#NEXUS BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=23; TAXLABELS Cordyceps_militaris_8b8l Cordyceps_militaris_8b8m Cordyceps_militaris_C14 Cordyceps_militaris_C19 Cordyceps_militaris_C20 Cordyceps_militaris_C7 Cordyceps_militaris_CM001 Cordyceps_militaris_CMKP094 Cordyceps_militaris_CMKar07 Cordyceps_militaris_CMMR06 Cordyceps_militaris_CMZBS09 Cordyceps_militaris_Cnap001 Cordyceps_militaris_Crbol001 Cordyceps_militaris_NBRC30377 Cordyceps_militaris_NBRC9787 Cordyceps_militaris_OSC93623 Cordyceps_militaris_Pad1 Cordyceps_militaris_Pad2 Cordyceps_militaris_Pad3 Cordyceps_militaris_Pad45 Cordyceps_militaris_Pad53 Cordyceps_militaris_Sm1 Microhilum_oncoperae_AFSEF4358 ; END; BEGIN CHARACTERS; TITLE Cordyceps_militaris_TEF_alignment_matrix; DIMENSIONS NCHAR=265; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Cordyceps_militaris_8b8l CCTCCAGCTTCATCAAGAAGGTCGGCTTCAACCCCGACACTGTCCCCTTCGTCCCCATCTCCGGTTTCCACGGCGACAACATGGTTCTGCCCACCGAGAACATGCCCTGGTACACCGGCTGGACCAAGACGTCCAAGGCTACCGGCAAGACTGTCACTGGCAAGACCCTCCTGCAGGCCATCGACGCCATTGAGCCCCCTGAGCGTCCCACCAACAAGCCCCTCCGCCTTCCCCTTCAGGATGTCTACAAGATCGGTGGTATCGG Cordyceps_militaris_8b8m CCTCCAGCTTCATCAAGAAGGTCGGCTTCAACCCCGACACTGTCCCCTTCGTCCCCATCTCCGGTTTCCACGGCGACAACATGGTTCTGCCCACCGAGAACATGCCCTGGTACACCGGCTGGACCAAGACGTCCAAGGCTACCGGCAAGACTGTCACTGGCAAGACCCTCCTGCAGGCCATCGACGCCATTGAGCCCCCTGAGCGTCCCACCAACAAGCCCCTCCGCCTTCCCCTTCAGGATGTCTACAAGATCGGTGGTATCGG Cordyceps_militaris_C14 CCTCCAGCTTCATCAAGAAGGTCGGCTTCAACCCCGACACTGTCCCCTTCGTCCCCATCTCCGGTTTCCACGGCGACAACATGGTTCTGCCCACCGAGAACATGCCCTGGTACACCGGCTGGACCAAGACGTCCAAGGCTACCGGCAAGACTGTCACTGGCAAGACCCTCCTGCAGGCCATCGACGCCATTGAGCCCCCTGAGCGTCCCACCAACAAGCCCCTCCGCCTTCCCCTTCAGGATGTCTACAAGATCGGTGGTATCGG Cordyceps_militaris_C19 CCTCCAGCTTCATCAAGAAGGTCGGCTTCAACCCCGACACTGTCCCCTTCGTCCCCATCTCCGGTTTCCACGGCGACAACATGGTTCTGCCCACCGAGAACATGCCCTGGTACACCGGCTGGACCAAGACGTCCAAGGCTACCGGCAAGACTGTCACTGGCAAGACCCTCCTGCAGGCCATCGACGCCATTGAGCCCCCTGAGCGTCCCACCAACAAGCCCCTCCGCCTTCCCCTTCAGGATGTCTACAAGATCGGTGGTATCGG Cordyceps_militaris_C20 CCTCCAGCTTCATCAAGAAGGTCGGCTTCAACCCCGACACTGTCCCCTTCGTCCCCATCTCCGGTTTCCACGGCGACAACATGGTTCTGCCCACCGAGAACATGCCCTGGTACACCGGCTGGACCAAGACGTCCAAGGCTACCGGCAAGACTGTCACTGGCAAGACCCTCCTGCAGGCCATCGACGCCATTGAGCCCCCTGAGCGTCCCACCAACAAGCCCCTCCGCCTTCCCCTTCAGGATGTCTACAAGATCGGTGGTATCGG