NEXUS
[File created by TreeBASE:  1/16/09  15:37:48]
[Matrix accession#: M4078]

BEGIN TAXA;
	TITLE M4078;
	DIMENSIONS  NTAX=55;
	TAXLABELS
		Arabidopsis_thaliana_14	Arabidopsis_thaliana_23	Arabidopsis_thaliana_25	Arabidopsis_thaliana_27	Arabidopsis_thaliana_30	Arabidopsis_thaliana_34	Arabidopsis_thaliana_44	Arachis_hypogaea_35	Beta_vulgaris_10	Beta_vulgaris_11	Betula_pendula_15	Betula_pendula_16	Betula_pendula_28	Betula_pendula_29	Betula_pendula_45	Betula_pendula_46	Betula_pendula_52	Betula_pendula_53	Betula_pendula_54	Betula_pendula_55	Brassica_napus_22	Burkholderia_gladioli_2	Cynodon_dactylon_31	Glycine_max_51	Nicotiana_tabacum_43	Nicotiana_tabacum_49	Nocardiopsis_prasina_7	Oryza_japonica_26	Oryza_sativa_20	Oryza_sativa_21	Oryza_sativa_33	Oryza_sativa_37	Oryza_sativa_38	Oryza_sativa1BAA9_32	Persea_americana_42	Phaseolus_vulgaris_12	Phaseolus_vulgaris_47	Phytophthora_infestans_1	Picea_glauca_9	Pinus_strobus_36	Pisum_sativum_50	Poa_pratensis_39	Saccharum_officinale_19	Secale_cereale_40	Streptomyces_coelicolor_4	Streptomyces_griseus_8	Streptomyces_lavendulae_3	Streptomyces_olivaceoviridis_5	Streptomyces_thermoviolaceus_6	Triticum_aestivum_24	Triticum_aestivum_41	Vigna_sesquipedalis_48	Vigna_unguiculata_13	Zea_mays_17	Zea_mays_18
	;
END;

BEGIN CHARACTERS;
	TITLE M4078;
	DIMENSIONS NCHAR=271;
	FORMAT DATATYPE = PROTEIN SYMBOLS = " 1 2 3 4 " MISSING = ? GAP = - ;
	MATRIX
		Arabidopsis_thaliana_14              IVTQEFFNGIISQAASS-CAGNRFYSRGAFLEALDSY--SRFGRVGSTDDSRREIAAFFAHVTHETGR????????????NFCYIEEIDG----ASKDYCDEN-A---TQYPCNPNKGYYGRGPIQLS-----------WNFNYGPAGTAIGFDGLNAPETVATDPVISFKTALWYWTNR????????????????????VQPVIS--QGFGATIRAINGALECD--GANTATVQA-RVRYYTDYCRQLG?????VDPGNNLTCTTATA?T
		Arabidopsis_thaliana_23              IVTQIFFNNIINQAGNG-CAGKSFYTRDSFINATNTF--PSFANT????VTRREIATMFAHFTYETG?????????????HFCYIEEING----ASRVMCDQN-N---RQYPCAPAKSYHGRGPLLLS-----------WNFNYGACGQSLGLDLLRQPELVSSNPVVAFRTALWFWMKS????????????????????VRPVLN--QGFGATIRAISG-FDCD--GRNLGGVNA-RIGYYRDYCGQLG?????LDPGANITCTAATA?T
		Arabidopsis_thaliana_25              ?VTPDFFNSILNQ--RGDCPGKGFYTHDTFMAAANSY--PSFGAS????ISKREIAAFFAHVAQETG?????????????FMCYIEEIDGPAKAASGEYCDTE-K---PEFPCAQGKGYYGRGAIQLS-----------WNYNYGLCGKALDENLLASPEKVAQDQVLAFKTAFWFWTTN????????????????????VRTSFK--SGFGATIRAVNS-RECS--GGDSTAKAANRIKYFQDYCGKLG?????VAPGDNLTCTAATA?T
