#NEXUS [written Sat Feb 10 16:00:42 SGT 2018 by Mesquite version 3.3 (build 854) at NoPsechrids.local/10.0.1.7] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=49; TAXLABELS 'Diplodia corticola BOT17_2' 'Diplodia corticola BOT18_1' 'Diplodia corticola BOT2_1' 'Diplodia corticola BOT22_2' 'Diplodia corticola BOT23_1' 'Diplodia corticola BOT24_1' 'Diplodia corticola BOT25_2' 'Diplodia corticola BOT26_1' 'Diplodia corticola BOT28_1' 'Diplodia corticola BOT29_1' 'Diplodia corticola BOT30_1' 'Diplodia corticola BOT3_1' 'Diplodia corticola BOT31_2' 'Diplodia corticola BOT32_2' 'Diplodia corticola BOT33_2' 'Diplodia corticola BOT34_1' 'Diplodia corticola BOT35_2' 'Diplodia corticola BOT39_1' 'Diplodia corticola BOT40_1' 'Diplodia corticola BOT4_1' 'Diplodia corticola BOT5_1' 'Diplodia corticola BOT6_2' 'Diplodia corticola BOT7_1' 'Diplodia corticola BOT8_1' 'Diplodia corticola BOT9_2' 'Diplodia corticola CBS112549_1' 'Diplodia corticola CBS678_88_2' 'Diplodia corticola CSC3_2' 'Diplodia corticola CSC65_2' 'Diplodia corticola CSC66_2' Diplodia_quercivora_BL8 Diplodia_quercivora_BL9 'Diplodia corticola CSC47_2_KX881726' 'Diplodia corticola CSC50_2_KX881727' 'Diplodia corticola CSC1_2_KX881728' 'Diplodia corticola CSC8_2_KX881729' 'Diplodia corticola CSC7_1_KX881730' 'Diplodia corticola CSC78_1_KX881731' 'Diplodia corticola CSC227_1_KX881732' 'Diplodia corticola CSC23_1_KX881733' 'Diplodia corticola CSC40_1_KX881734' 'Diplodia corticola CSC24_2_KX881735' 'Diplodia corticola CSC9_2_KX881736' 'Diplodia corticola CSC2_2_KX881737' 'Diplodia corticola CSC28_2_KX881738' 'Diplodia corticola CSC38_1_KX881739' 'Diplodia corticola CSC14_2_KX881741' 'Diplodia corticola CSC63_2_KX881742' 'Diplodia corticola CSC4_2_KX881743' ; END; BEGIN CHARACTERS; TITLE Diplodia_corticola_and_other_Botryosphaeriaceae; DIMENSIONS NCHAR=286; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX 'Diplodia corticola BOT17_2' CATCGAGAAGTTCGAGAAGGTAAGCCGATTATTCCCACTCCTGCACGTGTGCGGTGCTGCTGCGCACAGCCCGTCTTATCATCGCCCTGGTGAGGGGCATTTTTTGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTTTTGCGACCGGCGTCAGGCCGACGCGCCCCTCACTAGCGAGAAATGCCCTGACCACTCATGTGCTCTCGTATGACCACAAGCTAACGCACGCCACTACAGGAAGCCGCTGAGCTC-- 'Diplodia corticola BOT18_1' CATCGAGAAGTTCGAGAAGGTAAGCCGATTGTTCTCGCTCCTGCACGTGTGCGGTGCTGCTGCGCACAGCCCGTCTTATCATCGCGCTGGTGAGGGGCATTTTGCGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTTT-GCGACCGGCGTCAGGCCGACACGCCCCTCACTAGCGAGAAATGCCCTGACCACTCAGGTGCTCTCGTATGACCACAAGCTAACGCACGCCACTACAGGAAGCCGCTGAGCTC-- 'Diplodia corticola