#NEXUS [written Tue Aug 01 12:20:06 CEST 2017 by Mesquite version 3.2 (build 801) at RIE-PC-N-13-034/172.20.55.9] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=68; TAXLABELS Myotis_lucifugus_PSG1 Myotis_lucifugus_PSG2 Myotis_lucifugus_PSG3 Myotis_lucifugus_PSG4 Myotis_lucifugus_PSG5 Myotis_lucifugus_PSG6 Myotis_lucifugus_PSG7 Myotis_lucifugus_PSG8 Myotis_lucifugus_PSG9 Myotis_lucifugus_PSG10 Myotis_lucifugus_PSG11 Myotis_lucifugus_PSG12 Myotis_lucifugus_PSG13 Myotis_lucifugus_PSG14 Myotis_lucifugus_PSG15 Myotis_lucifugus_PSG16 Myotis_lucifugus_PSG17 Myotis_lucifugus_PSG_18 Myotis_lucifugus_PSG19 Myotis_lucifugus_PSG20 Myotis_lucifugus_PSG21 Myotis_lucifugus_PSG22 Myotis_lucifugus_PSG23 Myotis_lucifugus_PSG24 Myotis_lucifugus_PSG25 Myotis_lucifugus_PSG26 Myotis_lucifugus_PSG27 Myotis_lucifugus_PSG28 Myotis_lucifugus_PSG29 Myotis_lucifugus_PSG30 Myotis_lucifugus_PSG31 Myotis_lucifugus_PSG32 Myotis_lucifugus_PSG33 Myotis_lucifugus_PSG34 Myotis_lucifugus_PSG35 Myotis_lucifugus_PSG36 Myotis_lucifugus_PSG37 Myotis_lucifugus_PSG38 Myotis_lucifugus_PSG39 Myotis_lucifugus_PSG40 Myotis_lucifugus_PSG41 Myotis_lucifugus_PSG42 Myotis_lucifugus_CC1L1 Myotis_lucifugus_CC1L2 Myotis_lucifugus_CC1L3 Myotis_lucifugus_CC3L1 Myotis_lucifugus_CC3L2 Myotis_lucifugus_CC3L3 Eidolon_helvum_269716 Eidolon_helvum_255325 Eidolon_helvum_74552 Eidolon_helvum_357734 Megaderma_lyra_119235 Pteropus_alecto_796 Pteropus_alecto_19407 Pteropus_alecto_36881 Pteropus_alecto_36885 Pteropus_alecto_3909 Pteropus_vampyrus_280890 Pteropus_vampyrus_219933_1 Pteropus_vampyrus_219933_2 Pteropus_vampyrus_219933_3 Pteropus_vampyrus_348119 Rousettus_aegyptiacus_262_1 Rousettus_aegyptiacus_888_3 Rousettus_aegyptiacus_888_4 Rousettus_aegyptiacus_1181 Rousettus_aegyptiacus_1354_1 ; END; BEGIN CHARACTERS; TITLE 'Matrix in file "megabats.nexus"'; DIMENSIONS NCHAR=123; FORMAT DATATYPE = Protein GAP = - MISSING = ?; MATRIX Myotis_lucifugus_PSG1 VFLLTYWIPPTTAQFAI--VSTSAFEGQDVILRLRNMPPVVRKIIWYRGMEMKNHNFIASRAWYSSKYRTGQVEIYSDRMEMNLEGSLIIRNVTVRDQGLYRVEAVPPKSGSVRAFGWLSVY- Myotis_lucifugus_PSG2 VFLLTYWIPPTTAGFAI--VSTIAFEGEDVILSLRNMPPDVIKIIWYREIEMKCHNFIASRAWYSSEYLTGPK--YSGREEINLDGSLIIRNVTVRDQGVYIVVAVLPMSRRVRGFGWLSVY- Myotis_lucifugus_PSG3 