#NEXUS BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=39; TAXLABELS Aspergillus_clavatus_EAW09457 Aspergillus_fumigatus_EAL92714 Aspergillus_kawachii_GAA84384 'Aspergillus nidulans XP_660600' 'Aspergillus niger XP_001400367' 'Aspergillus oryzae XP_001818334' Aspergillus_terreus_EAU38363 Arabidopsis_thaliana_AEC10155 Arabidopsis_thaliana_AEE76905 Arabidopsis_thaliana_AEE79817 'Bombyx mori NP_001036824' Caenorhabditis_elegans_CAB09112 Caenorhabditis_remanei_EFO93790 Drosophila_melanogaster_AAF49449 Endocarpon_crystallinum_KX364209 Endocarpon_nigromarginatum_KX364211 Endocarpon_pusillum_AEH41465.1 Endocarpon_sinense_KX364210 Cladonia_macilenta_KE598558 Cladonia_metacorallifera_KI911114 Gyalolechia_flavorubescens_KE546969 Lasallia_putulata_JYIL01003806 Umbilicaria_muehlenbergii_KK106986 Homo_sapiens_O60869 'Kluyveromyces lactis XP_456195' Loa_loa_EFO23139 Methanocaldococcus_fervens_ACV25177 Mus_musculus_Q9JMG1 'Neurospora crassa XP_960690' 'Nicotiana tomentosiformis XP_009631709' Penicillium_rubens_CAP85687 Saccharomyces_cerevisiae_DAA11064 'Schizosaccharomyces pombe NP_595650' 'Sulfolobus solfataricus NP_341818' Triticum_aestivum_ACU43593 Trichoderma_reesei_EGR47693 Trichinella_spiralis_EFV53188 Thermoproteus_tenax_CBZ41801 Zygosaccharomyces_rouxii_CAR26769 ; END; BEGIN CHARACTERS; TITLE 'Multiprotein-bridging factor 1 (MBF1)'; DIMENSIONS NCHAR=122; FORMAT DATATYPE = Protein GAP = - MISSING = ?; MATRIX Aspergillus_clavatus_EAW09457 VTRIGGAAPRETVVKGKSALNAAQRQGLIIGTEKKYATGNEGQHLTKVDRSDDIVKPVGLQVADAIKKRRYKMTQKELATKCNTTITIVQDFEGTAAPDQKVLSAMERVLNIKLRGADIGKE Aspergillus_fumigatus_EAL92714 VTRIGGAAPRETVVRGKSALNAAQRQGLVIATEKKYATGNEGQHLTKVDRSDDIVKPVGLQVADAIKKRRYKMTQKELATKCNTTITVIQDFEGTAAPDQKVLSAMERVLNIKLRGSDIGKE Aspergillus_kawachii_GAA84384 VTRIGGPATRETVVKGKSALNAAQRQGLVIGTEKKYATGNEGQHLTKVDRSDDIVKPVGYQVADAIKKRRYKMTQKELATKCNTTITVVQDFEGTAAPDQKVLSAMERVLNVKLRGTGIGQE 'Aspergillus nidulans XP_660600' VTRIGGPVVRETVIKGKSALNAAQRQGLVVGTEKKFASGNEGQHLTKVDRSDDIVKPVGLQVADAIKKRRYKMTQKELATKCNTTVTVIQDFEGTAAPDQKVLSAMERVLNIKLRGSDIGKE 'Aspergillus niger XP_001400367' VTRIGGPATRETVVKGKSALNAAQRNGLVIGTEKKYATGNEGQHLTKVDRSDDIVKPVGYQVADAIKKRRYKMTQKELATKCNTTITVVQDFEGTAAPDQKVLSAMERVLNVKLRGTGIGQE 'Aspergillus oryzae XP_001818334' TTRIGGAAPRETVVKGKSALNAAQRQGLVIGTEKKYATGNEGQHLTKVDRSDDIIKPVGYQVADAIKKRRYKMTQKELATKCNTTVTVVQDFEGTATPDQKVLSAMERVLNIKLRGSDIGKE Aspergillus_terreus_EAU38363 VTRIGGPAPRETVVKGKSALNAAQRQGLVIGTEKKYATGNEGQHLTKVDRSDDIVKPVGMKVADAIKKRRYKMTQKELATKCNTTPGVIQEFEGTATPDQKVLSAMERVLNVKLRGNDIGAE