#NEXUS [written Fri Sep 29 12:13:28 BST 2017 by Mesquite version 3.31 (build 859) at Fabio-HP/192.168.1.13] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=9; TAXLABELS Diplodia_quercivora_CBS133852 Diplodia_quercivora_CBS133853 Diplodia_corticola_BL36 Diplodia_corticola_BL37 Diplodia_corticola_CAA499 Diplodia_corticola_CAA500 Diplodia_corticola_CBS112549 Diplodia_corticola_CAA691 Diplodia_mutila_CBS136014 ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=426; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = ?; MATRIX Diplodia_quercivora_CBS133852 GGTAACCAAATTGGTGCTGCCTTCTGGTTTGTTGCCAAAACACTCCCGCA Diplodia_quercivora_CBS133853 GGTAACCAAATTGGTGCTGCCTTCTGGTTTGTTGCCAAAACACTCCCGCA Diplodia_corticola_BL36 GGTAACCAAATTGGTGCTGCCTTCTGGTTTGTTGCCAAAACACTCCCGCA Diplodia_corticola_BL37 GGTAACCAAATTGGTGCTGCCTTCTGGTTTGTTGCCAAAACACTCCCGCA Diplodia_corticola_CAA499 GGTAACCAAATTGGTGCTGCCTTCTGGTTTGTTGCCAAAACACTCCCGCA Diplodia_corticola_CAA500 GGTAACCAAATTGGTGCTGCCTTCTGGTTTGTTGCCAAAACACTCCCGCA Diplodia_corticola_CBS112549 GGTAACCAAATCGGTGCTGCTTTCTGGTTTGTTGCCAAAACACTCCCGCA Diplodia_corticola_CAA691 GGTAACCAAATCGGTGCTGCTTTCTGGTTTGTTGCCAAAACACTCCCGCA Diplodia_mutila_CBS136014 GGTAACCAAATTGGTGCTGCCTTCTGGTTTGTTGCCAAAACACTCCCGCA Diplodia_quercivora_CBS133852 GCCGCGCCCCCCGCTAATGCGAATCGACACCACAGGCAGACCATCTCTGG Diplodia_quercivora_CBS133853 GCCGCGCCCCCCGCTAATGCGAATCGACACCACAGGCAGACCATCTCTGG Diplodia_corticola_BL36 GCCGCGCCCCCCGCTAATGCGAATCGACACCACAGGCAGACCATCTCTGG Diplodia_corticola_BL37 GCCGCGCCCCCCGCTAATGCGAATCGACACCACAGGCAGACCATCTCTGG Diplodia_corticola_CAA499 GCCGCGCCCCCCGCTGACGCGAATCAACACCACAGGCAGACCATCTCTGG Diplodia_corticola_CAA500 GCCGCGCCCCCCGCTGACGCGAATCAACACCACAGGCAGACCATCTCTGG Diplodia_corticola_CBS112549 GCCGCGCCCCCCGCTGACGCGAATCAACACCACAGGCAGACCATCTCTGG Diplodia_corticola_CAA691 GCCGCGCCCCCCGCTGACGCGAATCGACACCACAGGCAGACCATCTCTGG Diplodia_mutila_CBS136014 GCTGCGCCCCCCGCTGACCCCAATCGACAC-ACAGGCAGACCATCTCTGG Diplodia_quercivora_CBS133852 CGAGCACGGCCTCGACGGCTCTGGCGTGTAAGTGTGCGCTGTCTTTGCCG Diplodia_quercivora_CBS133853 CGAGCACGGCCTCGACGGCTCTGGCGTGTAAGTGTGCGCTGTCTTTGCCG Diplodia_corticola_BL36 CGAGCACGGCCTCGACGGCTCTGGCGTGTAAGTGTGCGCTGTCTTTGCCG Diplodia_corticola_BL37 CGAGCACGGCCTCGACGGCTCTGGCGTGTAAGTGTGCGCTGTCTTTGCCG Diplodia_corticola_CAA499 CGAGCATGGCCTCGACGGCTCTGGCGTGTAAGTGTGCGCTGTCTTTGCCG Diplodia_corticola_CAA500 CGAGCATGGCCTCGACGGCTCTGGCGTGTAAGTGTGCGCTGTCTTTGCCG Diplodia_corticola_CBS112549 CGAGCATGGCCTCGACGGCTCTGGCGTGTAAGTGTGCGCTGTCTTTGCCG Diplodia_corticola_CAA691 CGAGCACGGCCTCGACGGCTCTGGCGTGTAAGTGTGCGCTGTCTTTGCCG Diplodia_mutila_CBS136014 CGAGCACGGCCTGGACGGCTCCGGCGTGTAAGTGTGCGCTGTCTTTGCCG Diplodia_quercivora_CBS133852 CTCTCTGCAATCGCTGACCCTCGGCAGCTACAATGGCACCTCCGACCTCC Diplodia_quercivora_CBS133853 CTCTCTGCAATCGCTGACCCTCGGCAGCTACAATGGCACCTCCGACCTCC