#NEXUS [written Fri Jan 12 14:56:00 CET 2018 by Mesquite version 3.2 (build 801) at HG17209/172.30.18.79] BEGIN TAXA; TITLE 'Tropidurus_COI'; DIMENSIONS NTAX=19; TAXLABELS Plica_plica_AMCC_106953 T_teyumirim_AMNHFS_20284 T_teyumirim_AMNHFS_20281 T_tarara_SMF_103316 T_tarara_SMF_103315 T_tarara_SMF_103314 T_tarara_SMF_103313 T_spinulosus_IIBPH_3463 T_spinulosus_SMF_100094 T_lagunablanca_SMF_103320 T_guarani_SMF_100096 T_guarani_SMF_100095 T_etheridgei_SMF_101596 T_etheridgei_SMF_101595 T_catalanensis_SMF_100093 T_catalanensis_SMF_100090 T_spinulosus_AMCC_204478 T_catalanensis_UFRGST_2890 T_etheridgei_LG_1096 ; END; BEGIN CHARACTERS; TITLE 'COI_Matrix'; DIMENSIONS NCHAR=566; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Plica_plica_AMCC_106953 CGGCACTGCCCTAAGCCTTCTAATTCGAGCAGAATTAAGTCAACCAGGGGCTCTTCTTGGAGACGACCAAATTTATAATGTTATTGTAACAGCCCACGCCTTTGTAATAATTTTTTTTATAGTTATGCCAGTAATAATTGGAGGATTTGGAAATTGACTAGTTCCATTAATAATCGGCGCTCCAGATATAGCTTTTCCCCGAATAAACAACATAAGCTTTTGATTACTTCCTCCGTCATTCCTTCTCCTTCTAGCTTCGTCTGGAGTTGAAGCTGGAGCTGGTACTGGGTGGACTGTATACCCCCCACTAGCAGGAAATCTGGCCCACGCAGGCGCCTCAGTTGATCTTACAATCTTCTCTCTCCATTTGGCAGGAGTATCATCAATCTTAGGTGCAATTAACTTCATTACAACCTGCATCAACATAAAATCTACAACAATAAGCCAGTATCAGACTCCTCTTTTTGTTTGATCTGTACTAATTACCGCCGTTCTACTCCTATTGTCTTTACCAGTCCTTGCAGCAGGCATTACCATACTCCTTACAGACCGAAACTTAAATACTT T_teyumirim_AMNHFS_20284 GGGTACAGCCCTAAG-CTCCTAATTCGAGCGGAGCTAGTCCAGCCT-GGGCCTTACTTGGCGACGATCAAATTTATAACGTAATTGTTACAGCACACGCCTTTGTCAT-ATCTTCTTCATAGTTATTACCAGTAT-ATCGGAGGATT--GGAACTGACTAGTCCCCCTAATAATCGGCGCCCCGGACATAGCATTTCCACGAATAAACAATATAAGTTTCTGACTTCTTCCTCCCTCCCTCCTTCTTCTCATTGCATCATCTGGGGTGGAAGCTGGGGCTGGGACAGGTTGAACAGTCTATCCTCCACTAGCAGGAAATCTAGCACATGCAGGCGCCTCTGTAGACCTTACAATTTTTTCCCTACATCTTGCAGGAGTATCATCCATCTTAGGGGCAATTAACTTTATTACCACCTGTATTAACATAAAAACTACAACAATAACCCAGTATCAAACCCCATTATTTGTATGGTCCGTCCTAATTACAGCCGTATTGCTTCTACTCTCCCTCCCAGTCCTAGCGGCAGGAATCACCATACTCCTAACCGACCGAAACCTTAACACCA T_teyumirim_AMNHFS_20281 ??????AGCCCTAAGCCTCCTAATTCGAGCGGAGCTAA--CCACCTGGGGCCTTACTTGGCGATGATCAAATTTATAACGTAATTGTTACAGCACACGCCTTTGTCATAATCTTCTTCATAGTTATACCAGTAATAATCGGAGGATTTGGAAACTGACTAGTCCCCCTAATAATCGGCGCCCCGGACATAGCATTTCCACGAATAAACAATATAAGTTTCTGACTTCTTCCTCCCTCCCTCCTTCTTCTCATTGCATCATCTGGGGTGGAAGCTGGGGCTGGGACAGGTTGAACAGTCTACCCTCCACTAGCAGGAAATCTAGCACATGCAGGCGCCTCTGTAGACCTTACAATTTTTTCCCTACATCTTGCAGGGGTATCATCCATCTTAGGGGCAATTAACTTTATCACCACCTGTATCAACATAAAAACTACAACAATAACCCAGTATCAAACCCCATTATTTGTATGGTCCGTCCTAATCACAGCCGTATTGCTTCTACTCTCCCTCCCAGTCCTAGCGGCAGGAATCACCATACTCCTAACCGACCGAAACCTTAACACCA