VFLLTFWIPPTTARFGI--VSTIALEGQDVILRTQNRPPGVTGFVWYRGKEMNYYTLIASLALHSRRSLRGPE--YRGRETVNLDGSLTIRKVTLWDLGIYTVVAVLQNFRK----------- Myotis_lucifugus_PSG4 IFLLSLWIPPTTAQFAI--LSTIALEGQDVILRLRNPPPDVTGFIWYRGREMKYHNFIGSRAWYSSEYLTVPK--YSGREEINLEGSLIIRNVTVWDLGIYVLVAVLPNSRREIGFGQLIVF- Myotis_lucifugus_PSG5 VFLLTLWIPPTTAQFDI--VSTIALEGQDVILRLRNMPPDVTGFIWYKGMEMNYHKFIGSRAWYSSEYLTGPE--YSGREEINLDGSLIIRNVTRRDQDIYLVVAILPKSQREIGTGVLRVY- Myotis_lucifugus_PSG6 IFLLTLWIPPTTAQFDI--VSTIALEGQDVILRLRNTPPDDTGFIWYRGIEMKYHKFIGSLVSYSSEYLTGPK--YSGREEITIGGHLIIKNVTVWDRGNYTVITVLPKSRSEIGFGRLRVS- Myotis_lucifugus_PSG7 VFLLTLWIPPTTARFAV--VSTSALEGQDVILHTHNRPPNCAGFIWYRGDKTDYNHFIASLTLHSRRSVRGPK--YSGQETVNLDGFLTIRKVTLKDTGTYTVIAVLENSLREIGCGQLDVY- Myotis_lucifugus_PSG8 VFLLTLWITPTTARFAI--ASTFAFEGHDVILHLRNTPPDVTGFIWYRGEEMNYHNFIGSRPWYSSEYLTGPK--YSGREEINLDGTLIIKNVTARDEDTYVVVAVLANSQRVRGSGWLSIY- Myotis_lucifugus_PSG9 VLLFTFWSRPTAAQLAI--VSTNAAEGEDVILRIRNNPPDASGYIWYRGEGAKASRYIALFSLEANDIGRGPE--YTGRETINKEGCLLIKKVTLRDTGIYTIVVYLHNSKKEIGFGRLNVY- Myotis_lucifugus_PSG10 VALLNFWSLPTTAQLAI--VSTNATEGQDVILRILNMPPHVRGIMWYRGEEPNYEHNIARLGM-LPGHRAGPE--HSGREQINFDGSLLIKRVTLQDTGNYTIVVYLRNSKKEIGFGQLNVY- Myotis_lucifugus_PSG11 VSLLNFWSLPTTAQLAI--VSTNAAEGKDVTLRIRNMPPDYIGFVWYRGEGANYRHTIASLSFRVRTSRTGRA--YSGREQINFDGSLQIKRVTLKDTGIYTIVVYLQDYKKEIGFGRLNVY- Myotis_lucifugus_PSG12 VSLLNFWSLPTAAQLTF--VSTKTTEGKNMILLIRNMPLNARGFMGYRGEGANYKHKIARLGL-FPGHRTGPA--YSGQEQINFDGSLQLQRLTQNDTGIYIVLLYIPSILKEIGFERLNVY- Myotis_lucifugus_PSG13 VSLLNFWSLPTTSQLSI--VST---EGQDVTLRICNMPPNAQGYMWYRGEGANFKHKIAGLGL-FPGHRTGPA--HSGREYINFDGFLVIKRVTLEDTGVYTIVVFLPEHKKEIGFGGLNVY- Myotis_lucifugus_PSG14 VSLLNFWSLPTTAQLAI--VSTNAAEGQDVTLRIRNMPPNAKGFTWYRGEGANIYHNLATLGTYLRFYTTGPA--HSGREQINYDGSLQLKQVTQKDTGIYTVVVYLPGCIKEIGFGQLNVY- Myotis_lucifugus_PSG15 VSLLNFWSLPTTAQLAI--VSTNAAEGKDVILSIRNMPPDVSSFMWYRGEGEKYEHNIARLGM-LRRHRTGPA--YSGRERINFDGSLLIKRVTQKDTGIYTVVVYLPDSIKEIGFGRLNVY- Myotis_lucifugus_PSG16 VSLLNFWSLPTTAQLAI--VSTNAAEGKNVILHIRNMPPDHIGIVWYRGEGANYRHTIASHAFHRRTYSIGRA--NSGREEINFDGSLLIKRVTLKDTGIYTVVVYLQDYIKEIGFGRLNVY- Myotis_lucifugus_PSG17 VSLLNFWSLPTTAQLAI--VSTNATEGKDVILRIRNMPPDVRGYMWYRGEEANYKHNIARLGI-LPGHRAGPA--HSGREQINFDGSLLIKNVTLKDTGIYTVVVYLQGSKKEIGFGRLNVY- Myotis_lucifugus_PSG_18 VSLLNFWSLPTTAQLAI--VSTNAAEGKDVILRIHNMPPDNIGFVWYRGEGANYRHTIASLAFHIRTYSTGRA--YSGREQINFDGSLLIKRVTLKDTGIYTVVVYLRDYKKEIGFGRLNVY- Myotis_lucifugus_PSG19 