Diplodia_corticola_BL36 CGCTCTGCAATCGCTGACCCTCGGCAGCTACAATGGCACCTCCGACCTCC Diplodia_corticola_BL37 CGCTCTGCAATCGCTGACCCTCGGCAGCTACAATGGCACCTCCGACCTCC Diplodia_corticola_CAA499 CGCTTTGCAATCGCTGACCCTCGGCAGCTACAATGGCACCTCCGACCTCC Diplodia_corticola_CAA500 CGCTTTGCAATCGCTGACCCTCGGCAGCTACAATGGCACCTCCGACCTCC Diplodia_corticola_CBS112549 CGCTTTGCAATCGCTGACCCTCGGCAGCTACAATGGCACCTCCGACCTCC Diplodia_corticola_CAA691 CGCTTTGCAATCGCTGACCCTCGGCAGCTACAATGGCACCTCCGACCTCC Diplodia_mutila_CBS136014 CGCTTTGCAATCGCTGACTCTCGGCAGCTACAATGGCACCTCCGACCTCC Diplodia_quercivora_CBS133852 AGCTGGAGCGCATGAACGTCTACTTCAACGAGGTACTCTTTCACTAATTA Diplodia_quercivora_CBS133853 AGCTGGAGCGCATGAACGTCTACTTCAACGAGGTACTCTTTCACTAATTA Diplodia_corticola_BL36 AGCTGGAGCGCATGAACGTCTACTTCAACGAGGTACTCTTTCACTAATTA Diplodia_corticola_BL37 AGCTGGAGCGCATGAACGTCTACTTCAACGAGGTACTCTTTCACTAATTA Diplodia_corticola_CAA499 AGCTGGAGCGCATGAACGTCTACTTCAACGAGGTACTCTTTCACTAATTA Diplodia_corticola_CAA500 AGCTGGAGCGCATGAACGTCTACTTCAACGAGGTACTCTTTCACTAATTA Diplodia_corticola_CBS112549 AGCTGGAGCGCATGAACGTCTACTTCAACGAGGTACTCTTTCACTAATTA Diplodia_corticola_CAA691 AGCTGGAGCGCATGAACGTCTACTTCAACGAGGTACTCTTTCACTAATTA Diplodia_mutila_CBS136014 AGCTGGAGCGCATGAACGTCTACTTCAACGAGGTACTCTCTCACTAATTA Diplodia_quercivora_CBS133852 GACACACACCTGAAGTATGGCAATCTTCTGAACGCGCAGCAGGCTTCCAA Diplodia_quercivora_CBS133853 GACACACACCTGAAGTATGGCAATCTTCTGAACGCGCAGCAGGCTTCCAA Diplodia_corticola_BL36 GACACACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCTTCCAA Diplodia_corticola_BL37 GACACACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCTTCCAA Diplodia_corticola_CAA499 GACGAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCTTCCAA Diplodia_corticola_CAA500 GACGAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCTTCCAA Diplodia_corticola_CBS112549 GACGAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCTTCCAA Diplodia_corticola_CAA691 GACGAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCTTCCAA Diplodia_mutila_CBS136014 GACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCTTCCAA Diplodia_quercivora_CBS133852 CAACAAGTACGTTCCTCGTGCTGTCCTTGTTGACCTCGAGCCCGGCACCA Diplodia_quercivora_CBS133853 CAACAAGTACGTTCCTCGTGCTGTCCTTGTTGACCTCGAGCCCGGCACCA Diplodia_corticola_BL36 CAACAAGTACGTTCCTCGTGCTGTCCTTGTTGACCTCGAGCCCGGCACCA Diplodia_corticola_BL37 CAACAAGTACGTTCCTCGTGCTGTCCTTGTTGACCTCGAGCCCGGCACCA Diplodia_corticola_CAA499 CAACAAGTACGTTCCTCGTGCTGTCCTCGTTGACCTCGAGCCCGGCACCA Diplodia_corticola_CAA500 CAACAAGTACGTTCCTCGTGCTGTCCTCGTTGACCTCGAGCCCGGCACCA Diplodia_corticola_CBS112549 CAACAAGTACGTTCCTCGTGCTGTCCTCGTTGACCTCGAGCCCGGCACCA Diplodia_corticola_CAA691 CAACAAGTACGTTCCTCGTGCTGTCCTTGTTGACCTCGAGCCCGGCACCA Diplodia_mutila_CBS136014 CAACAAGTACGTTCCTCGTGCTGTCCTCGTCGACCTCGAGCCCGGCACCA Diplodia_quercivora_CBS133852 TGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGCCCCGACAAC Diplodia_quercivora_CBS133853 TGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGCCCCGACAAC Diplodia_corticola_BL36 TGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGCCCCGACAAC Diplodia_corticola_BL37 TGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGCCCCGACAAC Diplodia_corticola_CAA499 TGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGCCCCGACAAC Diplodia_corticola_CAA500 TGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGCCCCGACAAC Diplodia_corticola_CBS112549 TGGATGCCGTCCGCGTCGGCCCCTTCGGCCAGCTCTTCCGCCCCGACAAC Diplodia_corticola_CAA691 TGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGCCCCGACAAC Diplodia_mutila_CBS136014 TGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGTCCCGACAAC Diplodia_quercivora_CBS133852 TTCGTCTTCGGCCAGTCTGGTGCCGG Diplodia_quercivora_CBS133853 TTCGTCTTCGGCCAGTCTGGTGCCGG Diplodia_corticola_BL36 TTCGTCTTCGGCCAGTCTGGTGCCGG Diplodia_corticola_BL37 TTCGTCTTCGGCCAGTCTGGTGCCGG Diplodia_corticola_CAA499 TTCGTCTTCGGCCAGTCTGGTGCCGG Diplodia_corticola_CAA500 TTCGTCTTCGGCCAGTCTGGTGCCGG Diplodia_corticola_CBS112549 TTCGTCTTCGGCCAGTCTGGTGCCGG Diplodia_corticola_CAA691 TTCGTCTTCGGCCAGTCTGGTGCCGG Diplodia_mutila_CBS136014 TTCGTTTTCGGCCAGTCTGGTGCCGG ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 426; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 426; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 426; END; BEGIN TREES; Title Imported_trees; ID 015ecd5647238; LINK Taxa = Taxa; TRANSLATE [0] 1 Diplodia_quercivora_CBS133852, [1] 2 Diplodia_quercivora_CBS133853, [2] 3 Diplodia_corticola_BL36, [3] 4 Diplodia_corticola_BL37, [4] 5 Diplodia_corticola_CAA499, [5] 6 Diplodia_corticola_CAA500, [6] 7 Diplodia_corticola_CBS112549, [7] 8 Diplodia_corticola_CAA691, [8] 9 Diplodia_mutila_CBS136014; TREE Imported_tree_1 = (((7:0.00707341,(5:0.0,6:0.0)0.8490:0.00000006)0.5680:0.00504012,(8:0.00498894,((3:0.0,4:0.0)0.3480:0.0,(1:0.0,2:0.0)0.9490:0.00710008)0.9950:0.01165612)0.3220:0.00228332)0.0000:0.00267693,9:0.02371646); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1506683609063; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 2809003639677010823; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 8034011547537604287; mqVersion 331; checksumv 0 3 2790931913 null getNumChars 426 numChars 426 getNumTaxa 9 numTaxa 9 short true bits 15 states 15 sumSquaresStatesOnly 74390.0 sumSquares 74390.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 158; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1366 649; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #8034011547537604287 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1208 577; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 16 6 1 1; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;