T_tarara_SMF_103316 GGGTACAGCCCTAAGCCTCCTAATTCGAGCGGAATTAAGCCAGCCTGGGGCCTTACTTGGCGACGATCAAATCTATAACGTAA?TGTTACAGCACACGCCTTTGTCATAATCTTCTTCATAGTTATACCAGTAATAATCGGAGGGTTTGGAAACTGACTGGTCCCCCTAATAATCGGCGCCCCGGACATAGCATTTCCACGAATGAACAATATAAGTTTCTGACTTCTTCCTCCCTCCCTCCTTCTCCTCATTGCATCATCTGGGGTGGAAGCTGGGGCTGGGACAGGTTGAACAGTCTATCCGCCACTAGCAGGAAATCTAGCACATGCAGGCGCCTCTGTAGACCTTACAATTTTTTCCCTAC?TCTTGCAGGGGTATCGTCCATCTTAGGGGCAATTAACTTTATCACCACCTGTATTAACATAAAAACTACAACAATAACCCAGTATCAAACCCCACTATTTGTGTGATCCGTCCTAATTACAGCCGTATTGCTTCTACTT-CCCTCCCAGTTTTAGCAGCAGGAATCACCATACTCCTAACCGACCGAAACCTTAACACC? T_tarara_SMF_103315 GGGTACAGCCTAG----CTCCTAATCGAGCGGAATTAAGCCAGCCTGGGGCCTTACTTGGCGACGATCAAATCTATAACGTAATTGTTACAGCACACGCCTTTGTCATAATCTTCTTCATAGTTATACCAGTAATAATCGGAGGG-TTGGAAACTGACTGGTCCCCCTAATAATCGGCGCCCCGGACATAGCATTTCCACGAATGAACAATATAAGTTTCTGACTTCTTCCTCCCTCCCTCCTTCTTCTCATTGCATCATCTGGGGTGGAAGCTGGGGCTGGGACAGGTTGAACAGTCTATCCGCCACTAGCAGGAAATCTAGCACATGCAGGCGCCTCTGTAGACCTTACAATTTTTTCCCTACATCTTGCAGGGGTATCGTCCATCTTAGGGGCAATTAACTTTATCACCACCTGTATTAACATAAAAACTACAACAATAACCCAGTATCAAACCCCACTATTTGTGTGATCCGTCCTAATTACAGCCGTATTGCTTCTACTT--CCTCCCAGTTTTAGCAGCAGGAATCACCATACTCCTAACCGACCGAAACCTTAACACCA T_tarara_SMF_103314 ????????GCCCTAGCCTCCTAATTCGAGCGGAATTAAGCCAGCCTGGGGCCTTACTTGGCGACGATCAAATCTATAACGTAATTGTTACAGCACACGCCTTTGTCATAATCTTCTTCATAGTTATACCAGTAATAATCGGAGGGTTTGGAAACTGACTGGTCCCCCTAATAATCGGCGCCCCGGACATAGCATTTCCACGAATGAACAATATAAGTTTCTGACTTCTTCCTCCCTCCCTCCTTCTTCTCATTGCATCATCTGGGGTGGAAGCTGGGGCTGGGACAGGTTGAACAGTCTATCCGCCACTAGCAGGAAATCTAGCACATGCAGGCGCCTCTGTAGACCTTACAATTTTTTCCCTACATCTTGCAGGGGTATCGTCCATCTTAGGGGCAATTAACTTTATCACCACCTGTATTAACATAAAAACTACAACAATAACCCAGTATCAAACCCCACTATTTGTGTGATCCGTCCTAATTACAGCCGTATTGCTTCTACTTTCCCTCCCAGTTTTAGCAGCAGGAATCACCATACTCCTAACCGACCGAAACCTTA-CACCA T_tarara_SMF_103313 ??????????????????????????????????????????????TGGGCCTTACTTGGCGACGATCAAATCTATAACGTAATTGTTACAGCACACGCCTTTGTCATAATCTTCTTCATAGTTATACCAGTAATAATCGGAGGGTTTGGAAACTGACTGGTCCCCCTAATAATCGGCGCCCCGGACATAGCATTTCCACGAATGAACAATATAAGTTTCTGACTTCTTCCTCCCTCCCTCCTTCTTCTCATTGCATCATCTGGGGTGGAGGCTGGGGCTGGGACAGGTTGAACAGTCTATCCGCCACTAGCAGGAAATCTAGCACATGCAGGCGCCTCTGTAGACCTTACAATTTTTTCCCTACATCTTGCAGGGGTATCGTCCATCTTAGGGGCAATTAACTTTATCACCACTTGTATTAACATAAAAACTACAACAATAACCCAGTATCAGACCCCACTATTTGTGTGATCCGTCCTAATTACAGCCGTATTGCTTCTACTT-CCCTCCCAGTT????????????????????????????????????????????????? T_spinulosus_IIBPH_3463 GGGTACAGCCCTAAGTCTCCTAATTCGAGCAGAATTGAGCCAACCAGGAGCCTTACTTGGCGACGATCAAATCTACAACGTAGTTGTTACAGCACACGCCTTTGTCATAATCTTCTTCATGGTTATACCGGTGATAATCGGAGGGTTTGGAAACTGATTAGTCCCTCTAATAATCGGCGCCCCAGACATAGCATTTCCACGAATAAACAATATAAGTTTCTGACTTCTTCCTCCCTCCCTCCTTCTCCTCATTGCATCATCTGGGGTGGAAGCTGGGGCTGGAACAGGTTGAACAGTTTATCCTCCCCTAGCAGGAAATCTAGCACATGCAGGCGCCTCTGTAGA-CTTACAATTTTCTCCCTACATCTTGCAGGGGTATCATCCATCTTAGGGGCAATTAACTTCATCACCACCTGTATTAACATAAAAGCTGCAACAATAACCCAGTATCAAACCCCCCTATTTGTGTGATCCGTCTTGATTACAGCCGTGTTGCTTCTACTTTCCCTCCCAGTCCTAGCAGCAGGAATTACTATACTACTAACCGACCGAAACCTCAACACCA T_spinulosus_SMF_100094 GGGTACAGCCCTAAGTCTCCTAATTCGAGCGGAATTGAGCCAACCAGGGACCTTACTTGGCGACGATCAAATCTACAACGTAATTGTTACAGCACACGCCTTTGTCATAATCTTCTTCATGGTTATACCGGTAATAATCGGGGGGTTTGGAAACTGATTAGTCCCTCTAATAATCGGCGCCCCAGACATAGCATTTCCACGAATAAACAATATAAGTTTCTGACTTCTTCCTCCCTCCCTTCTTCTCCTCATTGCATCATCTGGGGTAGAAGCTGGGGCTGGAACAGGTTGAACAGTTTACCCACCCCTAGCAGGGAATCTAGCACATGCAGGCGCCTCTGTAGACCTTACAATTTTCTCCCTACATCTTGCAGGGGTATCATCCATCTTAGGGGCAATTAACTTCATCACCACCTGTATTAACATAAAAGCTGCAACAATAACCCAGTATCAAACCCCCCTATTTGTGTGATCCGTCTTGATTACAGCCGTGTTGCTTCTACTTTCCCTCCCAGTCCTAGCAGCAGGCATTACTATACTCCTAACCGACCGAAACCTCAACACCA T_lagunablanca_SMF_103320 GGGTACGGCCT--AAGCTCCTAATTCGAGCGGAATTAAGCCAGCCTGGGGCCCTACTTGGCGACGATCAAATCTATAACGTAATTGTTACAGCACACGCCTTTGTCATAATCTTCTTCATAGTTATACCAGTAATAATCGGAGGGTTTGGAAACTGACTGGTGCCCCTAATAATTGGCGCCCCGGACATAGCATTTCCACGAATAAACAATATAAGTTTCTGACTTCTTCCTCCCTCCCTCCTTCTTCTCATTGCATCATCTGGGGTGGAAGCTGGGGCTGGGACAGGTTGAACAGTCTATCCGCCACTAGCAGGAAATCTAGCACATGCAGGCGCCTCTGTAGACCTTACAATTTTTTCCCTACATCTTGCAGGGGTATCATCCATCTTAGGGGCAATTAACTTTATCACCACCTGTATTAACATAAAAACTACAACAATAACCCAGTATCAAACCCCACTATTTGTGTGATCCGTCCTAATTACAGCCGTATTGCTTCTACTTTCCCTCCCAG-TTTAGCAGCAGGAATCACCATACTCCTAACCGACCGAAACCTTAACACCA T_guarani_SMF_100096 