#NEXUS [written Fri Jan 12 14:28:01 CET 2018 by Mesquite version 3.2 (build 801) at HG17209/172.30.18.79] BEGIN TAXA; TITLE 'Tropidurus_16S'; DIMENSIONS NTAX=17; TAXLABELS Plica_plica_AMCC_106953 T_catalanensis_SMF_100093 T_catalanensis_SMF_100090 T_catalanensis_UFRGST_2890 T_etheridgei_SMF_101595 T_etheridgei_SMF_101596 T_etheridgei_LG_1096 T_guarani_SMF_100095 T_guarani_SMF_100096 T_lagunablanca_SMF_103320 T_spinulosus_AMCC_204478 T_spinulosus_SMF_100094 T_spinulosus_IIBPH_3463 T_tarara_SMF_103314 T_tarara_SMF_103315 T_tarara_SMF_103316 T_teyumirim_AMNHFS_20281 ; END; BEGIN CHARACTERS; TITLE '16S_Matrix'; DIMENSIONS NCHAR=536; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Plica_plica_AMCC_106953 ?????????????????????????????????TTCAACGGCCGCGGTATCCTAACCGTGCAAAGGTAGCGTAA?CATTTGTCCTCTAAATAAGGACCAGTATGAATGGCTAAATGCGGACCAATCTGTCTCCTTTAACCAACCAGTGAAACTGATCTACCAGTACAAAAGCTGGTATAGCAATATAAGACGAGAAGACCCTGTGGAGCTTAAAATTATAA-TCA-----------------CACCAACC--TCTAATCATTA---AGCC-TTGACCTATAATTTTCAGTTGGGGCGACTTTGGAACTAAGCCAAACTTCCAAGCAAAATAGACCTAAATCTTAACCAAGACCAACAAGTCT-AACAAAATGACCCAGTAAAACTGATCAACGAACCAAGTTACCCCAGGGATAACAG?GCAATCTTCTTCAAGAGTCCATATCGACAAGAAGGTTTACGACCTCGATGTTGGATCAGGACACCCAATTGGTGCAGCCGCTATTAAA????????????????????????????? T_catalanensis_SMF_100093 AAGTATTAAAGGTAACGCCTGCCCAGTGAAACTTTAAACGGCCGCGGTATCCTAACCGTGCAAAGGTAGCGAAATCATTTGTCCTCTAAATAAGGACCAGTATGAATGGCTAAATGAGGGCTAACCTGTCTCCTTTAACCTATCAGTGAAACTGATCTACCAGTACAAAAGCTGGTATAACCCCATAAGACGAGAAGACCCTGTGGAGCTTTAAATTAAAAGTCAACGG-CAAC-------CTACCAACC--CCC-CCCGTTA-----TC-TTGACCCTAAGTTTTTAGTTGGGGCGACTTCGGAACCAAACCAAACTTCCGAGC-AAACGACCTTAAATCTCAA-AAAGACCCACAAGTCTAAACCAAATGACCCAGTAAGACTGATAAACGAACCAAGTTACCCCAGGGATAACAGCGCAATCTTCTTCAAGAGTCCATATCGACAAGAAGGTTTACGACCTCGATGTTGGATCAGGACACCCAATTGGTGCAGCCGCTATTAAAGGTTCGTTTGTTCAACGATTAATAGTCCT T_catalanensis_SMF_100090 ??????????GGT-ACGCCTG-CCAGTG-AACTTTAAACGGCCGCGGTATCCTAACCGTGCAAAGGTAGCGAAATCATTTGTCCTCTAAATAAGGACCAGTATGAATGGCTAAATGAGGGCTAACCTGTCTCCTTTAACCTATCAGTGAAACTGATCTACCAGTACAAAAGCTGGTATAACCCCATAAGACGAGAAGACCCTGTGGAGCTTTAAATTAAAAGTCAACGG-CAAC-------CTACCAACC--CCC-CCCGTTA-----TC-TTGACCCTAAGTTTTTAGTTGGGGCGACTTCGGAACCAAACCAAACTTCCGAGC-AAACGACCTTAAATCTCAA-AAAGACCCACAAGTCTAAACCAAATGACCCAGTAAGACTGATAAACGAACCAAGTTACCCCAGGGATAACAGCGCAATCTTCTTCAAGAGTCCATATCGACAAGAAGGTTTACGACCTCGATGTTGGATCAGGACACCCAATTGGTGCAGCCGCTA-TAAAGGTCG???????????????????????? T_catalanensis_UFRGST_2890 ????????????????????????????????TTTAAACGGCCGCGGTATCCTAACCGTGCAAAGGTAGCGAAATCATTTGTCCTCTAAATAAGGACCAGTATGAATGGCTAAATGAGGGCTAACCTGTCTCCTTTAACCTATTAGTGAAACTGATCCACCAGTACAAAAGCTGGTATAACCCCATAAGACGAGAAGACCCTGTGGAGCTTTAAATTAAAAGTCAACGG-CAAC-------CTACCAACCCCCCC-CCCGTTA-----TC-TTGACCCTAAA-TTTTAGTTGGGGCGACTTCGGAACCAAACCAAACTTCCGAGC-AAACGACCTTAAATCTCAA-AAAGACCCACAAGTCTAAACCAAATGACCCAGTAAGACTGATAAACGAACCAAGTTACCCCAGGGATAACAGCGCAATCTTCTTCAAGAGTCCATATCGACAAGAAGGTTTACGACCTCGATGTTGGATCAGGACACCCAATTGGTGCAGCCGCTATTAAAGGTTCGTTTGTTCAACGATTAATA????? T_etheridgei_SMF_101595 AAGTATTAAAGGTAACGCCTGCCCAGTGAAACTTTTAACGGCCGCGGTATCCTAACCGTGCAAAGGTAGCGAAATCATTTGTCCTCTAAATAAGGACCAGTATGAATGGCTAAATGAGGGCTAACCTGTCTCCTTTAACCCATCAGTGAAACTGATCTACCAGTACAAAAGCTGGTATACCCACATAAGACGAGAAGACCCTGTGGAGCTTTAAATTAAAAGTCAACGG-AAAC-------CCACCAG----ACC-CCCGTTA-----TT-TTGACCCTAAATTTTTAGTTGGGGCGACTTCGGAACTAAACTAAACTTCCGAGC-AAATGACCTTAAATCTCAA-AAAGACCAACAAGTCTAAACCAAATGACCCAGTAAAACTGATAAACGAACCAAGTTACCCCAGGGATAACAGCGCAATCTTCTTCAAGAGTCCATATCGACAAGAAGGTTTACGACCTCGATGTTGGATCAGGACACCCAATTGGTGCAGCCGCTATTAAAGGTTCGTTTGTTCAACGATTAATAGTCCT T_etheridgei_SMF_101596 AAGTATTAAAGGTAACGCCTGCCCAGTGAAACTTTTAACGGCCGCGGTATCCTAACCGTGCAAAGGTAGCGAAATCATTTGTCCTCTAAATAAGGACCAGTATGAATGGCTAAATGAGGGCTAACCTGTCTCCTTTAACCCATCAGTGAAACTGATCTACCAGTACAAAAGCTGGTATACCCACATAAGACGAGAAGACCCTGTGGAGCTTTAAATTAAAAGTCAACGG-AAAC-------CCACCAG----ACC-CCCGTTA-----TT-TTGACCCTAAATTTTTAGTTGGGGCGACTTCGGAACTAAACTAAACTTCCGAGC-AAATGACCTTAAATCTCAA-AAAGACCAACAAGTCTAAACCAAATGACCCAGTAAAACTGATAAACGAACCAAGTTACCCCAGGGATAACAGCGCAATCTTCTTCAAGAGTC-ATATCGACAAGAAGGTTTACGACCTCGATGTTGGATCAGGACACCCAATTGGTGCAGCCGCTATTAAAGGTTCGTTTGTTCAACGATTAATAGTCCT T_etheridgei_LG_1096 AAGTATTAAAGGTAACGCCTGCCCAGTGAAACTTTTAACGGCCGCGGTATCCTAACCGTGCAAAGGTAGCGAAATCATTTGTCCTCTAAATAAGGACCAGTATGAATGGCTAAATGAGGGCTAACCTGTCTCCTTTAACCCATCAGTGAAACTGATCTACCAGTACAAAAGCTGGTATACCCACATAAGACGAGAAGACCCTGTGGAGCTTTAAATTAAAAGTCAACGG-AAAC-------CCACCAG----ACC-CCCGTTA-----TT-TTGACCCTAAATTTTTAGTTGGGGCGACTTCGGAACTAAACTAAACTTCCGAGC-AAATGACCTTAAATCTCAA-AAAGACCAACAAGTCTAAACCAAATGACCCAGTAAAACTGATAAACGAACCAAGTTACCCCAGGGATAACAGCGCAATCTTCTTCAAGAGTCCATATCGACAAGAAGGTTTACGACCTCGATGTTGGATCAGGACACCCAATTGGTGCAGCCGCTATTAAAGGTTCGTTTGTTCAACGATTAATAGTCCT T_guarani_SMF_100095 