BOT2_1' CATCGAGAAGTTCGAGAAGGTAAGCCGATTGTTCTCGCTCCTGCACGTGTGCGGTGCTGCTGCGCACAGCCCGTCTTATCATCGCGCTGGTGAGGGGCATTTTGCGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTTT-GCGACCGGCGTCAGGCCGACACGCCCCTCACTAGCGAGAAATGCCCTGACCACTCAGGTGCTCTCGTATGACCACAAGCTAACGCACGCCACTACAGGAAGCCGCTGAGCTC-- 'Diplodia corticola BOT22_2' CATCGAGAAGTTCGAGAAGGTAAGCCGATTATTCCCACTCCTGCACGTGTGCGGTGCTGCTGCGCACAGCCCGTCTTATCATCGCCCTGGTGAGGGGCATTTTTTGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTTTTGCGACCGGCGTCAGGCCGACGCGCCCCTCACTAGCGAGAAATGCCCTGACCACTCATGTGCTCTCGTATGACCACAAGCTAACGCACGCCACTACAGGAAGCCGCTGAGCTC-- 'Diplodia corticola BOT23_1' CATCGAGAAGTTCGAGAAGGTAAGCCGATTGTTCTCGCTCCTGCACGTGTGCGGTGCTGCTGCGCACAGCCCGTCTTATCATCGCGCTGGTGAGGGGCATTTTGCGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTTT-GCGACCGGCGTCAGGCCGACACGCCCCTCACTAGCGAGAAATGCCCTGACCACTCAGGTGCTCTCGTATGACCACAAGCTAACGCACGCCACTACAGGAAGCCGCTGAGCTC-- 'Diplodia corticola BOT24_1' CATCGAGAAGTTCGAGAAGGTAAGCCGATTGTTCTCGCTCCTGCACGTGTGCGGTGCTGCTGCGCACAGCCCGTCTTATCATCGCGCTGGTGAGGGGCATTTTGCGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTTT-GCGACCGGCGTCAGGCCGACACGCCCCTCACTAGCGAGAAATGCCCTGACCACTCAGGTGCTCTCGTATGACCACAAGCTAACGCACGCCACTACAGGAAGCCGCTGAGCTC-- 'Diplodia corticola BOT25_2' CATCGAGAAGTTCGAGAAGGTAAGCCGATTATTCCCACTCCTGCACGTGTGCGGTGCTGCTGCGCACAGCCCGTCTTATCATCGCCCTGGTGAGGGGCATTTTTTGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTTTTGCGACCGGCGTCAGGCCGACGCGCCCCTCACTAGCGAGAAATGCCCTGACCACTCATGTGCTCTCGTATGACCACAAGCTAACGCACGCCACTACAGGAAGCCGCTGAGCTC-- 'Diplodia corticola BOT26_1' CATCGAGAAGTTCGAGAAGGTAAGCCGATTGTTCTCGCTCCTGCACGTGTGCGGTGCTGCTGCGCACAGCCCGTCTTATCATCGCGCTGGTGAGGGGCATTTTGCGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTTT-GCGACCGGCGTCAGGCCGACACGCCCCTCACTAGCGAGAAATGCCCTGACCACTCAGGTGCTCTCGTATGACCACAAGCTAACGCACGCCACTACAGGAAGCCGCTGAGCTC-- 'Diplodia corticola BOT28_1' CATCGAGAAGTTCGAGAAGGTAAGCCGATTGTTCTCGCTCCTGCACGTGTGCGGTGCTGCTGCGCACAGCCCGTCTTATCATCGCGCTGGTGAGGGGCATTTTGCGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTTT-GCGACCGGCGTCAGGCCGACACGCCCCTCACTAGCGAGAAATGCCCTGACCACTCAGGTGCTCTCGTATGACCACAAGCTAACGCACGCCACTACAGGAAGCCGCTGAGCTC-- 'Diplodia corticola BOT29_1' CATCGAGAAGTTCGAGAAGGTAAGCCGATTGTTCTCGCTCCTGCACGTGTGCGGTGCTGCTGCGCACAGCCCGTCTTATCATCGCGCTGGTGAGGGGCATTTTGCGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTTT-GCGACCGGCGTCAGGCCGACACGCCCCTCACTAGCGAGAAATGCCCTGACCACTCAGGTGCTCTCGTATGACCACAAGCTAACGCACGCCACTACAGGAAGCCGCTGAGCTC-- 'Diplodia corticola BOT30_1' CATCGAGAAGTTCGAGAAGGTAAGCCGATTGTTCTCGCTCCTGCACGTGTGCGGTGCTGCTGCGCACAGCCCGTCTTATCATCGCGCTGGTGAGGGGCATTTTGCGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTTT-GCGACCGGCGTCAGGCCGACACGCCCCTCACTAGCGAGAAATGCCCTGACCACTCAGGTGCTCTCGTATGACCACAAGCTAACGCACGCCACTACAGGAAGCCGCTGAGCTC-- 