Arabidopsis_thaliana_AEC10155 VVIRK---ANAAAKRDEKTVNAARRSGADIETVRKFNAGTTSLNTKMLDDDTENLTHVPTELKKAIMQARKKLTQSQLAQIINEKPQVIQEYEGKAIPNQQILSKLERALGAKLRGKK---- Arabidopsis_thaliana_AEE76905 VVIRK---PNAAAKRDEKTVNAARRSGADIETVRKFNAGSTSLNTKKLDDDTENLSHVPTELKKAIMQARKKLTQSQLAHLINEKPQVIQEYEGKAIPNQQILSKLERALGAKLRGKK---- Arabidopsis_thaliana_AEE79817 VVLHK---QKSQDLRDPKAVNAALRNGVAVQTVKKFDAGSPVINTKKLEEETEPAAMVKAEVRLMIQKARKKMSQADLAKQINERTQVVQEYEGKAVPNQAVLAKMEKVLGVKLRGK-IGK- 'Bombyx mori NP_001036824' VTILR--PPKASALKTEQAVNAARRQGIPVDTQQKYGAGTTTKNTAKLDRETEELRHIPLDLGKLIMQGRKGMSQKDLATKICEKPQIVNDYEGRGIPNNIVLGKIERAIGIKLRGKERGQP Caenorhabditis_elegans_CAB09112 VTMIT--GPVNKTLKSAAQLNAAQRAGVDISTEKKTMSGGANKNTLRLDEETEELHHVALSLGKVMQQARKGWTQKDLSTQINEKPQVVGEYEGKAVPNQQIMAKMERALGVKLRGKDIGMP Caenorhabditis_remanei_EFO93790 VTMIT--GPVNKTLKSASQLNAAQRAGVEISTEKKTMSGGANKNTLRLDEETEELHHVTLSLGKVMQQARKGWTQKDLSTQINEKPQVVGEYEGKAVPNQQILAKMERALGVKLRGKDIGKP Drosophila_melanogaster_AAF49449 VTVLR--APKSSTLKTESAVNQARRQGVAVDTQQKYGAGTTTKNTAKLDRETEELRHIPLDVGKLIQQGRKGLSQKDLATKICEKQQVVTDYEGRGIPNNLILGKMERVLGIKLRGKERGQP Endocarpon_crystallinum_KX364209 FTRIGGGASRPKTIKTKAELNAAMRSG-DVSSQKKFGSANEGQRLTKVANTDGIIKPVHPDAKIIPAEARKGWEQKDLARLCNIDVSIVQKFEGKETPNQKALGAMERHLGISLRGDTFGKP Endocarpon_nigromarginatum_KX364211 FTRIGGGTQRPITIKSQSELNAAMRSG-GVSSQKRFGSANEGQRLTKVANTDEIIKPVHPDAKTIPAAARKGWEQKDLARLCNIDVSIVQKFEGKETPNQKALGAMERHLGISLRGDTFGKP Endocarpon_pusillum_AEH41465.1 FTHIGGGAPRSKTIKSKAELNAAMRSG-DVSSQKRFGSANEGQRLTKIANTDGIIKPVHPDAKTVPGKARKGWEQKDLARLCNIDVSIVQKFEGKETPSQKALGAMERHLGISLRGDTFGKE Endocarpon_sinense_KX364210 FTRIGGGAPHSKTIKSKAELNAAMRAG-DVSSQKRFGSANEGQRLTKVANTDGIIKPVHPDAKIIPAKERKGWEQKDLARLCNIDVSIVQKFEGKETPNQKALGAMERHLGISLRGNTFGKP Cladonia_macilenta_KE598558 VTKIGGAAQRETVVRGKGALNAAQRSGAIVGTEKKFATGNEGQRLTKVDRSDDIIAPVPAEIGQNIRNRRYKMTQAQLAQKVNCQANDIKLLEGDAIKNQGLLNRVARVLKV---SPKTGLP Cladonia_metacorallifera_KI911114 VTKIGGAAQRETVVRGKGALNAAQRSGAIVGTEKKFATGNEGQRLTKVDRSDDIIAPVPAEIGQNIRNRRYKMTQAQLAQKVNCQANDIKLLEGDAIKNQGLLNRVARVLKV---SPKTGLP Gyalolechia_flavorubescens_KE546969 VTKIGGASQRETVVRGKAALNAAQRSGNIVGTEKKFTAGNEGQRLTKVDRSDDIVPVVSADIGAAIRNRRYKMTQADLAKKCNVPANDIKTLEGQAIKNQQLLNKVARVLKI---SPKTGKP Lasallia_putulata_JYIL01003806 VTKIGASSQRETVVRGKGALNAAARSGTIIGTEKKFATGNEGQRLTKVDRADDIVAPMDGKIGGLIAARRYKLTQSELAKKINVDVAKIKKLEPNDVLDAAVLGKVEKALNMRFRGAKAGQP Umbilicaria_muehlenbergii_KK106986 VTKIGAASQRETVVRGKGALNAAARSGTIIGTEKKFAVGNEGQRLTKVDRADDIVAPMDAKIGGLIAARRYKMTQSELAKKINVDVAKIKKLEPNDVLDGAVLGKVEKALNMRFRGAKAGQP Homo_sapiens_O60869 