#NEXUS [written Fri Sep 29 11:38:10 BST 2017 by Mesquite version 3.31 (build 859) at Fabio-HP/192.168.1.13] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=26; TAXLABELS Diplodia_africana_BL19 Diplodia_africana_CAD014 Diplodia_olivarum_BL97 Diplodia_olivarum_CAD019 Diplodia_fraxini_CBS136010 Diplodia_fraxini_CBS136011 Diplodia_mutila_CBS136014 Diplodia_mutila_CAA507 Diplodia_rosulata_CBS116470 Diplodia_rosulata_CBS116472 Diplodia_malorum_CBS112554 Diplodia_cupressi_CBS261.85 Diplodia_cupressi_CAA028 Diplodia_corticola_CBS112549 Diplodia_corticola_CAA691 Diplodia_corticola_BL36 Diplodia_eriobotryicola_CBS140851 Diplodia_insularis_CBS140350 Diplodia_intermedia_CAA491 Diplodia_intermedia_CAA147 Diplodia_sapinea_CMW190 Diplodia_sapinea_CBS393.84 Diplodia_sapinea_CBS109727 Diplodia_scrobiculata_CMW30223 Diplodia_seriata_CAA634 Diplodia_seriata_CAA636 ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=864; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = ?; MATRIX Diplodia_africana_BL19 GCACCCATGGATGCCTTCCTCATCCTAGCTTGTCCTCACATTGGCATCAT Diplodia_africana_CAD014 GCACCCATGGATGCCTTCCTCATCCTAGCTTGTCCTCACATTGGCATCAT Diplodia_olivarum_BL97 GCACCCATGGATGCCTTCCTCATCCTAGCTTGTCCTCACATTGGCATCAT Diplodia_olivarum_CAD019 GCACCCATGGATGCCTTCCTCATCCTAGCTTGTCCTCACATTGGCATCAT Diplodia_fraxini_CBS136010 GCACCTATGGATGCCTTCCTCATCCTAGCTTGTCCTCACATTGGCATCAT Diplodia_fraxini_CBS136011 GCACCTATGGATGCCTTCCTCATCCTAGCTTGTCCTCACATTGGCATCAT Diplodia_mutila_CBS136014 GCACCTATGGATGCCTTCCTCACCCTAGCTTGTCCTCACATTGGCATCAT Diplodia_mutila_CAA507 GCACCTATGGATGCCTTCCTCACCCTAGCTTGTCCTCACATTGGCATCAT Diplodia_rosulata_CBS116470 GCACCTATGGATGCCTTCCTCACCCTAGCTTGTCCTCACATTGGCATCAT Diplodia_rosulata_CBS116472 GCACCTATGGATGCCTTCCTCACCCTAGCTTGTCCTCACATTGGCATCAT Diplodia_malorum_CBS112554 GCACCTATGGATGCCTTCCTCACCCTGGCTTGTCCTCACATTGGCATCAT Diplodia_cupressi_CBS261.85 GCACCTATGGATGCCTTCCTCACCCTAGCTTGTCCTCACATTGGCATCAT Diplodia_cupressi_CAA028 GCACCTATGGATGCCTTCCTCACCCTAGCTTGTCCTCACATTGGCATCAT Diplodia_corticola_CBS112549 GCGCCCATGGATGCCTTCCTCAACCTCGCGTGTCCTCACATTGGTATCAT Diplodia_corticola_CAA691 GCGCCCATGGATGCCTTCCTCAACCTCGCGTGTCCTCACATTGGTATCAT Diplodia_corticola_BL36 GCGCCCATGGATGCCTTCCTCAACCTCGCGTGTCCTCACATTGGTATCAT Diplodia_eriobotryicola_CBS140851 GCGCCTATGGATGTCTTCCTCAACTTGGCTTGTCCTCACATTGGCATCAT Diplodia_insularis_CBS140350 GCACCTATGGATGTCTTCCTCAACCTGGCTTGTCCTCACATTGGCATCAT Diplodia_intermedia_CAA491 GCGCCTATGGATGCCTTCCTCAACCTGGCTTGTCCTCACATCGGCATCAT Diplodia_intermedia_CAA147 GCGCCTATGGATGCCTTCCTCAACCTGGCTTGTCCTCACATCGGCATCAT Diplodia_sapinea_CMW190 GCGCCTATGGATGCCTTCCTCAACCTGGCTTGTCCTCACATTGGCATCAT Diplodia_sapinea_CBS393.84 GCGCCTATGGATGCCTTCCTCAACCTGGCTTGTCCTCACATTGGCATCAT Diplodia_sapinea_CBS109727 GCGCCTATGGATGCCTTCCTCAACCTGGCTTGTCCTCACATTGGCATCAT Diplodia_scrobiculata_CMW30223 GCGCCTATGGATGCCTTCCTCAACCTGGCTTGCCCTCACATTGGCATCAT Diplodia_seriata_CAA634 GCGCCTATGGATGGCTTCCTCAACCTGGCTTGTCCTCACATTGGCATCAT Diplodia_seriata_CAA636 GCGCCTATGGATGGCTTCCTCAACCTGGCTTGTCCTCACATTGGCATCAT Diplodia_africana_BL19 CAGTCGTGCGGACTATCTCAGCACCCTTGGATGGGACTTTGTCAACAACG Diplodia_africana_CAD014 CAGTCGTGCGGACTATCTCAGCACCCTTGGATGGGACTTTGTCAACAACG Diplodia_olivarum_BL97 CAGTCGTGCGGACTATCTCAGCACCCTTGGATGGGACTTTGTCAACAACG Diplodia_olivarum_CAD019 CAGTCGTGCGGACTATCTCAGCACCCTTGGATGGGACTTTGTCAACAACG Diplodia_fraxini_CBS136010 CAGTCGTGCGGACTATCTCAGTACCCTTGGATGGGACTTTGTCAACAACG Diplodia_fraxini_CBS136011 CAGTCGTGCGGACTATCTCAGTACCCTTGGATGGGACTTTGTCAACAACG Diplodia_mutila_CBS136014 CAGTCGTGCGGACTATCTCAGTACCCTTGGATGGGACTTTGTCAACAACG Diplodia_mutila_CAA507 CAGTCGTGCGGACTATCTCAGTACCCTTGGATGGGACTTTGTCAACAACG Diplodia_rosulata_CBS116470 CAGTCGTGCGGACTATCTTAGTACCCTTGGATGGGACTTTGTCAACAACG Diplodia_rosulata_CBS116472 CAGTCGTGCGGACTATCTTAGTACCCTTGGATGGGACTTTGTCAACAACG Diplodia_malorum_CBS112554 CAGTCGTGCGGACTATCTCAGGACCCTTGGATGGGACTTTGTCAACAACG Diplodia_cupressi_CBS261.85 CGATCGTGACAACTATCTCAGTACCCTTGGATGGGATCTTGTCCAGAATG Diplodia_cupressi_CAA028 CGATCGTGACAACTATCTCAGTACCCTTGGATGGGATCTTGTCCAGAATG Diplodia_corticola_CBS112549 CAGTCGCGAGAACTATCTCAGCACCCTTGGCTGGGAGTTTGTCAATACTG Diplodia_corticola_CAA691 CAGTCGCGAGAACTATCTCAGCACCCTTGGCTGGGAGTTTGTCAATACTG Diplodia_corticola_BL36 CAGTCGCGAGAACTATCTCAGCACCCTTGGCTGGGAGTTTGTCAATACTG Diplodia_eriobotryicola_CBS140851 CAGTCGTGAGAACTATCTCGACATTCTTGGATGGGAGTTCGTCGACAACG Diplodia_insularis_CBS140350 CAGTCGTGAGAGCTATCTCGACACCCTTGGATGGCAGTTCGTCGACAACG Diplodia_intermedia_CAA491 CAGCCGTGAGAACTATCTCAATACTCTTGGATGGGAGTTGGTCAACAACG Diplodia_intermedia_CAA147 CAGCCGTGAGAACTATCTCAATACTCTTGGATGGGAGTTGGTCAACAACG Diplodia_sapinea_CMW190 CAGCCGTGATAACTATCTCAACACTCTTGGGTGGGAGTTGGTCAACAACG Diplodia_sapinea_CBS393.84 CAGCCGTGATAACTATCTCAACACTCTTGGGTGGGAGTTGGTCAACAACG Diplodia_sapinea_CBS109727 CAGCCGTGATAACTATCTCAACACTCTTGGGTGGGAGTTGGTCAACAACG Diplodia_scrobiculata_CMW30223 CAGCCGTGCGAACTATCTCAACACTCTTGGATGGGAGTTGGTCAACAACG