'Diplodia corticola BOT3_1' CATCGAGAAGTTCGAGAAGGTAAGCCGATTGTTCTCGCTCCTGCACGTGTGCGGTGCTGCTGCGCACAGCCCGTCTTATCATCGCGCTGGTGAGGGGCATTTTGCGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTTT-GCGACCGGCGTCAGGCCGACACGCCCCTCACTAGCGAGAAATGCCCTGACCACTCAGGTGCTCTCGTATGACCACAAGCTAACGCACGCCACTACAGGAAGCCGCTGAGCTC-- 'Diplodia corticola BOT31_2' CATCGAGAAGTTCGAGAAGGTAAGCCGATTATTCCCACTCCTGCACGTGTGCGGTGCTGCTGCGCACAGCCCGTCTTATCATCGCCCTGGTGAGGGGCATTTTTTGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTTTTGCGACCGGCGTCAGGCCGACGCGCCCCTCACTAGCGAGAAATGCCCTGACCACTCATGTGCTCTCGTATGACCACAAGCTAACGCACGCCACTACAGGAAGCCGCTGAGCTC-- 'Diplodia corticola BOT32_2' CATCGAGAAGTTCGAGAAGGTAAGCCGATTATTCCCACTCCTGCACGTGTGCGGTGCTGCTGCGCACAGCCCGTCTTATCATCGCCCTGGTGAGGGGCATTTTTTGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTTTTGCGACCGGCGTCAGGCCGACGCGCCCCTCACTAGCGAGAAATGCCCTGACCACTCATGTGCTCTCGTATGACCACAAGCTAACGCACGCCACTACAGGAAGCCGCTGAGCTC-- 'Diplodia corticola BOT33_2' CATCGAGAAGTTCGAGAAGGTAAGCCGATTATTCCCACTCCTGCACGTGTGCGGTGCTGCTGCGCACAGCCCGTCTTATCATCGCCCTGGTGAGGGGCATTTTTTGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTTTTGCGACCGGCGTCAGGCCGACGCGCCCCTCACTAGCGAGAAATGCCCTGACCACTCATGTGCTCTCGTATGACCACAAGCTAACGCACGCCACTACAGGAAGCCGCTGAGCTC-- 'Diplodia corticola BOT34_1' CATCGAGAAGTTCGAGAAGGTAAGCCGATTGTTCTCGCTCCTGCACGTGTGCGGTGCTGCTGCGCACAGCCCGTCTTATCATCGCGCTGGTGAGGGGCATTTTGCGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTTT-GCGACCGGCGTCAGGCCGACACGCCCCTCACTAGCGAGAAATGCCCTGACCACTCAGGTGCTCTCGTATGACCACAAGCTAACGCACGCCACTACAGGAAGCCGCTGAGCTC-- 'Diplodia corticola BOT35_2' CATCGAGAAGTTCGAGAAGGTAAGCCGATTATTCCCACTCCTGCACGTGTGCGGTGCTGCTGCGCACAGCCCGTCTTATCATCGCCCTGGTGAGGGGCATTTTTTGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTTTTGCGACCGGCGTCAGGCCGACGCGCCCCTCACTAGCGAGAAATGCCCTGACCACTCATGTGCTCTCGTATGACCACAAGCTAACGCACGCCACTACAGGAAGCCGCTGAGCTC-- 'Diplodia corticola BOT39_1' CATCGAGAAGTTCGAGAAGGTAAGCCGATTGTTCTCGCTCCTGCACGTGTGCGGTGCTGCTGCGCACAGCCCGTCTTATCATCGCGCTGGTGAGGGGCATTTTGCGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTTT-GCGACCGGCGTCAGGCCGACACGCCCCTCACTAGCGAGAAATGCCCTGACCACTCAGGTGCTCTCGTATGACCACAAGCTAACGCACGCCACTACAGGAAGCCGCTGAGCTC-- 'Diplodia corticola BOT40_1' CATCGAGAAGTTCGAGAAGGTAAGCCGATTGTTCTCGCTCCTGCACGTGTGCGGTGCTGCTGCGCACAGCCCGTCTTATCATCGCGCTGGTGAGGGGCATTTTGCGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTTT-GCGACCGGCGTCAGGCCGACACGCCCCTCACTAGCGAGAAATGCCCTGACCACTCAGGTGCTCTCGTATGACCACAAGCTAACGCACGCCACTACAGGAAGCCGCTGAGCTC-- 'Diplodia corticola