TAGTATTAAAGGTAACGCCTGCCCAGTGAAAC-TTAAACGGCCGCGGTATCCTAACCGTGCAAAGGTAGCGTAATCACTTGTCCTCTAAATAAGGACTAGTATGAACGGCTAAATGAGGGGCCCCCTGTCTCCTTTAACCAATCAGTGAAACTGATCTTCCAGTACAAAAGCTGGAATGACCCTATAAGACGAGAAGACCCTGTGGAGCTTCAAATT-ATGGCCAACAA-TAATCATC--ACCACCAG----ACC----------------CTGGCCCATTAATTTCAGTTGGGGCGACTTCGGAAAACAGACAAACTTCCGAGC-AGATAGACCTTGATCTTAT-CTAGACCCACAAGTCTAAACTCACTGACCCAGTAACACTGACCAACGAACCAAGTTACCCCAGGGATAACAGCGCAATCTTCTTCAAGAGTCCCTATCGACAAGAAGGTTTACGACCTCGATGTTGGATCAGGACACCCAATTGGTGCAGCCGCTATTAAAGGTTCGTTTGTTCAACGATTAACAGTCCT T_guarani_SMF_100096 TAGTATTAAAGGTAACGCCTGCCCAGTGAAAC-TTAAACGGCCGCGGTATCCTAACCGTGCAAAGGTAGCGTAATCACTTGTCCTCTAAATAAGGACTAGTATGAACGGCTAAATGAGGGGCCCCCTGTCTCCTTTAACCAATCAGTGAAACTGATCTTCCAGTACAAAAGCTGGAATGACCCTATAAGACGAGAAGACCCTGTGGAGCTTCAAATT-ATGGCCAACAA-TAATCATC--ACCACCAG----ACC----------------CTGGCCCATTAATTTCAGTTGGGGCGACTTCGGAAAACAGACAAACTTCCGAGC-AGATAGACCTTGATCTTAT-CTAGACCCACAAGTCTAAACTCACTGACCCAGTAACACTGACCAACGAACCAAGTTACCCCAGGGATAACAGCGCAATCTTCTTCAAGAGTCCCTATCGACAAGAAGGTTTACGACCTCGATGTTGGATCAGGACACCCAATTGGTGCAGCCGCTATTAAAGGTTCGTTTGTTCAACGATTAACAGTCCT T_lagunablanca_SMF_103320 TAGTATTAAAGGTAACGCCTGCCCAGTGAGAC-TTAAACGGCCGCGGTATCCTAACCGTGCAAAGGTAGCGTAATCACTTGTCCTCTAAATAGGGACTAGTATGAACGGCTAAATGAGGGGCCCCCTGTCTCCTTTAACCAATCAGTGAAACTGATCTCCCAGTACAAAAGCTGGGATAACCATATAAGACGAGAAGACCCTGTGGAGCTTCAAATT-ATGGCCAACAA-CAACCA--CCT-CCACC--------------AC-----GCCCTGGCCTATTAATTTCAGTTGGGGCGACTTCGGAAAACAGACAAACTTCCGAGC-AAGTAGACCTTAATCTTGC-CTAGACCCACAAGTCTAAATTCACTGACCCAGTAGCACTGATCAACGAACCAAGTTACCCCAGGGATAACAGCGCAATCTTCTTCAAGAGTCCCTATCGACAAGAAGGTTTACGACCTCGATGTTGGATCAGGACACCCAATTGGTGCAGCCGCTATWAAAGGTTCGTTTGTTCAACGATTAACAGTCCT T_spinulosus_AMCC_204478 TAGTATTAAAGGTAACGCCTGCCCAGTGAGAC-TTAAACGGCCGCGGTATCCTAACCGTGCAAAGGTAGCGTAATCACTTGTCCTCTAAATAAGGACTAGTATGAACGGCTAAATGAGGGACCCCCTGTCTCCTTTAACCAATCAGTGAAACTGATCTTCCAGTACAAAAGCTGGAATGACCCTATAAGACGAGAAGACCCTGTGGAGCTTCAAATT-ATGGCCAACAATAATC----ATCACCACC--------------AGACC---C-TGGCCCATTAA-TTTCAGTTGGGGCGACTTCGGAAAACAGACAAACTTCCGAGC-AGATAGACCTTGATCTTAT-CTAGACCCACAAGTCTAAACTCACTGACCCAGTAACACTGACCAACGAACCAAGTTACCCCAGGGATAACAGCGCAATCTTCTTCAAGAGTCCCTATCGACAAGAAGGTTTACGACCTCGATGTTGGATCAGGACACCCAATTGGTGCAGCCGCTATTAAAGGTTCGTTTGTTCAACGATTAACAGTCCT T_spinulosus_SMF_100094 