#NEXUS [written Sun Jun 18 19:05:35 BRT 2017 by Mesquite version 3.2 (build 801) at DESKTOP-492GN76/192.168.0.6] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=13; TAXLABELS Pseudocercospora_vitis_CBS132012 Dictyosporina_ferruginea_COAD2272 Xenomycosphaerella_yunnanensis_CBS119975 Xenomycosphaerella_elongata_CBS120735 Zasmidium_cellare_CBS146.36 Zasmidium_cellare_TEA096 Mycosphaerella_punctiformis_CBS113265 'Stigmina platani STE-U4299' Stigmina_platani Xenosonderhenia_syzygii_CPC19790 Neoceratosperma_eucalypti_CPC23465 Xenostigmina_zilleri_CBS115686 Xenostigmina_zilleri_CBS124108 ; END; BEGIN CHARACTERS; TITLE Character_Matrix; LINK TAXA = Taxa; DIMENSIONS NCHAR=527; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Pseudocercospora_vitis_CBS132012 ?????????ATCATTACTGAGTGAGGGC-TCGCGCCCG-ACCTCCAACCC--TTTGTGAACCAAATCCTGTTGCTTCGGGGGCGACCCTGCCGGCACACCGTCGCCG----GGCGCCCCCGGAGG--TCTTCAAACAC---TGCATCTTTG---CGTCGGAGTTTAAATC-AAATTAAACAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTTCACCACTCAAGCCTAGCTTGGTATTGGG----CGTCGCGGCTC--------CGCGCGCCTTAAAGTCT--CCGGCTGAGCTGTCCGTCTCTAAGCGTTGTG-GAAATTCAACTATTCGC-TTCGGAG-TGCGGGCGGCCGCGGCCGTTAAATCTTTATTCAAAGGTTGACC????????????????? Dictyosporina_ferruginea_COAD2272 ????????????????????????????????????????????????????????????????????????????CGGGGGCGACCCTGCCGT---TCCGACGGCG----AGCGCCCCCGGAGA--CCGTCCAACGC---TGCATCCGTG---CGTCCGAGTCTGAATC-AAATCAAACAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCCCCGCGGTATTCCGCGGGGCATGCCTGTTCGAGCGTCATTTCACCACTCAAGCCCGGCTTGGTATTGGG----CGCCGCGTCTC------GACGCGCGCCTCAAAGTCTC-CCGGCTGAGCCGTCCGTCTCCCAGCGTTGTG-ACCCAGTG-----TCGC-TGCGGAG-CACAGGTGGCCGCGGCCGTTCTA-ACTTTTCGAAAGGTTGACCTCGGATCAGGTAGGGAT Xenomycosphaerella_yunnanensis_CBS119975 ?????????ATCATTACTGAGTGAGGGCCTCCGGTCCG-ACCTCCAACCC--TTTGTGAACCAACACT-GTTGCTTCGGGGGCGACCCTGCCTT---TCGGGC--AG----TGCGCCCCCGGAGG-ATATCAAAACGC---TGCATCTTTG---CGTCGGAGTATCAATC-AAATTGAACAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCGTGGTATTCCGCGGGGCATGCCTGTTCGAGCGTCATTTCACCACTCAAGCCTGGCTTGGTATTGGG----CGTCGCGAGTC--------CGCGCGCCTCAAAGTCT--CCGGCTGAGCTGTCCGTCTCCCAGCGTTGTG-AATCTCAT-----TCGC-TACGGAGTCTCGGGCAGCCGCGGCCGTTAAAC--TTATCTAAAGGTTGACC????????????????? Xenomycosphaerella_elongata_CBS120735 ?????????ATCATTACTGAGTGAGGGT-TCACGCCCG-ACCTCCAACCC--CATGTGAATTCGACT--GTTGCTTCGGGGGCGACCCTGCCGT----TCGACGGCG----AGCGCTCCCGGGGA--TCATTAAACTC---TGCATCATTG---CGTCGGAGTATCAATCAAAATTGAACAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCGTGGTATTCCGCGGGGCATGCCTGTTCGAGCGTCATTTCACCACTCAAGCCTGGCTTGGTATTGGG----CGCCGCGTCTC------GACGCGCGCCTCAAAGTCTC-CCGGCTGAGCCGCCCGTCTCCCAGCGTTGTA-ATATATGA-----TCGC-TTCGGAG-TGCGGGTGGCCGCGGCCGTTAAACTCTTTATCAAAGGTTGACC????????????????? Zasmidium_cellare_CBS146.36 ??????GGGATCATTACTGAGTGAGGGT-TCCGGCCCG-ACCTCCAACCCTTTTTGTGAACCACCTC--GTTGCCTCGGGGGCGACCCTGCCGTGCTCTCGGGTGCGGTG-GGGGCTCCCGGCGGCCCCTTCAAACCC---TGCGTAACTGAGCCGTCGGAGTTTAAAC--AAATCAATCAAAACTTTCAACAACGGATCTCTTGGTTCGGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTACGCCAATCGAGCCTGGCTCGGTGTTGGG----CGTCGCGGGCTGCGCAGCCCGCGCGCCTTAAAGTCTCACCGGCTGAGCGACCCTCCTCTAAGCGTTGTG-GAAACTAT-----TCGC-GGCGAGG--GCGGGCGG-CGCGGCCGTTAAACACCCCATCAAAGGTTGACCTCGGATCAGGTA????? Zasmidium_cellare_TEA096 TGCGGAGGGATCATTACTGAGCGAGGGT-TCCGGCCCG-ACCTCCAACCCCTTTTGTGAACCACCTC--GTTGCCTCGGGGGCGACCCTGCCGTGCTCTCGGGTGCGGTGCGGGGCTCCCGGCGGCCCCTTCAATCCC---TGCGTAACTGAGCCGTCGGAGTTTAAAC--AAATCAATCAAAACTTTCAACAACGGATCTCTTGGTTCGGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTACGCCAATCGAGCCTGGCTCGGTGTTGGG----CGTCGCGGGCTGCGCAGCCCGCGCGCCTTAAAGTCTCACCGGCTGAGCGACCCTCCTCTAAGCGTTGTG-GAAACTAT-----TCGC-GGCGAGG--GCGGGCGG-CGCGGCCGTTAAATACCCCATCAAAGGTTGACCTCGGATCAGGTAGGGAT Mycosphaerella_punctiformis_CBS113265 ?????AGGGATCATTACTGAGTGAGGGCTTCCGGCCCG-ACCTCCAACCC--TTTGTGAA-CACATCTTGTTGCTTCGGGGGCGACCCTGCCGT----------TCGCGGCATTCCCCCCGGAGG-TCATCAAAACAC---TGCATTCTTA---CGTCGGAGTAAAAAGT-TAATTTAATAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTTCACCACTCAAGCCTCGCTTGGTATTGGG----CGTCGCGAGTC-----TCTCGCGCGCCTCAAAGTCT--CCGGCTGTGCGGTTCGTCTCCCAGCGTTGTG-GCAACTAT----TTCGC-AGTGGAG-TTCGAGTCGTCGTGGCCGTTAAATCTTT---CAAAGGTTGACCTCGGATCAGG??????? 'Stigmina platani STE-U4299' ?????AGGGATCATTACTGAGTGAGGGC-TCACGCCCG-ACCTCCAACCC--TTTGTGAA-CACATCTCGTTGCTTCAGAGGCGACCCGGCCGG--------TGCCG----GGCGCCCCCGGAGG-TCTTCTCAACAC---TGCATTTTTG---CGTCCGAGTCTGATAC-AAATCAAACAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTTCACCACTCAAGCCTGGCTTGGTATTGGG----CGTCGCGGCTC------CCCGCGCGCCTTAAAGTCC--CCGGCTGAGCTGTCCGTCTCCAAGCGTTGTG-GCATTTCAACTATTCGC-TTTGGAG-CGCGGGCGGCCGCGGCCGTTAAATCCTCACACAA-GGTTGACCTCGGATCAGGTAGGGAT Stigmina_platani T-CGGAGGGATCATTAGTGAGTGAGGGC-TCACGCCCGAACCTCCAACCC--TTTG-GAAACACATCT-GGTGCTTCGGGGGCGACCCGGCCGG--------TGCCG----GGCGCCCCCGGAGG-TCTTCTCAACAC---TGCATTTTTG---CGTCCGAGTCTGATAC-AAATCAAACAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTTCACCACTCAAGCCTGGCTTGGTATTGGG----CGTCGCGGCTC------CCCGCGCGCCTTAAAGTCC--CCGGCTGAGCTGTCCGTCTCCAAGCGTTGTG-GCATTCAA-CTATTCGC-TTTGGAG-CACGGGCGGCCGCGGCCGTTAAATCCTCGCACAA--GCTTATCAAGAGCGAAGGAG???? Xenosonderhenia_syzygii_CPC19790 TGCGGAGGGATCATTACCGAGTGAGGGC-TCACGCCCG-ACCTCCAACCC--CATGTGAACCGCGACC-GTTGCTTCGGGGGCGACCCTGCCGT---TCCGACGGCG----AGCGCCCCCGGAGG--CCATCGAACTC---TGCATCTCTG---CGTCGGAGTATCAATC-AAATTGAACAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCGTGGTATTCCGCGGGGCATGCCTGTTCGAGCGTCATTTCACCACTCAAGCCTGGCTTGGTATTGGG----CGCCGCGTCTC------GACGCGCGCCTCAAAGTCTC-CCGGCTGAGCTGTCCGTCTCCCAGCGTTGTG-ACACATTA-----TCGC-TCCGGAG-TGCGGGTGGTCGCGGCCGTTAAATTCTTAATCAAAGGTTGACCTCGGATCAGGTAGGGAT