BOT4_1' CATCGAGAAGTTCGAGAAGGTAAGCCGATTGTTCTCGCTCCTGCACGTGTGCGGTGCTGCTGCGCACAGCCCGTCTTATCATCGCGCTGGTGAGGGGCATTTTGCGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTTT-GCGACCGGCGTCAGGCCGACACGCCCCTCACTAGCGAGAAATGCCCTGACCACTCAGGTGCTCTCGTATGACCACAAGCTAACGCACGCCACTACAGGAAGCCGCTGAGCTC-- 'Diplodia corticola BOT5_1' CATCGAGAAGTTCGAGAAGGTAAGCCGATTGTTCTCGCTCCTGCACGTGTGCGGTGCTGCTGCGCACAGCCCGTCTTATCATCGCGCTGGTGAGGGGCATTTTGCGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTTT-GCGACCGGCGTCAGGCCGACACGCCCCTCACTAGCGAGAAATGCCCTGACCACTCAGGTGCTCTCGTATGACCACAAGCTAACGCACGCCACTACAGGAAGCCGCTGAGCTC-- 'Diplodia corticola BOT6_2' CATCGAGAAGTTCGAGAAGGTAAGCCGATTATTCCCACTCCTGCACGTGTGCGGTGCTGCTGCGCACAGCCCGTCTTATCATCGCCCTGGTGAGGGGCATTTTTTGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTTTTGCGACCGGCGTCAGGCCGACGCGCCCCTCACTAGCGAGAAATGCCCTGACCACTCATGTGCTCTCGTATGACCACAAGCTAACGCACGCCACTACAGGAAGCCGCTGAGCTC-- 'Diplodia corticola BOT7_1' CATCGAGAAGTTCGAGAAGGTAAGCCGATTGTTCTCGCTCCTGCACGTGTGCGGTGCTGCTGCGCACAGCCCGTCTTATCATCGCGCTGGTGAGGGGCATTTTGCGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTTT-GCGACCGGCGTCAGGCCGACACGCCCCTCACTAGCGAGAAATGCCCTGACCACTCAGGTGCTCTCGTATGACCACAAGCTAACGCACGCCACTACAGGAAGCCGCTGAGCTC-- 'Diplodia corticola BOT8_1' CATCGAGAAGTTCGAGAAGGTAAGCCGATTGTTCTCGCTCCTGCACGTGTGCGGTGCTGCTGCGCACAGCCCGTCTTATCATCGCGCTGGTGAGGGGCATTTTGCGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTTT-GCGACCGGCGTCAGGCCGACACGCCCCTCACTAGCGAGAAATGCCCTGACCACTCAGGTGCTCTCGTATGACCACAAGCTAACGCACGCCACTACAGGAAGCCGCTGAGCTC-- 'Diplodia corticola BOT9_2' CATCGAGAAGTTCGAGAAGGTAAGCCGATTATTCCCACTCCTGCACGTGTGCGGTGCTGCTGCGCACAGCCCGTCTTATCATCGCCCTGGTGAGGGGCATTTTTTGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTTTTGCGACCGGCGTCAGGCCGACGCGCCCCTCACTAGCGAGAAATGCCCTGACCACTCATGTGCTCTCGTATGACCACAAGCTAACGCACGCCACTACAGGAAGCCGCTGAGCTC-- 'Diplodia corticola CBS112549_1' CATCGAGAAGTTCGAGAAGGTAAGCCGATTGTTCTCGCTCCTGCACGTGTGCGGTGCTGCTGCGCACAGCCCGTCTTATCATCGCGCTGGTGAGGGGCATTTTGCGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTTT-GCGACCGGCGTCAGGCCGACACGCCCCTCACTAGCGAGAAATGCCCTGACCACTCAGGTGCTCTCGTATGACCACAAGCTAACGCACGCCACTACAGGAAGCCGCTGAGCTC-- 'Diplodia corticola CBS678_88_2' --------------------TAAGCCGATTATTCCCACTCCTGCACGTGTGCGGTGCTGCTGCGCACAGCCCGTCTTATCATCGCCCTGGTGAGGGGCATTTTTTGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTTTTGCGACCGGCGTCAGGCCGACGCGCCCCTCACTAGCGAGAAATGCCCTGACCACTCATGTGCTCTCGTATGACCACAAGCTAACGCACGCCACTACAGGAAGCCGCTGAGCTC-- 'Diplodia corticola CSC3_2' CATCGAGAAGTTCGAGAAGGTAAGCCGATTATTCCCACTCCTGCACGTGTGCGGTGCTGCTGCGCACAGCCCGTCTTATCATCGCCCTGGTGAGGGGCATTTTTTGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTTTTGCGACCGGCGTCAGGCCGACGCGCCCCTCACTAGCGAGAAATGCCCTGACCACTCATGTGCTCTCGTATGACCACAAGCTAACGCACGCCACTACAGGAAGCCGCTGAGCTC-- 