Diplodia_seriata_CAA634 CAGCCGTGCGAACTATCTCAACACTCTTGGGTGGGAGTTGGTCAACAACG Diplodia_seriata_CAA636 CAGCCGTGCGAACTATCTCAACACTCTTGGGTGGGAGTTGGTCAACAACG Diplodia_africana_BL19 GCAATGGCTGGGTGCTCGATCGTCGCTTCACTCCGAGCCCCGCCTCGCTC Diplodia_africana_CAD014 GCAATGGCTGGGTGCTCGATCGTCGCTTCACTCCGAGCCCCGCCTCGCTC Diplodia_olivarum_BL97 GCAATGGCTGGGTGCTCGATCGTCGCTTCACTCCGAGCCCCGCCTCGCTC Diplodia_olivarum_CAD019 GCAATGGCTGGGTGCTCGATCGTCGCTTCACTCCGAGCCCCGCCTCGCTC Diplodia_fraxini_CBS136010 GCAATGGCTGGGTGCTCGATCGTCGCTTCACTCCGAGCGCCGCCTCGCTC Diplodia_fraxini_CBS136011 GCAATGGCTGGGTGCTCGATCGTCGCTTCACTCCGAGCGCCGCCTCGCTC Diplodia_mutila_CBS136014 GCAATGGCTGGGTGCTCGATCGTCGCTTCACTCCGAGCGCTGCCTCGCTC Diplodia_mutila_CAA507 GCAATGGCTGGGTGCTCGATCGTCGCTTCACTCCGAGCGCTGCCTCGCTC Diplodia_rosulata_CBS116470 GCAACGGCTGGGTGCTCGATCGTCGCTTCACTCCGAGCGCTGCCTCGCTC Diplodia_rosulata_CBS116472 GCAACGGCTGGGTGCTCGATCGTCGCTTCACTCCGAGCGCTGCCTCGCTC Diplodia_malorum_CBS112554 GCAATGGCTGGGTGCTCGATCGTCGCTTCACTCCGAGCGCCGCCTCGCTC Diplodia_cupressi_CBS261.85 GCAATGGCTCACAGCTGGTTCGTAGCTTCACTCCGAGCGCTGCCTCCCTC Diplodia_cupressi_CAA028 GCAATGGCTCACAGCTGGTTCGTAGCTTCACTCCGAGCGCTGCCTCCCTC Diplodia_corticola_CBS112549 GCAGTGGCTGGCAGCTCAACCGTCGCTTCATTCCAGGCACAGACGACTTG Diplodia_corticola_CAA691 GCAGTGGCTGGCAGCTCAACCGTCGCTTCATTCCAGGCACAGACGACTTG Diplodia_corticola_BL36 GCAGTGGCTGGCAGCTCAACCGTCGCTTCATTCCAGGCACAGACGACTTG Diplodia_eriobotryicola_CBS140851 GCAGTAGCTGCCAGCTCAACCGTCGCTTTACTCCCGACACTGCATCTCTG Diplodia_insularis_CBS140350 GCAGTGGCTGGCAGCTCAACCGCCGCTTCATTCCTGGCACTGCATCTCTG Diplodia_intermedia_CAA491 GCAGTGGCTGGCAGCTCATCCGTCGCTTCATTCCCGACACTGCCTCCCTT Diplodia_intermedia_CAA147 GCAGTGGCTGGCAGCTCATCCGTCGCTTCATTCCCGACACTGCCTCCCTT Diplodia_sapinea_CMW190 GCAGTGGCTGGCAGCTCATCCGTCGCTTCATTCCCGACACTGCCTCCCTC Diplodia_sapinea_CBS393.84 GCAGTGGCTGGCAGCTCATCCGTCGCTTCATTCCCGACACTGCCTCCCTC Diplodia_sapinea_CBS109727 GCAGTGGCTGGCAGCTCATCCGTCGCTTCATTCCCGACACTGCCTCCCTC Diplodia_scrobiculata_CMW30223 GCAGTGGCTGGCAGCTCATCCGTCGCTTCATTCCCGACACTGCCTCCCTC Diplodia_seriata_CAA634 GCAGTGGCTGGCAGCTCATCCGTCGCTTCATTCCCGACACTGCCTCCCTC Diplodia_seriata_CAA636 GCAGTGGCTGGCAGCTCATCCGTCGCTTCATTCCCGACACTGCCTCCCTC Diplodia_africana_BL19 CCCCAGGGCTACCTCACCACCACGCTTTCGGTTGACGACATGGTGAAGTT Diplodia_africana_CAD014 CCCCAGGGCTACCTCACCACCACGCTTTCGGTTGACGACATGGTGAAGTT Diplodia_olivarum_BL97 CCCCAGGGCTACCTCACCACCACGCTTTCGGTTGACGACATGGTGAAGTT Diplodia_olivarum_CAD019 CCCCAGGGCTACCTCACCACCACGCTTTCGGTTGACGACATGGTGAAGTT Diplodia_fraxini_CBS136010 CCCCAGGGCTACCTCACCACCACGCTTTCGGTTGACGACATGGTGAAGTT Diplodia_fraxini_CBS136011 CCCCAGGGCTACCTCACCACCACGCTTTCGGTTGACGACATGGTGAAGTT Diplodia_mutila_CBS136014 CCCCAGGGCTATCTCACCACCACGCTTTCGGTTGACGACATGGTGAAGTT Diplodia_mutila_CAA507 CCCCAGGGCTATCTCACCACCACGCTTTCGGTTGACGACATGGTGAAGTT Diplodia_rosulata_CBS116470 CCCCAAGGCTACCTCAGCTCCACGCTTTCGGTTGACGAAATGGTGAAGTT Diplodia_rosulata_CBS116472 CCCCAAGGCTACCTCAGCTCCACGCTTTCGGTTGACGAAATGGTGAAGTT Diplodia_malorum_CBS112554 CCCCAAGGCTACCTCACCACCACGCTTTCGGTTGACGACATGGTGAAGTT Diplodia_cupressi_CBS261.85 CCTCCGGGCTACCTCACCACCACGCTTTCGGTGGACGACATGGTGAAGTA Diplodia_cupressi_CAA028 CCTCCGGGCTACCTCACCACCACGCTTTCGGTGGACGACATGGTGAAGTA Diplodia_corticola_CBS112549 CCCCAGGGCTACCTCACCACCACGTTGTCGGTCGACGACATGATTCAGTT Diplodia_corticola_CAA691 CCCCAGGGCTACCTCACCACCACGTTGTCGGTCGACGACATGATTCAGTT Diplodia_corticola_BL36 CCCCAGGGCTACCTCACCACCACGTTGTCGGTCGACGACATGATTCAGTT Diplodia_eriobotryicola_CBS140851 CCCCATGGTTACCTCACCACCACGGTTTCGGTTGACGACTTGGTGACGTT Diplodia_insularis_CBS140350 CCACATGGTTACCTCACCACCACGCTTTCGGTTGACGACTTGGTGACGTT Diplodia_intermedia_CAA491 CCCCATGGTTACCTCACCACTACGGTTTCGGTCGATGACTTGGTGACGTT Diplodia_intermedia_CAA147 CCCCATGGTTACCTCACCACTACGGTTTCGGTCGATGACTTGGTGACGTT Diplodia_sapinea_CMW190 CCCCATGGTTACCTCACCACCACGGTTTCGGTCGATGACTTGGTGACGTT Diplodia_sapinea_CBS393.84 CCCCATGGTTACCTCACCACCACGGTTTCGGTCGATGACTTGGTGACGTT Diplodia_sapinea_CBS109727 CCCCATGGTTACCTCACCACCACGGTTTCGGTCGATGACTTGGTGACGTT Diplodia_scrobiculata_CMW30223 CCCCATGGTTACCTCACCACCACGGTTTCGGTCGACGACTTGGTGACGTT Diplodia_seriata_CAA634 CCCCATGGTTATCTCACCACTACAGTTTCGGTCGACGACTTGGTGACGTT Diplodia_seriata_CAA636 CCCCATGGTTATCTCACCACTACAGTTTCGGTCGACGACTTGGTGACGTT Diplodia_africana_BL19 TGTTCGCGGTCGCGGCTATGGCATTCCCCCTTCGACCGCCGCTTCCAACG Diplodia_africana_CAD014 TGTTCGCGGTCGCGGCTATGGCATTCCCCCTTCGACCGCCGCTTCCAACG Diplodia_olivarum_BL97 TGTTCGCGGTCGCGGCTATGGCATTCCCCCTTCAACCGCCGCTTCCAACG Diplodia_olivarum_CAD019 TGTTCGCGGTCGCGGCTATGGCATTCCCCCTTCAACCGCCGCTTCCAACG Diplodia_fraxini_CBS136010 TGTTCGCGGTCGCGGCTATGGCATTCCCCCTTCGACCGCCGCTTCCAACG Diplodia_fraxini_CBS136011 TGTTCGCGGTCGCGGCTATGGCATTCCCCCTTCGACCGCCGCTTCCAACG Diplodia_mutila_CBS136014 TGTTCGCGGTCGCGGCTATGGCATTTCCCCTTCGACCGCCGCTTCCAACG Diplodia_mutila_CAA507 TGTTCGCGGTCGCGGCTATGGCATTTCCCCTTCGACCGCCGCTTCCAACG Diplodia_rosulata_CBS116470 TGTTCGCGGTCGCGGTTATGGCATTCCCCCTTCGACCGCCGCTTCCAACG