VTVLR--GPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQITKNTAKLDRETEELHHVTLEVGKVIQQGRKGLTQKDLATKINEKPQVIADYEGRAIPNNQVLGKIERAIGLKLRGKDIGKP 'Kluyveromyces lactis XP_456195' STVIGGGGPRQQVARTQGQINEARRSGMVLSVDKKYGTTNEGQRLTKVDRETDIVKPIDVSVGKAIQKGRKNLTQKDLATKINEKPTIVNDYEGRGIPNQQILGKMERALGIKLRGKNIGEP Loa_loa_EFO23139 VTILH--GPAQRTLRTAAELNAAQRRGMAIETSKKMMAGGATKNTARLDEETEELHHVSLTLGKVMQQARKEWTQKDLATHINEKPQVVAEYEGKAVPNQQILAKMERALGVKLRGKDMGQP Methanocaldococcus_fervens_ACV25177 CELCG---KLYKVIIEGSEMQVCKECAKFGKSPKTYSRLGTNMQTKKPAKRRRDIFDLREDYGDVIREARRGLSIEDLAKKLKMKASTLQKFEYELEPNEREIKILEKELKINLEGFTLGDF Mus_musculus_Q9JMG1 VTVLR--GPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQITKNTAKLDRETEELHHVTLEVGKVIQRGRKGLTQKDLATKINEKPQVIADYEGRAIPNNQVLGKIERAIGLKLRGKDIGKP 'Neurospora crassa XP_960690' AVKIGGAGPRETVVRGKSALNAAQRSGNIIATEKKYAAGNEGQRLTMVDRSDDIVKPVSKEVGAAIQKARKAMTQKELATRCNSTQAIIAQYEGEGVPDQKLLGNLERVLNVKLRGSDIGKP 'Nicotiana tomentosiformis XP_009631709' VVIRK---PTAAARKDEKAVNAARRSGAEIETIRKSAAGTTTLNTRKLDEDTENLAHVPTELKKAIMQARKKLTQAQLAQLINEKPQIIQEYEGKAIPNQQIISKLERALGAKLRGKK---- Penicillium_rubens_CAP85687 TTKIGGAQPRETVVKGKSALNAAQRSG-SVYTEKKYTTGNEGQHLTKVDRSDDIVKPVGHAVADAIKRRRYKMTQKELATKCNTTITIVQDFEGTATPDQKVLGSMERVLNIKLRGSDIGSE Saccharomyces_cerevisiae_DAA11064 NTIIGGSGPRANVARSQGQINAARRQGLVVSVDKKYGSTNEGQRLTKVDRETDIVKPLDPNVGRAISRARKKMSQKDLATKINEKPTVVNDYEARAIPNQQVLSKLERALGVKLRGNNIGSP 'Schizosaccharomyces pombe NP_595650' VTKIGGPGARTHVAKTQSQINSARRAGAIVGTEKKYATGNAGQHLTKIDRENEVKPPTGRSVAQAIQKGRKGWAQKDLSQRINEKPQVVNDYEGRAIPNQQVLSKMERALGIKLRGQNIGAP 'Sulfolobus solfataricus NP_341818' CELCG---KGITVSYEGSIITVCNSCYDRIRKHAVIVKADRKKATLKPPKMENAEL-IVTDYYKIIKTARLGISQQQLAQKLKVSENIVKRFEGKLKPTISQARQLEKILGIKLTGLTLGDV Triticum_aestivum_ACU43593 VVLRR---PKAADLKSAKAVNQALRTGAPVETVRKAAAGTVAAPARKLDEMTEPAGLVGGDVRAAIQKARKGWSQAELAKRINERAQVVQEYEGKAVPVQAVLAKMERALEVKLRGKAVGAP Trichoderma_reesei_EGR47693 ATKIGGASDRETVIRGKSALNAAQRAGAAIATEKKYSTANEGQRLTKVDRSDDIIKPVGKEVGKAIEQGRPTMTQAELGKKIGETAATVASYEGTATPDQNILSKMERVLNVKLRGANIGAP Trichinella_spiralis_EFV53188 VTILR--QPRKSEARQEKVVRAAQRSGQEIETSKKFNAATMSASVSKLSSDLEEFHHVGMEVGRLIQRGRKKWTQAELAKQINEKPSVIVEYEGRAVVNNQILGKIERAIGIKLRGKDKGQP Thermoproteus_tenax_CBZ41801 CDICG---EPYVIKLDNAVLHVCERCARSYGGTVKVESPPQQRRITKRGAEPRY---VVEEYAEVIKRARLGLSREALASYIGVKESVLKRIEGQLMPDIELARKLEKALGVKLRELTLGDV Zygosaccharomyces_rouxii_CAR26769 TTVIGGSGPRANVARSQGQVNEAKRSGLVLSVDKKYGTTNEGQRLTKVDRETDIVKPLDTEVGKIISRARKKLSQKDLATRINEKPTVVNDYEARAIPNQQVLSKIERTLGVKLRGKNIGEP ; END; BEGIN TREES; Title 