TAGTATTAAAGGTAACGCCTGCCCAGTGAGAC-TTAAACGGCCGCGGTATCCTAACCGTGCAAAGGTAGCGTAATCACTTGTCCTCTAAATAAGGACTAGTATGAACGGCTAAATGAGGGACCCCCTGTCTCCTTTAACCAATCAGTGAAACTGATCTTCCAGTACAAAAGCTGGAATGACCCTATAAGACGAGAAGACCCTGTGGAGCTTCAAATT-ATGGCCAACAATAATC----ATCACCACC--------------AGACC---C-TGGCCCATTAA-TTTCAGTTGGGGCGACTTCGGAAAACAGACAAACTTCCGAGC-AGATAGACCTTGATCTTAT-CTAGACCCACAAGTCTAAACTCACTGACCCAGTAACACTGACCAACGAACCAAGTTACCCCAGGGATAACAGCGCAATCTTCTTCAAGAGTCCCTATCGACAAGAAGGTTTACGACCTCGATGTTGGATCAGGACACCCGATTGGTGCAGCCGCTATTAAAGGTTCGTTTGTTCAACGATTAACAGTCCT T_spinulosus_IIBPH_3463 TAGTATTAAAGGTAACGCCTGCCCAGTGAGAC-TTAAACGGCCGCGGTATCCTAACCGTGCAAAGGTAGCGTAATCACTTGTCCTCTAAATAAGGACTAGTATGAACGGCTAAATGAGGGGCCCCCTGTCTCCTTTAACCAATCAGTGAAACTGATCTTCCAGTACAAAAGCTGGAATGACCCCATAAGACGAGAAGACCCTGTGGAGCTTCAAATT-ATGGCCAACAATTATC----ATCACCACC--------------AGACC---C-TGGCCCATTAA-TTTCAGTTGGGGCGACTTCGGAAAACAGACAAACTTCCGAGC-AGATAGACCTTGATCTTAT-CTAGACCCACAAGTCTAAATCTACTGACCCAGTAACACTGATCAACGAACCAAGTTACCCCAGGGATAACAGCGCAATCTTCTTCAAGAGTCCCTATCGACAAGAAGGTTTACGACCTCGATGTTGGATCAGGACACCCAATTGGTGCAGCCGCTAGTAAAGGTTCGTTTGTTCAACGATTAACAGTCCT T_tarara_SMF_103314 TAGTATTAAAGGTAACGCCTGCCCAGTGAGAC-TTAAACGGCCGCGGTATCCTAACCGTGCAAAGGTAGCGTAATCACTTGTCCTCTAAATAAGGACTAGTATGAACGGCTAAATGAGGGATCCCCTGTCTCCTTTAACCAATCAGTGAAACTGATCTCCCAGTACAAAAGCTGGGATAACCATATAAGACGAGAAGACCCTGTGGAGCTTCAAATT-ATGGCCAACAACAACT----ACCTCCACC--------------ACGCC---C-TGGCCTATTAA-TTTCAGTTGGGGCGACTTCGGAAAACAAACAAACTTCCGAGC-AAGTAGACCTTAATCTTGC-CTAGACCCACAAGTCTAAATTCACTGACCCAGTAGCACTGATCAACGAACCAAGTTACCCCAGGGATAACAGCGCAATCTTCTTCAAGAGTCCCTATCGACAAGAAGGTTTACGACCTCGATGTTGGATCAGGACACCCAATTGGTGCAGCCGCTATTAAAGGTTCGTTTGTTCAACGATTAACAGTCCT T_tarara_SMF_103315 ?????????????????????????????????TTAAACGGCCGCGGTATCCTAACCGTGCAAAGGTAGCGTAATCACTTGTCCTCTAAATAAGGACTAGTATGAACGGCTAAATGAGGGATCCCCTGTCTCCTTTAACCAATCAGTGAAACTGATCTCCCAGTACAAAAGCTGGGATAACCATATAAGACGAGAAGACCCTGTGGAGCTTCAAATT-ATGGCCAACAACAACT----ACCTCCACC--------------ACGCC---C-TGGCCTATTAA-TTTCAGTTGGGGCGACTTCGGAAAACAAACAAACTTCCGAGC-AAGTAGACCTTAATCTTGC-CTAGACCCACAAGTCTAAATTCACTGACCCAGTAGCACTGATCAACGAACCAAGTTACCCCAGGGATAACAGCGCAATCTTCTTCAAGAGTCCCTATCGACAAGAAGGTTTACGACCTCGATGTTGGATCAGGACACCCAATTGGTGCAGCCGCT??????????????????????????????????? T_tarara_SMF_103316 