NEXUS
[File created by TreeBASE:  1/16/09  15:37:48]
[Matrix accession#: M4076]

BEGIN TAXA;
	TITLE M4076;
	DIMENSIONS  NTAX=45;
	TAXLABELS
		Arabidopsis_korshinskyi_45	Arabidopsis_thaliana_44	Arabis_gemmifera_43	Aspergillus_nidulans_14	Bacillus_anthracis_6	Bacillus_circulans_5	Beta_vulgaris_28	Betula_pendula_36	Betula_pendula_37	Candida_albicans_20	Capsicum_annum_42	Cicer_arietinum_32	Coccidioides_immitis_13	Enterococcus_faecalis_8	Glycine_max_26	Glycine_max_31	Hypocrea_virens_16	Listeria_innocua_9	Nicotiana_tabacum_34	Nicotiana_tabacum_35	Oryza_sativa	Oryza_sativa_24	Oryza_sativa_27	Oryza_sativa_29	Oryza_sativa_38	Oryza_sativa_39	Oryza_sativa_40	Pseudomonas_aeruginosa_11	Pseudomonas_fluorescens_12	Rhizopus_microsporus_18	Rhizopus_virens_17	Saccharomyces_crevisiae_19	Serratia_marcescens_10	Shewanella_oneidensis_7	Streptomyces_coelicolor_1	Streptomyces_lividans_2	Trichoderma_harzianum_15	Triticum_aestivum_21	Triticum_turgidum_22	Vibrio_cholerae_3	Vigna_unguiculata_25	Vigna_unguiculata_41	Vigna_unguuiculata_33	Xanthomonas_sp_4	Zea_mays_30
	;
END;

BEGIN CHARACTERS;
	TITLE M4076;
	DIMENSIONS NCHAR=408;
	FORMAT DATATYPE = PROTEIN SYMBOLS = " 1 2 3 4 " MISSING = ? GAP = - ;
	MATRIX
		Arabidopsis_korshinskyi_45       SRGGIAIYWGQN-GN---------EGNLSATCA-TGRYAYVNVAFLVKFG----NGQTPELNLAGHCN------PAANT-------CT-HFGSQVKYCQSRGIKVMLSLGGG----IGNYSIGSKEDAKVVADYLWNNFLGG----KS--SSRPLG-DAVLDGIDFNIELGS------PQHWDD--------LARSLSKLSH--RG------RK---VYLTGAPQC-PFPD----------RLMGNALNTR---RFDYVWIQFYN-NPP--CSYTS--G--------NTQNL----FDSWNKWTT--S-------ITAQ-KIFLGLPAAPEASGS---G----YIPPDVLTSQILPTLKKS-----------RKYGGVMLWSKFWDD----KD-----GYSSSILATV
		Arabidopsis_thaliana_44          SRGGIAIYWGQN-GN---------EGNLSATCA-TGRYAYVNVAFLVKFG----NGQTPELNLAGHCN------PAANT-------CT-HFGSQVKDCQSRGIKVMLSLGGG----IGNYSIGSREDAKVIADYLWNNFLGG----KS--SSRPLG-DAVLDGIDFNIELGS------PQHWDD--------LARSLSKFSH--RG------RK---VYLTGAPQC-PFPD----------RLMGSALNTK---RFDYVWIQFYN-NPP--CSYTS--G--------NTQNL----FDSWNKWTT--S-------IAAQ-KIFLGLPAAPEAAGS---G----YIPPDVLTSQILPTLKKS-----------RKYGGVMLWSKFWDD----KN-----GYSSSILASV
		Arabis_gemmifera_43              SRGGIAIYWGQN-GN---------EGNLSATCA-TGRYAYVNVAFLVKFG----NGQTPELNLAGHCN------PAANT-------CT-RFGSQVKDCQSRGIKVMLSLGGG----IGNYSIGSREDAKVVADYLWNNFLGG----KS--SSRPLG-DAVLDGIDFNIELGS------PQHWDD--------LARSLSKLSY--KG------RK---VYLTGAPQC-PFPD----------RLMGSALNTR---LFDYVWIQFYN-NPP--CSYTS--S--------NTQNL----FDSWNKWTT--S-------ITAQ-KIFLGLPAAPEAAGS---G----YIPPDVLTSQILPVLKKS-----------RKYGGVMLWSKFWDD----KN-----GYSSSILPGV