VSLLNFWSLPTTAQLAI--VSTNAAEGQDVILRIRNKPPDATGFMWYRGEGAIYEHNIANLGT-WRTGRTGPA--SSGREIINYDGSLQLKRVTLKDTGIYTVVVYLPHYIKEIGFGRLNVY- Myotis_lucifugus_PSG20 VFLLTFWIMPTTAQFAI--FSTVAFEGQDVILHLRNTPPNVTRFIWYRGIEMKYLNFIGSREWNYSEYLKGPE--YTGQEEINLEGSLIIRNVTVRDQGVYIVVAVLPKSPNVRRFGRLRVY- Myotis_lucifugus_PSG21 VFLLTFWIPPTTARFAI--VSTSAYEGQDVILCLCNTPPNVTGFIWYKGMDMKFHNFIGSRPRNYSEYLTGPE--YSGREEIHLEGPLIIRNVTVRDQGLYIVVAVLPESGRIKGFGWLRVY- Myotis_lucifugus_PSG22 FLLLTLWIPPTTAQFAI--VSTIALEGQDVILHLRNMPTNVTGFIWYRGIEMKYHNFIGSHEWYSSEYVTGPE--YSGREEINLEGSLIIRNVTVWDLGIYVIVAVLSNSRREIGFGQLNVF- Myotis_lucifugus_PSG23 VFLLTFWIMPTTAQFAI--DSTVAFEGQDGILRLSNKPPNVTGIIWYRGIEMKVLNFIGSLAWDTSEILTGPE--YSGREEINLEGSLIIRNVTVRDEGIYVVEAVLPNSPRVRGFGWLSVY- Myotis_lucifugus_PSG24 VFLLTLWIPPTTAEFGI--VWKFALEGQDVILRLRNTPPDVIGFMWYRGMEMTYHNFIGSLAWYPREYLTGPE--YSGREEINREGSLIIRNVTVRDQDIYGVVAVLPKSRGVTGLGWLSVY- Myotis_lucifugus_PSG25 VFLLTLWIPPTTARFEM--VMTSALEGQDVILRTQNRPPNVTGFIWYRGFVMIYSNLIAYVSWSSGQYIKGPK--YTGRETIQFNGSLIIRNVTMWDLGLYIGVAVHNHSKTEIGSAFLIVY- Myotis_lucifugus_PSG26 VFLLTLWIPPTTAQFSI--VSINAAEGQDVILHTRNRPPSCAGFIWYRGEKRDYYHFIASVAWRVRRYRTGPE--YSGRETANLEGSLIIRKVTLKDTGTYTVIAVLQNSLREIGCGQLNVY- Myotis_lucifugus_PSG27 VFLLTLWIPPTTAQFEI--VMTSALEGQDVILRTQNRPPNVTGFIWYRGFTRNYTNLIAYVSWSPRIYITGPA--YSGREIVTFDGNLIIRNVTVWDLGIYMAVAVLHNSKTVEGLGWLNVY- Myotis_lucifugus_PSG28 IFLLTFWIPPTTARLGI--VLTSALEGQDVILRTQNRPQGVTGFVWYRGIEMNYYTLIASLTLHLRRSLRGPE--YSGLETVNLDGSLTIRKVTVWDLGMHIVVAVLQNLQKEIGFGQLNVY- Myotis_lucifugus_PSG29 VSLLNFWSLPTAAQLAI--VSTNAAKGQDVTLRIRNMPPNPKGFTWYRGEGANYYHELASLGTVFGIYITGYA--NSGREQINYDGSLQLKQVTQKDTGIYTVVVYLPGSIKEIGFGRLNVY- Myotis_lucifugus_PSG30 VSLLNFWSLPTAAQLGI--VSTNAAEGQDVTLRIHNMPPNTQGLTWYRGEGANYYHNLATVRKDMRNFITGYA--NSGREQINYDGSLQLKQVTQKDTGIYTVVVYLPGNIKEIGFGRLNVY- Myotis_lucifugus_PSG31 VSLLNFWSLPTTAQLSI--VSTNAAEGQDVTLRICNMPHNAQGYMWYRGEGANFTHKIAGLGL-FPGHRTGPA--HSGREYINFDGSLVIKRVTLEDTGIYTVVVFLPEHKKEIGFGPLNVY- Myotis_lucifugus_PSG32 VSLLNFWSLPTTAEFVV--LSKNAVEGRTVMLRTRDVPPGVTAFYWYKGRETYNKNMIGRLTKLIGRQRTGPA--YSGREYIYFDGTLVINTVTQKDTGFYTLVVNLPNKKQEIRYARLNVY- Myotis_lucifugus_PSG33 ISLLNFWSLPTTAQLAV--VSTNAAEGQDVILHIRNMPPEFTVFVWYRGEGENYKHSIACLGI-FLRHRTGPA--HSCREKINFDGSLLIKRVTLKYTGIYTIAVYLPGYIKEIGFGRLNVY- Myotis_lucifugus_PSG34 