Diplodia_rosulata_CBS116472 TGTTCGCGGTCGCGGTTATGGCATTCCCCCTTCGACCGCCGCTTCCAACG Diplodia_malorum_CBS112554 TGTTCGCGGTCGCGGTTATGGCATTCCCCCTTCGACTGCCGCTTTCAACG Diplodia_cupressi_CBS261.85 TGTTCGCGGTCGCGGTTACGGCATTCCTCCTCTGAGCACCGCTTCCAACG Diplodia_cupressi_CAA028 TGTTCGCGGTCGCGGTTACGGCATTCCTCCTCTGAGCACCGCTTCCAACG Diplodia_corticola_CBS112549 CGTTCGCAGTAACGGCTACGGTATTGCTGCCCAGACCGCCGCTTCTAGCG Diplodia_corticola_CAA691 CGTTCGCAGTAACGGCTACGGTATTGCTGCCCAGACCGCCGCTTCTAGCG Diplodia_corticola_BL36 CGTTCGCAGTAACGGCTACGGTATTGCTGCCCAGACCGCCGCTTCTAGCG Diplodia_eriobotryicola_CBS140851 TGTTCGCGGTCGTGGTTACGGCATTCCTTCTCAGACCGCCGCTTCCAACA Diplodia_insularis_CBS140350 TGTTCGCGGTCGTGGTTACGGCATTCCTGCTCAGACCGCCGCTTCCAACA Diplodia_intermedia_CAA491 CGTTCGCGGTCGTGGTTACGGCATTCCTGCTCAGACCGCCGCTTCCAACA Diplodia_intermedia_CAA147 CGTTCGCGGTCGTGGTTACGGCATTCCTGCTCAGACCGCCGCTTCCAACA Diplodia_sapinea_CMW190 CGTTCGCGGTCGTGGTTACGGCATTCCTGCTCAGACCGCCGCTTCCAACA Diplodia_sapinea_CBS393.84 CGTTCGCGGTCGTGGTTACGGCATTCCTGCTCAGACCGCCGCTTCCAACA Diplodia_sapinea_CBS109727 CGTTCGCGGTCGTGGTTACGGCATTCCTGCTCAGACCGCCGCTTCCAACA Diplodia_scrobiculata_CMW30223 CGTTCGCGGTCGTGGTTACGGCATTCCTGCTCAGACCGCCGCTTCCAACA Diplodia_seriata_CAA634 CGTTCGCGGTCGTGGCTACGGCATTCCTGCTCAGACCGCCGCTTCCAACA Diplodia_seriata_CAA636 CGTTCGCGGTCGTGGCTACGGCATTCCTGCTCAGACCGCCGCTTCCAACA Diplodia_africana_BL19 CTGGCAGCAGTACCAATGCTGGTGCTCCGGCTCTCACCATGGCAGCTCAG Diplodia_africana_CAD014 CTGGCAGCAGTACCAATGCTGGTGCTCCGGCTCTCACCATGGCAGCTCAG Diplodia_olivarum_BL97 CTGGCAGCAGTACCAATGCTGGTGCTCCGGCTCTCACCATGGCAGCTCAG Diplodia_olivarum_CAD019 CTGGGAGCAGTACCAATGCTGGTGCTCCGGCTCTCACCATGGCAGCTCAG Diplodia_fraxini_CBS136010 CTGGCAGCAGCACCAATGCTGGTGCCCCGGCTCTCACCATGGC------- Diplodia_fraxini_CBS136011 CTGGCAGCAGCACCAATGCTGGTGCCCCGGCTCTCACCATGGC------- Diplodia_mutila_CBS136014 TTGGCAGCAGCACCAATGCTGGTGCCCCGGCTCTCACCATGGCAGCTCAG Diplodia_mutila_CAA507 TTGGCAGCAGCACCAATGCTGGTGCCCCGGCTCTCACCATGGCAGCTCAG Diplodia_rosulata_CBS116470 CTGGCAGCAGCACCAATGCTGGTACCCCGGCTCTCACCATGGCAGCTCAG Diplodia_rosulata_CBS116472 CTGGCAGCAGCACCAATGCTGGTACCCCGGCTCTCACCATGGCAGCTCAG Diplodia_malorum_CBS112554 CTGGCAGCAGCACCAATGCTGGTGCCCCGGCTCTCACCATGGCAGCCCAG Diplodia_cupressi_CBS261.85 CTGGCAGCAGCACCAACGCTGGCGCCCCGACTCTCACCATGGCAGCTCAG Diplodia_cupressi_CAA028 CTGGCAGCAGCACCAACGCTGGCGCCCCGACTCTCACCATGGCAGCTCAG Diplodia_corticola_CBS112549 CTGGTAGCAGCAACAACACCGGCGGCTCAACTCTTGCCATGGCAGCCCAG Diplodia_corticola_CAA691 CTGGTAGCAGCAACAACACCGGCGGCTCAACTCTTGCCATGGCAGCCCAG Diplodia_corticola_BL36 CTGGTAGCAGCAACAACACCGGCGGCTCAACTCTTGCCATGGCAGCCCAG Diplodia_eriobotryicola_CBS140851 CTGGCAGCAGCAACACCGCTGGCGCCGCCACTCTCGCTATGGCAGCTCAG Diplodia_insularis_CBS140350 CTGGCAGCAGCAACAACGCTGGCGCCGCGACTCTCGCTATGGCAGCTCAG Diplodia_intermedia_CAA491 CTGGCAGCAGCAACAACGCTGGCGCTGCGACCCTCGCCATGGCAGCTCAG Diplodia_intermedia_CAA147 CTGGCAGCAGCAACAACGCTGGCGCTGCGACCCTCGCCATGGCAGCTCAG Diplodia_sapinea_CMW190 CTGGCAGCAGCAACAACGCTGGCGCCGCGACCCTCGCCATGGCAGCTCAG Diplodia_sapinea_CBS393.84 CTGGCAGCAGCAACAACGCTGGCGCCGCGACCCTCGCCATGGCAGCTCAG Diplodia_sapinea_CBS109727 CTGGCAGCAGCAACAACGCTGGCGCCGCGACCCTCGCCATGGCAGCTCAG Diplodia_scrobiculata_CMW30223 CTGGCAGCAGCAACAACGCTGGCGCCGCGACCCTCGCCATGGCAGCTCAG Diplodia_seriata_CAA634 CTGGCAGTAGCAACAACGCTGGCGCCGCGACCCTCGCCATGGCAGCTCAG Diplodia_seriata_CAA636 CTGGCAGTAGCAACAACGCTGGCGCCGCGACCCTCGCCATGGCAGCTCAG Diplodia_africana_BL19 CCGGTTCAGCCCACTCAG---------ACTGTTTTGCAGCCTGCTCAGCC Diplodia_africana_CAD014 CCGGTTCAGCCCACTCAG---------ACTGTTTTGCAGCCTGCTCAGCC Diplodia_olivarum_BL97 CCGGTTCAGCCCACTCAG---------ACTGTTTTGCAGCCTGCTCAGCC Diplodia_olivarum_CAD019 CCGGTTCAGCCCACTCAG---------ACTGTTTTGCAGCCTGCTCAGCC Diplodia_fraxini_CBS136010 -----------------------------------------TGCTCAGCC Diplodia_fraxini_CBS136011 -----------------------------------------TGCTCAGCC Diplodia_mutila_CBS136014 CCGGTTCAGCCCACTCAG---------ACTGTTTTGCAGCCTGCTCAGCC Diplodia_mutila_CAA507 CCGGTTCAGCCCACTCAG---------ACTGTTTTGCAGCCTGCTCAGCC Diplodia_rosulata_CBS116470 CCGGTTCAGCCCACTCAG---------ACTGTTTTGCAGCCTGCTCAGCC Diplodia_rosulata_CBS116472 CCGGTTCAGCCCACTCAG---------ACTGTTTTGCAGCCTGCTCAGCC Diplodia_malorum_CBS112554 CCGGTTCAGCCCACTCAG---------ACTGTTTTGCAGCCCGCTCAGCC Diplodia_cupressi_CBS261.85 CCGGCTCAGCCCACACAG---------ACTGCTTTCCAGCCTGCTCAGAC Diplodia_cupressi_CAA028 CCGGCTCAGCCCACACAG---------ACTGCTTTCCAGCCTGCTCAGAC Diplodia_corticola_CBS112549 CCGGTTCAGCCTGCTCAGCCTACTCAGGCTGCCGTCCCGCCGGCTCAAAC Diplodia_corticola_CAA691 CCGGTTCAGCCTGCTCAGCCTACTCAGGCTGCCGTCCCGCCGGCTCAAAC Diplodia_corticola_BL36 CCGGTTCAGCCTGCTCAGCCTACTCAGGCTGCCGTCCCGCCGGCTCAAAC Diplodia_eriobotryicola_CBS140851 CCGGTTCAGCTTGCTCAG---------ACTGTCTTTCAGCCTCCTCAGGC Diplodia_insularis_CBS140350 CCGGTTCAGCCTGCTCAG---------ACTGTCTTCCAGCCTCCCCAGCC Diplodia_intermedia_CAA491 CCGGTTCAGCCTGCGCAG---------ACTGTCTTTCAGCCTCCTCAGGC Diplodia_intermedia_CAA147 