GGGTACAGCCCTAAGTCTCCTAATTCGAGCGGAG?TGAGCCAACCAGGGGCCTTACTTGGCGACGATCAAATCTACAACGTAATTGTTACAGCACACGCCTTTGTCATAATCTTCTTCATGGTTATACCGGTAATAATCGGAGGGTTTGGAAACTGATTAATCCCTCTAATAATCGGCGCCCCAGACATAGCATTTCCACGAATAAACAATATAAGTTTCTGACTTCTTCCTCCCTCCCTTCTTCTCCTCATTGCATCATCTGGGGTGGAAGCTGGGGCTGGAACAGGTTGAACAGTTTACCCACCCCTAGCAGGGAATCTAGCACATGCAGGCGCCTCTGTAGACCTTACAATTTTCTCCCTACATCTTGCAGGGGTATCATCCATCTTAGGGGCAATTAACTTCATCACCACCTGTATTAACATAAAAGCTGCAACAATAACCCAGTATCAAACCCCCCTATTTGTGTGATCCGTCTTAATTACAGCCGTGTTGCTTCTACTTTCCCTCCCAGTCCTAGCAGCAGGCATTACTATACTCCTAACCGACCGAAACCTAAACACCA T_guarani_SMF_100095 GGGTACAGCCCTAAGTCTCCTAATTCGAGCGGAGTTGAGCCAACCAGGGGCCTTACTTGGCGACGATCAAATCTACAACGTAATTGTTACAGCACACGCCTTTGTCATAATCTTCTTCATGGTTATACCGGTAATAATCGGAGGGTTTGGAAACTGATTAATCCCTCTAATAATCGGCGCCCCAGACATAGCATTTCCACGAATAAACAATATAAGTTTCTGACTTCTTCCTCCCTCCCTTCTTCTCCTCATTGCATCATCTGGGGTGGAAGCTGGGGCTGGAACAGGTTGAACAGTTTACCCACCCCTAGCAGGGAATCTAGCACATGCAGGCGCCTCTGTAGACCTTACAATTTTCTCCCTACATCTTGCAGGGGTATCATCCATCTTAGGGGCAATTAACTTCATCACCACCTGTATTAACATAAAAGCTGCAACAATAACCCAGTATCAAACCCCCCTATTTGTGTGATCCGTCTTAATTACAGCCGTGTTGCTTCTACTTTCCCTCCCAGTCCTAGCAGCAGGCATTACTATACTCCTAACCGACCGAAACCTAAACACCA T_etheridgei_SMF_101596 CGGCACCGCCTTAAGCCTTTTAATCCGAGCAGAACTAAGCCAACCCGGCTCTCTTCTCGGCGATGACCAAATCTATAACGTCATTGTAACAGCCCACGCTTTTGTTATGATCTTCTTCATAGTTATGCCTGTTATAATTGGAGGATTTGGAAACTGACTAGTACCCCTAATAATTGGAGCCCCAGACATAGCATTCCCACGAATAAACAACATAAGCTTTTGACTTCTTCCCCCCTCTTTTCTATTACTTTTAGCCTCCTCAGGAGTAGAGGCAGGAGCCGGAACAGGATGAACAGTCTACCCCCCCCTTGCAGGAAACCTGGCACACGCCGGAGCCTCAGTAGACCTAACAATCTTTTCCCTCCACCTGGCTGGTGTCTCCTCAATTTTAGGGGCAATTAATTTTATTACAACCTGCATTAATATAAAAACCACAGCAATAACCCAATACCAAACTCCCCTATTTGTATGATCCGTCCTTATTACTGCAGTTCTTCTTCTCCTGTCCCTCCCAGTTTTAGCAGCAGGAATTACAATGCTCCTAACAGATCGAAATCTTAATACAT T_etheridgei_SMF_101595 ?????????????????TTTTAATCCGAGCAGAACTAAGCCAACCCGGATCTCTTCTCGGCGATGACCAAATCTATAACGTCATTGTAACAGCCCACGCTTTTGTTATGATCTTCTTCATAGTTATGCCTGTTATAATTGGAGGATTTGGAAACTGACTAGTACCCCTAATAATTGGAGCCCCAGACATAGCATTCCCACGAATAAACAACATAAGCTTTTGACTTCTTCCCCCCTCTTTTCTATTACTTTTAGCCTCCTCAGGAGTAGAGGCAGGAGCCGGAACAGGATGAACAGTCTACCCCCCCCTTGCAGGAAACCTGGCACACGCCGGAGCCTCAGTAGATCTAACAATCTTTTCCCTCCACCTGGCTGGTGTCTCCTCAATTTTAGGGGCAATTAATTTTATTACAACCTGCATTAATATAAAAACCACAGCAATAACCCAATACCAAACTCCCCTATTTGTATGATCCGTCCTTATTACTGCAGTTCTTCTTCTCCTGTCCCTCCCAG-TTTAGCAGCAGGAATTACAATGCTCCTAACAGATCGAAATCTTAATACAT