'Diplodia corticola CSC65_2' CATCGAGAAGTTCGAGAAGGTAAGCCGATTATTCCCACTCCTGCACGTGTGCGGTGCTGCTGCGCACAGCCCGTCTTATCATCGCCCTGGTGAGGGGCATTTTTTGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTTTTGCGACCGGCGTCAGGCCGACGCGCCCCTCACTAGCGAGAAATGCCCTGACCACTCATGTGCTCTCGTATGACCACAAGCTAACGCACGCCACTACAGGAAGCCGCTGAGCTC-- 'Diplodia corticola CSC66_2' CATCGAGAAGTTCGAGAAGGTAAGCCGATTATTCCCACTCCTGCACGTGTGCGGTGCTGCTGCGCACAGCCCGTCTTATCATCGCCCTGGTGAGGGGCATTTTTTGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTTTTGCGACCGGCGTCAGGCCGACGCGCCCCTCACTAGCGAGAAATGCCCTGACCACTCATGTGCTCTCGTATGACCACAAGCTAACGCACGCCACTACAGGAAGCCGCTGAGCTC-- Diplodia_quercivora_BL8 CATCGAGAAGTTCGAGAAGGTAAGCTGATTATTCCCGCTCCTGCACGTGTGCGGTGCTGCTGCGCACACCCCGTC---TCCTCGTCCTGGTGAGGGGCATTTTGCGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTT--GCGACCGGCGTCAGGCCGATGCGCCCCTCACTAGCGAGAAATGCCTTGACCACTCATGTGCTCTCGTGTGACCATAAGCTAACGCACGCCACTACAGGAAGCCGCTGAACTC-- Diplodia_quercivora_BL9 CATCGAGAAGTTCGAGAAGGTAAGCTGATTATTCCCGCTCCTGCACGTGTGCGGTGCTGCTGCGCACACCCCGTC---TCCTCGTCCTGGTGAGGGGCATTTTGCGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTT--GCGACCGGCGTCAGGCCGATGCGCCCCTCACTAGCGAGAAATGCCTTGACCACTCATGTGCTCTCGTGTGACCATAAGCTAACGCACGCCACTACAGGAAGCCGCTGAACTC-- 'Diplodia corticola CSC47_2_KX881726' CATCGAGAAGTTCGAGAAGGTAAGCCGATTATTCCCACTCCTGCACGTGTGCGGTGCTGCTGCGCACAGCCCGTCTTATCATCGCCCTGGTGAGGGGCATTTTTTGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTTTTGCGACCGGCGTCAGGCCGACGCGCCCCTCACTAGCGAGAAATGCCCTGACCACTCATGTGCTCTCGTATGACCACAAGCTAACGCACGCCACTACAGGAAGCCGCTGAGCTC-- 'Diplodia corticola CSC50_2_KX881727' CATCGAGAAGTTCGAGAAGGTAAGCCGATTATTCCCACTCCTGCACGTGTGCGGTGCTGCTGCGCACAGCCCGTCTTATCATCGCCCTGGTGAGGGGCATTTTTTGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTTTTGCGACCGGCGTCAGGCCGACGCGCCCCTCACTAGCGAGAAATGCCCTGACCACTCATGTGCTCTCGTATGACCACAAGCTAACGCACGCCACTACAGGAAGCCGCTGAGCTC-- 'Diplodia corticola CSC1_2_KX881728' CATCGAGAAGTTCGAGAAGGTAAGCCGATTATTCCCACTCCTGCACGTGTGCGGTGCTGCTGCGCACAGCCCGTCTTATCATCGCCCTGGTGAGGGGCATTTTTTGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTTTTGCGACCGGCGTCAGGCCGACGCGCCCCTCACTAGCGAGAAATGCCCTGACCACTCATGTGCTCTCGTATGACCACAAGCTAACGCACGCCACTACAGGAAGCCGCTGAGCTC-- 'Diplodia corticola CSC8_2_KX881729' CATCGAGAAGTTCGAGAAGGTAAGCCGATTATTCCCACTCCTGCACGTGTGCGGTGCTGCTGCGCACAGCCCGTCTTATCATCGCCCTGGTGAGGGGCATTTTTTGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTTTTGCGACCGGCGTCAGGCCGACGCGCCCCTCACTAGCGAGAAATGCCCTGACCACTCATGTGCTCTCGTATGACCACAAGCTAACGCACGCCACTACAGGAAGCCGCTGAGCTC-- 'Diplodia corticola