VSLLNFCCLPTTAQLAV--VSTNAAEGQDVILHIRNMPPDVRGFVWYRGEGENYKHHIAFLGM-FLSYRTGPA--YSGREQVNFDGSLQIKGVIQKDTGNYTLVAYLPDYIKEIGFGRLNVY- Myotis_lucifugus_PSG35 VFLLTIWIPPTTARFDM--VMTSAVEGQDVILCTQNRPPNVTGFIWYRGFVMNYTNLIAYVSWSSGQYIKGPK--YTRRETVKFNGSLIIRNVTMWDLGFYIRVAVLNNSKTEKGFGLLIVY- Myotis_lucifugus_PSG36 VSLLNFWSLPTAAQLAF--VSTKTTEGKDVILLVRNMPLNARGFMGYRGEGANYKHKIARLGL-FPGHRTGPA--YRGQEQINFDGSLQLQRLTQNDTGIYIVLLYIPSILKEIGFGRLNVY- Myotis_lucifugus_PSG37 VFLLTSWIPPTTALFDP--EFNFALEGKDVILRLRNTTPDVTGFIWYRGMEMEYPNFIGSLARDTSEYLTGPE--YSGREEINLDGSLIIRNVTARDENIYSVVAVFPNSRRVRDFRWLGVS- Myotis_lucifugus_PSG38 VFLLTFWIPPTTARFGI--VSTIALEGQDVILHTQNRPPGVTGFVWYRGIEMNYYTLIASLTLHSRQSLRGSK--YSGRETINLDRFLTIRKVTLWDIGTYTVVAVLQNFRKEYGVGRLIVY- Myotis_lucifugus_PSG39 VFLLTFWIMPTTAQFAI--FSTGAYEGQDVILHLRNKPPHVTGIIWYRGIEMKVHNFIGSLAWDTSEFLTGPG--YSGREEINLEGSLIIRNVTVRDQGVYVVVAILPMKRSETGLGWLSVY- Myotis_lucifugus_PSG40 ISLLTFWSPPTTAQLAI--VPTNAAEGKDVLLRIRNKPPD-AGFLWYRGEGARSQRNIASIVVDLRVHALGPA--YSGREKVNSDGSMLLKRVTRKDTGYYTIVARLRDSKKEIGFGQLRVY- Myotis_lucifugus_PSG41 VSLLNFWSLPTAAQLAF--VSTKTTEGKNVILLIRNMPLNARGFMGYRGEGANYKHKIARLGL-FPGHRTGPA--YRGQEQINFDGCLQLQRLTQNDTGIYIVLLYIPSILKEIGFERLNVY- Myotis_lucifugus_PSG42 VSLLNFWSLPTTSQLSI--VSTNAAEGQDVTLRICNMPPNAQGYMWYRGEGANFTHKIASLGL-FPGHRTGPA--HSGREYINFDGFLVIKRVTLEDTGVYTIVVFLPEHKKEIGFGRLNVY- Myotis_lucifugus_CC1L1 ASLLTFWSLPTTAQLTIESVPPNAAEGKDVLLRVHNLPRNLMGYMWYKGEIVGGDLQIVSYVIDTQTTSLGPA--YSHRETIYPNGSLLFQKVTLQDTGYYTLQAVDKDFRSKRVTGQIRVY- Myotis_lucifugus_CC1L2 ASLLTFWSLPTTAQLTIESVPPNAAEGKDVLLRVHNLPGDLGGFIWYKGEIVDSDLQIVSYVIDTQTITLGPA--YSHRETIYPNGSLLFQKVTLQDTGYYTLLAMKKIYTSIQVTGQLRVY- Myotis_lucifugus_CC1L3 ASLLTFWSLPTTAQLTIESVPPNAAEGKDVLLRVHNLPGDLRGYTWYKGEIVDSNHKIVSYVIDTQKITPGPA--YSDRETIYPNGSLLFQNVTLKDTGYYTLLATDKNFQSKPVTGQLHVY- Myotis_lucifugus_CC3L1 ASLLTFWSLPTTAQLTIESVPPNAAEGKDVLLRVHNLPGNLGGYAWYKGEIVDSNHKIVSYVIDTQKITYGPA--YSDREKIYPNGSLLFQNVTRKDTGYYILLAIDKNFQSRPVTGQLHVY- Myotis_lucifugus_CC3L2 ALLLTFWSLPTTAQLIIESVPPNAAEGKDVLLCVHNLPGDLFGYTWYKGEIVDYSRRIISYVVDTQTATLGPA--SSGRETIYPNGSLLFQNVTLKDTGYYTLQATVKDLQSKQVTGQLRVY- Myotis_lucifugus_CC3L3 ASLLTLWSLPTTAQLTIESVPPNAVEGKDVLLCVHNLPGNLGSYTWYTGGKVDYSHQIVSYVIDTQTTTRGPE--SSGRETIYPNGSLLFQKVSLKDTGYYTLLATDKDYESMQVTGQLRVY- Eidolon_helvum_269716 S-LLSFRNPPATTQLTLESLPSNVVEGKDVLLLVHNLPESLGGYAWYKGASVDPNCQIASYVIDSQENNQGPA--YSGRETIYHNGSLLFQKVTLEDTGYYTLLAIKKNFQNEEVTGQFHVY- Eidolon_helvum_255325 