Cordyceps_militaris_C7 CCTCCAGCTTCATCAAGAAGGTCGGCTTCAACCCCGACACTGTCCCCTTCGTCCCCATCTCCGGTTTCCACGGCGACAACATGGTTCTGCCCACCGAGAACATGCCCTGGTACACCGGCTGGACCAAGACGTCCAAGGCTACCGGCAAGACTGTCACTGGCAAGACCCTCCTGCAGGCCATCGACGCCATTGAGCCCCCTGAGCGTCCCACCAACAAGCCCCTCCGCCTTCCCCTTCAGGATGTCTACAAGATCGGTGGTATCGG Cordyceps_militaris_CM001 CCTCCAGCTTCATCAAGAAGGTCGGCTTCAACCCCGACACTGTCCCCTTCGTCCCCATCTCCGGTTTCCACGGCGACAACATGGTTCTGCCCACCGAGAACATGCCCTGGTACACCGGCTGGACCAAGACGTCCAAGGCTACCGGCAAGACCGTCACTGGCAAGACCCTCCTGCAGGCCATCGACGCCATTGAGCCCCCAGAGCGTCCCACCAACAAGCCCCTCCGCCTTCCCCTCCAGGATGTTTACAAGATCGGTGGTATCGG Cordyceps_militaris_CMKP094 CCTCCAGCTTCATCAAGAAGGTCGGCTTCAACCCCGACACTGTCCCCTTCGTCCCCATCTCCGGTTTCCACGGCGACAACATGGTTCTGCCCACCGAGAACATGCCCTGGTACACCGGCTGGACCAAGACGTCCAAGGCTACCGGCAAGACTGTCACTGGCAAGACCCTCCTGCAGGCCATCGACGCCATTGAGCCCCCTGAGCGTCCCACCAACAAGCCCCTCCGCCTTCCCCTTCAGGATGTCTACAAGATCGGTGGTATCGG Cordyceps_militaris_CMKar07 CCTCCAGCTTCATCAAGAAGGTCGGCTTCAACCCCGACACTGTCCCCTTCGTCCCCATCTCCGGTTTCCACGGCGACAACATGGTTCTGCCCACCGAGAACATGCCCTGGTACACCGGCTGGACCAAGACGTCCAAGGCTACCGGCAAGACCGTCACTGGCAAGACCCTCCTGCAGGCCATCGACGCCATTGAGCCCCCAGAGCGTCCCACCAACAAGCCCCTCCGCCTTCCCCTCCAGGATGTTTACAAGATCGGTGGTATCGG Cordyceps_militaris_CMMR06 CCTCCAGCTTCATCAAGAAGGTCGGCTTCAACCCCGACACTGTCCCCTTCGTCCCCATCTCCGGTTTCCACGGCGACAACATGGTTCTGCCCACCGAGAACATGCCCTGGTACACCGGCTGGACCAAGACGTCCAAGGCTACCGGCAAGACCGTCACTGGCAAGACCCTCCTGCAGGCCATCGACGCCATTGAGCCCCCAGAGCGTCCCACCAACAAGCCCCTCCGCCTTCCCCTCCAGGATGTTTACAAGATCGGTGGTATCGG Cordyceps_militaris_CMZBS09 CCTCCAGCTTCATCAAGAAGGTCGGCTTCAACCCCGACACTGTCCCCTTCGTCCCCATCTCCGGTTTCCACGGCGACAACATGGTTCTGCCCACCGAGAACATGCCCTGGTACACCGGCTGGACCAAGACGTCCAAGGCTACCGGCAAGACTGTCACTGGCAAGACCCTCCTGCAGGCCATCGACGCCATTGAGCCCCCTGAGCGTCCCACCAACAAGCCCCTCCGCCTTCCCCTTCAGGATGTCTACAAGATCGGTGGTATCGG Cordyceps_militaris_Cnap001 CCTCCAGCTTCATCAAGAAGGTCGGCTTCAACCCCGACACTGTCCCCTTCGTCCCCATCTCCGGTTTCCACGGCGACAACATGGTTCTGCCCACCGAGAACATGCCCTGGTACACCGGCTGGACCAAGACGTCCAAGGCTACCGGCAAGACTGTCACTGGCAAGACCCTCCTGCAGGCCATCGACGCCATTGAGCCCCCTGAGCGTCCCACCAACAAGCCCCTCCGCCTTCCCCTTCAGGATGTCTACAAGATCGGTGGTATCGG Cordyceps_militaris_Crbol001 