Neoceratosperma_eucalypti_CPC23465 TGCGGAGGGATCATTACTGAGTGAGGACCCCGCGTCCG-ACCTCCAACCC--TCTGTGAACCAACACT-GTTGCTTCGGGGGCTCCCCTGCCGT----TCGGGCTCG-----GGGCCCCCGGAGG-AAATCAAAACGC---TGCATCTGTG---CGTCGGAGTATCAATC-AAATTGAACAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCGTGGTATTCCGCGGGGCATGCCTGTTCGAGCGTCATTTCACCACTCAAGCCTAGCTTGGTATTGGG----CGTCGCGGCTC--------CGCGCGCCTCAAAGTCT--CCGGCTGAGCTGTCCGTCTCCTAGCGTTGTG-ACACACGA-----TCGC--TCCGAG-TTCGAACAGCCGCGGCCGTTAAA--CTTCATCAAAGGTTGACCTCGGATCAGGTAGGGAT Xenostigmina_zilleri_CBS115686 ?????AAGGATCATTACCGTGGGGATTCGTCCCCATTG-AGATAGCACCC--TTTGTTCATGAGTACC-CTTGTTTCCTCGGCGGGCCTGCC---------------------CGCCAGTAGGACAATATCAAAACCCTTTTGCAGTAGTAGTAACTTCAGTTAATAAAC-AAAT--ATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTCGGTATTCCGTTGGGCATGCCTGTTCGAGCGTCATTTAAACCTTCAAGCTATGCTTGGTGTTGGGTGTTTGTCCCGCCTCAGCGCGTGGACTCGCCTCAAATCCA-------TTGGCAGCCGGTATGTTGGCTTCGTGCGCAGCACA-----TTGCAAGCGGAA-CTCAGCAGACCTCCTCCCACAAGCCCTTTTTTTA--CTTGACCTCGGATCAGGTAGG??? Xenostigmina_zilleri_CBS124108 TGCGGAAGGATCATTACCGTGGGGATTCGTCCCCATTG-AGATAGCACCC--TTTGTTCATGAGTACC-CTTGTTTCCTCGGCGGGCCTGCC---------------------CGCCAGTAGGACAATATCAAAACCCTTTTGCAGTAGTAGTAACTTCAGTTAATAAAC-AAAT--ATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTCGGTATTCCGTTGGGCATGCCTGTTCGAGCGTCATTTAAACCTTCAAGCTATGCTTGGTGTTGGGTGTTTGTCCCGCCTCAGCGCGTGGACTCGCCTCAAATCCA-------TTGGCAGCCGGTATGTTGGCTTCGTGCGCAGCACA-----TTGCAAGCGGAA-CTCAGCAGACCTCCTCCCACAAGCCCTTTTTTTA--CTTGACCTCGGATCAGGTAGGGAT ; END; BEGIN TAXA; TITLE Taxa2; DIMENSIONS NTAX=10; TAXLABELS Pseudocercospora_vitis_CBS132012 Stigmina_platani_CBS110755 Zasmidium_cellare_CBS146.36 Mycosphaerella_punctiformis_CBS113265 Xenomycosphaerella_elongata_CBS120735 Dictyosporina_ferruginea_COAD2272 Xenosonderhenia_syzygii_CPC19790 Neoceratosperma_eucalypti_CPC23465 Xenostigmina_zilleri_CBS115686 Xenostigmina_zilleri_CBS124108 ; END; BEGIN CHARACTERS; TITLE Character_Matrix2; LINK TAXA = Taxa2; DIMENSIONS NCHAR=830; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Pseudocercospora_vitis_CBS132012 AAGCGGCAACAGCTCAAATTTGAAATCTGGCGC-----AAGCCCGAGTTGTAATTTGTAGAGGATGCTTCTGGGTAGCGGCCGGTCTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTATGTGACTGGCTTGCACCCTCCACGT--AGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCCCGCAACCAGACTTTGCGGCAG-TGTTCCGCCGGTCTTCTGACCGGTCTACTCGCTGTCGTG-AGGCCATCATCGTCTGGGACCGCTGGAT-AAGACCTTAGGAATGTAGCTCCCTTCGGGGAGTGTTATA--GCCTCTGGTGATGCAGCGCGTCTCGGGCGAGGTCCGCGCTTCGGCAAGGATGATGGCGTAATGGTTGTCGGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTCGGGTGTCAAACCCCTACGCGTAATGAAAGTGAACGGAGGTGGGAA--CTTTTTG-TGCACCATCGACCGATCCTGATGTCCTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA???????????????????????????????????????????????????????????????????????? Stigmina_platani_CBS110755 