S-LLTFWNPPATARLTLESLPANAAKGKNVLLLVHNLPEGLAGYTWYKGRRVNSKHLIASYVIEHQENIPGPA--HSGRETIYPNGSLLFKKVTLEDTGNYTLQAIKKTFQNEEVTGQLRVY- Eidolon_helvum_74552 L-LLTFWNLPTTAQLALESLPSSVAKRKDVLLLVHSLPVDLAGYAWYKGASVDRLRLIASYVTDSQENIPGPT--HSGRETIYPNGPLLFQKATLEDTGYYTPQAIMANFQNEDVTGQLRVY- Eidolon_helvum_357734 S-LLNFWNPPTTAQLTI--VTTSAAEGKDVLLFVYNLPEDLLGYMWYRGEGQDSNSLIASYGINTRVNNWRGC--TQWRD-CKPQWIPADPEGHPGRTGYYTLQAIKKTIGIEEVTGQFCVYI Megaderma_lyra_119235 S-LFTFWNPPTTAQLTIEFVPANAAEGKDVLFLVHNLPEDVVGYAWYKWENVDREHYIASYVIGTQTNTIGSA--YGSRERIYPNGSLLLHNVSLEDTGHYTLQVITTNLRNKEVTGQLRVY- Pteropus_alecto_796 S-LLSFWNPPSTAQITLESLPSNAAEGKDVLLLVHNLPVDIPGYAWFKGAIVDRDRLIALYVIDSQESIPGPA--HSGRETINSNGSLLFQKVTLEDTGYHTLQAIKKNLQNEEVTGQFCVY- Pteropus_alecto_19407 S-LLTSWNPPAIAQLTLESLPSNAAEGKDVLLLVHNLPVDLAAYAWYKGASVDRDRLIASYAIDGQENNPGPG--YSGRETIYPNGSLLIQNVTLKDTGYYTLQIIKKNLLNEEVTGQFCVY- Pteropus_alecto_36881 S-LLTSWNPLATAKLSI--VLTHAAEGKNALLPVRNLPEGLVGYAWYKGRHVNSNHQIASYVIERQENTPGPA--HSGREIIHPNGSLLIHKVTLEDTGYYTLQIIKKTFHNEEVTGRLHVY- Pteropus_alecto_36885 L--RPPAPPPATAQLTLESLPSNAAEGKDVLLLVHNLPVNITGYAWFKGASVDRNRLIASYVIDSQESFPGPA--HSGRETIYPNGSLLIQKVTLEDTGYYTLLAIKKNLLNEEVTAQLHVY- Pteropus_alecto_3909 S-LLTFWNPPATAQLTI--VPTSAPEGKDVLLLAHNLPEDLLGYMWYKEEGQDSNRLIASHGINTRVNNSRAC--TQWRDY-KHNGSLLIQKVTQEGTGYYTLQARKRTIGIEEVTGQLHVY- Pteropus_vampyrus_280890 S-LLTFWNLPTTAQPTLESLPSNAVEGKDVLLLVHNLPVDITGYSWYKGASVDRNRLIASYVIGSQENNPGPA--YSARETIYPNGSLLFQNVTLKDTGYYTLQIIKKNLLNEEVTAQLRVY- Pteropus_vampyrus_219933_1 S-LLSFWNPPSTAQITLESLPSNAAEGKDVLLLVHNLPVNMTGYAWYKGASVDRDRLIASYVIDSQESIPGPA--HSGREIIYPNGSLLIQKVTLEDTGYYTLLAIKKNFLNEEVTAQLHVY- Pteropus_vampyrus_219933_2 S-LLTFWNPPAIAQLTLESLPSNAAEGKDVLLLVHNLPVDLTGYAWYKGASVDPNRLIASYVIESQENNPGPG--YSARETIYPNGSLLFQNVTLKDTGYYTLQIIKKNLLNEEVTGQFCVY- Pteropus_vampyrus_219933_3 S-HVTYRNPPAIAQLTLESLPSSVAEGKDVLLLVHNLPVDITGYAWYKGARVDSNRLIASYAIDNQENNPGPA--HSDRETIYPNGSLLFQNVALEDTGYYTLQAIKKNLLNEEVTAQLCVY- Pteropus_vampyrus_348119 S-LLTSWITLASAQVTI--VLTHAAEEKNVLLTVRNLREGLVVYAWYKGRHGNSNHQIASYVIESQENRSGPA--LSGREIIQPKGSRLIQKVTLEDTGYYTLQAIKKTFHNEEVTGRLHVY- Rousettus_aegyptiacus_262_1 S-LLTFWNPPATAQLAI--VPTSAAEGKDVLLLVHNLPEVLLGYMWYKGEGQNSNRLIASYTI-----ALGPA--NSGRETINHNGSLLFQKVTQENARFYSLQAIKRTIGIEEVTGQFRVCH Rousettus_aegyptiacus_888_3 