#NEXUS [written Fri Sep 29 12:08:55 BST 2017 by Mesquite version 3.31 (build 859) at Fabio-HP/192.168.1.13] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=9; TAXLABELS Diplodia_quercivora_CBS133852 Diplodia_quercivora_CBS133853 Diplodia_corticola_CBS112549 Diplodia_corticola_CAA691 Diplodia_corticola_CAA499 Diplodia_corticola_CAA500 Diplodia_corticola_BL36 Diplodia_corticola_BL37 Diplodia_mutila_CBS136014 ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=450; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = ?; MATRIX Diplodia_quercivora_CBS133852 ATACCTCTGTTGCTTTGGCGGCTCTCGCCGCGAGGA-AGGCCCTTAAATG Diplodia_quercivora_CBS133853 ATACCTCTGTTGCTTTGGCGGCTCTCGCCGCGAGGA-AGGCCCTTAAATG Diplodia_corticola_CBS112549 ATACCTCTGTTGCTTTGGCGGCTCTCGCCGCGAGGGGAGGCCCTGAAAAG Diplodia_corticola_CAA691 ATACCTCTGTTGCTTTGGCGGCTCTCGCCGCGAGGGGAGGCCCTGAAAAG Diplodia_corticola_CAA499 ATACCTCTGTTGCTTTGGCGGCTCTCGCCGCGAGGGGAGGCCCTGAAAAG Diplodia_corticola_CAA500 ATACCTCTGTTGCTTTGGCGGCTCTCGCCGCGAGGGGAGGCCCTGAAAAG Diplodia_corticola_BL36 ATACCTCTGTTGCTTTGGCGGCTCTCGCCGCGAGGGGAGGCCCTGAAAAG Diplodia_corticola_BL37 ATACCTCTGTTGCTTTGGCGGCTCTCGCCGCGAGGGGAGGCCCTGAAAAG Diplodia_mutila_CBS136014 ATACCTCTGTTGCTTTGGCGGCTCTTGCCGCGTGG--AGGCCCTCAAAAG Diplodia_quercivora_CBS133852 GGGCCCCCCCCCTCGCGCGCC-TCCGCCAGAGGACCTTCAAACTCCAGTC Diplodia_quercivora_CBS133853 GGGCCCCCCCCCTCGCGCGCC-TCCGCCAGAGGACCTTCAAACTCCAGTC Diplodia_corticola_CBS112549 GGCCCGCCCCCCTCGCGCGCCCTCCGCCAGAGGACCTTCAAACTCCAGTC Diplodia_corticola_CAA691 GGCCCGCCCCCCTCGCGCGCCCTCCGCCAGAGGACCTTCAAACTCCAGTC Diplodia_corticola_CAA499 GGCCCGCCCCCCTCGCGCGCCCTCCGCCAGAGGACCTTCAAACTCCAGTC Diplodia_corticola_CAA500 GGCCCGCCCCCCTCGCGCGCCCTCCGCCAGAGGACCTTCAAACTCCAGTC Diplodia_corticola_BL36 GGCCCGCCCCCCTCGCGCGCCCTCCGCCAGAGGACCTTCAAACTCCAGTC Diplodia_corticola_BL37 GGCCCGCCCCCCTCGCGCGCCCTCCGCCAGAGGACCTTCAAACTCCAGTC Diplodia_mutila_CBS136014 -------CCCCCCCGCGCGCT-TCCGCCAGAGGACCTTCAAACTCCAGTC Diplodia_quercivora_CBS133852 AGTAAACGTCGACGTCTGATACACAAGTTAATAAACTAAAACTTTCAACA Diplodia_quercivora_CBS133853 AGTAAACGTCGACGTCTGATACACAAGTTAATAAACTAAAACTTTCAACA Diplodia_corticola_CBS112549 AGTAAACGTCGACGTCTGATACACAAGTTAATAAACTAAAACTTTCAACA Diplodia_corticola_CAA691 AGTAAACGTCGACGTCTGATACACAAGTTAATAAACTAAAACTTTCAACA Diplodia_corticola_CAA499 AGTAAACGTCGACGTCTGATACACAAGTTAATAAACTAAAACTTTCAACA Diplodia_corticola_CAA500 AGTAAACGTCGACGTCTGATACACAAGTTAATAAACTAAAACTTTCAACA Diplodia_corticola_BL36 AGTAAACGTCGACGTCTGATACACAAGTTAATAAACTAAAACTTTCAACA Diplodia_corticola_BL37 AGTAAACGTCGACGTCTGATACACAAGTTAATAAACTAAAACTTTCAACA Diplodia_mutila_CBS136014 AGTAAACGTCGACGTCTGAAAAACAAGTTAATAAACTAAAACTTTCAACA Diplodia_quercivora_CBS133852 ACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAA Diplodia_quercivora_CBS133853 ACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAA Diplodia_corticola_CBS112549 ACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAA Diplodia_corticola_CAA691 ACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAA Diplodia_corticola_CAA499 ACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAA Diplodia_corticola_CAA500 ACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAA Diplodia_corticola_BL36 ACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAA Diplodia_corticola_BL37 ACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAA Diplodia_mutila_CBS136014 ACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAA Diplodia_quercivora_CBS133852 GTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACAT Diplodia_quercivora_CBS133853 GTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACAT Diplodia_corticola_CBS112549 GTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACAT Diplodia_corticola_CAA691 GTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACAT Diplodia_corticola_CAA499 GTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACAT Diplodia_corticola_CAA500 GTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACAT Diplodia_corticola_BL36 GTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACAT Diplodia_corticola_BL37 GTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACAT Diplodia_mutila_CBS136014 GTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACAT Diplodia_quercivora_CBS133852 TGCGCCCCTTGGCATTCCGAGGGGCATGCCTGTTCGAGCGTCATTACAAC Diplodia_quercivora_CBS133853 TGCGCCCCTTGGCATTCCGAGGGGCATGCCTGTTCGAGCGTCATTACAAC Diplodia_corticola_CBS112549 TGCGCCCCTTGGCATTCCGAGGGGCATGCCTGTTCGAGCGTCATTACAAC Diplodia_corticola_CAA691 TGCGCCCCTTGGCATTCCGAGGGGCATGCCTGTTCGAGCGTCATTACAAC Diplodia_corticola_CAA499 TGCGCCCCTTGGCATTCCGAGGGGCATGCCTGTTCGAGCGTCATTACAAC Diplodia_corticola_CAA500 TGCGCCCCTTGGCATTCCGAGGGGCATGCCTGTTCGAGCGTCATTACAAC Diplodia_corticola_BL36 TGCGCCCCTTGGCATTCCGAGGGGCATGCCTGTTCGAGCGTCATTACAAC Diplodia_corticola_BL37 TGCGCCCCTTGGCATTCCGAGGGGCATGCCTGTTCGAGCGTCATTACAAC Diplodia_mutila_CBS136014 TGCGCCCCTTGGCATTCCGAGGGGCATGCCTGTTCGAGCGTCATTACAAC Diplodia_quercivora_CBS133852 CCTCAAGCTCTGCTTGGTATTGGGCGCCGTCCTCTCTGCGGACGCGCCTC Diplodia_quercivora_CBS133853 CCTCAAGCTCTGCTTGGTATTGGGCGCCGTCCTCTCTGCGGACGCGCCTC Diplodia_corticola_CBS112549 CCTCAAGCTCTGCTTGGTATTGGGCGCCGTCCTCTCTGCGGACGCGCCTC Diplodia_corticola_CAA691 CCTCAAGCTCTGCTTGGTATTGGGCGCCGTCCTCTCTGCGGACGCGCCTC Diplodia_corticola_CAA499 CCTCAAGCTCTGCTTGGTATTGGGCGCCGTCCTCTCTGCGGACGCGCCTC Diplodia_corticola_CAA500 CCTCAAGCTCTGCTTGGTATTGGGCGCCGTCCTCTCTGCGGACGCGCCTC Diplodia_corticola_BL36 CCTCAAGCTCTGCTTGGTATTGGGCGCCGTCCTCTCTGCGGACGCGCCTC Diplodia_corticola_BL37 CCTCAAGCTCTGCTTGGTATTGGGCGCCGTCCTCTCTGCGGACGCGCCTC Diplodia_mutila_CBS136014 CCTCAAGCTCTGCTTGGTATTGGGCGCCGTCCTCTCTGCGGACGCGCCTC Diplodia_quercivora_CBS133852 AAAGACCTCGGCGGTGGCTGTTCAGCCCTCAAGCGTAGTAGAATACACCT