CCGGTTCAGCCTGCGCAG---------ACTGTCTTTCAGCCTCCTCAGGC Diplodia_sapinea_CMW190 CCGGTCCAGCCTGCGCAG---------ACTGTCTTCCAGCCTCCTCAGGC Diplodia_sapinea_CBS393.84 CCGGTCCAGCCTGCGCAG---------ACTGTCTTCCAGCCTCCTCAGGC Diplodia_sapinea_CBS109727 CCGGTCCAGCCTGCGCAG---------ACTGTCTTCCAGCCTCCTCAGGC Diplodia_scrobiculata_CMW30223 CCGGTCCAGCCTGCGCAG---------ACTGTCTTCCAGCCTCTTCAGGC Diplodia_seriata_CAA634 CCGGTTCAGCCTGCGCAG---------ACTGTCTTCCAGCCTCCTCAGGC Diplodia_seriata_CAA636 CCGGTTCAGCCTGCGCAG---------ACTGTCTTCCAGCCTCCTCAGGC Diplodia_africana_BL19 TACCCAGGCTACCGTTCAG------------------------------- Diplodia_africana_CAD014 TACCCAGGCTACCGTTCAG------------------------------- Diplodia_olivarum_BL97 TACCCAGGCTACCGTTCAG------------------------------- Diplodia_olivarum_CAD019 TACCCAGGCTACCGTTCAG------------------------------- Diplodia_fraxini_CBS136010 TACTCAGGCTACCGTTCAG------------------------------- Diplodia_fraxini_CBS136011 TACTCAGGCTACCGTTCAG------------------------------- Diplodia_mutila_CBS136014 TACCCAGGCTACCGTTCAG------------------------------- Diplodia_mutila_CAA507 TACCCAGGCTACCGTTCAG------------------------------- Diplodia_rosulata_CBS116470 TACCCAGGCTACCGTTCAG------------------------------- Diplodia_rosulata_CBS116472 TACCCAGGCTACCGTTCAG------------------------------- Diplodia_malorum_CBS112554 TACCCAGGCTACCGTTCAG------------------------------- Diplodia_cupressi_CBS261.85 TACCCAGGCTACCATTCAGGCACCTCAGCCGGCTCAGCCCATGCAGACTG Diplodia_cupressi_CAA028 TACCCAGGCTACCATTCAGGCACCTCAGCCGGCTCAGCCCATGCAGACTG Diplodia_corticola_CBS112549 TATCCAAGCTACCATCCAG------------------------------- Diplodia_corticola_CAA691 TATCCAAGCTACCATCCAG------------------------------- Diplodia_corticola_BL36 TATCCAAGCTACCATCCAG------------------------------- Diplodia_eriobotryicola_CBS140851 TACTCAGGCTACGGTCCAG------------------------------- Diplodia_insularis_CBS140350 TACTCAGGCTACGGTCCAG------------------------------- Diplodia_intermedia_CAA491 TACCCAGACTACTGTCCAG------------------------------- Diplodia_intermedia_CAA147 TACCCAGACTACTGTCCAG------------------------------- Diplodia_sapinea_CMW190 TACCCAGACTATGGTCCAG------------------------------- Diplodia_sapinea_CBS393.84 TACCCAGACTATGGTCCAG------------------------------- Diplodia_sapinea_CBS109727 TACCCAGACTATGGTCCAG------------------------------- Diplodia_scrobiculata_CMW30223 TACCCAGACTACGGTCCAG------------------------------- Diplodia_seriata_CAA634 TACCCAGACTACGGCCCAG------------------------------- Diplodia_seriata_CAA636 TACCCAGACTACGGCCCAG------------------------------- Diplodia_africana_BL19 ----CCAG-------------------------TTCAGGCGG-------- Diplodia_africana_CAD014 ----CCAG-------------------------TTCAGGCGG-------- Diplodia_olivarum_BL97 ----CCAG-------------------------TTCAGGCGG-------- Diplodia_olivarum_CAD019 ----CCAG-------------------------TTCAGGCGG-------- Diplodia_fraxini_CBS136010 ----CCAG-------------------------TTCAGGCGG-------- Diplodia_fraxini_CBS136011 ----CCAG-------------------------TTCAGGCGG-------- Diplodia_mutila_CBS136014 ----CCAG-------------------------TTCAGGCGG-------- Diplodia_mutila_CAA507 ----CCAG-------------------------TTCAGGCGG-------- Diplodia_rosulata_CBS116470 ----CCAG-------------------------TTCAGGCGG-------- Diplodia_rosulata_CBS116472 ----CCAG-------------------------TTCAGGCGG-------- Diplodia_malorum_CBS112554 ----CCAG-------------------------TTCAGGCGG-------- Diplodia_cupressi_CBS261.85 TTCTCCAGCCTGCCCAGGCTACCCAGGCTACTATTCAGGCAG-------- Diplodia_cupressi_CAA028 TTCTCCAGCCTGCCCAGGCTACCCAGGCTACTATTCAGGCAG-------- Diplodia_corticola_CBS112549 ----CCAG-------------------------CTCAGCAAGCTCAGCAA Diplodia_corticola_CAA691 ----CCAG-------------------------CTCAGCAAGCTCAGCAA Diplodia_corticola_BL36 ----CCAG-------------------------CTCAGCAAGCTCAGCAA Diplodia_eriobotryicola_CBS140851 ----GCAG-------------------------CTCAGGCGG-------- Diplodia_insularis_CBS140350 ----CCAG-------------------------CTCAGGCGG-------- Diplodia_intermedia_CAA491 ----CCGG-------------------------CTCAGCCGG-------- Diplodia_intermedia_CAA147 ----CCGG-------------------------CTCAGCCGG-------- Diplodia_sapinea_CMW190 ----CCGG------------------------------------------ Diplodia_sapinea_CBS393.84 ----CCGG------------------------------------------ Diplodia_sapinea_CBS109727 ----CCGG------------------------------------------ Diplodia_scrobiculata_CMW30223 ----CCGG-------------------------TCCAGCCGG-------- Diplodia_seriata_CAA634 ----CCGG-------------------------CTCAGCCGG-------- Diplodia_seriata_CAA636 ----CCGG-------------------------CTCAGCCGG-------- Diplodia_africana_BL19 -CTCAGCCGG---------GCTCTCACTT---------TGCTCAC----- Diplodia_africana_CAD014 -CTCAGCCGG---------GCTCTCACTT---------TGCTCAC----- Diplodia_olivarum_BL97 -CTCAGCCGG---------GCTCTCACTT---------TGCTCAC----- Diplodia_olivarum_CAD019 -CTCAGCCGG---------GCTCTCACTT---------TGCTCAC----- Diplodia_fraxini_CBS136010 -CTCAGCCGG---------GCTCTCACTT---------TGCTCAC----- Diplodia_fraxini_CBS136011 -CTCAGCCGG---------GCTCTCACTT---------TGCTCAC----- Diplodia_mutila_CBS136014 -CTCAGCCGG---------GCCCTCACTT---------TGCTCAC----- Diplodia_mutila_CAA507 -CTCAGCCGG---------GCCCTCACTT---------TGCTCAC----- Diplodia_rosulata_CBS116470 -CTCAGTCGG---------GCCCTCACTT---------TGCTCAC----- Diplodia_rosulata_CBS116472 -CTCAGTCGG---------GCCCTCACTT---------TGCTCAC----- Diplodia_malorum_CBS112554 -CTCAGCCGG---------GCTCTCACTT---------TGCTCAC----- Diplodia_cupressi_CBS261.85 -CTCAGCCGGCTCAGCCGAGCCCTCACTT---------GGCTCAC----- Diplodia_cupressi_CAA028 -CTCAGCCGGCTCAGCCGAGCCCTCACTT---------GGCTCAC----- Diplodia_corticola_CBS112549 GCTCAGCCGA---------GCTCTAACCTCACTCAGATCGCTCCCACGTA Diplodia_corticola_CAA691 GCTCAGCCGA---------GCTCTAACCTCACTCAGATCGCTCCCACGTA Diplodia_corticola_BL36 GCTCAGCCGA---------GCTCTAACCTCACTCAGATCGCTCCCACGTA Diplodia_eriobotryicola_CBS140851 -CTCAGGCGG---------GCTC--ACTT-------GTGGTTCAC----- Diplodia_insularis_CBS140350 -CTCAGGCGG---------CCTC--ACTT-------GTGACTCAC----- Diplodia_intermedia_CAA491 -CTCAGCCGG---------GCTC--ACTT-------GTGGCTCAC----- Diplodia_intermedia_CAA147 -CTCAGCCGG---------GCTC--ACTT-------GTGGCTCAC----- Diplodia_sapinea_CMW190 -CTCAGCCGG---------GCTC--ACTT-------GTGGCTCAC----- Diplodia_sapinea_CBS393.84 -CTCAGCCGG---------GCTC--ACTT-------GTGGCTCAC----- Diplodia_sapinea_CBS109727 -CTCAGCCGG---------GCTC--ACTT-------GTGGCTCAC----- Diplodia_scrobiculata_CMW30223 -CTCAGCCGG---------GCTC--ACTT-------GTGGCTCAC----- Diplodia_seriata_CAA634 -TTCAGCCGG---------GCTC--ACTT-------GTGGCTCAC----- Diplodia_seriata_CAA636 -TTCAGCCGG---------GCTC--ACTT-------GTGGCTCAC----- Diplodia_africana_BL19 ----------CCGATTCATCAGTC--TGCCGCTCTCT--CCGACCAGC-- Diplodia_africana_CAD014 ----------CCGATTCATCAGTC--TGCCGCTCTCT--CCGACCAGC-- Diplodia_olivarum_BL97 ----------CCGATTCATCAGTC--TGCCGCTCTCT--CCGACCAGC-- Diplodia_olivarum_CAD019 ----------CCGATTCATCAGTC--TGCCGCTCTCT--CCGACCAGC-- Diplodia_fraxini_CBS136010 ----------CCGATTCATCAGTC--TGTCGCTCTCT--CCGACCAGC-- Diplodia_fraxini_CBS136011 ----------CCGATTCATCAGTC--TGTCGCTCTCT--CCGACCAGC-- Diplodia_mutila_CBS136014 ----------CTGATTCATCAGTC--TGTCGCTCTCT--CCGAACAGC-- Diplodia_mutila_CAA507 ----------CTGATTCATCAGTC--TGTCGCTCTCT--CCGAACAGC-- Diplodia_rosulata_CBS116470 ----------CTGATTCATCAGTC--TGTCGCTCTCT--CCGAACAGC-- Diplodia_rosulata_CBS116472 ----------CTGATTCATCAGTC--TGTCGCTCTCT--CCGAACAGC-- Diplodia_malorum_CBS112554 ----------CCGATTCATCAGTC--TGTCGCTCTCT--CCGGACAGC-- Diplodia_cupressi_CBS261.85 ----------CTGATTCACCAGTC--TGTCGCTCTCT--CCGGACTGC-- Diplodia_cupressi_CAA028 ----------CTGATTCACCAGTC--TGTCGCTCTCT--CCGGACTGC-- Diplodia_corticola_CBS112549 CCAGATGCCTCACGTCCATCAGCCGCAGCCCTTCACCTTCTGGACTGCTC Diplodia_corticola_CAA691 CCAGATGCCTCACGTCCATCAGCCGCAGCCCTTCACCTTCTGGACTGCTC Diplodia_corticola_BL36 CCAGATGCCTCACGTCCATCAGCCGCAGCCCTTCACCTTCTGGACTGCTC Diplodia_eriobotryicola_CBS140851 ----------CATATCAGTGAGTC--AGCTCTTGTCG--CTGGACTAC-- Diplodia_insularis_CBS140350 ----------CATGTCAGTGAGTC--AGCTGTTATCG--CTGGACTAC-- Diplodia_intermedia_CAA491 ----------CCTGTCACCGAGTC--GGCTCTGGTCT--CTGCCCTAC-- Diplodia_intermedia_CAA147 ----------CCTGTCACCGAGTC--GGCTCTGGTCT--CTGCCCTAC-- Diplodia_sapinea_CMW190 ----------CCTGTCACTGACTC--GGCTCTGCTCT--CTGCCCTAC-- Diplodia_sapinea_CBS393.84 ----------CCTGTCACTGACTC--GGCTCTGCTCT--CTGCCCTAC-- Diplodia_sapinea_CBS109727 ----------CCTGTCACTGACTC--GGCTCTGCTCT--CTGCCCTAC-- Diplodia_scrobiculata_CMW30223 ----------CATGTCACTGACTC--GGCTCTGCTCT--CTGCCCTAC-- Diplodia_seriata_CAA634 ----------CCTGTCATTGACTC--GGCTATGCAGC--TTGCCCTAC-- Diplodia_seriata_CAA636 ----------CCTGTCATTGACTC--GGCTATGCAGC--TTGCCCTAC-- Diplodia_africana_BL19 ---AAA--------------------ACACTGC---GCCTAG----TGGT Diplodia_africana_CAD014 ---AAA--------------------ACACTGC---GCCTAG----TGGT Diplodia_olivarum_BL97 ---AAA--------------------GCACTGC---GCCTAG----TGGT Diplodia_olivarum_CAD019 ---AAA--------------------GCACTGC---GCCTAG----TGGT Diplodia_fraxini_CBS136010 ---AAA--------------------GCATTGC---GCCTAG----TGGT Diplodia_fraxini_CBS136011 ---AAA--------------------GCATTGC---GCCTAG----TGGT Diplodia_mutila_CBS136014 ---AAA--------------------GCACTGT---GTCTAG----TGGT Diplodia_mutila_CAA507 ---AAA--------------------GCACTGT---GTCTAG----TGGT Diplodia_rosulata_CBS116470 ---AAA--------------------GCATTGC---GTCTAG----TGGT Diplodia_rosulata_CBS116472 ---AAA--------------------GCATTGC---GTCTAG----TGGT Diplodia_malorum_CBS112554 ---AAA--------------------GCATTGC---GTCTAG----TGGC Diplodia_cupressi_CBS261.85 ---GAA--------------------GCATTGC---GTCTAG----CGAT Diplodia_cupressi_CAA028 ---GAA--------------------GCATTGC---GTCTAG----CGAT Diplodia_corticola_CBS112549 AGCAGGCTCACCCAGGCGCTCAGCCCACCATGC---ACCCAGTCCCCAAT Diplodia_corticola_CAA691 AGCAGGCTCACCCAGGCGCTCAGCCCACCATGC---ACCCAGTCCCCAAT Diplodia_corticola_BL36 