'Multiprotein-bridging factor 1 (MBF1)'; LINK Taxa = Taxa; TRANSLATE [0] 1 Aspergillus_clavatus_EAW09457, [1] 2 Aspergillus_fumigatus_EAL92714, [2] 3 Aspergillus_kawachii_GAA84384, [3] 4 'Aspergillus nidulans XP_660600', [4] 5 'Aspergillus niger XP_001400367', [5] 6 'Aspergillus oryzae XP_001818334', [6] 7 Aspergillus_terreus_EAU38363, [7] 8 Arabidopsis_thaliana_AEC10155, [8] 9 Arabidopsis_thaliana_AEE76905, [9] 10 Arabidopsis_thaliana_AEE79817, [10] 11 'Bombyx mori NP_001036824', [11] 12 Caenorhabditis_elegans_CAB09112, [12] 13 Caenorhabditis_remanei_EFO93790, [13] 14 Drosophila_melanogaster_AAF49449, [14] 15 Endocarpon_crystallinum_KX364209, [15] 16 Endocarpon_nigromarginatum_KX364211, [16] 17 Endocarpon_pusillum_AEH41465.1, [17] 18 Endocarpon_sinense_KX364210, [18] 19 Cladonia_macilenta_KE598558, [19] 20 Cladonia_metacorallifera_KI911114, [20] 21 Gyalolechia_flavorubescens_KE546969, [21] 22 Lasallia_putulata_JYIL01003806, [22] 23 Umbilicaria_muehlenbergii_KK106986, [23] 24 Homo_sapiens_O60869, [24] 25 'Kluyveromyces lactis XP_456195', [25] 26 Loa_loa_EFO23139, [26] 27 Methanocaldococcus_fervens_ACV25177, [27] 28 Mus_musculus_Q9JMG1, [28] 29 'Neurospora crassa XP_960690', [29] 30 'Nicotiana tomentosiformis XP_009631709', [30] 31 Penicillium_rubens_CAP85687, [31] 32 Saccharomyces_cerevisiae_DAA11064, [32] 33 'Schizosaccharomyces pombe NP_595650', [33] 34 'Sulfolobus solfataricus NP_341818', [34] 35 Triticum_aestivum_ACU43593, [35] 36 Trichoderma_reesei_EGR47693, [36] 37 Trichinella_spiralis_EFV53188, [37] 38 Thermoproteus_tenax_CBZ41801, [38] 39 Zygosaccharomyces_rouxii_CAR26769; TREE 'PAUP_1' = ((38:0.72482,(27:1.007063,34:0.879051):0.205087):0.869645,(((10:0.278734,35:0.272983):0.36912,((37:0.408846,(30:0.081471,(8:0.033686,9:0.019328):0.058379):0.382532):0.065487,((26:0.063307,(12:0.029998,13:0.01369):0.202681):0.22755,((11:0.114429,14:0.067795):0.254024,(24:0.0,28:0.008674):0.182971):0.098081):0.087842):0.0000282661):0.362811,((16:0.044627,(17:0.058453,(15:0.041277,18:0.039871):0.008389):0.037122):0.826852,((33:0.29299,(25:0.068757,(32:0.110474,39:0.063914):0.131639):0.200805):0.117917,(((22:0.029009,23:0.013904):0.328067,(21:0.095556,(19:0.0,20:0.0):0.150427):0.141512):0.283729,((29:0.206879,36:0.268991):0.065164,(31:0.096715,(6:0.015894,((4:0.075178,(1:0.028105,2:0.022791):0.0):0.012891,(7:0.078576,(3:0.0,5:0.008505):0.034098):0.023175):0.016445):0.048395):0.184074):0.009482):0.300591):0.01401):0.15232):0.869645)[% ] [% ] [% setBetweenBits = selected ]; END;