDKDRGSISLVCKSWYEIERWCRRRVFVGNCYAVSPATVVNRFPKVRSIAIKGKPHFADFNLVPEGWGAYVGPWIKAMAAA-YPWLQEIRLKRMVIADECLELIAKSFKN-FQVLVLTSCEGFTTDGLAAIAANCRNLRELELRESEVDDICGHWLSHFPDSYTSLVSLNISCLGN-EVNLSALERLVSRCPNLQTLRLNRAVPLDRLATLLRGAPQLVELGTGAYTT-----EMRPEVFTNLAEAFSGCKQLKGLSGFWDVLPSYLPAVYPICSNLTSLNLSYAT-IQSPDLIKLVGQCESLQRLWVLDYIEDAGLEVIAASCKDLRELRVFPSDPFG-L-EPNVALTEQGLVSVSEGCTKLQSVLYFCRQMSNAALDTIARSRPNMTRFRLCIIEPRAPDYLTHQPLDAGFGAIVEHCKDLQRLSLS---GLLTDRVFEYIGTYGKKLEMLSVAFAGDSDLGLHHVLSGCDNLRKLEIRDCPFGDKALLANAAKLETMRSLWMSSCLVSYG-ACKLLGQKMPRLNVEVIDERG----------------PPDSRPESSPVEKLYIYRTVSGPRLDMPGYVWRMQDDSALRIS--------- Musa_acuminata_MaTIR1 --------FRWAAM-FPDEVWEHVFSFLPADADRNAAALVCRAWYRIERRSRWRVFVGNCYAVEPAAAVRRFPEVRAAAIKGKPHFADFNLVPSDWGGGAEAWVEAMVEG-WPHLEELRLKRMVVSDDCLELIARCFKN-FKVLSLVSCEGFSTAGLAAIAANCRNLRELDLHENEVEDNCLHWMSHFPESFASLVTLNIACLEG-EVNVSVLERLIGRCPNLKTLRLNHSVPLERLVGLLHRVPQLVDLGTGKFAA-----QHHPELFSKLESAIAGCKNLKSLSGFWEAGPTYLPAIYSVCEGLTSLNLSYAT-IQGPELIKLISWCKNLQRLWVMDLIEDDGLIAVAASCKLLQELRVFPSDPYG-A-AQPISLTEHGLVAISAGCPMLHSVLYFCRQMTNAALLTVAKNCPNFTCFRLCIMEPHTPDYITRQPLDAGFSAIVESCKHLRRLSLS---GLLTDLVFKSIGASANCLEMLSVAFAGDGDAGLHYILSGCKNLRKLEIRDCPFGDKPLLDNAAKLETMRSLWMSSCSVTLG-ACRQLARKMPLLNVEVINERKR-------------GLPLELQPDNCPVEKLYIYRTVAGPRSDTPSCVWIL------------------ Malus_domestica_MdAFB2 ------------MNYFPDEVVEHIFESVTSQKDRNAVSLVCKSWFRIERFSRERVFIGNCYAISPERVIERFPGLKSLTLKGKPHFADFNLVPHEWGGFLQPWIEALADG-RVGLEELRLKRMVVSDESLELLSRLFPN-FKSLVLVSCEGFTTEGLAAIAANCRFLKELDLQENDIDDHRGHWLSCFPESSTSLVSLNFACLKG-EINLAALERLVARSPDLKVLRLNRAVPPDTLQKVLTQAPQLVDLGTGSYVL-----DSDSDTYNKLKATILKCKSIKSLSGFLEVGPRCLPSIYPILENLTSLNLSYASGVHGSELIELIRQCVKLQRLWILDCIGDKGLGVVAKSCKELQELRVFPSDPFA---AGHASVTEEGLVAISAGCPKLHSLLYFCQQMTNAALITVAKNCPNFIRFRLCILDPTKPDAVTMQPLDEGFGAIVQACKKIRRLSLS---GLLTDQVFLYIGMYAEQLEMLSIAFAGDSDKGMLYVLNGCKKLRKLEIRDSPFGNKALLRDVGKYEAMRSLWMSSCEVTLG-GCKALAKKMPRLNVEIINEND---------------QMDL--DDEQRVEKMYLYRTLVGKRRDTPEFVWTL------------------ Malus_domestica_MdTIR1 ----MREMQRMVNS-FPEEVLEYVFSFIQTDQDRNSISTVCKSWYEIERWCRRRIFIGNCYAVSPRMLIRRFPDVRSIELKGKPHFADFNLVPEGWGGYVYPWIAAMASA-YPWLEEIKLKRMVVTDETLELIAKSFKN-MKLLVLSSCEGFSTDGLASIAANCRNLRELDLHESDVEDLSGHWLSHFPDTYTSLVSLNIACLGS-ELSFSALERLVARCPNLRSLRLNRSVPLDRLANLLRLAPRLTELGTGAYSA-----ELRPDVFAILSRAISGCKELKSLSGFWDVVPTYLPAIYSICPGLTSLNLSYST-IQSPDLVKLVSQCPNLQRLWVLDYIEDVGLDALAESCKDLRELRVFPSDPFV-V-EPNVSLTEQGLISVSEGCPKLHSVLYFCRQMSNDALITIARNQPNFTCFRLCIIEPKIPDYLTLQPLDVGFGAIVENCKNLRRLSVS---GLLTDQAFDYIGTYGKKLEMLSLAFAGDSDLGLHHILSGCDNLRKLEIRDCPFGDKALLANAAKLETMRSLWMSSCSVSYG-ACKLLGQRLPRLNVEVIDERG----------------HPESRPESSPVEKLYIYRSVAGPRFDMPGFVWTMDEDSALRVT--------- Nicotiana_tabacum_NtTIR1 ----------MAYS-FPEEVLEHVFSFLSSDQDRNSVSLVCKSWYEIERWCRRRIFVGNCYAVSPSLMIRRFPEVRSVELKGKPHFADFNLVPEGWGAYVHPWIVAMSRS-YPWLEEIRLKRMVITDESLELISKSFKN-FKVLVLSSCDGFTTDGLASIAANCRNIRELDLGESEVEDLSGHWLSHFPDSCTSLVSLNIACLAS-EISFLALERLVARSPNLRTLRINRAVPLEKLPNLLRHASQLIEFGTGAYSA-----DVRSDVFSNLTEAFSGCKQLKGLSGFWDVVPAYLPAIYPVCSRLTSLNLSYAT-SQNPDLGKLISQCHNLQRLWVLDYIEDIGLEELAANCKDLQELRVFPSDPFA-P-EPNATLTEQGLVAVSDGCPKLQSVLYFCRQMTNAALVTIARNRPNMIRFRLCIIEPRSSDYLTLGPLDTGFGAIVENCKELRRLSLS---GLLTDRVFEYIGTHAKKLEMLSIAFAGDSDLGLHHVLSGCESLRKLEIRDCPFGDKALLANAAKLETMRSLWMSSCSVSFG-ACKLLAQKIPRLNVEAIDERG----------------LPDTRPESCPVEKLYIYRSVAGPRFDKPGFVWTMDEEAAVRLS--------- Oryza_sativa_OsAFB2 ---------------FPEEVVEHIFSFLPAQRDRNTVSLVCKVWYEIERLSRRGVFVGNCYAVRAGRVAARFPNVRALTVKGKPHFADFNLVPPDWGGYAGPWIEAAARG-CHGLEELRMKRMVVSDESLELLARSFPR-FRALVLISCEGFSTDGLAAVASHCKLLRELDLQENEVEDRGPRWLSCFPDSCTSLVSLNFACIKG-EVNAGSLERLVSRSPNLRSLRLNRSVSVDTLAKILLRTPNLEDLGTGNLTD-----DFQTESYFKLTSALEKCKMLRSLSGFWDASPVCLSFIYPLCAQLTGLNLSYAPTLDASDLTKMISRCVKLQRLWVLDCISDKGLQVVASSCKDLQELRVFPSDFYV---AGYSAVTEEGLVAVSLGCPKLNSLLYFCHQMTNAALVTVAKNCPNFTRFRLCILEPGKPDVVTSQPLDEGFGAIVRECKGLQRLSIS---GLLTDKVFMYIGKYAKQLEMLSIAFAGDSDKGMMHVMNGCKNLRKLEIRDSPFGDAALLGNFARYETMRSLWMSSCNVTLK-GCQVLASKMPMLNVEVINERDG------------SNEMEENHGDLPKVEKLYVYRTTAGARDDAPNFV--------------------- Oryza_sativa_OsTIR1 -------------S-LPDEVWEHAFSFLPAAADRGAAAGACSSWLRAERRSRRRLAVANCYAAAPRDAVERFPSVRAAEVKGKPHFADFGLVPPAWGAAAAPWIAAAADG-WPLLEELSFKRMVVTDECLEMIAASFRN-FQVLRLVSCDGFSTAGLAAIAAGCRHLRELDLQENEIEDCSIHWLSLFPESFTSLVTLNFSCLEG-EVNITVLERLVTRCHNLKTLKLNNAIPLDKLASLLHKAPQLVELGTGKFSA-----DYHSDLFAKLEAAFGGCKSLRRLSGAWDAVPDYLPAFYCVCEGLTSLNLSYAT-VRGPELIKFISRCRNLQQLWVMDLIEDHGLAVVASSCNKLQELRVFPSDPFG-A-G---FLTERGLVDVSASCPMLESVLYFCRRMTNEALITIAKNRPNFTCFRLCILEPHTPDYITREPLDAGFSAIVESCRGLRRLSIS---GLLTDLVFKSIGAHADRLEMLSIAFAGNSDLGLHYILSGCKSLKKLEIRDCPFGDKPLLANAAKLETMRSLWMSSCLLTLG-ACRQLARKMPRLSVEIMNDPGR-------------SCPLDSLPDETPVEKLYVYRTIAGPRSDTPACV--------------------- Pyrus_x_bretschneideri_PbAFB2 ---------------FPDEVIEQIFESVTSQKDRNAVSLVCKSWYKIERFSRERVFIGNCYAISPERVIERFPGFKSLTLKGKPHFADFNLVPDEWGGFLQPWIEALADG-RVGLEELRLKRMIVSDESLELLSRSFPN-FKSLVLVSCEGFTTDGLAAIAANCRLLKELDLQENDIDDHRGHWLSCFPESSTSLVSLNFACLKG-EINLPALERLVGRSPNLKVLRLNRAVPPDTLQKVLAQAPQLVDLGTGSYIL-----DPDSDTYNKLQATVVKCKSIKSLSGFLEVGPRCLPSIYPILENLTSLNLSYAPGVHGSELIELIRQCVKLQRLWILDSIGDKGLGVVASTCKELQELRVFPSDPFA---AGHAFVTEEGLVAISAGCPKLHSLLYFCQQMTNAALITVAKNCPNFIRFRLCILDPTKPDAVTMRPLDEGFGAIVQACKNIRRLSLS---GLLTDRVFLYIGMYAEQLEMLSIAFAGDSDNGMLYVLNGCKKLRKLEIRDSPFGNEALLKDVGKYETMRSLWMSSCEVTLG-GCKALAKRMPTLNVEIINESD---------------QVEIGGDDEQRVEKMYLYRTLVGKRRDTPEFVWTL------------------ Prunus_salicina_PsAFB2 ---------------FPDEVIGHIFDSVTSHKDRNAVSLVCKSWYRIERFSRERVFIGNCYAISPERVIERFPGLKSLTLKGKPHFADFNLVPHDWGGFLQPWVEAFVDS-RVGLEELKLKRMVVSDESLELLSRSFLN-FKSLVLVSCEGFTTDGLAAIAANCRFLKELDLQENDIDDHRGQWLSCFPENCTSLVSLNFACLKG-EINLAALERLVARSPNLKVLRLNRAVPSDTLQKVLMRAPQLVDLGTGSYVL-----DPDSETYNKLKATILKCKSIKSLSGFLEVAPRCLPAIYPICSNLTSLNLSYAPGVHGSELIKLIRHCGKLQRLWILDCIGDKGLGVIASTCKELQELRVFPSDPFG---VGHAAVTEEGLVAISAGCPKLHSLLYFCQQMTNAALITVAKNCPNFIRFRLCILDPTRPDAVTMQPLDEGFGAIVQACKNIRRLSLS---GLLTDKVFLYIGMYAEQLEMLSIAFAGDSDKGMLYVLNGCKKLRKLEIRDCPFGNMALLKDVGKYETMRSLWMSSCEVTLG-GCKALAEKMPRLNVEIINEND---------------QMELGLDDEQRVEKMYLYRTLVGPRNDKPEFVWTL------------------ Prunus_salicina_PsAFB5 -----------------ENVLENVLCFLTSRSDRNAASLVCKSWYRAEALTRSELFIGNCYAVSPRRATARFTRVRAVTIKGKPRFADFNLMPAHWGAHLAPWVSSMAKA-YPWLEKLFLKRMSVTDDDLALLAESFPG-FKELVLVCCDGFGTSGLAVVASKCRQLRVLDLTESDVMDDDVDWIRCFPESQTCLESLMFECVEC-LINFEALEKLVARSPSLKKLSLNRFVSIGQLYRLMVRAPQLTHLGTGSFNTSEV--MAQGDQELDYRSAFAACKSLVYLSGFREIFLDYLPAISPVCGNLTTLNFSYAN-INAEQLKSVICHCHKLQTFWVLDSICDEGLKAVARTCKDLRELRVFPVNAQE---DIEGPVSEVGLQAISEGCRKLRSILYFCQRMTNAAVIAMSKNCPDLVVFRLCIMGRHRPDHVTGESMDEGFGAIVMNCKKLTRLAVS---GLLTDGAFSYIGKYGKLVRTLSVAFAGDSDTGLKHVLEGCSNLQKLEIRDSPFGDTALRSGLHHYYNMRFLWMSSCTLTRQ-GCHEIARELPGLVVEVMKNEQ---------------EED--TGEPENVDILYVYRSLEGARDDISKFV--------------------- Prunus_salicina_PsTIR1 -------MLKMANS-FPEEVLEHVFSFIQSDSDRNSISMVCKSWYEIERWCRRRIFIGNCYAVSPRMMIRRFPDIRSIELKGKPHFADFNLVPEGWGGYVHPWIAAMADA-YPWLEEIKLKRMVVTDETLELIAKSFKN-FKLLVLSSCEGFSTDGLAAIAANCRNLRELDLHESDVEDLSGHWLSHFPDTYTSLVSLNIACLGS-EFSFSSLERLVGRCPNLKSLRLNRTVPLDRLANLLHRAPQLVELGTGACSA-----ELRPDLFSNLAGSLSGCKELKTLSGFWDVVPAYLPAIYSICSGLTSLNLSYAI-IPSPDLIKLVSQCPNLQRLWVLDYIEDVGLDALAVSCKDLRELRVFPSDPFV-V-EPNVSLTEQGLISVSEGCPKLQSVLYFCRQMSNDALITIARNQPNFTCFRLCIIEPRTPDYITLEPLDVGFGAIVEHCKDLRRLSVS---GLLTDRAFEYIGTHGKKLEMLSLAFAGDSDLGLHYVLSGCENLRKLEIRDCPFGDKALLANAAKLETMRSLWMSSCSVSYG-ACKLLGQKLPRLNVEVIDERG----------------HPESRPESCPVEKLYIYRSVAGPRFDMPGFVWTMDEDSAVRVT--------- Ricinus_communis_RcCOI1 ------------------DVLDYVMPYIQGPKDRDAVSLVCRRWYELDALTRKHITIALCYTTSPDRLRRRFKHLESLKLKGKPRAAMFNLIPEDWGGYVTPWIDEIAAASFTCLKSLHFKRMIVKDSDLALLAKSRGKVLHVLKLDKCSGFSTDGLLHVACFCRQLRTLFLEESAIFEKDGDWLHEIAMNNTVLEILNFYMTDLNAVRFEDLEIIAKNCRCLVSVKIS-DCEILDLAGFFHAAAALEEFCGGSFNYSAN--------DLQDKYSAVTFPRKLCRLGLTYLGKNEMPIVFPFASLLKKLDLLYAL-LDTEDHCLLIQKFCNLEVLETRNVIGDRGLEVLASSCKRLKRLRIERGADEQGMEDEEGIVSHRGLIALAQGCLELEYLAVYVSDITNAALEHIGAHLKNLNDFRLVLLD--KEERITDLPLDNGVRSLLRQCEKLRRFALYLRPGGLTDVGLGYIGEYSPNVRWMLLGYVGESDEGLLAFSKGCPSLQKLEMRGCCFTERALARAVMQLTSLRYLWVQGYRASSVPGRELLAMARPFWNIELIPPRRVVVV----------NQV-NEDVLVEQPAHILAYYSLAGARTDFPDSV--------------------- Ricinus_communis_RcTIR1 ------MLRMMASS-FPEEVLEHVLLFIQSDKDRNAVSMVCKSWYEIERWCRRRIFVGNCYAVSPTMVIRRFPDVRSIELKGKPHFADFNLVPEGWGGYVFPWIVAMSSA-YPWLEEIRLKRMVVSDEALELISKSFKN-FKVLVLSSCEGFSTGGLAAIAANCRNLRELDLRESEVDDPSGHWLSHFPDSFTSLVSLNISCLGS-EVSFSALKRLVGRCPNLRTLRLNRAVPLDRLANILRRAPQLVELGTGAYSA-----ELRPDVFSTLSGAFSGCKELKSLSGFWDVVPGYLPAIYPICSGLTSLNLSYAT-IQSPDLVKLVSQCQSLQRLWVLDYIEDVGLEALATFCKDLRELRVFPSDPFG-P-EPNVSLTEQGLVVVSEGCPKLQSVLYFCRQMTNDALITIARNRPNMTRFRLCIIEPRMPDNVTHQPLDDGFGAIVQYCKDLRRLSLS---GLLTDRVFEYIGTHAKKLEMLSVAFAGDSDLGLHHVLSGCENLRKLEIRDCPFGDKALLANAAKLETMRSLWMSSCSVSYG-ACKLLGQKMPRLNVEVIDERG----------------PPDTRPESCPVEKLYIYRSVAGPRFDMPGFVYTMDEDSALRFS--------- Solanum_lycopersicum_SlCOI1 ---MEERNSTRLSSSTNDTVWECVIPYIQESRDRDAVSLVCKRWWQIDAITRKHITMALCYTAKPEQLSRRFPHLESVKLKGKPRAAMFNLIPEDWGGYVTPWVMEITKS-FSKLKALHFRRMIVRDSDLELLANRRGRVLQVLKLDKCSGFSTDGLLHISRSCKNLRTLLMEESYIIEKDGEWAHELALNNTVLENLNFYMTDLLQVRAEDLELIARNCKSLVSMKIS-ECEITNLLGFFRAAAALEEFGGGAFNDQPELVVENGYNEHSGKYAALVFPPRLCQLGLTYLGRNEMSILFPIASRLRKLDLLYAL-LDTAAHCFLLQRCPNLEILETRNVVGDRGLEVLGQYCKRLKRLRIERGADDQEMEDEEGAVTHRGLIDLAKGCLELEYMAVYVSDITNEALEVIGTYLKNLSDFRLVLLD--REERITDLPLDNGVRALLRGCHNLRRFALYVRPGGLTDVGLSYVGQYSPNVRWMLLGYVGESDHGLLEFSKGCPSLQKLEVRGCCFSERALALATLQLKSLRYLWVQGYRASSA-GRDLLAMARPFWNIELIPARRVIAN----------DGNNAETVVSEHPAHILAYYSLAGQRTDFPDTVKPLDPTYLLAE---------- Solanum_lycopersicum_SlTIR1 ----------MAYS-FPEEVLEHVFSFLTTDKDRNAVSVVCKSWYEIERWCRRRIFVGNCYAVSPRIMIRRFPEVRSVELKGKPHFADFNLVPEGWGAYVYPWILAMSRS-YPWLEEIKLKRMVITDESLELISKSFKN-FKVLVLSSCDGFTTDGLAAIAANCRNLRKLDLGESEVEDLSGHWLSHFPDNCTSLVSLNIACLAS-EVSLLALERLVTRSPNLTTLKINRAVPLERLPNLLRRTSQLVKFGTGVFSA-----DVRSDFFSNLTEAFSSCKQLKCLSGFWDVVPAYLPALYPVCSRLTSLNLSYAT-CQNPDLGKLISQCHNLRRLWVLDYIEDTGLEELAANCKDLQELRVFPSDPFA-A-EPNTTLTEQGLVAVSDGCPKLQSVLYFCRQMTNAALVTIARNRPNMIRFRLCIIEPRTPDYLTLGSFDAGFGAIVENCKELRRLSLS---GLLTDRVFEYIGAHAKKLEMLSIAFAGDSDLGLHHVLSGCDSLRKLEIRDCPFGDKALLANAAKLETMRSLWMSSCSVSFE-ACKMLAQKMPRLNVEVIDERG----------------PPDTRPESCPVEKLYIYRTVAGRRFDTPGYVWTMDEDAAVSLT--------- Vitis_vinifera_VvAFB2 ---------------FPDEVLEHVFDFLTSHRDRNTVSLVCKSWFKVEKWSRRRVFVGNCYAISPERLIARFPRVRALTLKGKPHFADFNLVPPDWGGFVYPWIEAMAKS-NIGLEELRLKRMVVSNEGLELLARSFVN-FKSLVLVSCEGFTTDGLAAVAANCRFLRELDLQENEVEDRKGQWLSCFPDSCTSLVSLNFACLKG-EVNLTALERLVARCPNLKSLRLNRAVPLDALQRILMHAPQLVDLGTGSYVH-----DPDAETVNKLISTFQKCKSIRSMSGFLEVAPLCLPAIYPICSNLTSLNLSYAPGIHGDELIKLIRYCRKLQRLWILDCIGDKGLGVVACTCKELQELRVFPSDPFG---VGNAAVTEEGLVAISFGCPKLHSLLYFCQQMTNAALITIAKNCPNFTRFRLCILDATKADPVTMQPLDEGFGAIVQSCKGLRRLSLS---GLLTDQVFLYIGMYAEQLEMLSIAFAGDSDKGMLYVLNGCKKLRKLEIRDCPFGNVALLTDVGKYETMRSLWMSSCEVTLG-GCKVLAEKMPRINVEIINEYD---------------QMEFGFDDRQKVDKMFLYRTLVGPRKDAPHFVWTL------------------ Vitis_vinifera_VvCOI1 -----MLDMADRGMS--DEVLNCVMPYIHDPKDRDAVSLVCRRWYELDALTRKHITIALCYTTTPGRLRGRFPHLESLKLKGKPRAAMFNLIMEDWGGYVTPWVKEISDY-FDCLKSLHFRRMIVKDSDLQLLAQARGRVLLVLKLDKCSGFSTDGLLHVGRSCRNLRTLFLEESQIVDKDGEWLHELAMNNTVLETLNFYMTELATVQFEDLELIARNCRSLTSMKIS-DFEILDLVGFFRAATALEEFAGGSFSEQS------------DKYSAVSFPPKLCRLGLNYMGKNEMPIVFPFASLLKKLDLLYCL-LDTEDHCLLIQKCPNLEFLEARNVIGDRGLEVLAQSCKKLRRLRIERGADEQEMEDEEGVVSQRGLMALARGCLEIEYVAIYVSDITNAALECIGAHSKKLCDFRLVLLE--REERITDLPLDNGVRALLRGCQKLRRFALYLRSGGLTDVGLNYIGQYSPNVRWMLLGYVGESDAGLLEFSRGCPSLQKLEMRGCCFSERALAVAAMQLTSLRYLWVQGYRASET-GRDLLVMARPFWNIELIPSRGVTIN----------APD-REPVSIEHPAHILAYYSLAGPRTDFPSTVTPLD----------------- Vitis_vinifera_VvTIR1 ----------MAYS-FPEEVLEHVFSFIHTDKDRNAISLVCKSWYEVERWSRRRIFIGNCYAVSPGIVIRRFPELRSVALKGKPHFADFNLVPDGWGGNVYPWIAAMAMA-YPMLEELRLKRMVVTDESLELISRSFKN-FKVLVLSSCEGFSTDGLAAIAANCRNLRELDLRESEVDDFSGHWLTHFPDSCTSLVSLNISCLAS-EVSFSALERLVGRCPSLRTLRLNRAVPLDRLPNLLRRAPQLVELGTGAYSA-----EHRPEVFSSLAGAFSNCKELKSLSGFWDVVPDYLPAVYPACSGITSLNLSYAT-IQSPDLIKLVTQCQNLQRLWVLDYIEDSGLDALAASCKDLQELRVFPSEPYD-M-EGNVALTEQGLVSVSEGCPKLHSVLYFCRQMTNAALVSIAKNRPNMTRFRLCIIEPRTRDYQTLEPLDVGFGAIVEHCKELHRLSLS---GLLTDRVFEYIGTHAKKLEMLSVAFAGDGDLGLHHVLSGCKSLRKLEIRDCPFGDKALLANAAKLETMRSLWMSSCSVSFG-ACKLLGQKMPRLNVEVMDERG----------------RPDSRPESCSVEKLYIYRSVAGPRSDMPRFVWTM------------------ Zea_mays_ZmTIR1 ---------------FPEEVVEHIFSFLPSHSDRNTVSLVCKVWYEVERLSRRAVFVGNCYAVRPERVVLRFPNIKALTVKGKPHFADFNLVPPDWGGYAGPWIDAAARS-CVGLEELRMKRMVVFDENLELLARSFLR-FKVLVLISCEGFSTDGLAAIASHCKLLRELDLQENDVEDRGPRWLS-FPDSCTSLVSLNFACIKG-EVNSGALERLVARSPNLRSLRLNRSVSVDTLSKILLRAPNLEDLGTGNLTD-----EFQAESYSRLTSALEKCKKLRSLSGFWDASPICVPYIYPLCHQLTGLNLSYTPTLDYSDLAKMVSRCVKLQRLWVLDCISDKGLQVVASSCKDLQELRVFPSEFYV---PGASAVTEEGLVAISSGCPKLTSLLYFCHQMTNEALITVANNCPNFIRFRLCILEPKKPDAMTGQPLDEGFGAIVRECKGLRRLSIS---GLLTDKVFMYIGKHAKYLEMLSIAFAGDSDKGMMDVMNGCKNLRKLEIRDSPFGDVALLGNVAKYETMRSLWMSSCNVTLK-GCQVLASKMPMLNVEIMNELDG------------SSEMEN-HGDLSKVDKLYVYRTTAGARDDAPNFV--------------------- ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 632; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 632; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 632; END; BEGIN TREES; Title Auxin_receptor_Gene_family; ID 015c76fa4f2d1; LINK Taxa = Taxa; TRANSLATE [0] 1 Arabidopsis_thaliana_AtAFB2, [1] 2 Arabidopsis_thaliana_AtTIR1, [2] 3 Arabidopsis_thaliana_AtAFB3, [3] 4 Arabidopsis_thaliana_AtAFB4, [4] 5 Arabidopsis_thaliana_AtAFB5, [5] 6 Arabidopsis_thaliana_AtCOI1, [6] 7 Brassica_rapa_BrAFB2, [7] 8 Brassica_rapa_BrTIR1, [8] 9 Cicer_arietinum_CaAFB2, [9] 10 Cicer_arietinum_CaTIR1, [10] 11 Cucumis_sativus_CsAFB2, [11] 12 Citrus_sinensis_CsoAFB2, [12] 13 Citrus_sinensis_CsoCOI1, [13] 14 Citrus_sinensis_CsoTIR1, [14] 15 Cucumis_sativus_CsTIR1, [15] 16 Dimocarpus_longan_DlTIR1, [16] 17 Fragaria_vesca_FvAFB2, [17] 18 Fragaria_vesca_FvTIR1, [18] 19 Gossypium_hirsutum_GhTIR1, [19] 20 Glycine_max_GmAFB2, [20] 21 Glycine_max_GmTIR1, [21] 22 Musa_acuminata_MaTIR1, [22] 23 Malus_domestica_MdAFB2, [23] 24 Malus_domestica_MdTIR1, [24] 25 Nicotiana_tabacum_NtTIR1, [25] 26 Oryza_sativa_OsAFB2, [26] 27 Oryza_sativa_OsTIR1, [27] 28 Pyrus_x_bretschneideri_PbAFB2, [28] 29 Prunus_salicina_PsAFB2, [29] 30 Prunus_salicina_PsAFB5, [30] 31 Prunus_salicina_PsTIR1, [31] 32 Ricinus_communis_RcCOI1, [32] 33 Ricinus_communis_RcTIR1, [33] 34 Solanum_lycopersicum_SlCOI1, [34] 35 Solanum_lycopersicum_SlTIR1, [35] 36 Vitis_vinifera_VvAFB2, [36] 37 Vitis_vinifera_VvCOI1, [37] 38 Vitis_vinifera_VvTIR1, [38] 39 Zea_mays_ZmTIR1; TREE Imported_tree_1 = ((((((((((((24:0.04880618,31:0.03701472)0.5150:0.00197358,18:0.03813836)1.0000:0.03874299,33:0.05920477)0.5210:0.00460528,(19:0.08326731,(14:0.06666734,16:0.062064)0.8310:0.01001628)0.4620:0.00414005)0.2660:0.00205932,38:0.08102137)0.1580:0.00199508,15:0.10219102)0.2230:0.00265205,(10:0.04171278,21:0.04037677)1.0000:0.05745756)0.1710:0.00121043,(2:0.03119206,8:0.0378378)1.0000:0.06169039)0.4260:0.0032542,(25:0.0386582,35:0.05089404)1.0000:0.05230098)1.0000:0.06164983,(22:0.10603688,27:0.14769447)1.0000:0.05109684)0.9980:0.02735429,((26:0.05430571,39:0.05576891)1.0000:0.10223611