		Arabidopsis_thaliana_27              ????QFENLFSKRNS-PVAHAVGFWDYRSFITAAAEYQPLGFGTAGEKLQGMKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSP-----DQLYCDDYYKLT---YPCTPGVSYHGRGALPVY-----------WNYNYGQTGEALKVDLLSHPEYLENNATLAFQAAIWRWMTPPKKHLPSAHDVFVGKWKPTKNDTAAKRTPGFGATINVLYGDQICN--SGFDNDEMNNIVSHYLYYLDLIGVGREEAGPHEKLSCTTTTTTA
		Arabidopsis_thaliana_30              ????QFEQLFSKRNT-PIAHAVGFWDYQSFITAAALFEPLGFGTTGGKLMGQKEMAAFLGHVASKTSCGYGVATGGPLAWGLCYNREMSP-----MQSYCDESWKFK---YPCSPGAEYYGRGALPIY-----------WNFNYGAAGEALKADLLNHPEYIEQNATLAFQAAIWRWMTPIKRAQPSAHDIFVGNWKPTKNDTLSKRGPTFGSTMNVLYGEYTCG--QG-SIDPMNNIISHYLYFLDLMGIGREDAGPNDELSCTTTTTTA
		Arabidopsis_thaliana_34              LVPRTLYDQIFIHKDNNACPAKGFYPYEAFVEATRSF--PKFGSVGNFWTRRREVAAFLAQISHETTGGWATAPDGPYAWGLCFKEEV-----SPQSNYCDASNK----DWPCVSGKSYKGRGPIQLS-----------WNYNYGQAGRALGFDGLQNPELVANNSVLAFKTALWFWMTEQTPK-PSCHNVMVNRYRPTKADRAANRTVGYGLVTNIINGGLECG--IPGDGRVTD-RVGYFQRYAQLFK?????VTTGPNLDCTTTTTTT
		Arabidopsis_thaliana_44              IISSSQFDDMLKHRNDAACPARGFYTYNAFITAAKSF--PGFGTTGDTATRKKEVAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQ-----NPASDYCEPSAT-----WPCASGKRYYGRGPMQLS-----------WNYNYGLCGRAIGVDLLNNPDLVANDAVIAFKAAIWFWMTAQPPK-PSCHAVIAGQWQPSDADRAAGRLPGYGVITNIINGGLECG--RGQDGRVAD-RIGFYQRYCNIFG?????VNPGGNLDCTTTTTTT
		Arachis_hypogaea_35                  LISKTLFDSIFLHKDDNACPARNFYTYESFVEATSSF--PAFGSTGCSATRKREVAAFLAQISHETTGGWATAPDGPYAWGLCFKEEV-----SPQSDYCDSSNK----EWPCYPGKSYKGRGPIQLS-----------WNYNYGPAGKALGFDGLKNPDIVSNNSVIAFKTALWFWMTEQKPK-PSCHNVMVGNYVPTASDRAANRTLGFGLVTNIINGGLECG--VPDDARVND-RIGYFQRYAKLFN?????VDTGPNLDCTTTTTTT
		Beta_vulgaris_10                     IVSQAFFDGIIGQAAAS-CPGKNFYTRAAFLSAVD----PKFGNEGSSDDNKREIAAFFAHISHETT?????????????NLCHIEERDG---DVGDAYCDQDKA---AQYPCAAGKKYYGRGPLQLS-----------WNYNYALAGQAIGFDGLGNPEKVATDVNTSFKAAMWFWMTN????????????????????VHSVMN--QGFGATTKAINGALECN--GQNQDQAND-RIQFYKKYCADFG?????VAPGDNLTCTTATA?T
		Beta_vulgaris_11                     LVTDAFFNRIINQASAS-CAGKRFYTRAAFLSALRFY--PQFG-SGSSDVVRREVAAFFAHVTHETG?????????????HFCYIEEIAK----ST--YCQSS-----AAFPCNPSKQYYGRGPLQIT-----------WNYNYIPAGRSIGFDGLNAPETVANNAVTAFRTAFWFWMNN????????????????????VHSVIVNGQGFGASIRAING-IECN--GGNSAAVTA-RVGYYTQYCQQLG?????VSPGNNLRCTTATA?T
		Betula_pendula_15                    ?VTAEFFNGILDEADAS-CAGKNFFTRAAFLEALNSF--NEFGRIGSVDDSKREIAAFFAHVTHETG?????????????HFCYIEEIDG----ASKDYCDET-N---TEYPCNPDKGYYGRGPIQLS-----------WNFNYGPAGKSIGFDGLNSPETVANDPT?????????????????????????????????????????????????????????????????????????????????????????????????TTATA??