CSC7_1_KX881730' CATCGAGAAGTTCGAGAAGGTAAGCCGATTGTTCTCGCTCCTGCACGTGTGCGGTGCTGCTGCGCACAGCCCGTCTTATCATCGCGCTGGTGAGGGGCATTTTGCGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTTT-GCGACCGGCGTCAGGCCGACACGCCCCTCACTAGCGAGAAATGCCCTGACCACTCAGGTGCTCTCGTATGACCACAAGCTAACGCACGCCACTACAGGAAGCCGCTGAGCTC-- 'Diplodia corticola CSC78_1_KX881731' CATCGAGAAGTTCGAGAAGGTAAGCCGATTGTTCTCGCTCCTGCACGTGTGCGGTGCTGCTGCGCACAGCCCGTCTTATCATCGCGCTGGTGAGGGGCATTTTGCGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTTT-GCGACCGGCGTCAGGCCGACACGCCCCTCACTAGCGAGAAATGCCCTGACCACTCAGGTGCTCTCGTATGACCACAAGCTAACGCACGCCACTACAGGAAGCCGCTGAGCTC-- 'Diplodia corticola CSC227_1_KX881732' CATCGAGAAGTTCGAGAAGGTAAGCCGATTGTTCTCGCTCCTGCACGTGTGCGGTGCTGCTGCGCACAGCCCGTCTTATCATCGCGCTGGTGAGGGGCATTTTGCGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTTT-GCGACCGGCGTCAGGCCGACACGCCCCTCACTAGCGAGAAATGCCCTGACCACTCAGGTGCTCTCGTATGACCACAAGCTAACGCACGCCACTACAGGAAGCCGCTGAGCTC-- 'Diplodia corticola CSC23_1_KX881733' CATCGAGAAGTTCGAGAAGGTAAGCCGATTGTTCTCGCTCCTGCACGTGTGCGGTGCTGCTGCGCACAGCCCGTCTTATCATCGCGCTGGTGAGGGGCATTTTGCGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTTT-GCGACCGGCGTCAGGCCGACACGCCCCTCACTAGCGAGAAATGCCCTGACCACTCAGGTGCTCTCGTATGACCACAAGCTAACGCACGCCACTACAGGAAGCCGCTGAGCTC-- 'Diplodia corticola CSC40_1_KX881734' CATCGAGAAGTTCGAGAAGGTAAGCCGATTGTTCTCGCTCCTGCACGTGTGCGGTGCTGCTGCGCACAGCCCGTCTTATCATCGCGCTGGTGAGGGGCATTTTGCGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTTT-GCGACCGGCGTCAGGCCGACACGCCCCTCACTAGCGAGAAATGCCCTGACCACTCAGGTGCTCTCGTATGACCACAAGCTAACGCACGCCACTACAGGAAGCCGCTGAGCTC-- 'Diplodia corticola CSC24_2_KX881735' CATCGAGAAGTTCGAGAAGGTAAGCCGATTATTCCCACTCCTGCACGTGTGCGGTGCTGCTGCGCACAGCCCGTCTTATCATCGCCCTGGTGAGGGGCATTTTTTGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTTTTGCGACCGGCGTCAGGCCGACGCGCCCCTCACTAGCGAGAAATGCCCTGACCACTCATGTGCTCTCGTATGACCACAAGCTAACGCACGCCACTACAGGAAGCCGCTGAGCTC-- 'Diplodia corticola CSC9_2_KX881736' CATCGAGAAGTTCGAGAAGGTAAGCCGATTATTCCCACTCCTGCACGTGTGCGGTGCTGCTGCGCACAGCCCGTCTTATCATCGCCCTGGTGAGGGGCATTTTTTGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTTTTGCGACCGGCGTCAGGCCGACGCGCCCCTCACTAGCGAGAAATGCCCTGACCACTCATGTGCTCTCGTATGACCACAAGCTAACGCACGCCACTACAGGAAGCCGCTGAGCTC-- 'Diplodia corticola CSC2_2_KX881737' CATCGAGAAGTTCGAGAAGGTAAGCCGATTATTCCCACTCCTGCACGTGTGCGGTGCTGCTGCGCACAGCCCGTCTTATCATCGCCCTGGTGAGGGGCATTTTTTGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTTTTGCGACCGGCGTCAGGCCGACGCGCCCCTCACTAGCGAGAAATGCCCTGACCACTCATGTGCTCTCGTATGACCACAAGCTAACGCACGCCACTACAGGAAGCCGCTGAGCTC-- 'Diplodia corticola