,(((1:0.0297769,7:0.03365594)1.0000:0.03041583,3:0.06380059)1.0000:0.05506519,(11:0.11461769,(36:0.07994231,((9:0.05096865,20:0.05164329)1.0000:0.04487244,(12:0.07767802,(17:0.06381063,(29:0.04046607,(23:0.0300156,28:0.03341723)1.0000:0.02110109)0.9760:0.01687966)0.9950:0.01747124)0.7010:0.01068959)0.4260:0.00509151)0.6600:0.00866239)0.5980:0.00846968)1.0000:0.04208015)1.0000:0.03037769)1.0000:0.04904818,(30:0.13099511,(4:0.08655056,5:0.0738972)1.0000:0.05743773)1.0000:0.11442869,(6:0.13975733,(34:0.12969749,(13:0.11184961,(32:0.08556878,37:0.09167003)0.9450:0.01781457)0.6250:0.01022788)0.6290:0.00623148)1.0000:0.29972126); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1497107356920; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 897637259458163608; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 319964364047204226; mqVersion 320; checksumv 0 3 3513129744 null getNumChars 632 numChars 632 getNumTaxa 39 numTaxa 39 short false bits 1048575 states 1048575 sumSquaresStatesOnly 2.28192197043655E14 sumSquares 2.28192197043655E14 longCompressibleToShort false usingShortMatrix false NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 241; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1920 972; setLocation -2045 -240; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #897637259458163608 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 015c76fa4f2d1; toggleUseWeights off; endTell; setAssignedID 2519.1496649063771.635715233021587694; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1679 900; setLocation -2045 -240; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.ornamental.CircularTree.CircularTree; tell It; setEdgeWidth 2; getEmployee #mesquite.ornamental.NodeLocsCircular.NodeLocsCircular; tell It; branchLengthsToggle off; toggleScale on; endTell; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #319964364047204226 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 216; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1679 900; setLocation -2045 -240; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;