		Betula_pendula_16                    IVTPDFFNGILNQASGD-CPGKSFYTREAFLDALKSY--TQFGTTDSADDSKREIAAFFAHVTHETG?????????????FLCHIEEIDG----ASKDYCKHT-D---TEYPCNPNKNYYGRGPLQLS-----------WNYNYGAAGKSIEFDGLNSPET???????????????????????????????????????????????????????????????????????????????????????????????????????TTATA??
		Betula_pendula_28                    ?????????????????????????????????????QPDGFGTTGGKLSGMKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKELSP-----DSSYCDEYYKLT---YPCAPGAAYYGRGALPIY-----------WNYNYGKAGEALKVDLLNHPEYIEQNATLAFHAAIWRWMTPVKKHQPSAHDAFVGNWKPTKNDTLSKRLPGFGTTMNVLYGDGVCG--QG-DSDSMNNIVSHYQYYLDLMGVGREEAGPHEVLSC?TTTTTA
		Betula_pendula_29                    ????????????????????????????????????????????????????????????????ETSCGYGVATGGPLAWGLCYNKEMSP-----SQTYCDDSYKYT---YPCTPGAEYYGRGALPIY-----------WNFNYGATGEALKVNLLDHPEYIEQNATLAFQAAIWRWITPIKKSQPSAHDAFVGNWKPTKNDTLSKRVPGFGATMNILYGDLVCG--QG-DIDPMNTIISHYLYYYELMGGNREDAGTNEVLSC?TTTTTA
		Betula_pendula_45                    ???????????????????PAKGFYTYDVFIAAAKSF--PGFATTGDTATRKREIAAFLAQTSHETTGGWASAPDGPYSWGYCYLREQ-----NPGS-YCASDPN-----YPCASGRQYYGRGPIQLS-----------WNYNYGRCGKAIGVDLLNNPDLVATDAVISFKTAIWFWMTPQSPK-PSC????????????????????????????????????????????????????????????????????????????TTTTTT?
		Betula_pendula_46                    ??????????LKHRNDAGCQAKGFYTFDAFIAAAKSF--SGFATTGDTDTRKREIAAFLAQTSHETTGGWESAPDGPYAWGYCYLKEQ-----NPGS-YCSSDKT-----YPCASGKQYYGRGPIQIS-----------WNYNYGRCGKAIGVDLLNNPDRVSTDAVISFKTAIWFWMTPQSPK-PSCHDVITGKWKPSDADKSANRNAGYG????????????????????????????????????????????????????TTTTTT?
		Betula_pendula_52                    IISASLFDQFLKYRNDGRCKSNGFYTYNAFIAAARSF--GAFGTNGDVNTRKREVAAFLAQTSHETTGGWPSAPDGPYAWGYCFITET-----N-KADYCTPSKE-----WPCAAGKQYYGRGPIQLT-----------HNYNYGQAGKAIGSGLLNNPDLVATDATISFKTALWFWMTPQGNK-PSSHDVIIGKWTPSATDMSAGRVAGYGVITNIIN?????????????????????????????????????????????TTTTTT?