AAGCGGCAACAGCTCAAATTTGAAATCTGGCGC-----AAGCCCGAGTTGTAATTTGTAGAGGATGCTTCTGGGTAGCGGCCGGTCTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTATGTGACTGGCTTGCACCCTCCACGT--AGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCCCGCAACCAGACTTTGCGGCAG-TGTTCGGCTGGTCTTCTGACCGGTTTACTCGCTGCCGTG-AGGCCATCATCGTCTGGGACCGCTGGAT-AAGACCTAGGGAATGTGGCTCCCCTCGGGGAGTGTTATA--GCCTCTGGTGATGCAGCGCGTCTCGGGCGAGGTCCGCGCTTCGGCAAGGATGATGGCGTAATGGTTGTCGGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTCGGGTGTCAAACCCCTACGCGTAATGAAAGTGAACGGAGGTGGGAA--CTTTTTG-TGCACCATCGACCGATCCTGATGTCCTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACCAT Zasmidium_cellare_CBS146.36 AAGCGGCAACAGCTCAAATTTGAAACCTGGCGCTC---GCGTCCGGATTGTAATTTGCAGAGGATGCTTCTGGGCAGCGGCCGGTCTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTATGCGACCGGCGCGCACCCTCCACGT--AGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCCGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTCCCACCAGACTCCGCGGCGG-TGTTCCGCCGGCCTTTTGGCCGGTCCACTCGCCGCCGCG-GGGCCAGCATCGTCTGGGGCCGCCGGAT-AAGACCGTCAGAATGTAGCTCATT-----GAGTGTTATA--GCTGGCGGTGATGCGGCGCGCCCCGGGCGAGGTCCGCGCTTCGGCAAGGATGCTGGCGTAATGGTGGGCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTCGGGTGTCAAACCCCTACGCGTAATGAAAGTGAACGGAGGTGGGAG---CTTCGG-CGCACCATCGACCGATCCTGATGTCCTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTSTGACGTGCAAATCGATCGTCAAATTTGGGCATAGGGGCGAAAGACTAATCGAACCAT Mycosphaerella_punctiformis_CBS113265 AAGCGGCAACAGCTCAAATTTGAAATCTGGCGC-----AAGCCCGAGTTGTAATTTGTAGAGGATGCTTCTAGGTAGCGACCGGTCTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTATGTGACTGGCCCGCACCTTCTACGT--AGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTCACAACCAGACTTCTAGGCAG-TGTTCCGCCGGTCTTTTGACCGGTCTACTCTCTGTCTCG-AGGCCAACATCATCTGGGACCGCCGGAT-AAGACCTTAGGAATGTAGCTCCCCTCGGGGAGTGTTATA--GCCTCTGGTGATGCGGCGCGTCTCGGGTGAGGTCCGCGCTTCGGCAAGGATGTTGGCGTAATGGTTGTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTCGGGTGTCAAACCCCTACGCGTAATGAAAGTGAACGGAGGTGGGAA--GCGTAAGCTGCACCATCGACCGATCCTGATGTCCTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACCAT Xenomycosphaerella_elongata_CBS120735 AAGCGGCAACAGCTCAAATTTGAAATCTGGCGC-----AAGCCCGAGTTGTAATTTGTAGAGGATGCTTCTGGGCAGCGGCCTGTCTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTATGTGACCGGCGCGCACCCTCCACGT--AGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTCACAACCAGACTTCGCGGCGG-TGTTCCGCCGGTCTTTTGACCGGTCCACTCGCCGCCGCG-AGGCCAACATCATCTGGGGCCGCCGGAT-AAGACCGTGGGAATGTAGCTCCCCTCGGGGAGTGTTATA--GCTCACGGTGATGCGGCGAGCCTCGGGTGAGGTCCGCACTTCGGTAAGGATGTTGGCGTAATGGTTGTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTCGGGTGTCAAACCCCTACGCGTAATGAAAGTGAACGGAGGTGGGAA---CGCAAG-TGCACCATCGACCGATCCTGATGTCCTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA???????????????????????????????????????????????????????????????????????? Dictyosporina_ferruginea_COAD2272 ??????????????????TTTGAAATCTGGCGC-----AAGCCCGAGTTGTAATTTGTAGAGGATGCTTCTGGCCAGCGGCCGTTCTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTATGTGACCGGCGCGCAGCCTCCACGT--AGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCCCGCAACCAGACTTCGCGGCGG-TGTTCCGCTGGTCTTCTGACCAGTCCACTCTCCGCCGCG-AGGCCAACATCATCTGGGACCGCCGGAT-AAGACCTCGGGAATGTAGCTTGCTCCGGTAAGTGTTATA--GCCCGCGGTGATGCGGCGAGTCCCGGGTGAGGTCCGCACTTCGGTAAGGATGTTGGCGTAATGGTTGTCGGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTCGGGTGTCAAACCCCTACGCGGAATGAAAGTGAACGGAGGTGGGAA---CGCAAG-TGCACCATCGACCGATCCTGATGTCCTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGT??????????????????????????? Xenosonderhenia_syzygii_CPC19790 AAGCGGCAACAGCTCAAATTTGAAATCTGGCGC-----AAGCCCGAGTTGTAATTTGTAGAGGATGCTTCTGGGCAGCGGCCGTTCTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTATGTGAACGGCGCGCACCCTCCACGT--AGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTCACAACCAGACTTCGCAGCGG-TGTTCCGCCGGTCCTCTGACCGGTCCACTCGCCGCCGCG-AGGCCAACATCATCTGGGGCCGCCGGAT-AAGACCGTAGGAATGTAGCTCCCCTCGGGGAGTGTTATA--GCCTGCGGTGATGCGGCGAGCCTCGGGTGAGGTCCGCACTTCGGTAAGGATGTTGGCGTAATGGTTGTTAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTCGGGTGTCAAACCCCTACGCGTAATGAAAGTGAACGGAGGTGGGAA---CGCAAG-TGCACCATCGACCGATCCTGATGTCCTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACCAT Neoceratosperma_eucalypti_CPC23465 AAGCGGCAACAGCTCAAATTTGAAATCTGGCGC-----AAGCCCGAATTGTAATTTGTAGAGGATGCTTCTGGGCAGCGGCCGTTCTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTATGTGACCGGCGCGCACCCTCCACGT--AGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTACAACCAGACTTCGTAGCGG-TGTTCCGCCGGTCTTCTGACCGGTTCATTCGCCGCCGCG-AGGCCAGCATCGTCTGGGGCCGCTGGAT-AAGACCGTTGGAATGTAGCTCCTCTCGGGGAGTGTTATA--GCCAGCGGTGATGCAGCGAGCTCCGGGCGAGGTCCGCACTTCGGTAAGGATGCTGGCGTAATGGTTGTCAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTCGGGTGTCAAACCCCTACGCGTAATGAAAGTGAACGGAGGTGGGAA---CTTTTG-TGCACCATCGACCGATCCTGATGTCCTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACCAT Xenostigmina_zilleri_CBS115686 AAGCGGCAATAGCTCAAATTTGAAATCTGGCCCTTTCAGGGTCCGAGTTGTAATTTGCAGAGGGCGCTTTGGAGTCGGCAGCAGCCTAAGTTCCTTGGAACAGGTCATCATAGAGGGTGAGAATCCCGTATGTGGCT-GCTTGCCTTCGCCGTGTAAAGCCCCTTCGATGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTCAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAGCCAGACGTGCCCGTAGTTGCTCATCTGGGGTTCTCCCCAGTGCACTCTTCTATGGGCAGGCCAGCATCAGTCCGGGCGGTTGGAGAAAGACCTGTGTCACGTAGCTCTCTTCGGGGAGTGTTATAGGGCAGGTGG-AATGCAACCAGCCTGGACTGAGGTCCGCGCATCTGCTAGGATGCTGGCGTAATGGCTGTAAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAGCCCGAGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCCTCGGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGCATAGGGGCGAAAGACTAATCGAACTAT