AGCAGGCTCACCCAGGCGCTCAGCCCACCATGC---ACCCAGTCCCCAAT Diplodia_eriobotryicola_CBS140851 ---AGC--------------------GCCTTGA---GTCTAG----CGGT Diplodia_insularis_CBS140350 ---AGA--------------------GTCTTGATGAGCCTAG----CCTT Diplodia_intermedia_CAA491 ---AGG--------------------GCCTTGC---GTCTAG----CGAT Diplodia_intermedia_CAA147 ---AGG--------------------GCCTTGC---GTCTAG----CGAT Diplodia_sapinea_CMW190 ---AGG--------------------ACCTTGC---GTCTAG----CGAT Diplodia_sapinea_CBS393.84 ---AGG--------------------ACCTTGC---GTCTAG----CGAT Diplodia_sapinea_CBS109727 ---AGG--------------------ACCTTGC---GTCTAG----CGAT Diplodia_scrobiculata_CMW30223 ---AGG--------------------ACCTTGC---GTCTAG----CGAT Diplodia_seriata_CAA634 ---AGG--------------------ACCTTGC---GTCTAA----CGAT Diplodia_seriata_CAA636 ---AGG--------------------ACCTTGC---GTCTAA----CGAT Diplodia_africana_BL19 GGCGT-------------------TGCCTCTCAC-----GGCACCTT--- Diplodia_africana_CAD014 GGCGT-------------------TGCCTCTCAC-----GGCACCTT--- Diplodia_olivarum_BL97 GGCGT-------------------TGCCTCTCAC-----GGCACCTT--- Diplodia_olivarum_CAD019 GGCGT-------------------TGCCTCTCAC-----GGCACCTT--- Diplodia_fraxini_CBS136010 GATGT-------------------TGCCTCTCAC-----GGCACCCT--- Diplodia_fraxini_CBS136011 GATGT-------------------TGCCTCTCAC-----GGCACCCT--- Diplodia_mutila_CBS136014 GAAGC-------------------TGCCTCTCAC-----GGTACCCT--- Diplodia_mutila_CAA507 GAAGC-------------------TGCCTCTCAC-----GGTACCCT--- Diplodia_rosulata_CBS116470 GAAGT-------------------TGCCTCTCAC-----GGCACCGT--- Diplodia_rosulata_CBS116472 GAAGT-------------------TGCCTCTCAC-----GGCACCGT--- Diplodia_malorum_CBS112554 GAAGT-------------------TGCCTCTCAC-----GGCACCCC--- Diplodia_cupressi_CBS261.85 GACGC-------------------TACCTCTTAC-----GGCACACT--- Diplodia_cupressi_CAA028 GACGC-------------------TACCTCTTAC-----GGCACACT--- Diplodia_corticola_CBS112549 GACGTCGCTTTTGCGAACCTGCAGCGAGTCGCACAGACCGGTGAAGTTAC Diplodia_corticola_CAA691 GACGTCGCTTTTGCGAACCTGCAGCGAGTCGCACAGACCGGTGAAGTTAC Diplodia_corticola_BL36 GACGTCGCTTTTGCGAACCTGCAGCGAGTCGCACAGACCGGTGAAGTTAC Diplodia_eriobotryicola_CBS140851 GACG-------------------ATGAGGCTTTC-----GAGGAAAT--- Diplodia_insularis_CBS140350 GAAG-------------------AGGAGATTTAC-----GACGAACT--- Diplodia_intermedia_CAA491 GACG-------------------GTGAC-----------GATGGCTTTGA Diplodia_intermedia_CAA147 GACG-------------------GTGAC-----------GATGGCTTTGA Diplodia_sapinea_CMW190 GACG-------------------GTAAC-----------GATGGCTTTCA Diplodia_sapinea_CBS393.84 GACG-------------------GTAAC-----------GATGGCTTTCA Diplodia_sapinea_CBS109727 GACG-------------------GTAAC-----------GATGGCTTTCA Diplodia_scrobiculata_CMW30223 GACG-------------------GTGAC-----------GATGGCTTTCA Diplodia_seriata_CAA634 GACG-------------------GTATG-----------GGTGAATTTCA Diplodia_seriata_CAA636 GACG-------------------GTATG-----------GGTGAATTTCA Diplodia_africana_BL19 ------------GGCT---CACAATCTCACCAACAACCTTACCGATGATG Diplodia_africana_CAD014 ------------GGCT---CACAATCTCACCAACAACCTTACCGATGATG Diplodia_olivarum_BL97 ------------GGCT---CACAATCTCACCAACAACCTTACCGATGATG Diplodia_olivarum_CAD019 ------------GGCT---CACAATCTCACCAACAACCTTACCGATGATG Diplodia_fraxini_CBS136010 ------------GGCT---CACAATCTCACCAACAACCTTACCGATGATG Diplodia_fraxini_CBS136011 ------------GGCT---CACAATCTCACCAACAACCTTACCGATGATG Diplodia_mutila_CBS136014 ------------GGCT---CACAATCTCACCGAAGACCTTACCGATGATG Diplodia_mutila_CAA507 ------------GGCT---CACAATCTCACCGAAGACCTTACCGATGATG Diplodia_rosulata_CBS116470 ------------GGCT---CACAATCTCACCAACAACCTTACCGATGATG Diplodia_rosulata_CBS116472 ------------GGCT---CACAATCTCACCAACAACCTTACCGATGATG Diplodia_malorum_CBS112554 ------------GGCT---CACAATCTTACCAACAACCTTACCGATGATG Diplodia_cupressi_CBS261.85 ------------GGCT---CACGCTCTCACCAACGACCTCAGCGATGATG Diplodia_cupressi_CAA028 ------------GGCT---CACGCTCTCACCAACGACCTCAGCGATGATG Diplodia_corticola_CBS112549 CGTTTACGACAGACTTACTCACGCACTCGTG---GACGGCACCGATGAGG Diplodia_corticola_CAA691 CGTTTACGACAGACTTACTCACGCACTCGTG---GACGGCACCGATGAGG Diplodia_corticola_BL36 CGTTTACGACAGACTTACTCACGCACTCGTG---GACGGCACCGATGAGG Diplodia_eriobotryicola_CBS140851 GTGT-------GAGCT--GTATGACTGCG------GTCTCAACCACGAGG Diplodia_insularis_CBS140350 CTCT-------GAGCT--GCAAGATTGCG------GTCTCAGCCACGAGG Diplodia_intermedia_CAA491 CGCC-------AACCT--TCGCACCTACGCC---CACATGGAAGACGAGG Diplodia_intermedia_CAA147 CGCC-------AACCT--TCGCACCTACGCC---CACATGGAAGACGAGG Diplodia_sapinea_CMW190 CGCC-------AACCT--TCGCACCTACGCC---AACCTGGCAGATGAGG Diplodia_sapinea_CBS393.84 CGCC-------AACCT--TCGCACCTACGCC---AACCTGGCAGATGAGG Diplodia_sapinea_CBS109727 CGCC-------AACCT--TCGCACCTACGCC---AACCTGGCAGATGAGG Diplodia_scrobiculata_CMW30223 CGCC-------AACAT--TCGCACCTACGCC---AACCTAGATGACGAGG Diplodia_seriata_CAA634 CTCC-------GACCT--TGTTGACTTCGCC---GACATGGAAGACGAGC Diplodia_seriata_CAA636 CTCC-------GACCT--TGTTGACTTCGCC---GACATGGAAGACGAGC