		Aspergillus_nidulans_14          AKSNIAVYYGQG-VN---------QPRLAEFCA-ETSYDIINIGFINSFPEQNPLTGLPGSDFGNQCWADT--FVVDGIASQLYSHCP-NIAEDIPKCQAAGKKVFLSLGG---AT-PTYWFDTIDASTKLADFLWGAFGPVTDAWTVADKPRPFG-NAVVDGFDFDIEFFGS-----K-GYAN--------MIKRFRRRFG--EV------PD-QTFYISAAPQC-SIPD----------EQLSVAIKNA---VIDFVWVQFYN-TPG--CSARDFVL--------GTKNG--FNYDSWVEVIKA-G-------ANPNAKLYVGLPASGAAANL---GY---YLT-PEEVKPLVKKYMDKYP---------ETFGGVMLWEATQAR----NNQIDGVGYNEKIREIL
		Bacillus_anthracis_6             SK-LLVGYWHNFDNGTG---------IIKLRDV-SPKWDVINVSFGETGGD---RS-TVEFSPVYG--------------------TDAEFKSDISYLKSKGKKVVLSIGG-------QNGVVLLPDNAAK-QRFINSIQSL---------IDKYG----FDGIDIDLE-SGIYLNGNDTNFKNPTTPQIVNLISAIRTISDH-YG------PD---FLLSMAPETAYVQGGYSAYRSIWGAYLPIIYGVKD--KLTYIHVQHYNAGSG--IG-MDGNN-----YNQGTADYEVAMADMLLHGFPIGGNANNMFPALRSDQVMIGLPATPAAAPS---GGYISPTEMKKALDYIIKGIPFGGKYKLSNESGYPAFRGLMSWSINWD-----AKN--NFEFSSNYRTYF
		Bacillus_circulans_5             SK-WLIGYWHNFDNGST---------NIKLRNV-STAYDVINVSFAEPISP---GSGTLAFTPYNA--------------------TVEEFKSDIAYLQSQGKKVLISMGG-------ANGRIELTDATKKRQQFEDSLKSI---------ISTYG----FNGLDIDLEGSSLSLNAGDTDFRSPTTPKIVNLINGVKALKSH-FG------AN---FVLTAAPETAYVQGGYLNYGGPWGAYLPVIHALRN--DLTLLHVQHYNTGSM--VG-LDGRS-----YAQGTADFHVAMAQMLLQGFNVGGSSGPFFSPLRPDQIAIGVPASQQAAG----GGYTAPAELQKALNYLIKGVSYGGSYTLRQPAGYVGLKGIMTWSINWD-----AYT--NNQFSNAHRPFL
		Beta_vulgaris_28                 HGSQIVIYWGQN-GD---------EGSLADTCN-SGNYGTVILAFVATFG----NGQTPALNLAGHCD------PATN--------CN-SLSSDIKTCQQAGIKVLLSIGGG----AGGYSLSSTDDANTFADYLWNTYLGG----QS--STRPLG-DAVLDGIDFDIESGD------GRFWDD--------LARALAGHNN--GQ------KT---VYLSAAPQC-PLPD----------ASLSTAIATG---LFDYVWVQFYN-NPP--CQYDT-----------SADNL----LSSWNQWT---T-------VQAN-QIFLGLPASTDAAGS---G----FIPADALTSQVLPTIKGS-----------AKYGGVMLWSKAYD------S-----GYSSAIKSSV
		Betula_pendula_36                EAGVITVYWGQN-GN---------EGSLADACA-TGNYGIVNIAFLSTFG----NGQTPSINLAGHCSTN----PATNE-------CTAGFSNDIKACQNQGIKVMLSIGGA----EGSYSLSSADDARSVANYLWNNFLGG----QS--DSRPFG-DAVLDGIDFDIEGGGT-----AEHWDE--------LAKALAEFSQ--Q-------KK---VYLTAAPQC-PFPD?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
		Betula_pendula_37                ??????????????N---------EGSLADACA-TGNYGIVNIAFLSTFG----NGQTPSINLAGHCSTV----PATNE-------CTAGFSNDIKACQNQGIKVMLSIGGAVVPGGGSYSLSSADDARSVANYLWNNFLGG----QS--DSRPFG-DAVLDGIDFDIEGGGT-----AEHWDE--------LAKALAEFSQ--Q-------KK---VYLTAAPQC-PFPD----------ALLGGALNTG---LFDYV?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
		Candida_albicans_20              ???NIAAYWGQN-AGG-------DQQTLGDYCS-SSPASIIILSFLDGFP---NLS----LNFANQC-------SGTFS--SGLAHCS-QIGSDIKSCQQQGKTILLSLGG---AT-GNYGFSSDSEAVQFAGTLWNKFGGGK---DS---ERPFD-DAIVDGFDFDIENKDQ-----T-GYAA--------LATQLRKYF---ST------GT-KSYYLSAAPQC-PYPD----------ESVGDLMSQV---DLDFAFIQFYN-NY---CS---------------LNQQ--FNWNSWSNYAR-----------GKSIKLYLGLPGSSSSAGS---G----FVG-LSTVQRVVASIKGD-----------SSFGGISIWDISSAE----NG???????????????
