#NEXUS [written Fri Jan 12 15:29:35 CET 2018 by Mesquite version 3.2 (build 801) at HG17209/172.30.18.79] BEGIN TAXA; TITLE 'Tropidurus_Concatenated_mt'; DIMENSIONS NTAX=20; TAXLABELS Plica_plica_AMCC_106953 T_catalanensis_SMF_100093 T_catalanensis_SMF_100090 T_catalanensis_UFRGST_2890 T_etheridgei_SMF_101595 T_etheridgei_SMF_101596 T_etheridgei_LG_1096 T_guarani_SMF_100095 T_guarani_SMF_100096 T_spinulosus_SMF_100094 T_spinulosus_AMCC_204478 T_spinulosus_PCS_312 T_spinulosus_IIBPH_3463 T_lagunablanca_SMF_103320 T_tarara_SMF_103313 T_tarara_SMF_103314 T_tarara_SMF_103315 T_tarara_SMF_103316 T_teyumirim_AMNHFS_20281 T_teyumirim_AMNHFS_20284 ; END; BEGIN CHARACTERS; TITLE 'ConMT_Matrix'; DIMENSIONS NCHAR=1507; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Plica_plica_AMCC_106953 TTCAACGGCCGCGGTATCCTAACCGTGCAAAGGTAGCGTAA?CATTTGTCCTCTAAATAAGGACCAGTATGAATGGCTAAATGCGGACCAATCTGTCTCCTTTAACCAACCAGTGAAACTGATCTACCAGTACAAAAGCTGGTATAGCAATATAAGACGAGAAGACCCTGTGGAGCTTAAAATTATAA-TCA--------------CACCAA--CCTCTAATCATTAAGCCTTGACCTATAATTTTCAGTTGGGGCGACTTTGGAACTAAGCCAAACTTCCAAGCAAAATAGACCTAAATCTTAACCAAGACCAACAAGTCT-AACAAAATGACCCAGTAAAACTGATCAACGAACCAAGTTACCCCAGGGATAACAG?GCAATCTTCTTCAAGAGTCCATATCGACAAGAAGGTTTACGACCTCGATGTTGGATCAGGACACCCAATTGGTGCAGCCGCTATTAAA?????????????????????????????GCCCTAAGCCTTCTAATTCGAGCAGAATTAAGTCAACCAGGGGCTCTTCTTGGAGACGACCAAATTTATAATGTTATTGTAACAGCCCACGCCTTTGTAATAATTTTTTTTATAGTTAT-GCCAGTAATAATTGGAGGATTTGGAAATTGACTAGTTCCATTAATAATCGGCGCTCCAGATATAGCTTTTCCCCGAATAAACAACATAAGCTTTTGATTACTTCCTCCGTCATTCCTTCTCCTTCTAGCTTCGTCTGGAGTTGAAGCTGGAGCTGGTACTGGGTGGACTGTATACCCCCCACTAGCAGGAAATCTGGCCCACGCAGGCGCCTCAGTTGATCTTACAATCTTCTCTCTCCATTTGGCAGGAGTATCATCAATCTTAGGTGCAATTAACTTCATTACAACCTGCATCAACATAAAATCTACAACAATAAGCCAGTATCAGACTCCTCTTTTTGTTTGATCTGTACTAATTACCGCCGTTCTACTCCTATTGTCTTTACCAGTCCTTGCAGCAGGCATTACCATACTCCTTACAGACCGAAACTTAAATACTTCAGACAGGGACGCAGGGAGAGGAAGGGGGGAGAGGCCGGCCCGGGGGGCAGAGAAGCGGAAAGAGGCCCAGAAGCCACCGGAGCGG-AAAACACCGGAGAGCCAG-GAGGGGCAAACGAAGGGGGGGACAAAAGGCACACCAGAAACCCCAAACACAGACGGGGAAGGACAGGGCCCGGGGCGCAGCAGGGGGGGGCCACGGGCAGCCACGGGGCCGGGGGCGCAGCGGCCAAACGGGCCACCGCCGAACGGCGGCAGGCAGGAGGCCACAGGGCCAGGGAAAAGAGCACGCAGGGCCAGGAACAGAAACAGAGCACCGGGGGGGAGGAGGAGGGAAGAAACACGGCAGGAGGCCCAACCGCCGAGAACCACGGAAACGAGGAGCAAAGGAACACGAGAGGAGGGGACAAACGGGCCGGGCAAGGGGCACAGGGACCAAACAGGAGGGCAG T_catalanensis_SMF_100093 TTAAACGGCCGCGGTATCCTAACCGTGCAAAGGTAGCGAAATCATTTGTCCTCTAAATAAGGACCAGTATGAATGGCTAAATGAGGGCTAACCTGTCTCCTTTAACCTATCAGTGAAACTGATCTACCAGTACAAAAGCTGGTATAACCCCATAAGACGAGAAGACCCTGTGGAGCTTTAAATTAAAAGTCAACGGCAAC-----CTACCAA--CCCCC-CCCGTTA--TCTTGACCCTAAGTTTTTAGTTGGGGCGACTTCGGAACCAAACCAAACTTCCGAGC-AAACGACCTTAAATCTCAA-AAAGACCCACAAGTCTAAACCAAATGACCCAGTAAGACTGATAAACGAACCAAGTTACCCCAGGGATAACAGCGCAATCTTCTTCAAGAGTCCATATCGACAAGAAGGTTTACGACCTCGATGTTGGATCAGGACACCCAATTGGTGCAGCCGCTATTAAAGGTTCGTTTGTTCAACGATTAATAGTCCTGCCTTAAGCCTTTTAATCCGAGCAGAGCTAAGCCAGCCCGGCTCTCTTCTCGGCGACGATCAAATCTATAACGTTATTGTAACAGCCCACGCTTTTGTTATAATCTTCTTCATAGTTAT-ACCTGTCATAATTGGCGGATTTGGAAACTGATTAATCCCACTAATAATTGGGGCCCCAGATATGGCATTTCCACGAATAAACAACATAAGCTTTTGACTTCTTCCCCCTTCTTTTCTATTACTCTTAGCCTCCTCAGGGGTAGAAGCAGGAGCCGGGACAGGATGAACAGTCTACCCCCCCCTTGCAGGAAACCTAGCGCACGCCGGAGCCTCAGTCGACCTAACAATCTTTTCCCTACACTTAGCAGGTGTCTCCTCAATCTTAGGGGCAATTAATTTTATTACAACCTGCATTAATATAAAAACCACAGCAATAACCCAATACCAAACCCCACTATTTGTATGGTCCGTCCTTATTACTGCAGTCCTTCTTCTCCTCTCTCTCCCCGTTT-AGCAGCAGGTATTACAATACTCCTAACAGACCGAAATCTCAACACATCAGACAGGGAGGCAGGAAGAGGAAGGGGGGAGAGGCCGGCCCGGGGAGCAGAGAAGCGGAAAGAGGCCCAGAAGCCACCGGAGCGGAAAAACACCGGAGCGCCAG-GAGGGGC---AAAAGGAGGGGACAAAAGGCACACCGGAAACCCCAAACACAGAGGGGGAAGGACAGGGCGCCGGGCGCAGCCGGGGGGGACCAGGGGCGGCCACGGGGCCGGGGGCGCAGCGGCCAAACGGGCCACCGCCGAAGAGCGGCAGGCAGGAGACCACAGGGCCGGGGAAAAGAGCACGCAGGACCCGGAAGGGAAACAGAGCACCGGGGGGGAGGAGAGAGGAGGAAACACGGCAGCAGGCCCAACCGCCGAGAACCACGGAACCGCGGAGCAAAGGAACACGAGAAGAGGGGACAAAGGGACCCGGAAAGGGGCACAGGGACCAAACAGGAGGGCAG T_catalanensis_SMF_100090 