CSC28_2_KX881738' CATCGAGAAGTTCGAGAAGGTAAGCCGATTATTCCCACTCCTGCACGTGTGCGGTGCTGCTGCGCACAGCCCGTCTTATCATCGCCCTGGTGAGGGGCATTTTTTGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTTTTGCGACCGGCGTCAGGCCGACGCGCCCCTCACTAGCGAGAAATGCCCTGACCACTCATGTGCTCTCGTATGACCACAAGCTAACGCACGCCACTACAGGAAGCCGCTGAGCTC-- 'Diplodia corticola CSC38_1_KX881739' CATCGAGAAGTTCGAGAAGGTAAGCCGATTGTTCTCGCTCCTGCACGTGTGCGGTGCTGCTGCGCACAGCCCGTCTTATCATCGCGCTGGTGAGGGGCATTTTGCGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTTT-GCGACCGGCGTCAGGCCGACACGCCCCTCACTAGCGAGAAATGCCCTGACCACTCAGGTGCTCTCGTATGACCACAAGCTAACGCACGCCACTACAGGAAGCCGCTGAGCTC-- 'Diplodia corticola CSC14_2_KX881741' CATCGAGAAGTTCGAGAAGGTAAGCCGATTATTCCCACTCCTGCACGTGTGCGGTGCTGCTGCGCACAGCCCGTCTTATCATCGCCCTGGTGAGGGGCATTTTTTGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTTTTGCGACCGGCGTCAGGCCGACGCGCCCCTCACTAGCGAGAAATGCCCTGACCACTCATGTGCTCTCGTATGACCACAAGCTAACGCACGCCACTACAGGAAGCCGCTGAGCTC-- 'Diplodia corticola CSC63_2_KX881742' CATCGAGAAGTTCGAGAAGGTAAGCCGATTATTCCCACTCCTGCACGTGTGCGGTGCTGCTGCGCACAGCCCGTCTTATCATCGCCCTGGTGAGGGGCATTTTTTGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTTTTGCGACCGGCGTCAGGCCGACGCGCCCCTCACTAGCGAGAAATGCCCTGACCACTCATGTGCTCTCGTATGACCACAAGCTAACGCACGCCACTACAGGAAGCCGCTGAGCTC-- 'Diplodia corticola CSC4_2_KX881743' CATCGAGAAGTTCGAGAAGGTAAGCCGATTATTCCCACTCCTGCACGTGTGCGGTGCTGCTGCGCACAGCCCGTCTTATCATCGCCCTGGTGAGGGGCATTTTTTGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTTTTGCGACCGGCGTCAGGCCGACGCGCCCCTCACTAGCGAGAAATGCCCTGACCACTCATGTGCTCTCGTATGACCACAAGCTAACGCACGCCACTACAGGAAGCCGCTGAGCTC-- ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 286; END; BEGIN NOTES; TAXABITS NAME = newlyAddedTaxon on = 1 - 49; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 286; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 286; END; BEGIN TREES; Title Diplodia_corticola_and_other_Botryosphaeriaceae_MPhr; ID 01617eb7862182; LINK Taxa = Taxa; TRANSLATE [0] 1 'Diplodia corticola BOT17_2', [1] 2 'Diplodia corticola BOT18_1', [2] 3 'Diplodia corticola BOT2_1', [3] 4 'Diplodia corticola BOT22_2', [4] 5 'Diplodia corticola BOT23_1', [5] 6 'Diplodia corticola BOT24_1', [6] 7 'Diplodia corticola BOT25_2', [7] 8 'Diplodia corticola BOT26_1', [8] 9 'Diplodia corticola BOT28_1', [9] 10 'Diplodia corticola BOT29_1', [10] 11 'Diplodia corticola BOT30_1', [11] 12 'Diplodia corticola BOT3_1', [12] 13 'Diplodia corticola BOT31_2', [13] 14 'Diplodia corticola BOT32_2', [14] 15 'Diplodia corticola BOT33_2', [15] 16 'Diplodia corticola BOT34_1', [16] 17 'Diplodia corticola BOT35_2', [17] 18 'Diplodia corticola BOT39_1', [18] 19 'Diplodia corticola BOT40_1', [19] 20 'Diplodia corticola BOT4_1', [20] 21 'Diplodia corticola BOT5_1', [21] 22 'Diplodia corticola BOT6_2', [22] 23 'Diplodia