Diplodia_africana_BL19 AGC---TTTCTCAGATCCTGGCTCTCGACCCTGATCCGAAGACCTGCCGC Diplodia_africana_CAD014 AGC---TTTCTCAGATCCTGGCTCTCGACCCTGATCCGAAGACCTGCCGC Diplodia_olivarum_BL97 AGC---TTTCTCAGATCCTGGCTCTCGACCCTGATCCGAAGACTTGCCGC Diplodia_olivarum_CAD019 AGC---TTTCTCAGATCCTGGCTCTCGACCCTGATCCGAAGACTTGCCGC Diplodia_fraxini_CBS136010 AGC---TTTCTCAGATCCTGGCTCTCGACCCTGATCCGAAGACTTGCAGC Diplodia_fraxini_CBS136011 AGC---TTTCTCAGATCCTGGCTCTCGACCCTGATCCGAAGACTTGCAGC Diplodia_mutila_CBS136014 AGC---TTTCTCAGATCCTGGCCCTCGACCCTGATCCGGAGACTTGCAGC Diplodia_mutila_CAA507 AGC---TTTCTCAGATCCTGGCCCTCGACCCTGATCCGGAGACTTGCAGC Diplodia_rosulata_CBS116470 AGC---TTTCTCAGATCCTGGCTCTAGACCCTGATCCGGAGACTTGCAAC Diplodia_rosulata_CBS116472 AGC---TTTCTCAGATCCTGGCTCTAGACCCTGATCCGGAGACTTGCAAC Diplodia_malorum_CBS112554 AGC---TTTCTCAGATCCTGGCTCTCGACCCTGATCCGAAGACTTGCGAC Diplodia_cupressi_CBS261.85 AGC---TTTCTCGGATCCTGGCTCTCGACCCTGACCCGAAAACTTGCAAC Diplodia_cupressi_CAA028 AGC---TTTCTCGGATCCTGGCTCTCGACCCTGACCCGAAAACTTGCAAC Diplodia_corticola_CBS112549 ATCAGCTTGCCCAGATCCTCAACCTCGATCCGGATCCAAGTGATTGTACC Diplodia_corticola_CAA691 ATCAGCTTGCCCAGATCCTCAACCTCGATCCGGATCCAAGTGATTGTACC Diplodia_corticola_BL36 ATCAGCTTGCCCAGATCCTCAACCTCGATCCGGATCCAAGTGATTGTACC Diplodia_eriobotryicola_CBS140851 ATA---TCTCTGATGTCATGATCGTTGACCCGGACCCCATTGTCTGCACC Diplodia_insularis_CBS140350 ATA---TTTCCGATGTCATGATCATTGACCCAGACCCCAGTGTTTGCATC Diplodia_intermedia_CAA491 AGC---TTTCTCAGTTCATGGCCGTTGATCCGGATCCCGATACTTGCACC Diplodia_intermedia_CAA147 AGC---TTTCTCAGTTCATGGCCGTTGATCCGGATCCCGATACTTGCACC Diplodia_sapinea_CMW190 AAC---TTTCTCAGTTCATGGCCGTTGATCCGGATCCCGATACTTGCACC Diplodia_sapinea_CBS393.84 AAC---TTTCTCAGTTCATGGCCGTTGATCCGGATCCCGATACTTGCACC Diplodia_sapinea_CBS109727 AAC---TTTCTCAGTTCATGGCCGTTGATCCGGATCCCGATACTTGCACC Diplodia_scrobiculata_CMW30223 AGC---TTTCTCAGCTCATGGCCGTGGATCCGGATCCCGATACTTGCACC Diplodia_seriata_CAA634 TGC---TTGCTGAGTGCATGGACGTTGATCCGATCCCCGGTTCTTGCATC Diplodia_seriata_CAA636 TGC---TTGCTGAGTGCATGGACGTTGATCCGATCCCCGGTTCTTGCATC Diplodia_africana_BL19 ATGTTCCACTTCACCCACGCTGACTCGCTGTACTATGACAAGTCCATCAA Diplodia_africana_CAD014 ATGTTCCACTTCACCCACGCTGACTCGCTGTACTATGACAAGTCCATCAA Diplodia_olivarum_BL97 ATGTTCCACTTCACCCACGCTGACTCGCTGTACTATGACAAGTCCATCAA Diplodia_olivarum_CAD019 ATGTTCCACTTCACCCACGCTGACTCGCTGTACTATGACAAGTCCATCAA Diplodia_fraxini_CBS136010 ATGTTCCACTTCACCCACGCTGACACGCTGTACTATGACAAGTCCATCAA Diplodia_fraxini_CBS136011 ATGTTCCACTTCACCCACGCTGACACGCTGTACTATGACAAGTCCATCAA Diplodia_mutila_CBS136014 ATCTTCCACTTCAACCACACTGACCCAGTGTACCATGACAAGTCCATCAA Diplodia_mutila_CAA507 ATCTTCCACTTCAACCACACTGACCCAGTGTACCATGACAAGTCCATCAA Diplodia_rosulata_CBS116470 ATCTTCCACTTCAACCATACTGACCCGGTGTACCATGACAAGTCCATCAA Diplodia_rosulata_CBS116472 ATCTTCCACTTCAACCATACTGACCCGGTGTACCATGACAAGTCCATCAA Diplodia_malorum_CBS112554 ATGTTCCACTTCACCCACACTGACACGCTGTACTATGACAAGTCCATCAA Diplodia_cupressi_CBS261.85 ATGAGCCACTTCAATCACACCGACGCGCTGTACTATGACAATTCCACCAA Diplodia_cupressi_CAA028 ATGAGCCACTTCAATCACACCGACGCGCTGTACTATGACAATTCCACCAA Diplodia_corticola_CBS112549 ACCACCCGCATGGAGCACGCTCACCCCACGCTCTTCGATATGTCTACCAA Diplodia_corticola_CAA691 ACCACCCGCATGGAGCACGCTCACCCCACGCTCTTCGATATGTCTACCAA Diplodia_corticola_BL36 ACCACCCGCATGGAGCACGCTCACCCCACGCTCTTCGATATGTCTACCAA Diplodia_eriobotryicola_CBS140851 ACCACCCGTGCAGATCTCGCTGACGCAGTTCTCTATGATCGGTCCATCAA Diplodia_insularis_CBS140350 GCCGCCCGTACGAACCTCGCTGACCCAGATCTCTACGGTCGGTCCATCAA Diplodia_intermedia_CAA491 ACCAGCCGCTTCGACTTCAGTGAGCCGGTCCTCTACCAGCGTTCCATCAA Diplodia_intermedia_CAA147 ACCAGCCGCTTCGACTTCAGTGAGCCGGTCCTCTACCAGCGTTCCATCAA Diplodia_sapinea_CMW190 ACCAGCCGCTTCGACTTCACTGAGCCGGTCCTCTACGACCGTTCCATCAA Diplodia_sapinea_CBS393.84 ACCAGCCGCTTCGACTTCACTGAGCCGGTCCTCTACGACCGTTCCATCAA Diplodia_sapinea_CBS109727 ACCAGCCGCTTCGACTTCACTGAGCCGGTCCTCTACGACCGTTCCATCAA Diplodia_scrobiculata_CMW30223 ACCAGCCGCTTCAACTTCACTGAGCCGGTTCTCTACGACCGTTCCATCAA Diplodia_seriata_CAA634 ACCAGCCGCTACGACTTCACTGAGCCGGTCCTCTACGACCGTTCCATCAA Diplodia_seriata_CAA636 ACCAGCCGCTACGACTTCACTGAGCCGGTCCTCTACGACCGTTCCATCAA Diplodia_africana_BL19 CTCTCAGCTCGCGCACCCT-ATGTACGATCAGCGCTGGTACTTTGGATCG Diplodia_africana_CAD014 CTCTCAGCTCGCGCACCCT-ATGTACGATCAGCGCTGGTACTTTGGATCG Diplodia_olivarum_BL97 CTCTCAGCTCGCGCACCCT-ATGTACGATCAGCGCTGGTACTTTGGATCG Diplodia_olivarum_CAD019 CTCTCAGCTCGCGCACCCT-ATGTACGATCAGCGCTGGTACTTTGGATCG Diplodia_fraxini_CBS136010 CTCTCAGCTCGCACATCCT-ATGTACGATCAGCGCTGGTACTTTGGATCG Diplodia_fraxini_CBS136011 CTCTCAGCTCGCACATCCT-ATGTACGATCAGCGCTGGTACTTTGGATCG Diplodia_mutila_CBS136014 CTCTCAGCTCACGCATCCT-ATGAACGATCAGCGCTGGTACTTTGGATCG Diplodia_mutila_CAA507 CTCTCAGCTCACGCATCCT-ATGAACGATCAGCGCTGGTACTTTGGATCG Diplodia_rosulata_CBS116470 CTCTCAGCTCACGCATCCT-ATGGACGATCAGCGCTGGTACTTTGGATCG Diplodia_rosulata_CBS116472 CTCTCAGCTCACGCATCCT-ATGGACGATCAGCGCTGGTACTTTGGATCG Diplodia_malorum_CBS112554 TTCTCAGCTCACGCATCCT-ATGAACGATCAGCGCTGGTACTTTGGATCG