		Betula_pendula_53                    ?????????????????????????????????????????????GDDTTRKREIAAFLAQTSHETTGGWASAPDGPYAWGYCFITET-----N-PADYCTPSTE-----WPCASGKQYYGRGPIQLT-----------HNYNYGPAGKAIGADILNNPDLVATDAITSFKTAIWFWMTPQGNK-PSSHDVIIGQWTPSAADTSAGRVPGYGVITNIINGGLECG--HGADDRVAD-RIGFYKRYCDLLG?????VSYGDNLDC?TTTTTT
		Betula_pendula_54                    ????????????????????????????????????F--GAFGTNGDVTTRKREVAAFLAQTSHETTGGWANAPDGPYAWGYCFVSEN-----N-KADYCSPSKQ-----YPCAAGKKYYGRGPIQLT-----------YNYNYGQAGKAIGSNLLANPDLVAIDATISFKTALWFWMTPQGNK-PSSHDVITGKWKPTAADASAGRLPGYGLITNIINGGLECG--RGPNNRVAD-RIGFFKRYCDIMG?????VSYGNN????TTTTTT
		Betula_pendula_55                    ???????????????????????FYTYNAFIAAARSF--GAFGTNGDVTTRKREVAAFLAQTSHETTGGWANAPDGPYAWGYCFVSEN-----N-KADYCSPSRQ-----YPCAPGKKYYGRGPIQLT-----------YNYNYGQAGKAIGAGLLANPDLVATDAIISFKTALWFWMTPQGNK-PSSHDVITGKWKPTVADSSAGRLPGYGLITNIINGGLECG--RGADNRVAD-RIGFFKRYCDILG?????VSYGN?????TTTTTT
		Brassica_napus_22                    IVTQAFFNGIINQAGGG-CAGKNFYTRDSFINAANTF--PNFANS????VTRREIATMFAHFTHETG?????????????HFCYIEEING----ASRDYCDEN-N---RQYPCAPGKGYFGRGPIQLS-----------WNYNYGACGQSLNLNLLGQPELVSSNPTVAFRTGLWFWMNS????????????????????VRPVLN--QGFGATIRAING-MECN--GGNSGAVNA-RIRYYRDYCGQLG?????VDPGPNLSCTAATA?T
		Burkholderia_gladioli_2              ?LSRATFEQMFPT???????RNSFYTYDGLVGALKSY--PDFAGEASQDVRKQEIAAFLANVSHETG?????????????GLVYIRESNQ-ANWN--SYCSSGN--------CG-GKQYYGRGPMQLS-----------WDYNYKAAGDALGLNLLGNPDWVATDATISWATAIWFWMTQSGAG-T????????????MTPHQAMASGRGFGETIRSINGSLECN--GRNPAQVQS-RVDAYKRFA??????????????????ATAT?A?
		Cynodon_dactylon_31                  LVSERLYNSLFLHKDDPACPAKGFYTYSSFIQAARAF--PKFAGTGDLATRKRELAAFFAQISHETTGGWATAPDGPYSWGLCYKEEI-----RPASNYCDATDK----KWPCYPAKSYHGRGPIQLS-----------WNFNYGPAGQALGFDGLRNPEIVANCSDTAFRTALWFWMTPRRPK-PSCHEVMVGEYRPIAVDVAGNRMPGFGLVTNIVNGGLECN--RTDDARVNN-RIGFYRRYCQIFN?????VDTGPNLDTTTTTTTT
		Glycine_max_51                       LISSSLFDQMLKYRNDGRCSGHGFYRYDAFIAAAGSF--NGFGTTGDDNTRKKEIAAFLAQTSHETTGGWASAPDGPYAWGYCFINEQ-----N-QATYCDG-GN-----WPCAAGKKYYGRGPIQLT-----------HNYNYGQAGKALGLDLINNPDLVATDATVSFKTALWFWMTAQGNK-PSSHDVITGRWTPSSADSSAGRAPGYGVITNIINGGLECG--HGQDNRVQD-RIGFYRRYCQMMG?????ISPGDNLDCTTTTTTT
		Nicotiana_tabacum_43                 IISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSF--PGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQ-----GSPGDYCTPSGQ-----WPCAPGRKYFGRGPIQIS-----------HNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSALWFWMTPQSPK-PSCHDVIIGRWQPSSADRAANRLPGFGVITNIINGGLECG--RGTDSRVQD-RIGFYRRYCSILG?????VSPGDNLDCTTTTTTT