T_catalanensis_SMF_100093 CGGCACTGCCTTAAGCCTTTTAATCCGAGCAGAGCTAAGCCAGCCCGGCTCTCTTCTCGGCGACGATCAAATCTATAACGTTATTGTAACAGCCCACGCTTTTGTTATAATCTTCTTCATAGTTATACCTGTCATAATTGGCGGATTTGGAAACTGATTAATCCCACTAATAATTGGGGCCCCAGATATGGCATTTCCACGAATAAACAACATAAGCTTTTGACTTCTTCCCCCTTCTTTTCTATTACTCTTAGCCTCCTCAGGGGTAGAAGCAGGAGCCGGGACAGGATGAACAGTCTACCCCCCCCTTGCAGGAAACCTAGCGCACGCCGGAGCCTCAGTCGACCTAACAATCTTTTCCCTACACTTAGCAGGTGTCTCCTCAATCTTAGGGGCAATTAATTTTATTACAACCTGCATTAATATAAAAACCACAGCAATAACCCAATACCAAACCCCACTATTTGTATGGTCCGTCCTTATTACTGCAGTCCTTCTTCTCCTCTCTCTCCCCG-TTTAGCAGCAGGTATTACAATACTCCTAACAGACCGAAATCTCAACACAT T_catalanensis_SMF_100090 ??GCACTGCCTTAAGCCTTTTAATCCGAGCAGAGCTAAGCCAGCCCGGCTCTCTTCTCGGCGACGATCAAATCTATAACGTTATTGTAACAGCCCACGCTTTTGTTATAATCTTCTTCATAGTTATACCTGTCATAATTGGCGGATTTGGAAACTGATTAATCCCACTAATAATTGGGGCCCCAGATATGGCATTTCCACGAATAAACAACATAAGCTTTTGACTTCTCCCCCCTTCTTTTCTATTACTCTTAGCCTCCTCAGGGGTAGAAGCAGGAGCCGGGACAGGATGAACAGTCTACCCCCCCCTTGCAGGAAACCTAGCGCACGCCGGAGCCTCAGTCGACCTAACAATCTTTTCCCTACACTTAGCAGGTGTCTCCTCAATCTTAGGAGCAATTAATTTTATTACAACCTGCATTAATATAAAAACCACAGCAATAACCCAATACCAAACCCCACTATTTGTATGGTCCGTCCTTATTACTGCAGTCCTTCTTCTCCTCTCTCTCCCAGTTTTAGCAGCAGGTATTACAATACTCCTAACAGACCGAAATCTCAACACAT T_spinulosus_AMCC_204478 GGGTACAGCCCTAAGTCTCCTAATTCGAGCGGAATTGAGCCAACCAGGGGCCTTACTTGGCGACGATCAAATCTACAACGTAATTGTTACAGCACACGCCTTTGTCATAATCTTCTTCATGGTTATACCGGTAATAATCGGGGGATTTGGAAACTGATTAGTCCCTCTAATAATCGGCGCCCCAGACATAGCATTTCCACGAATAAACAATATAAGTTTCTGACTTCTTCCTCCCTCCCTTCTTCTCCTCATTGCATCATCTGGGGTAGAAGCTGGGGCTGGAACAGGTTGAACAGTTTACCCACCCCTAGCAGGGAATCTAGCACATGCAGGCGCCTCTGTAGACCTTACAATTTTCTCCCTACATCTTGCAGGGGTATCATCCATCTTAGGGGCAATTAACTTCATCACCACCTGTATTAACATAAAAGCTGCAACAATAACCCAGTATCAAACCCCCCTATTTGTGTGATCCGTCTTGATTACAGCCGTGTTGCTTCTACTTTCCCTCCCAGTCCTAGCAGCAGGCATTACTATACTCCTAACCGACCGAAACCTCAACACCA T_catalanensis_UFRGST_2890 CGGCACTGCCTTAAGCCTTTTAATCCGAGCAGAGCTAAGCCAGCCCGGCTCTCTTCTCGGCGACGATCAAATCTATAACGTTATTGTAACAGCCCACGCTTTTGTTATAATCTTCTTCATAGTTATACCTGTCATAATTGGCGGATTTGGAAACTGATTAATCCCACTAATAATTGGGGCCCCAGATATGGCATTTCCACGAATAAACAACATAAGCTTTTGACTTCTTCCCCCTTCTTTTCTATTACTCTTAGCCTCCTCAGGAGTAGAAGCAGGAGCCGGGACAGGATGAACAGTCTACCCCCCCCTTGCAGGAAACCTAGCGCACGCCGGAGCCTCAGTCGACCTAACAATCTTTTCCCTACACTTAGCAGGTGTCTCCTCAATTTTAGGGGCAATTAATTTTATTACAACCTGCATTAATATAAAAACCACAGCAATAACCCAATACCAAACCCCACTATTTGTATGGTCCGTCCTTATTACTGCAGTCCTTCTTCTCCTCTCTCTCCCCGTTTTAGCAGCAGGTATTACAATACTCCTAACAGACCGAAATCTCAACACAT