		Capsicum_annum_42                S--GIAIYWGQN-GN---------EATLNDTCA-SGNYAYVNLSFLNKFG----NGQTPEINLAGHCN------PAVNG-------CT-ILGPQIKFCQKLGVKVMLSMGGG----VGNYSLASKKDAKDVARYLYNNFLGG----RS--SFRPLG-NARLDGIDFDIELGS------SLYYED--------LAQYLKRYSK--LG------RK---MYLTAAPQC-PFPD----------RLLGTALNTG---LFDNVWIQFYN-NPS--CQYTT--N--------NVDDL----KNSWTRWTT--S-------VNAR-RIFLGLPAAPQAAGS---G----FIPAEVLTGGILPVIKKS-----------RKYGGVMLWSKFWDE----QT-----GYSASIVKSV
		Cicer_arietinum_32               NAAGIAVYWGQN-GN---------EGSLQDACN-TNNYQFVNIAFLSTFG----NGQNPQINLAGHCD------PSTNG-------CT-KFSPEIQACQAKGIKVLLSLGGG----AGSYSLNSAEEATTLANYLWNNFLGG----TS--TSRPLG-DAVLDGIDFDIESGG------Q-HYDE--------LAKALNGFS----Q------QK---VYLSAAPQC-PYPD----------AHLDSAIQTG---LFDYVWVQFYN-NPQ--CQYSN--G--------NINNL----VNAWNQWT---S-------SQAK-QVFLGVPASDAAAPS---G---GLIPADVLTSQVLPAIKTS-----------PKYGGVMIWDRFNDA----QS-----GYSNAIKGSV
		Coccidioides_immitis_13          AKSNLAVYWGQG-AG---------QNRLSYFCE-KTSFDIIVVGFINVFPDQGP-AGWPGSNFGNQC-ADSYYYTKNGTKTKLLDGCY-QIKEDLPKCKALGKTILLSLGGG--AVHDFYEVKSEESALNFADFLWGAFGPLTPDWTG---PRPFG-EASVDGFDFDIEKGSN-----F-GYSI--------MVRRLRELFL--QD------PL-NRYYISAAPQC-IMPD----------KYLSHAISNS---AFDFIFIQFYN-NPS--CSAKRWVT--------NPKSVT-YTVDDWVKYIRK-S-------GNPLAKLFIGLPASKSAAAK---ED---YLT-PGEATKIVSTYMAKYP---------STFGGMMVWEATASE----NNKLGGLPYADIMKEVL
		Enterococcus_faecalis_8          GKKVLVGYWHNWASKGRDGYKQGTSASLNLSEV-NQAYNVVPVSFMKSDGT---T-RIPTFKP-------------YNQ-------TDTAFRQEVAQLNSQGRAVLLALGG-------ADAHIQLVKGDEQ--AFANEIIRQ---------VETYG----FDGLDIDLEQLAITAGDNQTVIPA--------TLKIVKDHYRA-QG------KN---FIITMAPEFPYLK------PG--AAYETYITSLNG--YYDYIAPQLYNQGGD--GVWVDEIM----TWVAQSNDALKYEFLYYMSDSLIHGTRG--YLQIPNDKLVLGLPANRDAAGS---GYVVEATPVAKTFDQL-AKDGNP-------------IRGLMTWSANWDVGQDVNGKSYNNEFATRYSNLV
		Glycine_max_26                   TTGGITIYWGQN-ID---------DGTLTSTCD-TGNFEIVNLAFLNAFG----CGITPSWNFAGHCG-D----WN--P-------CS-ILEPQIQYCQQKGVKVFLSLGGA----KGTYSLCSPEDAKEVANYLYQNFLSG--------KPGPLG-SVTLEGIDFDIELG-S-----NLYWGD--------LAKELDALRH--QN------DHY--FYLSAAPQC-FMPD----------YHLDNAIKTG---LFDHVNVQFYN-NPP--CQYSP--G--------NTQLL----FNSWDDWTSN-V-------LPNN-SVFFGLPASPDAAPS---G---GYIPPQVLISEVLPYVKQA-----------SNYGGVMLWDRYHDV----LN-----YHSDQIKDYV
		Glycine_max_31                   HAAGIAIYWGQN-GG---------EGTLAEACN-TRNYQYVNIAFLSTFG----NGQTPQLNLAGHCD------PNNNG-------CT-GLSSDIKTCQDLGIKVLLSLGGG----AGSYSLSSADDATQLANYLWQNFLGG----QT--GSGPLG-NVILDGIDFDIESGG------SDHYDD--------LARALNSFSS---Q------RK---VYLSAAPQC-IIPD----------AHLDRAIQTG---LFDYVWVQFYN-NPS--CQYSS--G--------NTNNL----INSWNQWI---T-------VPAS-QIFMGLPASEAAAPS---G---GFVPADVLTSQVLPVIKQS-----------SKYGGVMLWNRFNDV----QN-----GYSNAIIGSV