TTAAACGGCCGCGGTATCCTAACCGTGCAAAGGTAGCGAAATCATTTGTCCTCTAAATAAGGACCAGTATGAATGGCTAAATGAGGGCTAACCTGTCTCCTTTAACCTATCAGTGAAACTGATCTACCAGTACAAAAGCTGGTATAACCCCATAAGACGAGAAGACCCTGTGGAGCTTTAAATTAAAAGTCAACGGCAAC-----CTACCAA--CCCCC-CCCGTTA--TCTTGACCCTAAGTTTTTAGTTGGGGCGACTTCGGAACCAAACCAAACTTCCGAGC-AAACGACCTTAAATCTCAA-AAAGACCCACAAGTCTAAACCAAATGACCCAGTAAGACTGATAAACGAACCAAGTTACCCCAGGGATAACAGCGCAATCTTCTTCAAGAGTCCATATCGACAAGAAGGTTTACGACCTCGATGTTGGATCAGGACACCCAATTGGTGCAGCCGCTA-TAAAGGT------------------------CGGCCTTAAGCCTTTTAATCCGAGCAGAGCTAAGCCAGCCCGGCTCTCTTCTCGGCGACGATCAAATCTATAACGTTATTGTAACAGCCCACGCTTTTGTTATAATCTTCTTCATAGTTAT-ACCTGTCATAATTGGCGGATTTGGAAACTGATTAATCCCACTAATAATTGGGGCCCCAGATATGGCATTTCCACGAATAAACAACATAAGCTTTTGACTTCTCCCCCCTTCTTTTCTATTACTCTTAGCCTCCTCAGGGGTAGAAGCAGGAGCCGGGACAGGATGAACAGTCTACCCCCCCCTTGCAGGAAACCTAGCGCACGCCGGAGCCTCAGTCGACCTAACAATCTTTTCCCTACACTTAGCAGGTGTCTCCTCAATCTTAGGAGCAATTAATTTTATTACAACCTGCATTAATATAAAAACCACAGCAATAACCCAATACCAAACCCCACTATTTGTATGGTCCGTCCTTATTACTGCAGTCCTTCTTCTCCTCTCTCTCCCAGTTTTAGCAGCAGGTATTACAATACTCCTAACAGACCGAAATCTCAACACATCAGACAGGGAGGCAGGAAGAGGAAGGGGGGAGAGGCCGGCCCGGGGAGCAGAGAAGCGGAAAGAGGCCCAGAAGCCACCGGAGCGG-AAAACACCGGAGCGCCAG-GAGGGGC---AAAAGGAGGGGACAAAAGGCACACCGGAAACCCCAAACACAGAGGGGGAAGGACAGGGCGCCGGGCGCAGCCGGGGGGGACCAGGGGCGGCCACGGGGCCGGGGGCGCAGCGGCCAAACGGGCCACCGCCGAAGAGCGGCAGGCAGGAGACCACAGGGCCGGGGAAAAGAGCACGCAGGACCCGGAAGGGAAACAGAGCACCGGGGGGGAGGAGAGAGGAGGAAACACGGCAGCAGGCCCAACCGCCGAGAACCACGGAACCGCGGAGCAAAGGAACACGAGAAGAGGGGACAAAGGGACCCGGAAAGGGGCACAGGGACCAAACAGGAGGGCAG T_catalanensis_UFRGST_2890 TTAAACGGCCGCGGTATCCTAACCGTGCAAAGGTAGCGAAATCATTTGTCCTCTAAATAAGGACCAGTATGAATGGCTAAATGAGGGCTAACCTGTCTCCTTTAACCTATTAGTGAAACTGATCCACCAGTACAAAAGCTGGTATAACCCCATAAGACGAGAAGACCCTGTGGAGCTTTAAATTAAAAGTCAACGGCAAC-----CTACCAACCCCCCC-CCCGTTA--TCTTGACCCTAAA-TTTTAGTTGGGGCGACTTCGGAACCAAACCAAACTTCCGAGC-AAACGACCTTAAATCTCAA-AAAGACCCACAAGTCTAAACCAAATGACCCAGTAAGACTGATAAACGAACCAAGTTACCCCAGGGATAACAGCGCAATCTTCTTCAAGAGTCCATATCGACAAGAAGGTTTACGACCTCGATGTTGGATCAGGACACCCAATTGGTGCAGCCGCTATTAAAGGTTCGTTTGTTCAACGATTAATA?????GCCTTAAGCCTTTTAATCCGAGCAGAGCTAAGCCAGCCCGGCTCTCTTCTCGGCGACGATCAAATCTATAACGTTATTGTAACAGCCCACGCTTTTGTTATAATCTTCTTCATAGTTAT-ACCTGTCATAATTGGCGGATTTGGAAACTGATTAATCCCACTAATAATTGGGGCCCCAGATATGGCATTTCCACGAATAAACAACATAAGCTTTTGACTTCTTCCCCCTTCTTTTCTATTACTCTTAGCCTCCTCAGGAGTAGAAGCAGGAGCCGGGACAGGATGAACAGTCTACCCCCCCCTTGCAGGAAACCTAGCGCACGCCGGAGCCTCAGTCGACCTAACAATCTTTTCCCTACACTTAGCAGGTGTCTCCTCAATTTTAGGGGCAATTAATTTTATTACAACCTGCATTAATATAAAAACCACAGCAATAACCCAATACCAAACCCCACTATTTGTATGGTCCGTCCTTATTACTGCAGTCCTTCTTCTCCTCTCTCTCCCCGTTTTAGCAGCAGGTATTACAATACTCCTAACAGACCGAAATCTCAACACATCAGACAGGGAGGCAGGAAGAGGAAGGGGGGAGAGGCCGGCCCGGGGAGCAGAGAAGCGGAAAGAGGCCCAGAAGCCACCGGAGCGG-AAAACACCGGAGCGCCAG-GAGGGGC---AAAAGGAGGGGACAAAAGGCACACCGGAAACCCCAAACACAGAGGGGGAAGGACAGGGCGCCGGGCGCAGCCGGGGGGGACCAGGGGCGGCCACGGGGCCGGGGGCGCAGCGGCCAAACGGGCCACCGCCGAAGAGCGGCAGGCAGGAGACCACAGGGCCGGGGAAAAGAGCACGCAGGACCCGGAAGGGAAACAGAGCACCGGGGGGGAGGAGAGAGGAGGAAACACGGCAGCAGGCCCAACCGCCGAGAACCACGGAACCGCGGAGCAAAGGAACACGAGAAGAGGGGACAAAGGGACCCGGAAAGGGGCACAGGGACCAAACAGGAGGGCAG T_etheridgei_SMF_101595 TTTAACGGCCGCGGTATCCTAACCGTGCAAAGGTAGCGAAATCATTTGTCCTCTAAATAAGGACCAGTATGAATGGCTAAATGAGGGCTAACCTGTCTCCTTTAACCCATCAGTGAAACTGATCTACCAGTACAAAAGCTGGTATACCCACATAAGACGAGAAGACCCTGTGGAGCTTTAAATTAAAAGTCAACGGAAAC-----CCACCAG----ACC-CCCGTTA--TTTTGACCCTAAATTTTTAGTTGGGGCGACTTCGGAACTAAACTAAACTTCCGAGC-AAATGACCTTAAATCTCAA-AAAGACCAACAAGTCTAAACCAAATGACCCAGTAAAACTGATAAACGAACCAAGTTACCCCAGGGATAACAGCGCAATCTTCTTCAAGAGTCCATATCGACAAGAAGGTTTACGACCTCGATGTTGGATCAGGACACCCAATTGGTGCAGCCGCTATTAAAGGTTCGTTTGTTCAACGATTAATAGTCCT??????????TTTTAATCCGAGCAGAACTAAGCCAACCCGGATCTCTTCTCGGCGATGACCAAATCTATAACGTCATTGTAACAGCCCACGCTTTTGTTATGATCTTCTTCATAGTTAT-GCCTGTTATAATTGGAGGATTTGGAAACTGACTAGTACCCCTAATAATTGGAGCCCCAGACATAGCATTCCCACGAATAAACAACATAAGCTTTTGACTTCTTCCCCCCTCTTTTCTATTACTTTTAGCCTCCTCAGGAGTAGAGGCAGGAGCCGGAACAGGATGAACAGTCTACCCCCCCCTTGCAGGAAACCTGGCACACGCCGGAGCCTCAGTAGATCTAACAATCTTTTCCCTCCACCTGGCTGGTGTCTCCTCAATTTTAGGGGCAATTAATTTTATTACAACCTGCATTAATATAAAAACCACAGCAATAACCCAATACCAAACTCCCCTATTTGTATGATCCGTCCTTATTACTGCAGTTCTTCTTCTCCTGTCCCTCCCAGTTT-AGCAGCAGGAATTACAATGCTCCTAACAGATCGAAATCTTAATACATCAGACAGGGAGGCAGGAAGAGGAAGCGGGGAGAGGCCGGCCCGGGGAGCAGAGAAGCGGAAAGAGGCCCAGAAGCCACCGGAGCGG-AAAACACCGGAGAGCCAG-GAGGGGC---AAAAGGGGGGGACAAAACGCACACCGGAAACCCCAGACAAAGAGGGGGAAGGACAGGGCCCCGGGCGCAGCCGGGG?GGACCACGGGCGGCCACGGGGCCGGGGGCGCAGCGGCCAAACGGGCCACCGCCGAAGAGCGGCAGGCAGGAGACCACAGGGCCAGGGAAAAGAGCACGCAGGGCCCGAAAGGGAAACAGAGCGCCGGGGGGGAGGAGAGGGGAGGAAACACGGCAGCAGGCCCAACCGCCGAGAACCACGGAACCGCGGAGCAAAGGAACACGAGAGGAGGGGACAAAGGGAGCCGGACAGGGCCACAGGGAGCAAACAGGA-GGCAG