CCTCCAGCTTCATCAAGAAGGTCGGCTTCAACCCCGACACTGTCCCCTTCGTCCCCATCTCCGGTTTCCACGGCGACAACATGGTTCTGCCCACCGAGAACATGCCCTGGTACACCGGCTGGACCAAGACGTCCAAGGCTACCGGCAAGACTGTCACTGGCAAGACCCTCCTGCAGGCCATCGACGCCATTGAGCCCCCTGAGCGTCCCACCAACAAGCCCCTCCGCCTTCCCCTTCAGGATGTCTACAAGATCGGTGGTATCGG Cordyceps_militaris_NBRC30377 CCTCCAGCTTCATCAAGAAGGTCGGCTTCAACCCCGACACTGTCCCCTTCGTCCCCATCTCCGGTTTCCACGGCGACAACATGGTTCTGCCCACCGAGAACATGCCCTGGTACACCGGCTGGACCAAGACGTCCAAGGCTACCGGCAAGACCGTCACTGGCAAGACCCTCCTGCAGGCCATCGACGCCATTGAGCCCCCAGAGCGTCCCACCAACAAGCCCCTCCGCCTTCCCCTCCAGGATGTTTACAAGATCGGTGGTATCGG Cordyceps_militaris_NBRC9787 CCTCCAGCTTCATCAAGAAGGTCGGCTTCAACCCCGACACTGTCCCCTTCGTCCCCATCTCCGGTTTCCACGGCGACAACATGGTTCTGCCCACCGAGAACATGCCCTGGTACACCGGCTGGACCAAGACGTCCAAGGCTACCGGCAAGACCGTCACTGGCAAGACCCTCCTGCAGGCCATCGACGCCATTGAGCCCCCAGAGCGTCCCACCAACAAGCCCCTCCGCCTTCCCCTCCAGGATGTTTACAAGATCGGTGGTATCGG Cordyceps_militaris_OSC93623 CCTCCAGCTTCATCAAGAAGGTCGGCTTCAACCCCGACACTGTCCCCTTCGTCCCCATCTCCGGTTTCCACGGCGACAACATGGTTCTGCCCACCGAGAACATGCCCTGGTACACCGGCTGGACCAAGACGTCCAAGGCTACCGGCAAGACCGTCACTGGCAAGACCCTCCTGCAGGCCATCGACGCCATTGAGCCCCCTGAGCGTCCCACCAACAAACCCCTCCGCCTTCCCCTTCAGGATGTCTACAAGATCGGTGGTATTGG Cordyceps_militaris_Pad1 CCTCCAGCTTCATCAAGAAGGTCGGCTTCAACCCCGACACTGTCCCCTTCGTCCCCATCTCCGGTTTCCACGGCGACAACATGGTTCTGCCCACCGAGAACATGCCCTGGTACACCGGCTGGACCAAGACGTCCAAGGCTACCGGCAAGACCGTCACTGGCAAGACCCTCCTGCAGGCCATCGACGCCATTGAGCCCCCAGAGCGTCCCACCAACAAGCCCCTCCGCCTTCCCCTCCAGGATGTTTACAAGATCGGTGGTATCGG Cordyceps_militaris_Pad2 CCTCCAGCTTCATCAAGAAGGTCGGCTTCAACCCCGACACTGTCCCCTTCGTCCCCATCTCCGGTTTCCACGGCGACAACATGGTTCTGCCCACCGAGAACATGCCCTGGTACACCGGCTGGACCAAGACGTCCAAGGCTACCGGCAAGACCGTCACTGGCAAGACCCTCCTGCAGGCCATCGACGCCATTGAGCCCCCAGAGCGTCCCACCAACAAGCCCCTCCGCCTTCCCCTCCAGGATGTTTACAAGATCGGTGGTATCGG Cordyceps_militaris_Pad3 CCTCCAGCTTCATCAAGAAGGTCGGCTTCAACCCCGACACTGTCCCCTTCGTCCCCATCTCCGGTTTCCACGGCGACAACATGGTTCTGCCCACCGAGAACATGCCCTGGTACACCGGCTGGACCAAGACGTCCAAGGCTACCGGCAAGACCGTCACTGGCAAGACCCTCCTGCAGGCCATCGACGCCATTGAGCCCCCAGAGCGTCCCACCAACAAGCCCCTCCGCCTTCCCCTCCAGGATGTTTACAAGATCGGTGGTATCGG Cordyceps_militaris_Pad45 