Xenostigmina_zilleri_CBS124108 AAGCGGCAATAGCTCAAATTTGAAATCTGGCCCTTTCAGGGTCCGAGTTGTAATTTGCAGAGGGCGCTTTGGAGTCGGCAGCAGCCTAAGTTCCTTGGAACAGGTCATCATAGAGGGTGAGAATCCCGTATGTGGCT-GCTTGCCTTCGCCGTGTAAAGCCCCTTCGATGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTCAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAGCCAGACGTGCCCGTAGTTGCTCATCTGGGGTTCTCCCCAGTGCACTCTTCTATGGGCAGGCCAGCATCAGTCCGGGCGGTTGGAGAAAGACCTGTGTCACGTAGCTCTCTTCGGGGAGTGTTATAGGGCAGGTGG-AATGCAACCAGCCTGGACTGAGGTCCGCGCATCTGCTAGGATGCTGGCGTAATGGCTGTAAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAGCCCGAGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCCTCGGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGCATAGGGGCGAAAGACTAATCGAACTAT ; END; BEGIN TREES; Title 'Trees from "LSU_tree.nex.con.tre"'; ID 015cbd3564565; LINK Taxa = Taxa2; TRANSLATE [0] 1 Pseudocercospora_vitis_CBS132012, [1] 2 Stigmina_platani_CBS110755, [2] 3 Zasmidium_cellare_CBS146.36, [3] 4 Mycosphaerella_punctiformis_CBS113265, [4] 5 Xenomycosphaerella_elongata_CBS120735, [5] 6 Dictyosporina_ferruginea_COAD2272, [6] 7 Xenosonderhenia_syzygii_CPC19790, [7] 8 Neoceratosperma_eucalypti_CPC23465, [8] 9 Xenostigmina_zilleri_CBS115686, [9] 10 Xenostigmina_zilleri_CBS124108; TREE con_50_majrule = ((9:0.0008318799,10:0.0008180735):0.12916275,(4:0.01476179,(1:0.001737701,2:0.009655231):0.02318513,(6:0.0281283,(5:0.007694284,7:0.006793609,(3:0.05506226,8:0.00987626):0.02085875):0.005665386):0.02039566):0.12916275); END; BEGIN TREES; Title 'Trees from "ITS_tree.nex.con.tre"'; ID 015cbd2bc2cf1; LINK Taxa = Taxa; TRANSLATE [0] 1 Pseudocercospora_vitis_CBS132012, [1] 2 Dictyosporina_ferruginea_COAD2272, [2] 3 Xenomycosphaerella_yunnanensis_CBS119975, [3] 4 Xenomycosphaerella_elongata_CBS120735, [4] 5 Zasmidium_cellare_CBS146.36, [5] 6 Zasmidium_cellare_TEA096, [6] 7 Mycosphaerella_punctiformis_CBS113265, [7] 8 'Stigmina platani STE-U4299', [8] 9 Stigmina_platani, [9] 10 Xenosonderhenia_syzygii_CPC19790, [10] 11 Neoceratosperma_eucalypti_CPC23465, [11] 12 Xenostigmina_zilleri_CBS115686, [12] 13 Xenostigmina_zilleri_CBS124108; TREE con_50_majrule = ((12:0.001575807,13:0.001564906):0.3575365,(7:0.1009864,(5:0.003541123,6:0.007960551):0.1754311,(1:0.0186298,(8:0.004814873,9:0.04693874):0.06736111):0.02481532,((3:0.04483606,11:0.0561782):0.02801847,(10:0.01604411,(2:0.09356719,4:0.05400061):0.01233146):0.04328945):0.03338384):0.3575365); END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED (CHARACTERS = Character_Matrix) = unord: 1 - 527; TYPESET * UNTITLED (CHARACTERS = Character_Matrix2) = unord: 1 - 830; END; BEGIN CODONS; CODESET * UNTITLED (CHARACTERS = Character_Matrix) = universal: 1 - 527; CODESET * UNTITLED (CHARACTERS = Character_Matrix2) = universal: 1 - 830; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED (CHARACTERS = Character_Matrix) = 'Jukes-Cantor': 1 - 527; ProbModelSet * UNTITLED (CHARACTERS = Character_Matrix2) = 'Jukes-Cantor': 1 - 830; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1497823535692; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 4391025657736618094; setID 1 7525736602538861985; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 1576016026560888724; mqVersion 320; checksumv 0 3 2741864622 null getNumChars 527 numChars 527 getNumTaxa 13 numTaxa 13 short true bits 15 states 15 sumSquaresStatesOnly 129125.0 sumSquares 129125.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 2; mqVersion; setID 1 8132036111841007564; mqVersion 320; checksumv 1 3 2242520625 null getNumChars 830 numChars 830 getNumTaxa 10 numTaxa 10 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 160955.0 sumSquares -9.2233720368546232E18 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 2; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 292; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1362 640; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #4391025657736618094 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTaxa #4391025657736618094; setTreeBlock 1; setTreeBlockID 015cbd2bc2cf1; toggleUseWeights off; endTell; setAssignedID 1362.1497823182956.1101868161172421370; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1070 568; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.reroot; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; makeTreeWindow #7525736602538861985 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTaxa #7525736602538861985; setTreeBlock 1; setTreeBlockID 015cbd3564565; toggleUseWeights off; endTell; setAssignedID 1937.1497823443165.304824711844993629; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1070 568; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.reroot; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #1576016026560888724 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1070 568; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; showDataWindow #8132036111841007564 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 172; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1070 568; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;