T_etheridgei_LG_1096 CGGCACCGCCTTAAGCCTTTTAATCCGAGCAGAACTAAGCCAACCCGGCTCTCTTCTCGGCGATGACCAAATCTATAACGTCATTGTAACAGCCCACGCTTTTGTTATGATCTTCTTCATAGTTATGCCTGTTATAATCGGAGGATTTGGAAACTGACTAGTACCCCTAATAATTGGAGCCCCAGACATAGCATTCCCACGAATAAACAACATAAGCTTTTGACTTCTTCCCCCCTCTTTTCTATTACTTTTAGCCTCCTCAGGAGTAGAGGCAGGAGCCGGAACAGGATGAACAGTCTACCCCCCCCTTGCAGGAAACCTGGCACACGCCGGAGCCTCAGTAGACCTAACAATCTTTTCCCTCCACCTGGCTGGTGTCTCCTCAATTTTAGGGGCAATTAATTTTATTACAACCTGCATTAATATAAAAACCACAGCAATAACCCAATACCAAACTCCCCTATTTGTATGATCCGTCCTTATTACTGCAGTTCTTCTTCTCCTGTCCCTCCCAGTTTTAGCAGCAGGAATTACAATGCTCCTAACAGATCGAAATCTTAATACAT ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 566; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 566; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 566; END; BEGIN TREES; Title 'COI_BI_Tree'; ID 0160eaa5c87e11; LINK Taxa = 'Tropidurus_COI'; TRANSLATE [0] 1 Plica_plica_AMCC_106953, [1] 2 T_teyumirim_AMNHFS_20284, [2] 3 T_teyumirim_AMNHFS_20281, [3] 4 T_tarara_SMF_103316, [4] 5 T_tarara_SMF_103315, [5] 6 T_tarara_SMF_103314, [6] 7 T_tarara_SMF_103313, [7] 8 T_spinulosus_IIBPH_3463, [8] 9 T_spinulosus_SMF_100094, [9] 10 T_lagunablanca_SMF_103320, [10] 11 T_guarani_SMF_100096, [11] 12 T_guarani_SMF_100095, [12] 13 T_etheridgei_SMF_101596, [13] 14 T_etheridgei_SMF_101595, [14] 15 T_catalanensis_SMF_100093, [15] 16 T_catalanensis_SMF_100090, [16] 17 T_spinulosus_AMCC_204478, [17] 18 T_catalanensis_UFRGST_2890, [18] 19 T_etheridgei_LG_1096; TREE con_50_majrule = (1:0.235928,((13:0.001328,14:0.005134,19:0.003068):0.059253,((15:0.001382,18:0.003867):0.003456,16:0.005771):0.041167):0.205868,((2:0.02454,3:0.012133):0.019417,((4:0.003051,(5:0.012816,7:0.011154):0.008833,6:0.006088):0.004843,10:0.015998):0.010426,(8:0.01236,((9:0.003154,17:0.003199):0.00522,(11:0.001331,12:0.001292):0.009013):0.010436):0.052328):0.161016); END; BEGIN TREES; Title 'COI_ML_Tree'; ID 0160eaa5e3b812; LINK Taxa = 'Tropidurus_COI'; TRANSLATE [0] 1 Plica_plica_AMCC_106953, [1] 2 T_teyumirim_AMNHFS_20284, [2] 3 T_teyumirim_AMNHFS_20281, [3] 