TAGTATTAAAGGTAACGCCTGCCCAGTGAGAC-TTAAACGGCCGCGGTATCCTAACCGTGCAAAGGTAGCGTAATCACTTGTCCTCTAAATAAGGACTAGTATGAACGGCTAAATGAGGGATCCCCTGTCTCCTTTAACCAATCAGTGAAACTGATCTCCCAGTACAAAAGCTGGGATAACCATATAAGACGAGAAGACCCTGTGGAGCTTCAAATT-ATGGCCAACAACAACT----ACCTCCACC--------------ACGCC---C-TGGCCT-TTAA-TTTCAGTTGGGGCGACTTCGGAAAACAAACAAACTTCCGAGC-AAGTAGACCTTAATCTTGC-CTAGACCCACAAGTCTAAATTCACTGACCCAGTAGCACTGATCAACGAACCAAGTTACCCCAGGGATAACAGCGCAATCTTCTTCAAGAGTCCCTATCGACAAGAAGGTTTACGACCTCGATGTTGGATCAGGACACCCAATTGGTGCAGCCGCTATTAAAGGTTCGTTTGTTCAACGATTAACAGTCCT T_teyumirim_AMNHFS_20281 ?????????AAGTAACGCCTGCCCAGTGAGAC-TTAAACGGCCGCGGTATCCTAACCGTGCAAAGGTAGCGTAATCACTTGTCCCCTAAATAGGGACTAGTATGAACGGCTAAATGAGGGA-CCCCTGTCTCCTTTAACCAATCAGTGAAACTGATCTCCCAGTACAAAAGCTGGGATAACTATATAAGACGAGAAGACCCTGTGGAGCTTCAAATT-ATGGCCAACGACAACC----ATCTCCCCC--------------AGGCC---C-TGGCCTATTAA-TTTCAGTTGGGGCGACTTCGGAAAACAGACAAACTTCCGAGC-AAATAGACCTTAATCTTGC-CTAGACCCACAAGTCTAAATTCACTGACCCAGTAGCACTGATCAACGAACCAAGTTA-CCCAGGGATAACAGCGCAATCTTCTTCAAGAGTCCCTATCGACAAGAAGGTTTACGACCTCGATGTTGGATCAGGACACCCAATTGGTGCAGCCGCTATTAAAGGTTCGTTTGTTCA-CGATTAACAGTCCT ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 536; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 536; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 536; END; BEGIN TREES; Title '16S_BI_Tree'; ID 0160ea8c12ae5; LINK Taxa = 'Tropidurus_16S'; TRANSLATE [0] 1 Plica_plica_AMCC_106953, [1] 2 T_catalanensis_SMF_100093, [2] 3 T_catalanensis_SMF_100090, [3] 4 T_catalanensis_UFRGST_2890, [4] 5 T_etheridgei_SMF_101595, [5] 6 T_etheridgei_SMF_101596, [6] 7 T_etheridgei_LG_1096, [7] 8 T_guarani_SMF_100095, [8] 9 T_guarani_SMF_100096, [9] 10 T_lagunablanca_SMF_103320, [10] 11 T_spinulosus_AMCC_204478, [11] 12 T_spinulosus_SMF_100094, [12] 13 T_spinulosus_IIBPH_3463, [13] 14 T_tarara_SMF_103314, [14] 15 T_tarara_SMF_103315, [15] 16 T_tarara_SMF_103316, [16] 17 T_teyumirim_AMNHFS_20281; TREE con_50_majrule = (1:0.049303,(((8:0.001549,9:0.00157):0.004005,(11:0.001559,12:0.003684):0.003178,13:0.016503):0.033581,(10:0.003103,(14:0.001488,15:0.001683,16:0.001531):0.009408,17:0.02526):0.020477):0.152493,(((2:0.001543,3:0.003688):0.003527,4:0.007157):0.020955,(5:0.001459,6:0.001503,7:0.001519):0.017234):0.077299); END; BEGIN TREES; Title '16S_ML_Tree'; ID 0160ea8c8aab6; LINK Taxa = 'Tropidurus_16S'; TRANSLATE [0] 1 Plica_plica_AMCC_106953, [1] 2 T_catalanensis_SMF_100093, [2] 3 T_catalanensis_SMF_100090, [3] 4 T_catalanensis_UFRGST_2890, [4] 5 T_etheridgei_SMF_101595, [5] 6 T_etheridgei_SMF_101596, [6] 7 T_etheridgei_LG_1096, [7] 8 T_guarani_SMF_100095, [8] 