		Nicotiana_tabacum_49                 IVTNDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSF--PGFGTSGDDTARRKEIAAFFGQTSHETTGGSLSA--EPFTGGYCFVRQN?????????????????????????DQSDRYYGRGPIQLT-----------NQNNYEKAGNAIRQDLVNNPDLVATDATISFKTAIWFWMTPQDNK-PSSHDVIIGSWTPSAADQSANRAPGYGVITNIINGGIECG--VGPNAAVED-RIGYYRRYCGMLN?????VAPGDNLDCTTTATTT
		Nocardiopsis_prasina_7               VVSEAQFNQMFPN???????RNPFYTYSGLTTALSSY--PGFTNTGSVEVQRREAAAFLANVSHETG?????????????GLVYIKEINE-DNYP--HYCDLSQP---FGCPAG-QSAYYGKGPIQLA-----------WNYNYKAAGDALGIDLLNNPYLVEQDASIAWRTGLWFWNTQSGAG-T????????????MSGHTAIVDGHGFGESIRSINGSIECN--GGNPGQVQS-RINTFTQFTQILG?????TTTGSNLSCATAT?AT
		Oryza_japonica_26                    ?????FEELFAHRNDRSLAHAAGFWDYHAFITAAALFEPRGFGTTGGKEVGMKEVAAFLGHVGAKTSCGYSVATGGPLAWGLCYNHELSP-----SQSYCDNSNEL----YPCVEGVEYYGRGALPVY-----------WNYNYGIIGQGIKQDLLNHPELLEQNATLAFEAAIWRWMTPMKRKQPSAHDVFVGNWKPTKNDTLSKRYPGFGATMNILYGDLICG--QG-SIDKMNVIVSHYQHYLDLMGVGSDKAGDN--LDCTTTTTTA
		Oryza_sativa_20                      VVTEAFFNGIKNQAPNG-CAGKNFYTRQSFLNAAHSY--SGFARDRTNDDSKREIAAFFAHVTHETG?????????????HMCYINEING----ASMDYCDKN-N---KQWPCQPGKKYYGRGPLQIS-----------WNYNYGPAGQNIGFDGLRDPDRVAQDPTISFKTALWFWMNN????????????????????VHQVML--QGFGATIRAINGALECN--GKNPGAVNA-RVNYYKDYCRQFG?????VDPGGNLYCTTATA?T
		Oryza_sativa_21                      VVTEAFFNGIKNQAPNG-CAGKSFYTRQSFLNAARSY--SGFANDRTNDDSKREIAAFFAHVTHETG?????????????HMCYINEING----ANMDYCDKS-N---KQWPCQPGKKYYGRGPLQIS-----------WNFNYGPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWMNN????????????????????VHQVMS--QGFGATIRAINGALECN--GKNPGAVNA-RVNYYKDYCRQFG?????VSPGGNLYCTTATA?T
		Oryza_sativa_33                      ???EQLYASLFLHKDDAACPARGFYTYASFVRAATKF--PRFAATGCADARKREVAAFLAQISHETTGGWATAPERPYAWGLCYKEEI-----NTAAQLLRTADKQSYKQWLCYPGKSYHGQGPIQIS-----------WNFNYGPAGQALGFDRLRNPEIVANCSDIAFQTALWFWMTPRDTK-PSCHHVMVGEYRPGPADVAANRTAGFGLVTNIVNSGLECN--RAGDARVNN-RIGFYRRYCQVLG?????VDT??????TTTTTTT
		Oryza_sativa_37                      IVSRSLFDQMLLHRNDAACPAKNFYTYDAFVAAANAF--PSFATTGDAATRKREVAAFLAQTSHETTGGWATAPDGPYSWGYCFKEENNG---NVGSDYCVQSSQ-----WPCAAGKKYYGRGPIQIS-----------YNYNYGPAGQAIGSNLLSNPDLVASDATVSFKTAFWFWMTPQSPK-PSCHAVMTGQWTPNGNDQAAGRVPGYGVVTNIINGGVECG--HGADSRVAD-RIGFYKRYCDMLG?????VSYGANLDCTTTTTTT