		Hypocrea_virens_16               SKQNIAVYWGQNSANSQS-----TQQRLSFYCN-DANINVIDIAFLNGIT---P----PMTNFANAG--DR---CTPFSDNPWLLSCP-EIEADIKTCQANGKTIILSLGGD--SYTQGGWSSAS-AAQSAANQVWAMFGPVQSGSTV---HRPFG-SAVVDGFDFDFEATTN-------NLAA--------FGTQLKSRTN--AA------GG-KKYYFSAAPQC-FFPD----------AAVGALINAV---PMDWIQIQFYN-NP---CGVSGFTP--------GTSTQNNYNYQTWENWAKT-S-------PNPNVKLLVGIPAGPTAGRG--------YVS-GSQLT-SVFQYSKQF----------STFAGAMMWDMSQLF----QN----TGFEAQVVNAL
		Listeria_innocua_9               NKQVLVGYWHSWKSSGKDGYQQGTSADIALKDT-PKAYNVVDVSFMKGDGV---N-RIPTFKP-------------VGI-------NDSDFRAQVGALNKEGRAVLLALGG-------ADGHVELKAGDEQ--AFANEIIRQ---------VETYG----FDGLDIDLEQSAITAGDNKTVIPA--------ALKIVKDHYKA-QG------KN---FLITMAPEFPYLK------PG--SAYESYLTSLAN--YYDYIAPQLYNQGGD--GVWVDETN----QWIAQNNDTLKESFLYYMADSFINGTRG--YLKIPANKFVFGLPANVDAAAT---GYVKDPQIVQNVFNRLQAK-GTP-------------VKGVMTWSVNWDAGKNSAGVAYNNGFSNAYGPIV
		Nicotiana_tabacum_34             KAGDIVVYWGQD-VG---------EGKLIDTCN-SGLYNIVNIAFLSSFG----NFQTPKLNLAGHCE------PSSGG-------CQ-QLTKSIRHCQSIGIKIMLSIGGG----TPTYTLSSVDDARQVADYLWNNFLGG----QS--SFRPLG-DAVLDGIDFDIELG-------QPHYIA--------LARRLSEHGQ--QG------KK---LYLTAAPQC-PFPD----------KLLNGALQTG---LFDYVWVQFYN-NPE--CEFMS--N--------S-ENF----KRRWNQWT---S-------IPAK-KLYIGLPAAKTAAGN---G----YIPKQVLMSQVLPFLKGS-----------SKYGGVMLWNRKFDV----QC-----GYSSAIRGAV
		Nicotiana_tabacum_35             EAGDIVIYWGQN-GN---------EGSLADTCA-TNNYAIVNIAFLVVFG----NGQNPVLNLAGHCD------PNAGA-------CT-GLSNDIRACQNQGIKVMLSLGGG----AGSYFLSSADDARNVANYLWNNYLGG----QS--NTRPLG-DAVLDGIDFDIEGG-T-----TQHWDE--------LAKTLSQFSQ--Q-------RK---VYLTAAPQC-PFPD----------TWLNGALSTG---LFDYVWVQFYN-NPP--CQYSG--G--------SADNL----KNYWNQWN---A-------IQAG-KIFLGLPAAQGAAGS---G----FIPSDVLVSQVLPLINGS-----------PKYGGVMLWSKFYDN-----------GYSSAIKANV
		Oryza_sativa                     KTGQMTVFWGRN-KN---------EGTLKETCD-TGLYTTVVISFYSVFG----HGRYWG-DLSGHDL-------R-------------VIGADIKHCQSKNIFVFLSIGGA----GKDYSLPTSKSAADVADNIWNAHMDGRR--PG--VFRPFG-DAAVDGIDFFIDQGAP------DHYDD--------LARNLYAYNKMYRA------RTP--VRLTATVRC-AFPD----------PRMKKALDTK---LFERIHVRFYD-DAT--CSYNH--A--------GLAGV----MAQWNKWT-A-R-------YPGS-HVYLGLAAAN--VP----GKND-NVFIKQLYYDLLPNVQKA-----------KNYGGIMLWDRFYDK----QT-----GYGKTVKYWA
		Oryza_sativa_24                  RRRNVVVFWGGN-KN---------EGSLRSVCD-SGLYNIVIISFYSLFG----HGRYWD-DLSGHDL-------R-------------HIGADITHCHFKAVYVLLSIGGGD---GKDYSLPSSKSAADVADNLYNSFLGGSR--PG--VYHPFGDDVTVVGIDFFIDRGQP------DHYYE--------IAERINYDTRHWRD------PIG--FKLTATVSC-AYDDS--------DPRMKKALETY---LFRRIHVRFYD-DPR--CSYNH--A--------GLAGV----MAQWNRWS-A-S-------YPYNGKIYLGLAAAN--LT----GKND-MVAVGELYRKLLPAVQKT-----------DTYGGVMLWNSYYDS----IT-----HYGRYVSAWA