Diplodia_cupressi_CBS261.85 CTCTCAGATCCTGCACCCCCACGAA--ATT--CGCCCGTACTATCGATCG Diplodia_cupressi_CAA028 CTCTCAGATCCTGCACCCCCACGAA--ATT--CGCCCGTACTATCGATCG Diplodia_corticola_CBS112549 CGCCCAGCTCA---ATGGCAATGAA--CTC--CGTCCCTACTTCCCGATG Diplodia_corticola_CAA691 CGCCCAGCTCA---ATGGCAATGAA--CTC--CGTCCCTACTTCCCGATG Diplodia_corticola_BL36 CGCCCAGCTCA---ATGGCAATGAA--CTC--CGTCCCTACTTCCCGATG Diplodia_eriobotryicola_CBS140851 TGCTCAGATCACAGGTGCCAACGAC--ATC--CGTCCGTACTTCCCGTCG Diplodia_insularis_CBS140350 TGCTCAGATTATGGGTGCCAACGAC--ATC--CGTCCGTACTTCCCGTCG Diplodia_intermedia_CAA491 CCGTCACCTCATGGGTTACTACGAC--ATC--CGTCCGTACTACCAGGCG Diplodia_intermedia_CAA147 CCGTCACCTCAGGGGTTACTACGAC--ATC--CGTCCGTACTACCAGGCG Diplodia_sapinea_CMW190 TCGTGAGCTCACGGGTTACTACGAC--ATC--CGTCCGTACTACCAGTCG Diplodia_sapinea_CBS393.84 TCGTGAGCTCACGGGTTACTACGAC--ATC--CGTCCGTACTACCAGTCG Diplodia_sapinea_CBS109727 TCGTGAGCTCACGGGTTACTACGAC--ATC--CGTCCGTACTACCAGTCG Diplodia_scrobiculata_CMW30223 TCGTGAGCTCTCGGGTTACTACGAC--ATC--CGTCCGTACTTCCCGTCG Diplodia_seriata_CAA634 TAGTGAGCTCACGGGTAACGACGAC--CTC--CGTCCGTACTACCAGTTG Diplodia_seriata_CAA636 TAGTGAGCTCACGGGTAACGACGAC--CTC--CGTCCGTACTACCAGTTG Diplodia_africana_BL19 AATGCCAGCCGCCT Diplodia_africana_CAD014 AATGCCAGCCGCCT Diplodia_olivarum_BL97 AATGCCAGCCGCCT Diplodia_olivarum_CAD019 AATGCCAGCCGCCT Diplodia_fraxini_CBS136010 AATGCCAGCCGCCT Diplodia_fraxini_CBS136011 AATGCCAGCCGCCT Diplodia_mutila_CBS136014 AATGCCAGCCGCCT Diplodia_mutila_CAA507 AATGCCAGCCGCCT Diplodia_rosulata_CBS116470 AATGCCAGCCGCCT Diplodia_rosulata_CBS116472 AATGCCAGCCGCCT Diplodia_malorum_CBS112554 AATGCCAGCCGCCT Diplodia_cupressi_CBS261.85 AATGACAGCCACCT Diplodia_cupressi_CAA028 AATGACAGCCACCT Diplodia_corticola_CBS112549 AACGACAGCCGTCT Diplodia_corticola_CAA691 AACGACAGCCGTCT Diplodia_corticola_BL36 AACGACAGCCGTCT Diplodia_eriobotryicola_CBS140851 AATGACCGTCGCCT Diplodia_insularis_CBS140350 AACGACAATCGCCT Diplodia_intermedia_CAA491 CACAACCGTCACCT Diplodia_intermedia_CAA147 CACAACCGTCACCT Diplodia_sapinea_CMW190 CCCGACCGTCGCCT Diplodia_sapinea_CBS393.84 CCCGACCGTCGCCT Diplodia_sapinea_CBS109727 CCCGACCGTCGCCT Diplodia_scrobiculata_CMW30223 CCCGACCGTCGCCT Diplodia_seriata_CAA634 CCCAACCATCGCCA Diplodia_seriata_CAA636 CCCAACCATCGCCA ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 864; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 864; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 864; END; BEGIN TREES; Title Imported_trees; ID 015ecd27f53f2; LINK Taxa = Taxa; TRANSLATE [0] 1 Diplodia_africana_BL19, [1] 2 Diplodia_africana_CAD014, [2] 3 Diplodia_olivarum_BL97, [3] 4 Diplodia_olivarum_CAD019, [4] 5 Diplodia_fraxini_CBS136010, [5] 6 Diplodia_fraxini_CBS136011, [6] 7 Diplodia_mutila_CBS136014, [7] 8 Diplodia_mutila_CAA507, [8] 9 Diplodia_rosulata_CBS116470, [9] 10 Diplodia_rosulata_CBS116472, [10] 11 Diplodia_malorum_CBS112554, [11] 12 Diplodia_cupressi_CBS261.85, [12] 13 Diplodia_cupressi_CAA028, [13] 14 Diplodia_corticola_CBS112549, [14] 15 Diplodia_corticola_CAA691, [15] 16 Diplodia_corticola_BL36, [16] 17 Diplodia_eriobotryicola_CBS140851, [17] 18 Diplodia_insularis_CBS140350, [18] 19 Diplodia_intermedia_CAA491, [19] 20 Diplodia_intermedia_CAA147, [20] 21 Diplodia_sapinea_CMW190, [21] 22 Diplodia_sapinea_CBS393.84, [22] 23 Diplodia_sapinea_CBS109727, [23] 24 Diplodia_scrobiculata_CMW30223, [24] 25 Diplodia_seriata_CAA634, [25] 26 Diplodia_seriata_CAA636; TREE Imported_tree_1 = ((((((((1:0.0,2:0.0)0.9420:0.00302895,(3:0.0,4:0.00150868)0.8970:0.00150721)1.0000:0.02012251,(5:0.0,6:0.0)1.0000:0.00332495)0.9990:0.01393991,11:0.02033449)0.8490:0.007518,((7:0.0,8:0.0)1.0000:0.02136294,(9:0.0,10:0.0)1.0000:0.01900409)0.9330:0.00635309)0.9980:0.05706971,(12:0.0,13:0.0)1.0000:0.08299915)1.0000:0.14521897,(15:0.0,(14:0.0,16:0.0)0.3060:0.0)1.0000:0.24201541)0.9930:0.013511,((17:0.05745897,18:0.0628546)1.0000:0.07440264,(24:0.01611131,(((22:0.0,23:0.0)0.3310:0.0,21:0.0)0.9990:0.0104664,((19:0.0,20:0.00151454)1.0000:0.03763703,(25:0.0,26:0.0)1.0000:0.08831036)0.2080:0.00506347)0.3450:0.01181154)1.0000:0.09655268)0.9930:0.058671); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1506681490504; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 2626511314129342340; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 8400930952015781692; mqVersion 331; checksumv 0 3 3564620412 null getNumChars 864 numChars 864 getNumTaxa 26 numTaxa 26 short true bits 15 states 15 sumSquaresStatesOnly 354841.0 sumSquares 354841.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 158; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1362 649; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #8400930952015781692 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1204 577; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 16 6 1 1; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;