		Oryza_sativa_38                      ?????LFDQMLLHRNDQACAAKGFYTYDAFVAAANAY--PDFATTGDADTCKREVAAFLAQTSHETTGGWPTAPDGPYSWGYCFKEENNG---NA-PTYCEPKPE-----WPCAAGKKYYGRGPIQIT-----------YNYNYGPAGQAIGSDLLNNPDLVASDATVSFKTAFWFWMTPQSPK-PSCHAVITGQWTPSADDQAAGRVPGYGEITNIINGGVECG--HGADDKVAD-RIGFYKRYCDMLG?????VSYGDNLDCTTTTTTT
		Oryza_sativa1BAA9_32                 IVSEQLYASLFLHKDDAACPARGFYTYASFVRAATRF--PRFAATGCADARKREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEI-----NPQSSYCDATDK----QWPCYPGKSYHGRGPIQISCHQRNVCMMMSRNFNYGPAGQALGFDGLRNPEIVANCSDIAFQTALWFWMTPRDTK-PSCHQVMVGEYRPGPADVAANRTAGFGLVTNIVNGGLECN--RAGDARVNN-RIGFYRRYCQVLG?????VDVGPNLDCTTTTTTT
		Persea_americana_42                  LISQSVFNQMLKHRNDAACQAKGFYTYNAFIAAANSF--NGFASVGDTATRKREIAAFLAQTSHETTGGWATAPDGPYAWGYCFLKEQ-----GNPPDYCVPTAQ-----WPCAPGKKYYGRGPIQIS-----------YNYNYGPAGRAIGYDLINNPDAVATDPVISFKTALWFWMTPQSPK-PSCHNVITGRWTPSAADRAAGRLPGYGVITNIINGGIECG--KGFNDKVAD-RIGFYKRYCDLLG?????VSYGSNLDCTTTTTTT
		Phaseolus_vulgaris_12                IVTADFFNGIIDQADSG-CAGKNFYTRDAFLSALNSY--TDFGRVGSEDDSKREIAAAFAHFTHETG?????????????HFCYIEEIDG----ASKDYCDEESI---AQYPCSSSKGYHGRGPIQLS-----------WNFNYGPAGSANNFDGLGAPETVSNDVVVSFKTALWYWMQH????????????????????VRPVIN--QGFGATIRAINGALECD--GANPTTVQA-RVNYYTEYCRQLG?????VATGDNLTCTTATA?T
		Phaseolus_vulgaris_47                LISRSTFDQMLKHRNDGACPAKG-YTYDAFIAAAKAY--PSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRER-----NPST-YCSATPQ-----FPCAPGQQYYGRGPIQIS-----------WNYNYGQCGRAIGVDLLNKPDLVATDSVISFKSALWFWMTAQSPK-PSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECG--RGQDSRVQD-RIGFFKRYCDLLG?????VGYGNNLDCTTTTTTT
		Phytophthora_infestans_1             ????????????????????????YNFNGLVDAASKY--SEFANTGNDDNDKRELAAFLAQTAHECD?????????????SFKAAEEYAR-DTYSVWQYCDNAT----YTCAPG-RR-YHGRGPIQLS-----------WNYNYYNAGEALGIDLLNNPDIVATDTTVTWMTALWYWMTPHGG---????????????RVIHDIVAGENGFAQSTDIINGGLECGPDAPNTSNEQQ-RITYFTKMCEALG?????VEPLGATSC?TAT?AT
		Picea_glauca_9                       IISQSFFNGLAGGAGSS-CEGKGFYTYNAFIAAANAF--SGFGTTGSNDVKKRELAAFFANVMHETG?????????????GLCYINEKNP-----PMKYCQSS-----STWPCTSGKSYHGRGPLQLS-----------WNYNYGAVGKSIGFDGLNNPEKVGKDPTTSSKTAVWFWMKNR??????????????????NCHSAITSGKGLGGTIKAINS-MECN--GGNSGEVNS-RVNYYKKICSQLG?????VDPGANVSCTTATA?T
		Pinus_strobus_36                     IISEDVFHQFLKHRNDDACSAKGFYTYSAFIAAANSF--PDFGNIGDQDSRKRELAAFFGHTSQETTGGWPTAPDGPYAWGYCFKDQV?????????????????????????NSTDRYRGRGPIQLT-----------GDYNYKAAGNALGYDLINNPDLVATDATVSFKTAVWFWMTAQSPK-PSCHDVILGRLTPSVTDTAAGRVAGYGMLTDIINGGPECG--TGTISDVQQGRIGFYQRYCKMLG?????VDVGSNLDYTTTATTT