S-LLTSWNPPTTAQLTLESLPSNAAEGKDVLLLVHNLPEGLVGFSWYKGASVDSNRQIASYVIDSQENVPGPA--YSGRETIYPNGSLLLQNVTLEDTGYYTLQAIKKNLLNEKVIGQLRVY- Rousettus_aegyptiacus_888_4 S-LLTSWYPLTTAQLTLEILPSNAAEGKDVLLLVHNLPVDLVGYSWYKGASVDSNRQIASYVIDNQTNVPGPA--YSGRETIYPNGSLLLQNVTLEDTGYYTLQAIKKNLLNEQVTGQLSVY- Rousettus_aegyptiacus_1181 S-LLTSWYPLTTAQLTLEILPSNAAEGKDVLLLVHNLPVDLVGYSWYKGASVDSNHLIESYVIDSQTNVPGPA--YSGRETIYPNGSLLLQNVTLEDTGYYTLQAIKKNLLNEQVTGQLRVY- Rousettus_aegyptiacus_1354_1 S-LLTFWNPPTTAQLTI--VLTSAAEGKDVLLLVHNLSEGLLGYAWYKGRRVNSSHQIASYVIDSQENIPGPA--YSGRETIYPNGSLLFQNVTLEDAGNYTLQAIKKNFHNEEVTGQLHIY- ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 123; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 123; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 123; END; BEGIN TREES; Title Imported_trees; ID 015d9d40da825; LINK Taxa = Taxa; TRANSLATE [0] 1 Myotis_lucifugus_PSG1, [1] 2 Myotis_lucifugus_PSG2, [2] 3 Myotis_lucifugus_PSG3, [3] 4 Myotis_lucifugus_PSG4, [4] 5 Myotis_lucifugus_PSG5, [5] 6 Myotis_lucifugus_PSG6, [6] 7 Myotis_lucifugus_PSG7, [7] 8 Myotis_lucifugus_PSG8, [8] 9 Myotis_lucifugus_PSG9, [9] 10 Myotis_lucifugus_PSG10, [10] 11 Myotis_lucifugus_PSG11, [11] 12 Myotis_lucifugus_PSG12, [12] 13 Myotis_lucifugus_PSG13, [13] 14 Myotis_lucifugus_PSG14, [14] 15 Myotis_lucifugus_PSG15, [15] 16 Myotis_lucifugus_PSG16, [16] 17 Myotis_lucifugus_PSG17, [17] 18 Myotis_lucifugus_PSG_18, [18] 19 Myotis_lucifugus_PSG19, [19] 20 Myotis_lucifugus_PSG20, [20] 21 Myotis_lucifugus_PSG21, [21] 22 Myotis_lucifugus_PSG22, [22] 23 Myotis_lucifugus_PSG23, [23] 24 Myotis_lucifugus_PSG24, [24] 25 Myotis_lucifugus_PSG25, [25] 26 Myotis_lucifugus_PSG26, [26] 27 Myotis_lucifugus_PSG27, [27] 28 Myotis_lucifugus_PSG28, [28] 29 Myotis_lucifugus_PSG29, [29] 30 Myotis_lucifugus_PSG30, [30] 31 Myotis_lucifugus_PSG31, [31] 32 Myotis_lucifugus_PSG32, [32] 33 Myotis_lucifugus_PSG33, [33] 34 Myotis_lucifugus_PSG34, [34] 35 Myotis_lucifugus_PSG35, [35] 36 Myotis_lucifugus_PSG36, [36] 37 Myotis_lucifugus_PSG37, [37] 38 Myotis_lucifugus_PSG38, [38] 39 Myotis_lucifugus_PSG39, [39] 40 Myotis_lucifugus_PSG40, [40] 41 Myotis_lucifugus_PSG41, [41] 42 Myotis_lucifugus_PSG42, [42] 43 Myotis_lucifugus_CC1L1, [43] 44 Myotis_lucifugus_CC1L2, [44] 45 Myotis_lucifugus_CC1L3, [45] 