Diplodia_quercivora_CBS133853 AAAGACCTCGGCGGTGGCTGTTCAGCCCTCAAGCGTAGTAGAATACACCT Diplodia_corticola_CBS112549 AAAGACCTCGGCGGTGGCTGTCCAGCCCTCAAGCGTAGTAGAATACACCT Diplodia_corticola_CAA691 AAAGACCTCGGCGGTGGCTGTCCAGCCCTCAAGCGTAGTAGAATACACCT Diplodia_corticola_CAA499 AAAGACCTCGGCGGTGGCTGTCCAGCCCTCAAGCGTAGTAGAATACACCT Diplodia_corticola_CAA500 AAAGACCTCGGCGGTGGCTGTCCAGCCCTCAAGCGTAGTAGAATACACCT Diplodia_corticola_BL36 AAAGACCTCGGCGGTGGCTGTCCAGCCCTCAAGCGTAGTAGAATACACCT Diplodia_corticola_BL37 AAAGACCTCGGCGGTGGCTGTCCAGCCCTCAAGCGTAGTAGAATACACCT Diplodia_mutila_CBS136014 AAAGACCTCGGCGGTGGCTGTTCAGCCCTCAAGCGTAGTAGAATACACCT Diplodia_quercivora_CBS133852 CGCTTTGGAGCGGTTGGCGTCGCCCGCCGGACGAACCTTCTGAACTTTTC Diplodia_quercivora_CBS133853 CGCTTTGGAGCGGTTGGCGTCGCCCGCCGGACGAACCTTCTGAACTTTTC Diplodia_corticola_CBS112549 CGCTTTGGAGCGGCTGGCGTCGCCCGCCGGACGAACCTTCTGAACTTTTC Diplodia_corticola_CAA691 CGCTTTGGAGCGGCTGGCGTCGCCCGCCGGACGAACCTTCTGAACTTTTC Diplodia_corticola_CAA499 CGCTTTGGAGCGGCTGGCGTCGCCCGCCGGACGAACCTTCTGAACTTTTC Diplodia_corticola_CAA500 CGCTTTGGAGCGGCTGGCGTCGCCCGCCGGACGAACCTTCTGAACTTTTC Diplodia_corticola_BL36 CGCTTTGGAGCGGCTGGCGTCGCCCGCCGGACGAACCTTCTGAACTTTTC Diplodia_corticola_BL37 CGCTTTGGAGCGGCTGGCGTCGCCCGCCGGACGAACCTTCTGAACTTTTC Diplodia_mutila_CBS136014 CGCTTTGGAGTGGTTGGCGTCGCCCGCCGGACGAACCTTCTGAACTTTTC ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 450; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 450; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 450; END; BEGIN TREES; Title Imported_trees; ID 015ecd51d97e6; LINK Taxa = Taxa; TRANSLATE [0] 1 Diplodia_quercivora_CBS133852, [1] 2 Diplodia_quercivora_CBS133853, [2] 3 Diplodia_corticola_CBS112549, [3] 4 Diplodia_corticola_CAA691, [4] 5 Diplodia_corticola_CAA499, [5] 6 Diplodia_corticola_CAA500, [6] 7 Diplodia_corticola_BL36, [7] 8 Diplodia_corticola_BL37, [8] 9 Diplodia_mutila_CBS136014; TREE Imported_tree_1 = (((((((7:0.0,8:0.0)0.1050:0.0,6:0.0)0.0350:0.0,5:0.0)0.0480:0.0,4:0.0)0.1260:0.0,3:0.0)0.9540:0.01052649,(1:0.0,2:0.0)0.8960:0.00562254)0.0000:0.00375564,9:0.01428213); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1506683335550; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 7354485187773834369; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 1368691046652645387; mqVersion 331; checksumv 0 3 4289690089 null getNumChars 450 numChars 450 getNumTaxa 9 numTaxa 9 short true bits 15 states 15 sumSquaresStatesOnly 80869.0 sumSquares 80869.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 158; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1366 649; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #1368691046652645387 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1208 577; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 16 6 1 1; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;