		Oryza_sativa_27                  GGVNIAVYWGQN-GS---------EGTLGETCG-TGLYAYVNLAFLSTFG----AGRAPVLNLADHCD------APSGT-------CA-SLAADIASCQAAGVKVLLSIGGG----ALGYNLSSPSDARDLAAYLWDNFLGGGA--TG--ASRPLG-DAVLDGVDFDIESPS-------RFYDD--------LARNLASLYT--RAPRPPRGGKT--YLLTAAPQC-PYPD----------ASLAAALATG---LFDHVWVQFYN-NPP--CQYAAP-G--------DASAL----RSAWAQWTA--G-------LPAA-TVFLGLPASLDAADS---G----FVDADTLASQVLPVVEGA-----------ANYGGIMLWSRSYDK----DS-----SFSVKLQAAL
		Oryza_sativa_29                  RAGDIAVYWGQN-GD---------EGSLADACN-SGLYAYVMVAFLSTFG----NGQTPVLNLAGHCE------PSSGG-------CT-GQSSDIQTCQSLGVKVILSIGGG----AGSYGLSSTQDAQDVADYLWNNFLGG----SS--GSRPLG-DAVLDGVDFDIETGN------PAHYDE--------LATFLSRYSA--QGGG----KK---VILTAAPQC-PYPD----------ASLGPALQTG---LFDSVWVQFYN-NPP--CQYAN--G--------DASNL----VSAWNTWTG--G-------VSAG-SFYVGVPAAEAAAGS---G----YVAPGDLTSAVLPAVQGN-----------AKYGGIMVWNRFYDV----QN-----NFSNQVKSSV
		Oryza_sativa_38                  RAGDIAIYWGQN-GN---------EGTLAQTCA-TGNYRFVIVAFLPVFG----KGQTPVLNLAGHCD------PASNG-------CT-GVGADIKSCQSLGIKVMFSIGGG----VGNYGLSSRDDAKQVAAYLWNNYLGG----TS--PSRPLG-DAVMDGIDFDIESGG------GMYWDD--------LARYLKAYSR--QGSS----KKP--VYLTAAPQC-PFPD----------ASLGVALSTG---LFDYVWVQFYN-NPP--CQYSSS-N--------GVGNL----ASAWKQWT---S-------IPAG-RVFLGLPAAAEAAGS---G----FVETSDLVSKVLPVVKKS-----------PKYGGIMLWSRYYDG----LT-----GYSDKVKSSV
		Oryza_sativa_39                  QAGSIAIYWGQN-NG---------EGTLADTCA-TGNYKFVNIAFLAAFG----NGQPPVFNLAGHCD------PTNGG-------CA-SQSSDIKSCQSRGVKIMLSIGGG----AGSYYLSSSEDAKNVATYLWNNFLGG----QS--SSRPLG-DAVLDGIDFDIEGGT------NQHWDD--------LARYLKGYSN--SG------RR---VYLTAAPQC-PFPD----------ACIGDALNTG---LFDYVWVQFYN-NPP--CQYSS--G--------STSNL----ADAWKQWL---S-------VPAK-QIFLGLPASPQAAGS---G----FIPADDLKSQVLPVIKSS-----------GKYGGIMLWSKYYDD----QD-----DYSSSVKSDV
		Oryza_sativa_40                  HAGGIAVYWGQN-DG---------EASLAETCA-SGNYEFVIIAFLPKFG----KGQTPRVDLASHCD------PASGG-------CT-GQSKDIRACQRRGVKVLLSIGGG----DGSYGLSSPGDARQVAMYLWNNFLGG----SS--SSRPLG-DAVLDGIDFDIELGG------AKFWDD--------LARDLKSLGR--SGG-----RR---VVLSAAPQC-PFPD----------EWDGGAISTG---LFDAVWVQFYN-NPE--CQFSA-----------GRGAF----MDAWRKWE---S-------VPAG-RLFLGLPASKDAAGT---G----FVPAGELNSRVLPLIRGS-----------PKYGGVMLWSKYYDD----QT-----GYSSAIKSHV
		Pseudomonas_aeruginosa_11        GKKILMGFWHNWPAGAADGYQQGSFANIALEDV-PSEYNVVAVAFMKGRG-------IPTFQP-------------YNL-------SDAEFRRQVGVLNAQGRAVLISLGG-------ADAHIELHAGQEQ--ALAAEIVRL---------VETYG----FDGLDIDLEQSAIDLADNQRVLPA--------ALKLVREHYAG-QG------KH---FIVSMAPEFPYLH------KN--GKYVPYLQALEG--VYDFIAPQYYNQGGD--GLWVQEANGGKGAWIAQNNDAMKEDFLYYLTESLATGSRD--FVRIPAQRLAIGLPSNVDAAAT---GYVIDPAAVSNAFRRLEAA-GHA-------------IKGLMTWSVNWDDGLNKRGERYNWEFRKRYASLI