46 Myotis_lucifugus_CC3L1, [46] 47 Myotis_lucifugus_CC3L2, [47] 48 Myotis_lucifugus_CC3L3, [48] 49 Eidolon_helvum_269716, [49] 50 Eidolon_helvum_255325, [50] 51 Eidolon_helvum_74552, [51] 52 Eidolon_helvum_357734, [52] 53 Megaderma_lyra_119235, [53] 54 Pteropus_alecto_796, [54] 55 Pteropus_alecto_19407, [55] 56 Pteropus_alecto_36881, [56] 57 Pteropus_alecto_36885, [57] 58 Pteropus_alecto_3909, [58] 59 Pteropus_vampyrus_280890, [59] 60 Pteropus_vampyrus_219933_1, [60] 61 Pteropus_vampyrus_219933_2, [61] 62 Pteropus_vampyrus_219933_3, [62] 63 Pteropus_vampyrus_348119, [63] 64 Rousettus_aegyptiacus_262_1, [64] 65 Rousettus_aegyptiacus_888_3, [65] 66 Rousettus_aegyptiacus_888_4, [66] 67 Rousettus_aegyptiacus_1181, [67] 68 Rousettus_aegyptiacus_1354_1; TREE Imported_tree_1 = ((((((((((23:0.08592513,39:0.08592513)0.6300:0.02237863,20:0.10830376)0.5440:0.02463438,(4:0.08592513,22:0.08592513)0.8640:0.047013)0.1720:0.01557668,21:0.14851482)0.0760:0.00744574,(1:0.1249059,2:0.1249059)0.5640:0.03105466)0.0800:0.00933759,(8:0.15065856,(37:0.13860539,(5:0.10503573,24:0.10503573)0.5960:0.03356965)0.2400:0.01205318)0.1560:0.01463959)0.2580:0.0134928,6:0.17879095)0.9000:0.07006,(((25:0.06153005,35:0.06153005)0.9720:0.05004173,27:0.11157178)0.9980:0.12703177,((7:0.11819439,26:0.11819439)0.9640:0.07891033,(28:0.08914895,(3:0.05561282,38:0.05561282)0.8240:0.03353613)0.9920:0.10795577)0.8000:0.04149882)0.4500:0.01024741)1.0000:0.10402507,(32:0.34308449,((9:0.23816972,40:0.23816972)0.4200:0.01524767,(((36:0.01604416,41:0.01604416)0.6080:0.00822699,12:0.02427115)1.0000:0.1936147,(((13:0.0106387,42:0.0106387)0.9320:0.02198156,31:0.03262026)0.9980:0.13300095,(((14:0.0497648,29:0.0497648)0.6600:0.01778964,30:0.06755443)0.9160:0.09447551,((33:0.1249059,34:0.1249059)0.4220:0.01740469,(((11:0.03827004,18:0.03827004)0.6980:0.02037143,16:0.05864147)0.9500:0.06548681,((10:0.07971387,17:0.07971387)0.6600:0.03543265,(15:0.09221452,19:0.09221452)0.3900:0.022932)0.1740:0.00898176)0.1700:0.01818232)0.3060:0.01971935)0.3260:0.00359127)0.8540:0.05226464)0.6140:0.03553154)0.9140:0.08966709)0.5380:0.00979154)0.9720:0.1052952,(((58:0.14559851,64:0.14559851)0.6800:0.07833349,52:0.22393199)0.7340:0.07696201,((56:0.11819439,63:0.11819439)0.7680:0.1336399,((((43:0.07