corticola BOT7_1', [23] 24 'Diplodia corticola BOT8_1', [24] 25 'Diplodia corticola BOT9_2', [25] 26 'Diplodia corticola CBS112549_1', [26] 27 'Diplodia corticola CBS678_88_2', [27] 28 'Diplodia corticola CSC3_2', [28] 29 'Diplodia corticola CSC65_2', [29] 30 'Diplodia corticola CSC66_2', [30] 31 Diplodia_quercivora_BL8, [31] 32 Diplodia_quercivora_BL9, [32] 33 'Diplodia corticola CSC47_2_KX881726', [33] 34 'Diplodia corticola CSC50_2_KX881727', [34] 35 'Diplodia corticola CSC1_2_KX881728', [35] 36 'Diplodia corticola CSC8_2_KX881729', [36] 37 'Diplodia corticola CSC7_1_KX881730', [37] 38 'Diplodia corticola CSC78_1_KX881731', [38] 39 'Diplodia corticola CSC227_1_KX881732', [39] 40 'Diplodia corticola CSC23_1_KX881733', [40] 41 'Diplodia corticola CSC40_1_KX881734', [41] 42 'Diplodia corticola CSC24_2_KX881735', [42] 43 'Diplodia corticola CSC9_2_KX881736', [43] 44 'Diplodia corticola CSC2_2_KX881737', [44] 45 'Diplodia corticola CSC28_2_KX881738', [45] 46 'Diplodia corticola CSC38_1_KX881739', [46] 47 'Diplodia corticola CSC14_2_KX881741', [47] 48 'Diplodia corticola CSC63_2_KX881742', [48] 49 'Diplodia corticola CSC4_2_KX881743'; TREE PAUP_1 = ((31:0.0,32:0.0):0.0,((2:0.0,3:0.0,5:0.0,6:0.0,8:0.0,9:0.0,10:0.0,11:0.0,12:0.0,16:0.0,18:0.0,19:0.0,20:0.0,21:0.0,23:0.0,24:0.0,26:0.0,37:0.0,38:0.0,39:0.0,40:0.0,41:0.0,46:0.0):14,(1:0.0,4:0.0,7:0.0,13:0.0,14:0.0,15:0.0,17:0.0,22:0.0,25:0.0,27:0.0,28:0.0,29:0.0,30:0.0,33:0.0,34:0.0,35:0.0,36:0.0,42:0.0,43:0.0,44:0.0,45:0.0,47:0.0,48:0.0,49:0.0):12):0.0)[% ] [%unrooted = on ] [%unrooted = on ] [% setBetweenBits = selected ]; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1518249642963; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 426476617396697003; tell It; setDefaultOrder 14 36 30 15 37 38 16 39 40 41 42 31 17 18 19 43 20 44 45 32 33 12 34 35 13 46 21 1 4 5 47 48 22 11 10 9 29 28 27 26 25 23 8 7 6 24 3 2 0; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 2244035052253917812; mqVersion 330; checksumv 0 3 4263237383 null getNumChars 286 numChars 286 getNumTaxa 49 numTaxa 49 short true bits 15 states 15 sumSquaresStatesOnly 278691.0 sumSquares 278691.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState true false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1171 722; setLocation 111 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #2244035052253917812 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 0 -72; setLocation 111 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; getWindow; tell It; forceAutosize; endTell; hideWindow; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;