		Pisum_sativum_50                     LVPSSLFDQMLKYRNDGRCAGHGFYTYDAFIAAARSF--NGFGTTGDDNTKKKELAAFLAQTSHETTGGWPTAPDGPYAWGYCFVSEQ-----NTQEVYCSP-KD-----WPCAPGKKYYGRGPIQLT-----------HNYNYGLAGQAIKEDLINNPDLLSTNPTVSFKTAIWFWMTPQANK-PSSHDVITGRWTPSAADSSAGRVPGYGVITNIINGGIECG--HGQDNRVDD-RVGFYKRYCQIFG?????VDPGGNLDCTTTTTTT
		Poa_pratensis_39                     ???QSLFEQMLLHRNDAACLAKGFYTYNAFIAAANSF--AGFGTTGSTDVRKREVAAFLAQTSHETTGGWPTAPDGPYSWGYCFKQEQ-----GATSDYCSPSSQ-----WPCAPGKKYFGRGPIQIS-----------YNYNYGPAGQAIQTDLLNNPDLVATDPTVSFKTALWFWMTAQSPK-PSSHAVITGQWSPSSADQAAGRVPGYGVITNIINGGLECG--KGQDNRVAD-RIGFYKRYCDLLG?????VSYGNNLDCTTTTTTT
		Saccharum_officinale_19              VVTDAFFNGIKNQAGNG-CEGKNFYTRSAFLSAADSY--KGFGGG--SVEGKREIAAFFAHVTHETG?????????????HFCYISEIN-----KNNAYCDSS-N---RQWPCAAGQKYYGRGPLQIS-----------WNYNYGPAGRDIGFNGLGDPNRVAQDAVIAFKTALWFWTNN????????????????????VHRVMS--QGFGATIRAINGALECN--GNNPAQMNA-RVGYYKQYCQQLG?????VDPGPNLTCTTATA?T
		Secale_cereale_40                    IISQSLFDQMLLHRNDAACLAKGFYNYGAFIAAANSF--SAFATTGGTDVRKREVAAFLAQTSHETTGGWPTAPDGPYSWGYCFNQER-----GAPSDYCSPSSQ-----WPCAPGKKYFGRGPIQIS-----------YNYNYGPAGRAIGTDLLNNPDLVATDATVSFKTALWFWMTPQSPK-PSSHDVITGRWSPSGADQAAGRVPGYGVITNIINGGLECG--RGQDARVAD-RIGFYKRYCDLLG?????VSYGHNLDCTTTTTTT
		Streptomyces_coelicolor_4            VVSEAQFDQMFPS???????RNSFYTYSGLTAALSAY--PGFSNTGSDTVKKQEAAAFLANVGHETG?????????????GLVYVVEQNT-ANYP--HYCDASQP---YGCPAG-NDKYYGRGPVQLS-----------WNFNYKAAGDALGIDLLNNPDLVQNDSAVAWKTGLWYWNTQTGPG-T????????????MTPHDAMVNGAGFGETIRSINGSLECD--GGNPGQVQS-RIDNYERFTQLLG?????VEPGGNLSCATAT?AT
		Streptomyces_griseus_8               VVSEAQFNQMFPN???????RNAFYTYKGLTDALSAY--PAFAKTGSDEVKKREAAAFLANVSHETG?????????????GLFYIKEVNE-ANYP--HYCDTTQS---YGCPAG-QAAYYGRGPIQLS-----------WNFNYKAAGDALGINLLANPYLVEQDPAVAWKTGLWYWNSQNGPG-T????????????MTPHNAIVNNAGFGETIRSINGALECN--GGNPAQVQS-RINKFTQFTQILG?????TTTGPNLSCATAT?AT
		Streptomyces_lavendulae_3            LVSEAQFKQMFPK???????RNAFYTYKGLVAALKAY--PGFAGTGSAEVRKQEAAAFLANVAHETG?????????????GLVYVVEQNT-ANYP--HYCDRSRP---YGCPAG-QAAYYGRGPLQIS-----------WNFNYKAAGDALGIDLLHNPSLVQKDAAVSWKTGLWYWNTQRGPG-T????????????MTPHEAMVNHRGFGQTIRSINGALECD--GHNPAQVQS-RVANYQRFTKILG?????VAPGGNLSCATAT?AT
		Streptomyces_olivaceoviridis_5       VVTEAQFNQMFPN???????RNSFYSYSGLTAALSAY--PGFANTGSDTTKKQEAAAFLANVSHETG?????????????GLVHVVEQNQ-ANYP--HYCDWSRP---YGCPAG-QAAYYGRGPIQLS-----------WNFNYKAAGDALGIDLLNSPWLVERDSAVAWKTALWYWNTQTGPG-T????????????MTPHNAMVNGAGFGQTIRSINGSLECD--GKNPAQVQS-RVNNYQRFTQILG?????VSPGGNLYCATAT?AT