T_etheridgei_SMF_101596 TTTAACGGCCGCGGTATCCTAACCGTGCAAAGGTAGCGAAATCATTTGTCCTCTAAATAAGGACCAGTATGAATGGCTAAATGAGGGCTAACCTGTCTCCTTTAACCCATCAGTGAAACTGATCTACCAGTACAAAAGCTGGTATACCCACATAAGACGAGAAGACCCTGTGGAGCTTTAAATTAAAAGTCAACGGAAAC-----CCACCAG----ACC-CCCGTTA--TTTTGACCCTAAATTTTTAGTTGGGGCGACTTCGGAACTAAACTAAACTTCCGAGC-AAATGACCTTAAATCTCAA-AAAGACCAACAAGTCTAAACCAAATGACCCAGTAAAACTGATAAACGAACCAAGTTACCCCAGGGATAACAGCGCAATCTTCTTCAAGAGTCCATATCGACAAGAAGGTTTACGACCTCGATGTTGGATCAGGACACCCAATTGGTGCAGCCGCTATTAAAGGTTCGTTTGTTCAACGATTAATAGTCCTGCCTTAAGCCTTTTAATCCGAGCAGAACTAAGCCAACCCGGCTCTCTTCTCGGCGATGACCAAATCTATAACGTCATTGTAACAGCCCACGCTTTTGTTATGATCTTCTTCATAGTTAT-GCCTGTTATAATTGGAGGATTTGGAAACTGACTAGTACCCCTAATAATTGGAGCCCCAGACATAGCATTCCCACGAATAAACAACATAAGCTTTTGACTTCTTCCCCCCTCTTTTCTATTACTTTTAGCCTCCTCAGGAGTAGAGGCAGGAGCCGGAACAGGATGAACAGTCTACCCCCCCCTTGCAGGAAACCTGGCACACGCCGGAGCCTCAGTAGACCTAACAATCTTTTCCCTCCACCTGGCTGGTGTCTCCTCAATTTTAGGGGCAATTAATTTTATTACAACCTGCATTAATATAAAAACCACAGCAATAACCCAATACCAAACTCCCCTATTTGTATGATCCGTCCTTATTACTGCAGTTCTTCTTCTCCTGTCCCTCCCAGTTTTAGCAGCAGGAATTACAATGCTCCTAACAGATCGAAATCTTAATACATCAGACAGGGAGGCAGGAAGAGGAAGCGGGGAGAGGCCGGCCCGGGGAGCAGAGAAGCGGAAAGAGGCCCAGAAGCCACCGGAGCGG-AAAACACCGGAGAGCCAG-GAGGGGC---AAAAGGGGGGGACAAAACGCACACCGGAAACCCCAGACAAAGAGGGGGAAGGACAGGGCCCCGGGCGCAGCCGGGGGGGACCACGGGCGGCCACGGGGCCGGGGGCGCAGCGGCCAAACGGGCCACCGCCGAAGAGCGGCAGGCAGGAGACCACAGGGCCAGGGAAAAGAGCACGCAGGGCCCGAAAGGGAAACAGAGCGCCGGGGGGGAGGAGAGGGGAGGAAACACGGCAGCAGGCCCAACCGCCGAGAACCACGGAACCGCGGAGCAAAGGAACACGAGAGGAGGGGACAAAGGGAGCCGGACAGGGCCACAGGGAGCAAACAGGAGGGCAG T_etheridgei_LG_1096 TTTAACGGCCGCGGTATCCTAACCGTGCAAAGGTAGCGAAATCATTTGTCCTCTAAATAAGGACCAGTATGAATGGCTAAATGAGGGCTAACCTGTCTCCTTTAACCCATCAGTGAAACTGATCTACCAGTACAAAAGCTGGTATACCCACATAAGACGAGAAGACCCTGTGGAGCTTTAAATTAAAAGTCAACGGAAAC-----CCACCAG----ACC-CCCGTTA--TTTTGACCCTAAATTTTTAGTTGGGGCGACTTCGGAACTAAACTAAACTTCCGAGC-AAATGACCTTAAATCTCAA-AAAGACCAACAAGTCTAAACCAAATGACCCAGTAAAACTGATAAACGAACCAAGTTACCCCAGGGATAACAGCGCAATCTTCTTCAAGAGTCCATATCGACAAGAAGGTTTACGACCTCGATGTTGGATCAGGACACCCAATTGGTGCAGCCGCTATTAAAGGTTCGTTTGTTCAACGATTAATAGTCCTGCCTTAAGCCTTTTAATCCGAGCAGAACTAAGCCAACCCGGCTCTCTTCTCGGCGATGACCAAATCTATAACGTCATTGTAACAGCCCACGCTTTTGTTATGATCTTCTTCATAGTTAT-GCCTGTTATAATCGGAGGATTTGGAAACTGACTAGTACCCCTAATAATTGGAGCCCCAGACATAGCATTCCCACGAATAAACAACATAAGCTTTTGACTTCTTCCCCCCTCTTTTCTATTACTTTTAGCCTCCTCAGGAGTAGAGGCAGGAGCCGGAACAGGATGAACAGTCTACCCCCCCCTTGCAGGAAACCTGGCACACGCCGGAGCCTCAGTAGACCTAACAATCTTTTCCCTCCACCTGGCTGGTGTCTCCTCAATTTTAGGGGCAATTAATTTTATTACAACCTGCATTAATATAAAAACCACAGCAATAACCCAATACCAAACTCCCCTATTTGTATGATCCGTCCTTATTACTGCAGTTCTTCTTCTCCTGTCCCTCCCAGTTTTAGCAGCAGGAATTACAATGCTCCTAACAGATCGAAATCTTAATACATCAGACAGGGAGGCAGGAAGAGGAAGCGGGGAGAGGCCGGCCCGGGGAGCAGAGAAGCGGAAAGAGGCCCAGAAGCCACCGGAGCGG-AAAACACCGGAGAGCCAG-GAGGGGC---AAAAGGGGGGGACAAAACGCACAC?GGAAACCCCAGACAAAGAGGGGGAAGGACAGGGCCCCGGGCGCAGCCGGGGGGGACCACGGGCGGCCACGGGGCCGGGGGCGCAGCGGCCAAACGGGCCACCGCCGAAGAGCGGCAGGCAGGAGACCACAGGGCCAGGGAAAAGAGCACGCAGGGCCCGAAAGGGAAACAGAGCGCCGGGGGGGAGGAGAGGGGAGGAAACACGGCAGCAGGCCCAACCGCCGAGAACCACGGAACCGCGGAGCAAAGGAACACGAGAGGAGGGGACAAAGGGAYCCGGACAGGGCCACAGGGAGCAAACAGGAGGGCAG T_guarani_SMF_100095 TTAAACGGCCGCGGTATCCTAACCGTGCAAAGGTAGCGTAATCACTTGTCCTCTAAATAAGGACTAGTATGAACGGCTAAATGAGGGGCCCCCTGTCTCCTTTAACCAATCAGTGAAACTGATCTTCCAGTACAAAAGCTGGAATGACCCTATAAGACGAGAAGACCCTGTGGAGCTTCAAATT-ATGGCCAACAATAATCATCACCACCAG--------------A--CCCTGGCCCATTAATTTCAGTTGGGGCGACTTCGGAAAACAGACAAACTTCCGAGC-AGATAGACCTTGATCTTAT-CTAGACCCACAAGTCTAAACTCACTGACCCAGTAACACTGACCAACGAACCAAGTTACCCCAGGGATAACAGCGCAATCTTCTTCAAGAGTCCCTATCGACAAGAAGGTTTACGACCTCGATGTTGGATCAGGACACCCAATTGGTGCAGCCGCTATTAAAGGTTCGTTTGTTCAACGATTAACAGTCCTGCCCTAAGTCTCCTAATTCGAGCGGAGTTGAGCCAACCAGGGGCCTTACTTGGCGACGATCAAATCTACAACGTAATTGTTACAGCACACGCCTTTGTCATAATCTTCTTCATGGTTAT-ACCGGTAATAATCGGAGGGTTTGGAAACTGATTAATCCCTCTAATAATCGGCGCCCCAGACATAGCATTTCCACGAATAAACAATATAAGTTTCTGACTTCTTCCTCCCTCCCTTCTTCTCCTCATTGCATCATCTGGGGTGGAAGCTGGGGCTGGAACAGGTTGAACAGTTTACCCACCCCTAGCAGGGAATCTAGCACATGCAGGCGCCTCTGTAGACCTTACAATTTTCTCCCTACATCTTGCAGGGGTATCATCCATCTTAGGGGCAATTAACTTCATCACCACCTGTATTAACATAAAAGCTGCAACAATAACCCAGTATCAAACCCCCCTATTTGTGTGATCCGTCTTAATTACAGCCGTGTTGCTTCTACTTTCCCTCCCAGTCCTAGCAGCAGGCATTACTATACTCCTAACCGACCGAAACCTAAACACCACAGACAGGGACGCAGGAAGAGGAAGGGGGGAGAGGCCGGCCCGGGGGGCAGAGAAGCGGAAAGAGGCCCCAAAGCCAGCCGAGCGGAAAAACACCGGAGAGCCAG-GAGGGGCCAAAGAAGGGGGGGGCAAAAGGCACACCAGAAACCCCAAAGACAGACGGGGGAAGACAGGGCCCCGGGCGGAGCAGGGGGGGGCCACGGGCAGCCACGGGGCCGGGGGCGCAGCGGCCAAACGGCCCACCGCCGAACGGCGGCAGGCAGGAGGCCACAGGGCCGGGGAAAAGAGCACGCAGGGCCAGGAAGGGAAACAGAGCACCGGGGGGGAGGAGGGGAGAAGAAACGCGGCAGCAGGCCCAACCGCCGAGAACCACGGACACGAGGAGCAAAGGAACACGAGAGGAGGGGACAACCGGACCCGGCAGGGGGCACAGGGACCAAACAGGAG-GCAA T_guarani_SMF_100096 TTAAACGGCCGCGGTATCCTAACCGTGCAAAGGTAGCGTAATCACTTGTCCTCTAAATAAGGACTAGTATGAACGGCTAAATGAGGGGCCCCCTGTCTCCTTTAACCAATCAGTGAAACTGATCTTCCAGTACAAAAGCTGGAATGACCCTATAAGACGAGAAGACCCTGTGGAGCTTCAAATT-ATGGCCAACAATAATCATCACCACCAG--------------A--CCCTGGCCCATTAATTTCAGTTGGGGCGACTTCGGAAAACAGACAAACTTCCGAGC-AGATAGACCTTGATCTTAT-CTAGACCCACAAGTCTAAACTCACTGACCCAGTAACACTGACCAACGAACCAAGTTACCCCAGGGATAACAGCGCAATCTTCTTCAAGAGTCCCTATCGACAAGAAGGTTTACGACCTCGATGTTGGATCAGGACACCCAATTGGTGCAGCCGCTATTAAAGGTTCGTTTGTTCAACGATTAACAGTCCTGCCCTAAGTCTCCTAATTCGAGCGGAG?TGAGCCAACCAGGGGCCTTACTTGGCGACGATCAAATCTACAACGTAATTGTTACAGCACACGCCTTTGTCATAATCTTCTTCATGGTTAT-ACCGGTAATAATCGGAGGGTTTGGAAACTGATTAATCCCTCTAATAATCGGCGCCCCAGACATAGCATTTCCACGAATAAACAATATAAGTTTCTGACTTCTTCCTCCCTCCCTTCTTCTCCTCATTGCATCATCTGGGGTGGAAGCTGGGGCTGGAACAGGTTGAACAGTTTACCCACCCCTAGCAGGGAATCTAGCACATGCAGGCGCCTCTGTAGACCTTACAATTTTCTCCCTACATCTTGCAGGGGTATCATCCATCTTAGGGGCAATTAACTTCATCACCACCTGTATTAACATAAAAGCTGCAACAATAACCCAGTATCAAACCCCCCTATTTGTGTGATCCGTCTTAATTACAGCCGTGTTGCTTCTACTTTCCCTCCCAGTCCTAGCAGCAGGCATTACTATACTCCTAACCGACCGAAACCTAAACACCACAGACAGGGACGCAGGAAGAGGAAGGGGGGAGAGGCCGGCCCGGGGGGCAGAGAAGCGGAAAGAGGCCCCAAAGCCAGCCGAGCGG-AAAACACCGGAGAGCCAG-GAGGGGCCAAAGAAGGGGGGGGCAAAAGGCACACCAGAAACCCCAAAGACAGACGGGGGAAGACAGGGCCCCGGGCGGAGCAGGGGGGGGCCACGGGCAGCCACGGGGCCGGGGGCGCAGCGGCCAAACGGCCCACCGCCGAACGGCGGCAGGCAGGACGCCACAGGGCCGGGGAAAAGAGCACGCAGGGCCAGGAAGGGAAACAGAGCACCGGGGGGGAGGAGGGGAGAAGAAACGCGGCAGCAGGCCCAACCGCCGAGAACCACGGACACGAGGAGCAAAGGAACACGAGAGGAGGGGACAACCGGACCCGGCAGGGGGCACAGGGACCAAACAGGAGGGCAA T_spinulosus_SMF_100094 TTAAACGGCCGCGGTATCCTAACCGTGCAAAGGTAGCGTAATCACTTGTCCTCTAAATAAGGACTAGTATGAACGGCTAAATGAGGGACCCCCTGTCTCCTTTAACCAATCAGTGAAACTGATCTTCCAGTACAAAAGCTGGAATGACCCTATAAGACGAGAAGACCCTGTGGAGCTTCAAATT-ATGGCCAACAATAATCATCACCACCAG--------------A--CCCTGGCCCATTAATTTCAGTTGGGGCGACTTCGGAAAACAGACAAACTTCCGAGC-AGATAGACCTTGATCTTAT-CTAGACCCACAAGTCTAAACTCACTGACCCAGTAACACTGACCAACGAACCAAGTTACCCCAGGGATAACAGCGCAATCTTCTTCAAGAGTCCCTATCGACAAGAAGGTTTACGACCTCGATGTTGGATCAGGACACCCGATTGGTGCAGCCGCTATTAAAGGTTCGTTTGTTCAACGATTAACAGTCCTGCCCTAAGTCTCCTAATTCGAGCGGAATTGAGCCAACCAGGGACCTTACTTGGCGACGATCAAATCTACAACGTAATTGTTACAGCACACGCCTTTGTCATAATCTTCTTCATGGTTAT-ACCGGTAATAATCGGGGGGTTTGGAAACTGATTAGTCCCTCTAATAATCGGCGCCCCAGACATAGCATTTCCACGAATAAACAATATAAGTTTCTGACTTCTTCCTCCCTCCCTTCTTCTCCTCATTGCATCATCTGGGGTAGAAGCTGGGGCTGGAACAGGTTGAACAGTTTACCCACCCCTAGCAGGGAATCTAGCACATGCAGGCGCCTCTGTAGACCTTACAATTTTCTCCCTACATCTTGCAGGGGTATCATCCATCTTAGGGGCAATTAACTTCATCACCACCTGTATTAACATAAAAGCTGCAACAATAACCCAGTATCAAACCCCCCTATTTGTGTGATCCGTCTTGATTACAGCCGTGTTGCTTCTACTTTCCCTCCCAGTCCTAGCAGCAGGCATTACTATACTCCTAACCGACCGAAACCTCAACACCACAGACAGGGACGCAGGAAGAGGAAGGGGGGAGAGGCCGGCCCGGGGGGCAGAGAAGCGGAAAGAGGCCCCAAAGCCAGCCGAGCGG-AAAACACCGGAGAGCCAG-GAGGGGCCAAAGAAGGGGGGGGCAAAAGGCACACCAGAAACCCCAAAGACAGACGGGGGAAGACAGGGCCCCGGGCGGAGCAGGGGGGGGCCACGGGCAGCCACGGGGCCGGGGGCGCAGCGGCCAAACGGCCCACCGCCGAACGGCGGCAGGCAGGACGCCACAGGGCCGGGGAAAAGAGCACGCAGGGCCAGGAAGGGAAACAGAGCACCGGGGGGGAGGAGGGGAGAAGAAACGCGGCAGCAGGCCCAACCGCCGAGAACCACGGACACGAGGAGCAAAGGAACACGAGAGGAGGGGACAACCGGACCCGGCAGGGGGCACAGGGACCAAACAGGA?GGCA? T_spinulosus_AMCC_204478 