		Pseudomonas_fluorescens_12       GKKILMGFWHNWPAGPSDGYQRGQFANIALENV-PKEYNVVAVAFMKGSG-------IPTFKP-------------FNV-------SDAEFRRQVGVLNSQGRAVLISLGG-------ADAHIELRAGQEQ--PLANEIIRL---------VETYG----FDGLDIDLEQSAIDFAANKTVLPA--------ALKLVKDHYAG-QG------KH---FIISMAPEFPYLT------TS--GKYVGYLQALEG--YYDFIAPQFYNQGGD--GVWVPEANNGNGAWIAQNNDTMKEDFLYYLTESLVTGTRG--FTKIPADKFVIGLPANVDAAAT---GYVIDKTVVGNAMKRLAVK-GHP-------------IKGLMTWSVNWDNGTSKDRVPYDWEFSRRYGPLI
		Rhizopus_microsporus_18          HGPNVMYYWGQNSAGGSN-----TQASLGTYCE-SGQVDAVLLSFLHVF----NVGGIPEINLSSAC-------AGTYFPNTQLLSCP-AVGADIKKCQDKGVKVILSLGG---AA-GVYGFTSDAQGQQFAQTIWNLFGGGN---SD---TRPFG-DAVIDGVDLDIEGGSS-----T-GYVA--------FVNALRQKF------------S-SNFLIGAAPQC-PFPD----------AILGSVLNSA---SFDYVNVQFYN-NY---CS-A-------------TGSS--FNFDTWDNWAKTTS-------PNKNVKIMFTVPGSSTAAGS---G----YVP-MSTLQTIVPSLASKY----------SSYGGVSVWDASQAW----NN----GGFNSQLYSLV
		Rhizopus_virens_17               NGVNVMYYWGQNSAGGSN-----TQGSLVSYCQ-SGQVDVIILSFLNKF----NMGGLPEINLASAC-------EQTFFPNTNLLHCP-TVGSDIKTCQSNGVKVLLSLGG---AA-GSYGFSSDSEGQTFAETIWNLFGGGT---SD---TRPFD-DAVIDGIDLDIEGGSS-----T-GYAA--------FVTALRSK---------------GHFLIGAAPQC-PFPD----------AILGSVIDAV---GLDFVNVQFYN-NV---CSVA-------------SGSS--FNFDVWNDWAKNKS-------PNKNIKVMLTVPGSSTAAGS---G----YAS-IAELGPIVSSVISQY----------SSFGGVSVWDASQAW----NN----NGFHSELYSIV
		Saccharomyces_crevisiae_19       ANTNIAVYWGQN-SAG-------TQESLATYCE-SSDADIFLLSFLNQFP---TLG----LNFANAC-------SDTFS--DGLLHCT-QIAEDIETCQSLGKKVLLSLGG---AS-GSYLFSDDSQAETFAQTLWDTFGEGTG--AS---ERPFD-SAVVDGFDFDIENNNE-----V-GYSA--------LATKLRTLF---AE------GT-KQYYLSAAPQC-PYPD----------ASVGDLLENA---DIDFAFIQFYN-NY---CS---------------VSGQ--FNWDTWLTYAQTVS-------PNKNIKLFLGLPGSASAAGS---G----YISDTSLLESTIADIASS-----------SSFGGIALWDASQAF----SN----E-LNGEPYVEI
		Serratia_marcescens_10           ?KKILMGFWHNWAAGASDGYQQGQFANMNLTDI-PAEYNVVAVAFMKGQG-------IPTFKP-------------YNL-------SDAEFRRQVGVLNSQGRAVLISLGG-------ADAHIELKTGDED--KLKDEIIRL---------VEVYG----FDGLDIDLEQAAIGAANNKTVLPA--------ALKKVKDHYAA-QG------KN---FIISMAPEFPYLR------TN--GTYLDYINALEG--YYDFIAPQYYNQGGD--GIWVDELN----AWITQNNDAMKEDFLYYLTESLVTGTRG--YAKIPAAKFVIGLPSNNDAAAT---GYVIDKQAVYNAFSRLDAK-NLS-------------IKGLMTWSINWDNGKSKAGVAYNWEFKTRYAPLI