4 T_tarara_SMF_103316, [4] 5 T_tarara_SMF_103315, [5] 6 T_tarara_SMF_103314, [6] 7 T_tarara_SMF_103313, [7] 8 T_spinulosus_IIBPH_3463, [8] 9 T_spinulosus_SMF_100094, [9] 10 T_lagunablanca_SMF_103320, [10] 11 T_guarani_SMF_100096, [11] 12 T_guarani_SMF_100095, [12] 13 T_etheridgei_SMF_101596, [13] 14 T_etheridgei_SMF_101595, [14] 15 T_catalanensis_SMF_100093, [15] 16 T_catalanensis_SMF_100090, [16] 17 T_spinulosus_AMCC_204478, [17] 18 T_catalanensis_UFRGST_2890, [18] 19 T_etheridgei_LG_1096; TREE tree_1 = (1:0.213461,(((2:0.021528,3:0.010527):0.018873,((4:0.001813,(5:0.014831,(6:0.001896,7:0.00904):0.003581):0.000003):0.0035,10:0.013218):0.007651):0.005239,(8:0.009787,((9:0.001785,17:0.001782):0.003656,(11:0.000003,12:0.000003):0.007206):0.009012):0.046317):0.147403,(((13:0.000003,14:0.003774):0.000003,19:0.001786):0.043629,((15:0.000003,16:0.005424):0.003573,18:0.000003):0.043403):0.190444); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1515765360506; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 7376793260176945046; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 8843193212982180351; mqVersion 320; checksumv 0 3 3098645476 null getNumChars 566 numChars 566 getNumTaxa 19 numTaxa 19 short true bits 15 states 15 sumSquaresStatesOnly 233576.0 sumSquares 233576.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 220; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1157 760; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #7376793260176945046 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 0160eaa5c87e11; toggleUseWeights off; endTell; setAssignedID 2495.1515765231766.5666301102763107882; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 937 688; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; makeTreeWindow #7376793260176945046 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 2; setTreeBlockID 0160eaa5e3b812; toggleUseWeights off; endTell; setAssignedID 2525.1515765236498.8809104395085069483; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 937 688; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #8843193212982180351 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 937 688; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;