		Streptomyces_thermoviolaceus_6       VVSEAQFNQMFPN???????RNPFYTYQGLVDALSAF--PGFANTGDDTTKKQEAAAFLANVNHETG?????????????GLQYVVEQNT-ANYP--AYCDWSQP---YGCPAG-QDAYYGRGPIQLS-----------WNFNYKAAGDAIGVDLLNNPWLVENDPAIAWKTGLWYWNTQSGPG-T????????????MTPHDAMVNHAGFGQTIRSINGSLECD--GRNPAQVQS-RVDAYQRFTSILG?????VAPGDNLYCATAT?AT
		Triticum_aestivum_24                 VVTDAFFDGIKSQAADGGCPGKSFYTRQFFLDGAQAN--PDFGKGGTSDDGKREIAAFFAHFTHETG?????????????YMCYIEEKDG----ASQNYCDTN-Y---PLWPCTSGKAYYGRGPLQLT-----------WNYNYGAAGQKLGFNGLDNPEKVAQDPALTFQAAFWFWMTN????????????????????VHQVVP--QGFGETSRKINS-GECN--GGNAPAMNA-RANYYVEYCKQFG?????VDPGNNLTCTTATA?T
		Triticum_aestivum_41                 IISQSLFDQMLLHRNDAACLAKGFYNYGAFVAAANSF--SGFATTGSTDVKKREVAAFLAQTSHETTGGWPTAPDGPYSWGYCFNQER-----GATSDYCTPSSQ-----WPCAPGKKYFGRGPIQIS-----------HNYNYGPAGQAIGTDLLNNPDLVASDATVSFKTALWFWMTPQSPK-PSSHDVITGRWSPSGADQAAGRVPGYGVITNIINGGLECG--RGQDGRVAD-RIGFYKRYCDLLG?????VSYGDNLDCTTTTTTT
		Vigna_sesquipedalis_48               LIPRATFDQMLKHRNDGACPARGFYTYDAFIAAARAF--PSFGNTGDTATRKREIAAFLGQTSHETTGGWPSAPDGPYAWGYCFVREQ-----NPSA-YCSPTPQ-----FPCASGQQYYGRGPIQIS-----------WNYNYGQCGNAIGVDLINNPDLVATDPVVSFKSAIWFWMTPQSPK-PSSHDVITSQWTPSAADVAAGRLPGYGTVTNIINGGLECG--RGQDSRVED-RIGFFKRYCDLFG?????VGYGNNLDCTTTTTTT
		Vigna_unguiculata_13                 IVTDAFFNGIIDQADSG-CVGKSFYARDAFLSALDSY--TDFGRVGSEDDSKREIAAAFAHFTHETG?????????????HFCYIEEIDG----ASKDYCDEDSI---AQYPCSSSRGYT-VVPIQLS-----------WNFNYGPAGEANNFDGLGPPETVSNDVVVSFKTALWYWMQH????????????????????VRPVIN--QGFAATIRAINGQLECD--GANPSTVQA-RVNYYTEYCRQLG?????VDTGDNLTCTTATA?T
		Zea_mays_17                          VVTSSFFNGIKNQAGSG-CEGKNFYTRSAFLSAVKGY--PGFAHGGSQVQGKREIAAFFAHATHETG?????????????HFCYISEIN-----KSNAYCDPT-K---RQWPCAAGQKYYGRGPLQIS-----------WNYNYGPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWMNS????????????????????VHGVVP--QGFGATTRAMQRALECG--GNNPAQMNA-RVGYYRQYCRQLG?????VDPGPNLTCTTATA?T
		Zea_mays_18                          VVTDAFFNGIKNQAGSG-CEGKNFYTRSAFLSAVNAY--PGFAHGGTEVEGKREIAAFFAHVTHETG?????????????HFCYISEIN-----KSNAYCDAS-N---RQWPCAAGQKYYGRGPLQIS-----------WNYNYGPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWMNN????????????????????VHGVMP--QGFGATIRAINGALECN--GNNPAQMNA-RVGYYKQYCQQLR?????VDPGPNLICTTATA?T
	;
END;

BEGIN CODONS;
CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;