971387,44:0.07971387)0.6960:0.0205653,(45:0.03827004,46:0.03827004)0.9740:0.06200913)0.5840:0.02483901,(47:0.11819439,48:0.11819439)0.3260:0.00692378)0.9920:0.09383506,(53:0.21243585,(51:0.16867745,((50:0.11157178,68:0.11157178)0.7320:0.04997649,(49:0.12508695,(((54:0.06751814,60:0.06751814)0.4820:0.02533812,57:0.09285627)0.4660:0.0232862,(((66:0.01604416,67:0.01604416)0.7860:0.01946484,65:0.035509)0.9840:0.05627424,(62:0.08188593,(55:0.0587816,(59:0.03827004,61:0.03827004)0.5640:0.02051157)0.6400:0.02310433)0.4060:0.0098973)0.6140:0.02435923)0.3080:0.00894448)0.6500:0.03646132)0.2520:0.00712918)0.3200:0.0437584)0.2020:0.00651738)0.3140:0.03288106)0.7080:0.04905971)0.9720:0.15727722); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1501582806703; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 5823689963210381970; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 5229729510699914236; mqVersion 320; checksumv 0 3 23016216 null getNumChars 123 numChars 123 getNumTaxa 68 numTaxa 68 short false bits 1048575 states 1048575 sumSquaresStatesOnly 1.52214347963788E14 sumSquares 1.52214347963788E14 longCompressibleToShort false usingShortMatrix false NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 884 581; setLocation 306 94; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #5823689963210381970 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #5823689963210381970; getWindow; tell It; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 784 509; setLocation 306 94; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #5823689963210381970 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 015d9d40da825; toggleUseWeights off; endTell; setAssignedID 1338.1501582521042.6988385188386027892; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 784 509; setLocation 306 94; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.ornamental.CircularTree.CircularTree; tell It; setEdgeWidth 6; getEmployee #mesquite.ornamental.NodeLocsCircular.NodeLocsCircular; tell It; branchLengthsToggle off; toggleScale on; endTell; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #5229729510699914236 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 784 509; setLocation 306 94; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;