		Shewanella_oneidensis_7          QAGVVVGYWHNWCGGA--GYKGGVAPCVSLAQV-NPQYNVVDISFMKVYGA---TGSIPTFKLDPA----------VGL-------SEAQFIDQIGELNRQGRAVLIALGG-------ADAHIELRKGQEH--DLANEIIRL---------VEKYG----FDGLDIDLEQAAVTAADNQIVIPA--------ALRIVKDHYRK-QQ------KN---FLITMAPEFPYLT------TG--GKYVPYINALEG--YYDWINPQFYNQGGD--GIYIEGIG-----WIAQNNDSLKQEFIYHISDALVNGTNG--FTKIPHDKLVFGIPTNIDAAAT---GYVSDPNALFAAFEQLKNQ-GQP-------------LRGLMTWSVNWDMGKNAAGQAYNESFIKAYGPFI
		Streptomyces_coelicolor_1        PKHAVTGYWQNFNNGAT---------VQKISDV-PSAYDIIAVAFADATTT----PGAVTFNLDSAGLG--------GY-------TVDQFKADVRAKQAAGKKVIISVGG-------EKGTVSVNSSASA-TNFANSVYSV---------MREYG----FDGVDIDLE-NG--LNPT---YMT----------QALRALSAK-AG------PD---MILTMAPQTIDMQ----STQG--G-YFQTALNVKD--ILTVVNMQYYNSGTM--LG-CDGKV-----YAQGTVDFLTALACIQLEG----G--------LAPSQVGLGLPASTRAAG----GGYVSPSVVNAALDCLTKATNCG---SFKPSKTYPDLRGAMTWSTNWD-----ATA--GNAWSNSVGAHV
		Streptomyces_lividans_2          PKHAVTGYWQNFNNGAT---------VQKISDV-PSAYDIIAVAFADATTT----PGAVTFNLDSAGLG--------GY-------TVDQFKADVRAKQAAGKKVIISVGG-------EKGTVSVNSSASA-TNFANSVYSV---------MREYG----FDGVDIDLE-NG--LNPT---YMT----------QALRALSAK-AG------PD---MILTMAPQTIDMQ----STQG--G-YFQTALNVKD--ILTVVNMQYYNSGTM--LG-CDGKV-----YAQGTVDFLTALACIQLEG----G--------LAPSQVGLGLPASTRAAG----GGYVSPSVVNAALDCLTKATNCG---SFKPSKTYPDLRGAMTWSTNWD-----ATA--GNAWSNSVGAHV
		Trichoderma_harzianum_15         SKQNIAVYWGQNSANSQS-----TQQRLSFYCN-DANINVIDIAFLNGIT---P----PMTNFANAG--DR---CTPFSDNPWLLQCP-EIEADIKTCQANGKTILLSLGGD--SYTQGGWSSTG-AAQSAADQVWAMFGPVQSGSSV---HRPFG-SAVVDGFDFDFEATTN-------NLAA--------FGAQLKSRTN--AA------GG-KKYYFSAAPQC-FFPD----------AAVGALINAV---PMDWIQIQFYN-NP---CGVSGFTP--------GTSTQNNYNYQTWENWAKT-S-------PNPNVKLLVGIPAGPGAGRG--------YVS-GSQLT-SVFQYSKGF----------STFAGAMMWDMSQLY----QN----TGFETQVVNAL
		Triticum_aestivum_21             KTGQVTVFWGRN-KA---------EGSLREACD-SGMYTMVTMSLLDVFGA---NGKYHL-DLSGHDL-------S-------------SVGADIKHCQSKGVPVSLSIGGY----GTGYSLPSNRSALDLFDHLWNSYFGGSK--PS--VPRPFG-DAWLDGVDLFLEHGTP-----ADRYDV--------LALELAKHN--IRG------GPGKPLHLTATVRC-GYPP---------AAHVGRALATG---IFERAHVRTYESDKW--CNQN---L--------GWEG-------SWDKWT-A-A-------YPAT-RFYVGLTADD--KS------HQ-WVHPKNVYYGVAPVAQKK-----------DNYGGIMLWDRYFDK----QT-----NYSSLIKYYA
		Triticum_turgidum_22             QTGQLTVFWGRN-AG---------EGTLREACD-TGLYSTVVISFYSVFG----HGRYWG-DLSGHPL-------A-------------GVGADIKHCQSRNILVLLSIGGP----RNGYSLPSSASATAVADNLWNAHLGGRR--NG--VYRPFG-DAAVDGIDFYIDQGAP------DHYDE--------LASRLDGHNRFYRG------RKG--VRLTATPRC-GLPD----------PRLGAALRTG---LFERIHVRFYG-NDS--CSLGK--G--------DTYGV----VEQWEKWT-A-A-------FPRT-QVYLGLAPAESGVPEWAQG-TV-AVYLKYLYYDLLPKVQKA-----------NNYGGVMVWDRFTDK----KT-----RWSSVVSGWA