TTAAACGGCCGCGGTATCCTAACCGTGCAAAGGTAGCGTAATCACTTGTCCTCTAAATAAGGACTAGTATGAACGGCTAAATGAGGGACCCCCTGTCTCCTTTAACCAATCAGTGAAACTGATCTTCCAGTACAAAAGCTGGAATGACCCTATAAGACGAGAAGACCCTGTGGAGCTTCAAATT-ATGGCCAACAATAATCATCACCACCAG--------------A--CCCTGGCCCATTAATTTCAGTTGGGGCGACTTCGGAAAACAGACAAACTTCCGAGC-AGATAGACCTTGATCTTAT-CTAGACCCACAAGTCTAAACTCACTGACCCAGTAACACTGACCAACGAACCAAGTTACCCCAGGGATAACAGCGCAATCTTCTTCAAGAGTCCCTATCGACAAGAAGGTTTACGACCTCGATGTTGGATCAGGACACCCAATTGGTGCAGCCGCTATTAAAGGTTCGTTTGTTCAACGATTAACAGTCCTGCCCTAAGTCTCCTAATTCGAGCGGAATTGAGCCAACCAGGGGCCTTACTTGGCGACGATCAAATCTACAACGTAATTGTTACAGCACACGCCTTTGTCATAATCTTCTTCATGGTTAT-ACCGGTAATAATCGGGGGATTTGGAAACTGATTAGTCCCTCTAATAATCGGCGCCCCAGACATAGCATTTCCACGAATAAACAATATAAGTTTCTGACTTCTTCCTCCCTCCCTTCTTCTCCTCATTGCATCATCTGGGGTAGAAGCTGGGGCTGGAACAGGTTGAACAGTTTACCCACCCCTAGCAGGGAATCTAGCACATGCAGGCGCCTCTGTAGACCTTACAATTTTCTCCCTACATCTTGCAGGGGTATCATCCATCTTAGGGGCAATTAACTTCATCACCACCTGTATTAACATAAAAGCTGCAACAATAACCCAGTATCAAACCCCCCTATTTGTGTGATCCGTCTTGATTACAGCCGTGTTGCTTCTACTTTCCCTCCCAGTCCTAGCAGCAGGCATTACTATACTCCTAACCGACCGAAACCTCAACACCACAGACAGGGACGCAGGAAGAGGAAGGGGGGAGAGGCCGGCCCGGGGGGCAGAGAAGCGGAAAGAGGCCCCAAAGCCAGCCGAGCGG-AAAACACCGGAGAGCCAG-GAGGGGCCAAAGAAGGGGGGGGCAAAAGGCACACCAGAAACCCCAAAGACAGACGGGGGAAGACAGGGCCCCGGGCGGAGCAGGGGGGGGCCACGGGCAGCCACGGGGCCGGGGGCGCAGCGGCCAAACGGCCCACCGCCGAACGGCGGCAGGCAGGACGCCACAGGGCCGGGGAAAAGAGCACGCAGGGCCAGGAAGGGAAACAGAGCACCGGGGGGGAGGAGGGGAGAAGAAACGCGGCAGCAGGCCCAACCGCCGAGAACCACGGACACGAGGAGCAAAGGAACACGAGAGGAGGGGACAACCGGACCCGGCAGGGGGCACAGGGACCAAACAGGAGGGCAA T_spinulosus_PCS_312 TTAAACGGCCGCGGTATCCTAACCGTGCAAAGGTAGCGTAATCACTTGTCCTCTAAATAAGGACTAGTATGAACGGCTAAATGAGGGGCCCCCTGTCTCCTTTAACCAATCAGTGAAACTGATCTCCCAGTACAAAAGCTGGAATGACCCTATAAGACGAGAAGACCCTGTGGAGCTTCAAATT-ATGACCAACAATAGTCATCACCACCAG--------------A--CCCTGGCCCATTAATTTCAGTTGGGGCGACTTCGGAAAACAGACAAACTTCCGAGC-AGATAGACCTTGATCTTAT-CTAGACCCACAAGTCTAAACTCACTGACCCAGTAACACTGATCAACGAACCAAGTTACCCCAGGGATAACAGCGCAATCTTCTTCAAGAGTCCCTATCGACAAGAAGGTTTACGACCTCGATGTTGGATCAGGACACCCAATTGGTGCAGCCGCTATTAAAGGTTCGTTTGTTCAACGATTAACAGTCCT??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? T_spinulosus_IIBPH_3463 TTAAACGGCCGCGGTATCCTAACCGTGCAAAGGTAGCGTAATCACTTGTCCTCTAAATAAGGACTAGTATGAACGGCTAAATGAGGGGCCCCCTGTCTCCTTTAACCAATCAGTGAAACTGATCTTCCAGTACAAAAGCTGGAATGACCCCATAAGACGAGAAGACCCTGTGGAGCTTCAAATT-ATGGCCAACAATTATCATCACCACCAG--------------A--CCCTGGCCCATTAATTTCAGTTGGGGCGACTTCGGAAAACAGACAAACTTCCGAGC-AGATAGACCTTGATCTTAT-CTAGACCCACAAGTCTAAATCTACTGACCCAGTAACACTGATCAACGAACCAAGTTACCCCAGGGATAACAGCGCAATCTTCTTCAAGAGTCCCTATCGACAAGAAGGTTTACGACCTCGATGTTGGATCAGGACACCCAATTGGTGCAGCCGCTAGTAAAGGTTCGTTTGTTCAACGATTAACAGTCCTGCCCTAAGTCTCCTAATTCGAGCAGAATTGAGCCAACCAGGAGCCTTACTTGGCGACGATCAAATCTACAACGTAGTTGTTACAGCACACGCCTTTGTCATAATCTTCTTCATGGTTAT-ACCGGTGATAATCGGAGGGTTTGGAAACTGATTAGTCCCTCTAATAATCGGCGCCCCAGACATAGCATTTCCACGAATAAACAATATAAGTTTCTGACTTCTTCCTCCCTCCCTCCTTCTCCTCATTGCATCATCTGGGGTGGAAGCTGGGGCTGGAACAGGTTGAACAGTTTATCCTCCCCTAGCAGGAAATCTAGCACATGCAGGCGCCTCTGTAGAC-TTACAATTTTCTCCCTACATCTTGCAGGGGTATCATCCATCTTAGGGGCAATTAACTTCATCACCACCTGTATTAACATAAAAGCTGCAACAATAACCCAGTATCAAACCCCCCTATTTGTGTGATCCGTCTTGATTACAGCCGTGTTGCTTCTACTTTCCCTCCCAGTCCTAGCAGCAGGAATTACTATACTACTAACCGACCGAAACCTCAACACCACAGACAGGGACGCAGGAAGAGGAAGGGGGGAGAGGCCGGCCCGGGGGGCAGAGAAGCGGAAAGAGGCCCCAAAGCCAGCCGAGCGG-AAAACACCGGAGAGCCAG-GAGGGGCCAAAGAAGGGGGGGGCAAAAGGCACACCAGAAACCCCAAAGACAGACGGGGGAAGACAGGGCCCCGGGCGGAGCAGGGGGGGGCCACGGGCAGCCACGGGG-CGGGGGCGCAGCGGCCAAACGGCCCACCGCCGAACGGCGGCAGGCAGGACGCCACAGGGCCGGGGAAAAGAGCACGCAGGGCCAGGAAGGGAAACAGAGCACCGGGGGGGAGGAGGGGAGAAGAAACGCGGCAGCAGGCCCAACCGCCGAGAACCACGGACACGAGGAGCAAAGGAACACGAGAGGAGGGGACAACCGGACCCGGCAGGGGGCACAGGGACCAAACAGGAG-GCAA T_lagunablanca_SMF_103320 TTAAACGGCCGCGGTATCCTAACCGTGCAAAGGTAGCGTAATCACTTGTCCTCTAAATAGGGACTAGTATGAACGGCTAAATGAGGGGCCCCCTGTCTCCTTTAACCAATCAGTGAAACTGATCTCCCAGTACAAAAGCTGGGATAACCATATAAGACGAGAAGACCCTGTGGAGCTTCAAATT-ATGGCCAACAACAACCACCTCCACCA--------------CG--CCCTGGCCTATTAATTTCAGTTGGGGCGACTTCGGAAAACAGACAAACTTCCGAGC-AAGTAGACCTTAATCTTGC-CTAGACCCACAAGTCTAAATTCACTGACCCAGTAGCACTGATCAACGAACCAAGTTACCCCAGGGATAACAGCGCAATCTTCTTCAAGAGTCCCTATCGACAAGAAGGTTTACGACCTCGATGTTGGATCAGGACACCCAATTGGTGCAGCCGCTATWAAAGGTTCGTTTGTTCAACGATTAACAGTCCTGCCTAA--GCTCCTAATTCGAGCGGAATTAAGCCAGCCTGGGGCCCTACTTGGCGACGATCAAATCTATAACGTAATTGTTACAGCACACGCCTTTGTCATAATCTTCTTCATAGTTAT-ACCAGTAATAATCGGAGGGTTTGGAAACTGACTGGTGCCCCTAATAATTGGCGCCCCGGACATAGCATTTCCACGAATAAACAATATAAGTTTCTGACTTCTTCCTCCCTCCCTCCTTCTTCTCATTGCATCATCTGGGGTGGAAGCTGGGGCTGGGACAGGTTGAACAGTCTATCCGCCACTAGCAGGAAATCTAGCACATGCAGGCGCCTCTGTAGACCTTACAATTTTTTCCCTACATCTTGCAGGGGTATCATCCATCTTAGGGGCAATTAACTTTATCACCACCTGTATTAACATAAAAACTACAACAATAACCCAGTATCAAACCCCACTATTTGTGTGATCCGTCCTAATTACAGCCGTATTGCTTCTACTTTCCCTCCCAGTTT-AGCAGCAGGAATCACCATACTCCTAACCGACCGAAACCTTAACACCA?????????????????????????????????????????????????????AA?CGGAAAGAGGCCCC?AAGCCAGGCGAGCGG-AAAACACCGGAGAGCCAGCGAGGGGCGAAAGAAGGGGGGGGCAAAAGGCACACCAGAAACCCCAAAGACAGACGGGGGAAGACAGGGCCCCGGGCGGAGCAGGGGGGGGCCACGGGCAGCCACGGGGCCGGGGGCGCAGCGGCCAAACGGCCCACCGCCGAACGGCGGCAGGCAGGAGGGCACAGGGCCGGGGAAAAGAGCACGCAGGGCCAGGAAGGGAAACAGAGCACCGGGGGGGAGGAGGGGAGAAGAAACGCGGCAGCAGGCCCAACCGCCGAGAACCACGGACACGAGGAGCAAAGGAACACGAGAGGAGGGGACAACCGGACCCGGCAGGG-GCACAGGGACCAAACAGGAG-GCAA T_tarara_SMF_103313 ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????TGGGCCTTACTTGGCGACGATCAAATCTATAACGTAATTGTTACAGCACACGCCTTTGTCATAATCTTCTTCATAGTTAT-ACCAGTAATAATCGGAGGGTTTGGAAACTGACTGGTCCCCCTAATAATCGGCGCCCCGGACATAGCATTTCCACGAATGAACAATATAAGTTTCTGACTTCTTCCTCCCTCCCTCCTTCTTCTCATTGCATCATCTGGGGTGGAGGCTGGGGCTGGGACAGGTTGAACAGTCTATCCGCCACTAGCAGGAAATCTAGCACATGCAGGCGCCTCTGTAGACCTTACAATTTTTTCCCTACATCTTGCAGGGGTATCGTCCATCTTAGGGGCAATTAACTTTATCACCACTTGTATTAACATAAAAACTACAACAATAACCCAGTATCAGACCCCACTATTTGTGTGATCCGTCCTAATTACAGCCGTATTGCTTCTACTT-CCCTCCCAGTT???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? T_tarara_SMF_103314 TTAAACGGCCGCGGTATCCTAACCGTGCAAAGGTAGCGTAATCACTTGTCCTCTAAATAAGGACTAGTATGAACGGCTAAATGAGGGATCCCCTGTCTCCTTTAACCAATCAGTGAAACTGATCTCCCAGTACAAAAGCTGGGATAACCATATAAGACGAGAAGACCCTGTGGAGCTTCAAATT-ATGGCCAACAACAACTACCTCCACCA--------------CG--CCCTGGCCTATTAATTTCAGTTGGGGCGACTTCGGAAAACAAACAAACTTCCGAGC-AAGTAGACCTTAATCTTGC-CTAGACCCACAAGTCTAAATTCACTGACCCAGTAGCACTGATCAACGAACCAAGTTACCCCAGGGATAACAGCGCAATCTTCTTCAAGAGTCCCTATCGACAAGAAGGTTTACGACCTCGATGTTGGATCAGGACACCCAATTGGTGCAGCCGCTATTAAAGGTTCGTTTGTTCAACGATTAACAGTCCTGCCCTA-GCCTCCTAATTCGAGCGGAATTAAGCCAGCCTGGGGCCTTACTTGGCGACGATCAAATCTATAACGTAATTGTTACAGCACACGCCTTTGTCATAATCTTCTTCATAGTTAT-ACCAGTAATAATCGGAGGGTTTGGAAACTGACTGGTCCCCCTAATAATCGGCGCCCCGGACATAGCATTTCCACGAATGAACAATATAAGTTTCTGACTTCTTCCTCCCTCCCTCCTTCTTCTCATTGCATCATCTGGGGTGGAAGCTGGGGCTGGGACAGGTTGAACAGTCTATCCGCCACTAGCAGGAAATCTAGCACATGCAGGCGCCTCTGTAGACCTTACAATTTTTTCCCTACATCTTGCAGGGGTATCGTCCATCTTAGGGGCAATTAACTTTATCACCACCTGTATTAACATAAAAACTACAACAATAACCCAGTATCAAACCCCACTATTTGTGTGATCCGTCCTAATTACAGCCGTATTGCTTCTACTTTCCCTCCCAGTTTTAGCAGCAGGAATCACCATACTCCTAACCGACCGAAACCTTA-CACCACAGACAGGGACGCAGGAAGAGGAAGGGGGGAGAGGCCGGCCCGGGGGGCAGAGAAGCGGAAAGAGGCCCCAAAGCCAGCCGAGCGG-AAAACACCGGAGAGCCAG-GAGGGGCCAAAGAAGGGGGGGGCAAAAGGCACACCAGAAACCCCAAAGACAGACGGGGGAAGACAGGGCCCCGGGCGGAGCAGGGGGGGGCCACGGGCAGCCACGGGGCCGGGGGCGCAGCGGCCAAACGGCCCACCGCCGAACGGCGGCAGGCAGGACGCCACAGGGCCGGGGAAAAGAGCACGCAGGGCCAGGAAGGGAAACAGAGCACCGGGGGGGAGGAGGGGAGAAGAAACGCGGCAGCAGGCCCAACCGCCGAGAACCACGGACACGAGGAGCAAAGGAACACGAGAGGAGGGGACAACCGGACCCGGCAGGGGGCACAGGGACCAAACAGGAGGGCAA T_tarara_SMF_103315 TTAAACGGCCGCGGTATCCTAACCGTGCAAAGGTAGCGTAATCACTTGTCCTCTAAATAAGGACTAGTATGAACGGCTAAATGAGGGATCCCCTGTCTCCTTTAACCAATCAGTGAAACTGATCTCCCAGTACAAAAGCTGGGATAACCATATAAGACGAGAAGACCCTGTGGAGCTTCAAATT-ATGGCCAACAACAACTACCTCCACCA--------------CG--CCCTGGCCTATTAATTTCAGTTGGGGCGACTTCGGAAAACAAACAAACTTCCGAGC-AAGTAGACCTTAATCTTGC-CTAGACCCACAAGTCTAAATTCACTGACCCAGTAGCACTGATCAACGAACCAAGTTACCCCAGGGATAACAGCGCAATCTTCTTCAAGAGTCCCTATCGACAAGAAGGTTTACGACCTCGATGTTGGATCAGGACACCCAATTGGTGCAGCCGCT???????????????????????????????????GCCTAG---CTCCTAAT-CGAGCGGAATTAAGCCAGCCTGGGGCCTTACTTGGCGACGATCAAATCTATAACGTAATTGTTACAGCACACGCCTTTGTCATAATCTTCTTCATAGTTAT-ACCAGTAATAATCGGAGGGTT-GGAAACTGACTGGTCCCCCTAATAATCGGCGCCCCGGACATAGCATTTCCACGAATGAACAATATAAGTTTCTGACTTCTTCCTCCCTCCCTCCTTCTTCTCATTGCATCATCTGGGGTGGAAGCTGGGGCTGGGACAGGTTGAACAGTCTATCCGCCACTAGCAGGAAATCTAGCACATGCAGGCGCCTCTGTAGACCTTACAATTTTTTCCCTACATCTTGCAGGGGTATCGTCCATCTTAGGGGCAATTAACTTTATCACCACCTGTATTAACATAAAAACTACAACAATAACCCAGTATCAAACCCCACTATTTGTGTGATCCGTCCTAATTACAGCCGTATTGCTTCTACTT--CCTCCCAGTTTTAGCAGCAGGAATCACCATACTCCTAACCGACCGAAACCTTAACACCACAGACAGGGACGCAGGAAGAGGAAGGGGGGAGAGGCCGGCCCGGGGGGCAGAGAAGCGGAAAGAGGCCCCAAAGCCAGCCGAGCGG-AAAACACCGGAGAGCCAG-GAGGGGCCAAAGAAGGGGGGGGCAAAAGGCACACCAGAAACCCCAAAGACAGACGGGGGAAGACAGGGCCCCGGGCGGAGCAGGGGGGGGCCACGGGCAGCCACGGGGCCGGGGGCGCAGCGGCCAAACGGCCCACCGCCGAACGGCGGCAGGCAGGACGCCACAGGGCCGGGGAAAAGAGCACGCAGGGCCAGGAAGGGAAACAGAGCACCGGGGGGGAGGAGGGGAGAAGAAACGCGGCAGCAGGCCCAACCGCCGAGAACCACGGACACGAGGAGCAAAGGAACACGAGAGGAGGGGACAACCGGACCCGGCAGGGGGCACAGGGACCAAACAGGAGGGCAA