9 T_guarani_SMF_100096, [9] 10 T_lagunablanca_SMF_103320, [10] 11 T_spinulosus_AMCC_204478, [11] 12 T_spinulosus_SMF_100094, [12] 13 T_spinulosus_IIBPH_3463, [13] 14 T_tarara_SMF_103314, [14] 15 T_tarara_SMF_103315, [15] 16 T_tarara_SMF_103316, [16] 17 T_teyumirim_AMNHFS_20281; TREE tree_1 = (1:0.036694,(((2:0.000003,3:0.002146):0.001782,4:0.004427):0.015874,((5:0.000003,7:0.000003):0.000002,6:0.000003):0.013551):0.06056,((((8:0.000002,9:0.000002):0.002013,(11:0.000002,12:0.001986):0.001976):0.003236,13:0.011397):0.018831,((10:0.000003,((14:0.000003,16:0.000003):0.000002,15:0.000003):0.010103):0.00312,17:0.021272):0.015827):0.11164); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1515763681517; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 7534985045343838313; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 1132254944807709870; mqVersion 320; checksumv 0 3 1736711453 null getNumChars 536 numChars 536 getNumTaxa 17 numTaxa 17 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 161879.0 sumSquares 4.6116860184275374E18 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 220; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 976 555; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #7534985045343838313 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 0160ea8c12ae5; toggleUseWeights off; endTell; setAssignedID 1880.1515763570269.4816135412223401814; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 756 483; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '(1:0.049303,(((8:0.001549,9:0.00157):0.004005,(11:0.001559,12:0.003684):0.003178,13:0.016503):0.033581,(10:0.003103,(14:0.001488,15:0.001683,16:0.001531):0.009408,17:0.02526):0.020477):0.152493,(((2:0.001543,3:0.003688):0.003527,4:0.007157):0.020955,(5:0.001459,6:0.001503,7:0.001519):0.017234):0.077299);'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; makeTreeWindow #7534985045343838313 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 2; setTreeBlockID 0160ea8c8aab6; toggleUseWeights off; endTell; setAssignedID 1910.1515763576095.8881353894909451957; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 756 483; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #1132254944807709870 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 756 483; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;