		Vibrio_cholerae_3                KKHRLIGYWHNFVNGAGC--------PIRLADM-SQAWDVIDIAFAENDRN---STGTVHFNLYAGDIYS----SCPAL-------DPAQFKQDMKALQAKGKVFVLSLGG-------AEGTITLNTDQDE-ANFVSSLTAL---------IKEWG----FDGLDVDLE-SGSNLVHG-SQIQA-------RLGRALKQIEKN-IG------GD---MFLTMAPEHPYVQGGMVAYSGIWGAYIPVINEVRD--TLDILHVQLYNNGGL--PNPYTPSA-----APEGSVDMMVAQSKMLIEGFTLAN--GTRFEPLRDDQVAIGLPSGPSSAN----SGQAPTQNILDALDCLTKGTRCG---TIKPAFAYPNYAGVMTWSINWD-----KHD--GFNFSKPVGDKL
		Vigna_unguiculata_25             ?NGGIAVYWGQD-AR---------EGNLIATCD-SGKYAIVLLAFLHQFG----AGRTPTLNFAGHCG-D----SSGRS-------CG-LLQPQINYCQAKGIKVLLSIGGP----TGGYWLSSAEDAKDVANYLFINFLSG--------EFGPLG-SVMLDGVDFHVET--S-----EDYWDD--------LARELDLLRQ--TT------GRY--FYLSAAPQCPTDPI----------PYLGKAIATN---LFDYIFVQFYD-NPS--CSYTD--G---------TSAL----LESWDKWVDS-V-------ASNN-SLFVGVPAAPSAG-----D---GYIPPEVLNDEVLPHAKEA-----------SNYGGVMLWDRYRDV----QN-----GYSDSIMSNV
		Vigna_unguiculata_41             ???GIAIYWGQN-GN---------EGTLSEACD-TGRYTHVNIAFLNKFG----NGQTPEMNLAGHCN------PATNS-------CT-KFSAQIKYCQSKNIKVLLSIGGG----IGTYTLASVEDAGTVSTFLWNTFLGG----HS--STRPLG-DAELDGIDFDIEQGS------TQNYDH--------LARFLKAYSK--KG------KKR--VYLGAAPQC-PIPD----------RFLGTALDTG---LFDFVWVQFYN-NPP--CQYAD--G--------NVTNL----LNSWKRWTS--T-------VPAG-KIFLGLPAPPAAAGS---G----FVPADVLTSKILPVIKKS-----------RKYGGVMLWSRFFDV----QN-----GYSTSIIGSV
		Vigna_unguuiculata_33            ????ISVYWGQN-GN---------EGSLADACN-TGNYKYVNIAFLSAFG----GGQTPQLNLAGHCN------PSINN-------CN-VFSDQIKGCQSRGIKVLPSLGGA----SGSYSLSSADDATQVANYIWNNFLGG----QS--SSRPLG-DAVLDGVDFDIEAGS------GNHWDD--------LARSLKGNN-----------SQ---LLLAAAPQC-PIPD----------AHLDSAIKTG---LFDYVWVQFYN-NPP--CQYSS--G--------NTNSL----ISSWNQWT---S-------SQAK-QLFLGVPASTAAAGS---G----FIPANDLISQVLPAIKGS-----------SKYGGVMLWD??????????????????????????
		Xanthomonas_sp_4                 PRHALVGYWHNFTNPSGP--------TIPISQV-SNDFDVI-VRFGDDAGN-----GAVSFTVDPG-----------AG-------TEAQFKADVAAARARGKKVVLSLGG-------QNGTVTLNNATQV-ANFVNSMEDL---------IRYYG----FDGVDIDLE-SGAGVYHG-AAVQT-------NLVAAIKQLSAR-IG------PS---FYLSMAPEHPYVQGGFVAYSGIWGAYLPIIDGLRQ--ELDLIHVQYYNNGAL--YTPYSQNG-----LPEGSVDMLVGASLMLIEGFRTNNNTGVVFNGLRPDQVALGLPSGPSSAN----SGQASSATIANALNCLTRLQNCG---TIRPQQAYPTFRGVMTWSINWD-----RRD--GFIFSRPVRATL
		Zea_mays_30                      SAGNIAVYWGQN-GN---------EGSLADACN-SGLYAYVNIAFLTTFG----NGQTPVLNLAGHCD------PGSGS-------CT-GQSSDIQTCQSLGIKVLLSIGGA----SGSYGLSSTDDANSVADYLWDNFLGG----SG--SSRPLG-AAVLDGIDFDIENGQ------SAHYDD--------LANALK-------GKG----S----VLLTAAPQC-PYPD----------ASLGPALQTG---QFDNVWIQFYN-NPG--CAYAN--G--------DDTNL----VNAWNTWTS--S-------ITAG-SFYLGVPASPQAAGS---G----TSTP-ALTGTVIPAIRGI-----------GNYGGIMVWDRFNDV----QN-----NYSSQVKGSV
	;
END;

BEGIN CODONS;
CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;