T_tarara_SMF_103316 TTAAACGGCCGCGGTATCCTAACCGTGCAAAGGTAGCGTAATCACTTGTCCTCTAAATAAGGACTAGTATGAACGGCTAAATGAGGGATCCCCTGTCTCCTTTAACCAATCAGTGAAACTGATCTCCCAGTACAAAAGCTGGGATAACCATATAAGACGAGAAGACCCTGTGGAGCTTCAAATT-ATGGCCAACAACAACTACCTCCACCA--------------CG--CCCTGGCCT-TTAATTTCAGTTGGGGCGACTTCGGAAAACAAACAAACTTCCGAGC-AAGTAGACCTTAATCTTGC-CTAGACCCACAAGTCTAAATTCACTGACCCAGTAGCACTGATCAACGAACCAAGTTACCCCAGGGATAACAGCGCAATCTTCTTCAAGAGTCCCTATCGACAAGAAGGTTTACGACCTCGATGTTGGATCAGGACACCCAATTGGTGCAGCCGCTATTAAAGGTTCGTTTGTTCAACGATTAACAGTCCTGCCCTAAGCCTCCTAATTCGAGCGGAATTAAGCCAGCCTGGGGCCTTACTTGGCGACGATCAAATCTATAACGTAA?TGTTACAGCACACGCCTTTGTCATAATCTTCTTCATAGTTAT-ACCAGTAATAATCGGAGGGTTTGGAAACTGACTGGTCCCCCTAATAATCGGCGCCCCGGACATAGCATTTCCACGAATGAACAATATAAGTTTCTGACTTCTTCCTCCCTCCCTCCTTCTCCTCATTGCATCATCTGGGGTGGAAGCTGGGGCTGGGACAGGTTGAACAGTCTATCCGCCACTAGCAGGAAATCTAGCACATGCAGGCGCCTCTGTAGACCTTACAATTTTTTCCCTAC?TCTTGCAGGGGTATCGTCCATCTTAGGGGCAATTAACTTTATCACCACCTGTATTAACATAAAAACTACAACAATAACCCAGTATCAAACCCCACTATTTGTGTGATCCGTCCTAATTACAGCCGTATTGCTTCTACTT-CCCTCCCAGTTTTAGCAGCAGGAATCACCATACTCCTAACCGACCGAAACCTTAACACC?CAGACAGGGACGCAGGAAGAGGAAGGGGGGAGAGGCCGGCCCGGGGGGCAGAGAAGCGGAAAGAGGCCCCAAAGCCAGCCGAGCGG-AAAACACCGGAGAGCCAG-GAGGGGCCAAAGAAGGGGGGGGCAAAAGGCACACCAGAAACCCCAAAGACAGACGGGGGAAGACAGGGCCCCGGGCGGAGCAGGGGGGGGCCACGGGCAGCCACGGGGCCGGGGGCGCAGCGGCCAAACGGCCCACCGCCGAACGGCGGCAGGCAGGACGCCACAGGGCCGGGGAAAAGAGCACGCAGGGCCAGGAAGGGAAACAGAGCACCGGGGGGGAGGAGGGGAGAAGAAACGCGGCAGCAGGCCCAACCGCCGAGAACCACGGACACGAGGAGCAAAGGAACACGAGAGGAGGGGACAACCGGACCCGGCAGGGGGCACAGGGACCAAACAGGAGGGCAA T_teyumirim_AMNHFS_20281 TTAAACGGCCGCGGTATCCTAACCGTGCAAAGGTAGCGTAATCACTTGTCCCCTAAATAGGGACTAGTATGAACGGCTAAATGAGGGA-CCCCTGTCTCCTTTAACCAATCAGTGAAACTGATCTCCCAGTACAAAAGCTGGGATAACTATATAAGACGAGAAGACCCTGTGGAGCTTCAAATT-ATGGCCAACGACAACCATCTCCCCCAG--------------G--CCCTGGCCTATTAATTTCAGTTGGGGCGACTTCGGAAAACAGACAAACTTCCGAGC-AAATAGACCTTAATCTTGC-CTAGACCCACAAGTCTAAATTCACTGACCCAGTAGCACTGATCAACGAACCAAGTTA-CCCAGGGATAACAGCGCAATCTTCTTCAAGAGTCCCTATCGACAAGAAGGTTTACGACCTCGATGTTGGATCAGGACACCCAATTGGTGCAGCCGCTAT?AAG---TCGTT----------------GTCACGCCCTAAGCCTCCTAATTCGAGCGGAGCTAA-CCACCT-GGGGCCTTACTTGGCGATGATCAAATTTATAACGTAATTGTTACAGCACACGCCTTTGTCATAATCTTCTTCATAGTTAT-ACCAGTAATAATCGGAGGATTTGGAAACTGACTAGTCCCCCTAATAATCGGCGCCCCGGACATAGCATTTCCACGAATAAACAATATAAGTTTCTGACTTCTTCCTCCCTCCCTCCTTCTTCTCATTGCATCATCTGGGGTGGAAGCTGGGGCTGGGACAGGTTGAACAGTCTACCCTCCACTAGCAGGAAATCTAGCACATGCAGGCGCCTCTGTAGACCTTACAATTTTTTCCCTACATCTTGCAGGGGTATCATCCATCTTAGGGGCAATTAACTTTATCACCACCTGTATCAACATAAAAACTACAACAATAACCCAGTATCAAACCCCATTATTTGTATGGTCCGTCCTAATCACAGCCGTATTGCTTCTACTCTCCCTCCCAGTCCTAGCGGCAGGAATCACCATACTCCTAACCGACCGAAACCTTAACACCACAGACAGGGACGCAGGAAGAGGAAGGGGGGAGAGGCCGGCCCGGGGGGCAGAGAAGCGGAAAGAGGCCCCAAAGCCAGCCGAGCGG-AAAACACCGGAGAGCCAG-GAGGGGCCAAAGAAGGGGGGGGCAAAAGGCACACCAGAAACCCCAAAGACAGACGGGGGAAGACAGGGCCCCGGGCGGAGCAGGGGGGGGCCACGGGCAGCCACGG-GCCGGGGGCGCAGCGGCCAAACGGCCCACCGCCGAACGGCGGCAGGCAGGACGCCACAGGGCCGGGGAAAAGAGCACGCAGGGCCAGGAAGGGAAACAGAGCACCGGGGGGGAGGAGGGGAGAAGAAACGCGGCAGCAGGCCCAACCGCCGAGAACCACGGACACGAGGAGCAAAGGAACACGAGAGGAGGGGACAACCGGACCCGGCAGGGGGCACAGGGACCAAAC?????????? T_teyumirim_AMNHFS_20284 ????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GCCCTAAGC-TCCTAATTCGAGCGGAGCTAGTCCAGCC-TGGGCCTTACTTGGCGACGATCAAATTTATAACGTAATTGTTACAGCACACGCCTTTGTCATA-TCTTCTTCATAGTTATTACCAGTA--TATCGGAGGATT--GGAACTGACTAGTCCCCCTAATAATCGGCGCCCCGGACATAGCATTTCCACGAATAAACAATATAAGTTTCTGACTTCTTCCTCCCTCCCTCCTTCTTCTCATTGCATCATCTGGGGTGGAAGCTGGGGCTGGGACAGGTTGAACAGTCTATCCTCCACTAGCAGGAAATCTAGCACATGCAGGCGCCTCTGTAGACCTTACAATTTTTTCCCTACATCTTGCAGGAGTATCATCCATCTTAGGGGCAATTAACTTTATTACCACCTGTATTAACATAAAAACTACAACAATAACCCAGTATCAAACCCCATTATTTGTATGGTCCGTCCTAATTACAGCCGTATTGCTTCTACTCTCCCTCCCAGTCCTAGCGGCAGGAATCACCATACTCCTAACCGACCGAAACCTTAACACCACAGACAGGGACGCAGGAAGAGGAAGGGGGGAGAGGCCGGCCCGGGGGGCAGAGAAGCGGAAAGAGGCCCCAAAGCCAGCCGAGCGG-AAAACACCGGAGAGCCAG-GAGGGGCCAAAGAAGGGGGGGGCAAAAGGCACACCAGAAACCCCAAAGACAGACGGGGGAAGACAGGGCCCCGGGCGGAGCAGGGGGGGGCCACGGGCAGCCACAGGGCCGGGGGCGCAGCGGCCAAACGGCCCACCGCCGAACGGCGGCAGGCAGGACGCCACAGGGCCGGGGAAAAGAGCACGCAGGGCCAGGAAGGGAAACAGAGCACCGGGGGGGAGGAGGGGAGAAGAAACGCGGCAGCAGGCCCAACCGCCGAGAACCACGGACACGAGGAGCAAAGGAACACGAGAGGAGGGGACAACCGGACCCGGCAGGGGGCACAGGGACCAAACAGGAGGGCAA ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 1507; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 1507; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 1507; END; BEGIN TREES; Title 'ConMT_BI_Tree'; ID 0160eac4f75918; LINK Taxa = 'Tropidurus_Concatenated_mt'; TRANSLATE [0] 1 Plica_plica_AMCC_106953, [1] 2 T_catalanensis_SMF_100093, [2] 3 T_catalanensis_SMF_100090, [3] 4 T_catalanensis_UFRGST_2890, [4] 5 T_etheridgei_SMF_101595, [5] 6 T_etheridgei_SMF_101596, [6] 7 T_etheridgei_LG_1096, [7] 8 T_guarani_SMF_100095, [8] 9 T_guarani_SMF_100096, [9] 10 T_spinulosus_SMF_100094, [10] 11 T_spinulosus_AMCC_204478, [11] 12 T_spinulosus_PCS_312, [12] 13 T_spinulosus_IIBPH_3463, [13] 14 T_lagunablanca_SMF_103320, [14] 15 T_tarara_SMF_103313, [15] 16 T_tarara_SMF_103314, [16] 17 T_tarara_SMF_103315, [17] 18 T_tarara_SMF_103316, [18] 19 T_teyumirim_AMNHFS_20281, [19] 20 T_teyumirim_AMNHFS_20284; TREE con_50_majrule = (1:0.164072,(((2:0.000765,3:0.004494):0.003471,4:0.004341):0.032707,(5:0.002793,6:0.000728,7:0.001685):0.038217):0.163521,((((8:0.000709,9:0.000711):0.004674,(10:0.002768,11:0.001677):0.003968):0.005405,12:0.00956,13:0.013374):0.040024,((14:0.007937,(15:0.009392,16:0.000714,17:0.002869,18:0.001704):0.006721):0.006799,(19:0.01078,20:0.012523):0.018521):0.016088):0.185726); END; BEGIN TREES; Title 'ConMT_ML_Tree'; ID 0160eac532b120; LINK Taxa = 'Tropidurus_Concatenated_mt'; TRANSLATE [0] 1 Plica_plica_AMCC_106953, [1] 2 T_catalanensis_SMF_100093, [2] 3 T_catalanensis_SMF_100090, [3] 4 T_catalanensis_UFRGST_2890, [4] 5 T_etheridgei_SMF_101595, [5] 6 T_etheridgei_SMF_101596, [6] 7 T_etheridgei_LG_1096, [7] 8 T_guarani_SMF_100095, [8] 9 T_guarani_SMF_100096, [9] 10 T_spinulosus_SMF_100094, [10] 11 T_spinulosus_AMCC_204478, [11] 12 T_spinulosus_PCS_312, [12] 13 T_spinulosus_IIBPH_3463, [13] 14 T_lagunablanca_SMF_103320, [14] 15 T_tarara_SMF_103313, [15] 16 T_tarara_SMF_103314, [16] 17 T_tarara_SMF_103315, [17] 18 T_tarara_SMF_103316, [18] 19 T_teyumirim_AMNHFS_20281, [19] 20 T_teyumirim_AMNHFS_20284; TREE tree_1 = (1:0.118221,(((2:0.000002,3:0.004033):0.00271,4:0.002235):0.035181,(5:0.001996,(6:0.000002,7:0.000979):0.000002):0.025778):0.126797,(((((8:0.000002,9:0.000002):0.003823,(10:0.001967,11:0.000973):0.0031):0.005255,13:0.012294):0.002286,12:0.007995):0.029058,((14:0.007456,((16:0.000002,18:0.000983):0.000002,(17:0.003027,15:0.006632):0.000001):0.005613):0.005592,(19:0.009114,20:0.009183):0.016318):0.015551):0.140346); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1515767375260; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 1501957057693141688; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 7640983785767992922; mqVersion 320; checksumv 0 3 3702759110 null getNumChars 1507 numChars 1507 getNumTaxa 20 numTaxa 20 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 460711.0 sumSquares -4.6116860184272384E18 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 220; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1060 727; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #1501957057693141688 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 0160eac4f75918; toggleUseWeights off; endTell; setAssignedID 3185.1515767268051.1927530234190064929; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 840 655; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; makeTreeWindow #1501957057693141688 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 2; setTreeBlockID 0160eac532b120; toggleUseWeights off; endTell; setAssignedID 3215.1515767283683.7077786085633678006; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 840 655; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #7640983785767992922 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 840 655; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;