CCTCCAGCTTCATCAAGAAGGTCGGCTTCAACCCCGACACTGTCCCCTTCGTCCCCATCTCCGGTTTCCACGGCGACAACATGGTTCTGCCCACCGAGAACATGCCCTGGTACACCGGCTGGACCAAGACGTCCAAGGCTACCGGCAAGACCGTCACTGGCAAGACCCTCCTGCAGGCCATCGACGCCATTGAGCCCCCAGAGCGTCCCACCAACAAGCCCCTCCGCCTTCCCCTCCAGGATGTTTACAAGATCGGTGGTATCGG Cordyceps_militaris_Pad53 CCTCCAGCTTCATCAAGAAGGTCGGCTTCAACCCCGACACTGTCCCCTTCGTCCCCATCTCCGGTTTCCACGGCGACAACATGGTTCTGCCCACCGAGAACATGCCCTGGTACACCGGCTGGACCAAGACGTCCAAGGCTACCGGCAAGACCGTCACTGGCAAGACCCTCCTGCAGGCCATCGACGCCATTGAGCCCCCAGAGCGTCCCACCAACAAGCCCCTCCGCCTTCCCCTCCAGGATGTTTACAAGATCGGTGGTATCGG Cordyceps_militaris_Sm1 CCTCCAGCTTCATCAAGAAGGTCGGCTTCAACCCCGACACTGTCCCCTTCGTCCCCATCTCCGGTTTCCACGGCGACAACATGGTTCTGCCCACCGAGAACATGCCCTGGTACACCGGCTGGACCAAGACGTCCAAGGCTACCGGCAAGACTGTCACTGGCAAGACCCTCCTGCAGGCCATCGACGCCATTGAGCCCCCTGAGCGTCCCACCAACAAGCCCCTCCGCCTTCCCCTTCAGGATGTCTACAAGATCGGTGGTATCGG Microhilum_oncoperae_AFSEF4358 CCTCCAACTTCATCAAGAAGGTCGGCTTCAACCCCGACACTGTCCCCTTCGTCCCCATCTCCGGTTTCCACGGCGACAACATGGTTCTGCCCACCGACAACATGCCCTGGTACAGCGGCTGGACCAAGACGTCCAAGGCTACCGGCAAGACTGTCACTGGCAAGACCCTCCTTCAGGCCATCGACGCCATCGAGCCCCCGGAGCGTCCCACCAGCAAGCCCCTCCGCCTTCCCCTCCAGGATGTCTACAAGATCGGTGGTATCGG ; END; BEGIN TREES; Title Cordyceps_militaris_TEF; LINK Taxa = Taxa; TRANSLATE [0] 1 Cordyceps_militaris_8b8l, [1] 2 Cordyceps_militaris_8b8m, [2] 3 Cordyceps_militaris_C14, [3] 4 Cordyceps_militaris_C19, [4] 5 Cordyceps_militaris_C20, [5] 6 Cordyceps_militaris_C7, [6] 7 Cordyceps_militaris_CM001, [7] 8 Cordyceps_militaris_CMKP094, [8] 9 Cordyceps_militaris_CMKar07, [9] 10 Cordyceps_militaris_CMMR06, [10] 11 Cordyceps_militaris_CMZBS09, [11] 12 Cordyceps_militaris_Cnap001, [12] 13 Cordyceps_militaris_Crbol001, [13] 14 Cordyceps_militaris_NBRC30377, [14] 15 Cordyceps_militaris_NBRC9787, [15] 16 Cordyceps_militaris_OSC93623, [16] 17 Cordyceps_militaris_Pad1, [17] 18 Cordyceps_militaris_Pad2, [18] 19 Cordyceps_militaris_Pad3, [19] 20 Cordyceps_militaris_Pad45, [20] 21 Cordyceps_militaris_Pad53, [21] 22 Cordyceps_militaris_Sm1, [22] 23 Microhilum_oncoperae_AFSEF4358; TREE 'PAUP_1' = (23:0.0208305,((21:0.0,20:0.0,19:0.0,18:0.0,17:0.0,15:0.0,14:0.0,10:0.0,7:0.0,9:0.0):0.009722,(16:0.011876,8:0.0,11:0.0,12:0.0,13:0.0,22:0.0,(6:0.0,(5:0.0,(4:0.0,(3:0.0,(1:0.0,2:0.0):0.0):0.0):0.0):0.0):0.0):0.007947):0.0208305)[% ] [% ] [% setBetweenBits = selected ]; END;