#NEXUS [written Tue Nov 07 10:00:47 PST 2017 by Mesquite version 3.2 (build 801) at samsung-galaxy-s7-edge.seattleu.edu/10.176.60.161] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=28; TAXLABELS Crangonyx_pseudogracilis Acartia_hudsonica Aglaodiaptomus_leptopus Boeckella_gracilis Calanus_finmarchicus Calanus_glacialis Calanus_helgolandicus Calanus_hyperboreus Calanus_marshallae Calanus_pacificus Calanus_sinicus Cyclops_scutifer Dioithona_oculata Eodiaptomus_wolterecki_wolterecki Eurytemora_affinis Limnocalanus_macrurus_macrurus Megacyclops_viridis_viridis_ Mesocyclops_edax Mesocyclops_longisetus_longisetus Osphranticum_labronectum Pseudocalanus_acuspes Pseudocalanus_elongatus Pseudocalanus_minutus Pseudocalanus_moultoni Pseudocalanus_newmani Temora_longicornis Thermocyclops_crassus Tigriopus_californicus ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=2838; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = -; MATRIX Crangonyx_pseudogracilis --------------------------------------------GGTGCTTGGTCAGGAGCTTTAGGGACAGCTTTAAGAATAATTGTACGAATTGAGTTAGCCACACCTGGAAATCTTATTGAAGACGATCAAATCTACAACGTGATAGTGACAGCTCATGCATTTGTTATAATTTTTTTTATAGTCATACCTATTATAATTGGAGGATTTGGTAACTGACTGTTACCACTTATACTTGGTAGACCTGATATAGCTTTCCCGCGGATAAACAATATAAGATTTTGGCTCCTACCTCCGTCACTTTGTCTCTTGCTAATAAGTAGTTTAGTGGAAAGAGGTGTTGGAACAGGCTGAACAGTCTATCCGCCTCTGTCCTCAACAACAGCTCATAGAGGTGCATCAGTGGATTTAGCTATCTTTTCCTTACACTTGGCCGGAGCCTCATCAATCTTAGGAGCCATTAATTTTATTTCCACAGTAATTAATGTAAAAGTAAAAAATCTTCTTGCAGATCAAATTACTCTGTTTGTTTGGTCAATTTTCTTTACAACAATCCTTCTACTTTTATCTCTTCCTGTATTAGCAGGAGCTATCACAATATTACTAACAGATCGTAATCTTAATACATCCTTCTTTGATCCGTCAGGGGGTGGAGA-TCCCATCCTTTA---------------------------------------- Acartia_hudsonica ---------------------------------------------------GATCAGGTATAGTGGGGACTGGTCTTAGAATAATTATCCGTATAGAGTTGGGGCAGGCGGGTAGCTTAATCGGAGACGATCAAGTGTATAATGTAGTAGTTACTGCGCACGCGTTTATCATAATCTTTTTTATAGTAATACCTATTTTAATCGGAGGTTTCGGCAACTGACTCATCCCTTTAATACTAGGGGCCGCTGATATAGCATTCCCTCGAATAAATAATATAAGTTTCTGACTTTTATTACCGGCGTTAGTTATACTCCTATCAAGATCTTTGGTAGAGAGAGGTGCAGGAACAGGTTGGACGGTATACCCCCCCCTTTCAAGCAATATTGCCCACGCGGGGGCTTCAGTGGATTTCGCTATTTTTTCACTACATTTGGCAGGGGCGAGCTCAATCCTAGGGGCAGTAAACTTCATCTCAACTATCGGAAATTTACGATCGTTTGGTATGATCATGGAGTTGATACCTTTGTTCTCTTGAGCTGTTTTAATTACTGCAGTGCTTCTTTTACTCTCACTCCCTGTACTGGGGGGGGCAATTACTATGCTT-TAACAGACCGTAATCTAAACTCCTCTTTTTACGAT---------------------------------------------------------------------- Aglaodiaptomus_leptopus -----------------------------------TTAATTGCCGGGGCATGATCTGGGATGGTGGGGACTGGGCTAAGGATAATCATTCGGATAGAATTAGGCCAAGCCGGCTCGCTAATTGGGGATGACCAAATTTACAATGTAGTTGTCACAGCTCATGCCTTTATTATAATTTTTTTTATGGTTATGCCTATTTTGATTGGCGGGTTTGGCAATTGATTAGTGCCCTTAATACTAGGCGCAGCTGACATAGCTTTCCCCCGTATAAACAACATGAGATTTTGATTCTTAATCCCGGCGTTAGTCATACTACTCTCTAGATCTCTTGTAGAAAGAGGTGCCGGAACAGGGTGGACTGTGTACCCGCCCCTTTCTAGGAATATCGCACACGCAGGGAGATCTGTGGACTTCGCTATTTTTTCTTTACATTTGGCAGGGGTAAGCTCAATCTTAGGTGCAGTTAATTTTATTAGCACACTAGGGAACCTCCGGGCATTCGGAATAATTCTAGACCGAATGCCTCTTTTTGCTTGAGCCGTTCTTATTACAGCTATTCTACTCCTTTTGTCTCTGCCTGTTTTAGCTGGGGCTATCACTATGCTCCTCACAGACCGAAATCTGAACTCCAGGTTCTACGACGCCGGAGGAGGGGGCGA-CCCTATTCTTTACCAACATCTATTT--------------------------- Boeckella_gracilis --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Calanus_finmarchicus --------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATA---------------------------------------------TGATTAGTCCCCCTAATACTTGGTGCTGCAGATATAGCTTTCCCGCGCATAAACAACATAAGATTCTGGTTCTTGATGCCAGCTTTAATTATACTACTATCTACATCCCTAGTAGAGAGGGGGGCAGGAACAGGTTGAACGGTTTACCCTCCCCTCTCAAGTAATATTGCACATGCTGGGGCTTCCGTCGACTTCGCTATTTTTTCACTCCACTTGGCAGGGGTCAGATCAATTTTAGGGGCTGTTAATTTTATTACAACTTTGGGGAATCTCCGAGTATTTGGAATGATATTGGACCGTATGCCCCTATTTGCCTGAGCCGTTTTCATCACTGCTGTCCTCCTTTTACTGTCTTTACCGGTCTTAGCGGGGGCTATCACGATACTATTAACAGATCGGAACCTAAATACGACATTTTATGATGTTGGGGGGGGGGGAGA-TCCTATTTTATACCAGCACCTCTTT--------------------------- Calanus_glacialis -----------------------------------------------------------------GGCACAGGGCTGAGTATGATTATTCGACTAGAGCTGGGCCAAGCAGGCTCACTTATTGGAGATGATCAGATCTATAACGTAGTGGTAACAGCCCACGCGTTTATCATAATCTTCTTTATAGTAATACCCATCTTAATTGGCGGGTTTGGAAACTGATTAGTTCCTTTAATGTTGGGTGCGGCGGACATGGCTTTCCCCCGAATAAATAATATGAGCTTCTGATTTCTTATGCCAGCACTAATCATGCTCCTATCAAGATCCTTAGTGGAGAGGGGCGCAGGAACGGGTTGAACTGTTTATCCCCCCCTATCAAGTAATATTGCACATGCGGGGGCTTCTGTGGATTTTGCTATCTTCTCCCTGCACTTAGCCGGAGTTAGCTCGATCTTGGGTGCTGTAAATTTTATTAGTACTTTGGGGAACCTTCGTGTGTTTGGTATACTTTTAGACCGTATGCCACTATTTGCTTGGGCGGTACTCATTACCGCTGTCCTTCTCCTATTATCATTACCCGTCCTAGCAGGAGCTATCACCATATTATTAACAGATCGAAACCTAAATACGACCTTCTATGACGTGGGGGGGGGG---------------------------------------------------------- Calanus_helgolandicus ---------------------------------------------------------------------CGGGACTCAGTATAATTATTCGTCTAGAATTAGGTCAAGCTGGGTCTTTAATTGGAGATGATCAAGTATATAACGTTGTAGTAACTGCACACGCATTTATTATAATTTTTTTTATAGTTATGCCTATTTTAATTGGAGGATTTGGAAACTGATTGGTCCCTTTAATATTGGGTGCAGCAGATATGGCATTTCCTCGTATAAATAATATAAGATTCTGGTTCTTAATGCCAGCTTTAATTATACTTTTGTCAAGATCTCTGGTTGAAAGGGGCGCAGGTACTGGGTGAACCGTGTACCCCCCCCTATCCAGAAATGTAGCCCATGCTGGAGCTTCTGTCGACTTTGCTATTTTTTCGTTACATTTAGCTGGGGTGAGATCTATTTTAGGGGCTGTAAATTTTATTAGAACCCTTGGCAATCTTCGAGTGTTGGGTATATTACTTGATCGAATGCCTCTTTTTGCCTGGGCTGTTCTAATTACTGCGGTCTTACTTCTCCTATCTCTCCCTGTTTTGGCC---------------------------------------------------------------------------------------------------------------------------- Calanus_hyperboreus --------------------------------------------------TGATCAGGAATGATTGGAACCGGGTTGAGGATAATTATTCGATTAGAATTGGGCCAGGCCGGCTCATTGATTGGAGATGATCAGATTTACAACGTAGTTGTAACTGCTCATGCTTTTATTATAATTTTTTTTATGGTTATGCCTATTTTGATTGGGGGATTTGGAAATTGATTAGTGCCTTTAATATTAGGCGCAGCAGATATGGCCTTTCCACGAATAAATAATATAAGATTCTGGTTCTTAATGCCAGCGTTAATCATACTGCTCTCAAGGTCATTAGTCGAGAGTGGGGCAGGGACTGGGTGAACTGTTTACCCCCCGCTATCAAGAAATATTGCACATGCAGGGGCATCCGTAGATTTCGCTATTTTTTCTCTTCATTTGGCCGGGGTTAGATCAATTCTGGGGGCAGTGAACTTTATTAGAACATTGGGCAATTTGCGGGTATTTGGTATATTATTAGACCGAATGCCATTGTTTGCTTGAGCTGTTTTAATTACTGCAGTCTTATTATTATTGTCACTACCGGTATTAGCCGGTGCTATTACAATACTCTTAACCGATCGGAATTTGAACACTTCATTCTATGATGTGGGCGGTGGTGGAGA-TCCTATTTTATATCAGCACTTGTTT--------------------------- Calanus_marshallae --------------------------------------------------TATTCAGGAATAGTGGGAACAGGATTAACAATAATTATCCGACTAGAGTTAGGACAAGCTGGATCGCTAATTGGAGATGATCAAATCTATACCGTAGTGGTTACAGCTCATGCTTTTATCATAATCTTTTTTATGGTAATACCCATCTTAATTGGAGGATTTGGAAATTGATTAGTTCCTTTAATGTTGGGTGCGGCGGACATGGCTTTCCCCCGAATAAATAACATGAGTTTCTGATTTCTTATGCCAGCACTAATCATGCTCCTATCAAGATCCTTAGTGGAGAGGGGCGCAGGAACGGGTTGAACTGTTTATCCTCCCCTATCAAGTAATATTGCACATGCGGGGGCTTCTGTGGATTTTGCTATCTTCTCCCTGCACTTAGCCGGAGTTAGCTCGATCTTGGGGGCTGTAAATTTTATTAGTACTTTGGGGAACCTTCGTGTGTTTGGTATACTTTTAGACCGTATGCCACTATTTGCTTGGGCGGTACTCATTACCGCCGTCCTTCTCCTATTATCATTACCCGTCCTAGCAGGAGCTATCACGATATTATTAACAGATCGAAACCTAAATACGACCTTCTATGACGTGGGGGGGGGGGGAGA-TCCTATTTTATACCAGCACCTATTT--------------------------- Calanus_pacificus -------------------------TACCTTATATTTATTGGCCGGGGCTTACTCTGGCATAATCGGAACAGGGCTCAGAATAATTATTCGACTAGAGCTGGGTCAGGCGGGGTCCTTAATTGGAGATGATCAAGTATATAATGTAGTTGTAACGGCGCATGCTTTTATTATAATTTTCTTCATGGTAATGCCCATCTTAATTGGAGGGTTTGGTAACTGACTAGTGCCTTTAATACTGGGGGCTGCTGATATGGCTTTCCCACGAATAAATAACATAAGATTTTGATTTTTAATGCCAGCCTTGATTATACTTTTATCCAGATCCTTAGTAGAGAGAGGGGCCGGGACGGGTTGAACAGTTTACCCTCCTTTATCAAGAAATATCGCCCATGCTGGCGCGTCTGTAGATTTTGCAATTTTTTCTCTCCATTTAGCAGGAGTAAGCTCGATCTTAGGCGCCGTGAATTTTATTAGAACCTTAGGAAATCTGCGAGTATTTGGAATAATTCTAGATCGTATGCCCCTGTTCGCATGGGCAGTTCTAATTACGGCTGTACTATTACTCCTCTCCTTGCCAGTTTTGGCAGGGGCTATCACAATACTTCTCACTGACCGTAACTTAAATACTACATTTTACGATGTGGGGGGGGGTGGAGA-TCCTATTCTGTATCAACATTTATTT--------------------------- Calanus_sinicus ----------------------------------------------------TTCTGGAATAATCGGAACGGGGTTGAGTATAATTATTCGATTAGAGTTAGGTCAAGCTGGCTCTCTAATTGGAGATGATCAGATTTATAATGTGGTAGTCACTGCTCACGCCTTCATTATAATTTTTTTTATAGTTATACCTATTCTGATTGGAGGGTTCGGTAACTGATTAGTGCCTTTAATATTGGGGGCGGCAGATATGGCATTCCCCCGTATAAACAATATAAGCTTTTGATTTCTCATACCTGCACTTATCATGCTTTTGTCAAGGTCTTTAGTGGAGGGGGGAGCGGGCACGGGTTGAACGGTGTACCCGCCCCTCTCAAGTAATATTGCCCATGCTGGGGCTTCAGTGGATTTTGCAATTTTCTCCCTACATTTGGCCGGGGTTAGTTCAATTTTAGGTGCGGTGAATTTCATCAGCACTTTAGGTAATTTACGAGTATTTGGAATATTACTAGACCGGATACCCCTATTTGCCTGGTCGGTATTAATTACCGCAGTCCTACTTCTACTTTCTCTCCCGGTCTTAGCAGGGGCCATTACAATACTATTAACAGATCGTAACCTGAACACCACATTTTATGATGTGGGGGGAGGAGGAGA-TCCTATTCTCTATCAGCATCTTTTTTGGTTTTTTGGTCACCCTGAGGTATAC Cyclops_scutifer --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dioithona_oculata --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Eodiaptomus_wolterecki_wolterecki ------------------------------------------CAGGAGCCTGAGCTGGGATAGTTGGGACAGGTTTAAGAATAATTATTCGTATAGAGCTGGGGCAAGCTGGAAGACTAATTGGAGATGATCAAGTTTATAATGTGGTCGTTACTGCGCATGCTTTTATCATAATTTTTTTTATAGTTATACCAATTTTAATTGGAGGATTCGGAAACTGACTGGTCCCACTTATGCTGGGAGCAGCAGATATGGCATTCCCTCGAATAAATAATATAAGATTTTGATTTTTGTTACCTGCGTTAATTATACTACTTAGGAGATCTTTGGTAGAAAGCGGAGCAGGAACAGGATGAACAGTTTATCCTCCTCTTTCAAGGAATATTGCTCACGCAGGCAGTTCTGTAGATTTTGCTATTTTTTCTCTACACTTAGCCGGGGTGAGATCAATTTTAGGTGCTGTGAATTTTATTAGAACATTAGGGAATCTTCGAGCGTTCGGGATAATTTTAGATCGAATGCCTCTATTTGCTTGGGCTGTCCTAGTTACAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------- Eurytemora_affinis -------------------------AACTTTGTATTTAATAGCGGGGGCTTGAGCAGGTATGGTTGGAACAGGCTTAAGAATAATTATTCGTATGGAGTTGGGACAAGCTGGCAGGCTTATCGGCGATGATCAAATCTATAATGTCGTAGTTACAGCTCACGCTTTTATTATAATTTTTTTTATGGTTATACCTATTCTTATTGGAGGGTTTGGTAACTGATTAGTTCCTTTAATACTCGGAGCAGCTGATATAGCTTTCCCTCGAATAAATAATATAAGGTTTTGATTTTTACTCCCGGCCTTAGTTATGCTTCTCTCTAGTTCTTTAGTAGAAAGAGGAGCTGGTACAGGATGAACAGTCTACCCACCTCTGTCAAGAAATATTGCTCACGCGGGGAGGTCTGTGGATTTTGCTATTTTTTCATTGCATCTGGCCGGTGTCAGTTCTATTTTAGGGGCTGTAAATTTTATTAGAACTTTAGGAAACTTGCGTACATTTGGTATAATTTTAGACCGAATACCTCTTTTTGCTTGATCTGTCCTGATCACTGCTGTTCTCTTGCTTTTATCTCTCCCCGTGTTAGCTGGGGCTATTACTATATTATTAACAGACCGTAATTTAAATTCAAGATTTTATGATGCAAGCGGTGGGGGGGA-TCCAATTTTATACCAACACTTATTT--------------------------- Limnocalanus_macrurus_macrurus -----------------------------------------------------TCCGGGATAGTCGGTACGGGTTTGAGTATGATTATCCGTATGGAATTAGGTCAAGCGGGGAGACTAATTGGGGACGACCAGTTATATAATGTAGTTGTGACGGCTCATGCTTTTATTATGATTTTCTTCATGGTAATGCCTATTTTAATTGGGGGCTTTGGTAATTGGTTAATTCCTCTAATGTTGGGGGCTGCGGACATAGCTTTCCCGCGGATAAATAATATAAGCTTCTGGTTTTTGATACCTGCTTTAGTAATGCTACTATCCAGGTCTCTAGTGGAGAGGGGCGCAGGAACAGGCTGGACGGTTTACCCCCCCCTATCTAGAAATGTCGCCCATGCCGGGAGGTCCGTGGACTTTGCAATTTTCTCATTACACTTGGCGGGAGTAAGGTCTATTCTGGGGGCTGTAAACTTTATTAGAACTCTAGGAAACCTACGAGTGTTTGGGATAATTCTAGATCGTATACCTCTTTTCGCTTGATCAGTCCTGATTACGGCTGTCTTATTGCTTCTTTCTTTGCCTGTGTTGGCTGGGGCGATTACTATGTTGTTGACCGACCGTAACCTAAACTCGTCGTTCTACGATGCCAGGGGGGGCGGGGAC---------------------------------------------------- Megacyclops_viridis_viridis_ --------------------------------------------------------------ATTGGAACTGGGTTAAGAATAATTATCCGCCTTGAATTAGGCCAACCAGGTTCATTGATAGGAGACGATCAAATTTATAATGTAGTAGTAACAGCCCACGCTTTTATTATAATTTTTTTTATGGTTATACCTATCTTAATTGGGGGGTTTGGGAATTGACTGGTGCCTTTAATACTTGGGGCCCCTGATATGGCATTTCCTCGAATAAATAATATAAGGTTCTGATTTCTGATCCCTGCTCTTTTTATACTACTCACCAGGTCCTTAGTAGAAAGAGGGGCAGGGACTGGTTGGACAGTTTACCCTCCGTTAAGGAGAAACATTTCTCACGCAGGTGCTTCTGTAGACTACGCAATTTTTTCTCTCCACTTAGCCGGTGTGTCATCTATTTTGGGGGCAGTAAATTTTATTAGTACCTTAGGAAATATACGTACTTTTGGAATATTTTTGGATCGTATACCTTTGTTTGCGTGAGCTGTTTTAATTACAGCTATTTTATTATTACTTTCTTTACCTGTATTAGCAGGTGCTATTACTATACTTTTAACGGATCGTAATTTAAACACTTCTTTTTATGACCCT------------------------------------------------------------------- Mesocyclops_edax -------------------------AGGTTTTTATCTTATTGCAGTGTCGTGAGCTGGTATAATTGGTACTGGATTAAGGGTGATTATTCGTTTAGAGCTTGGTCAGCCTGGTTCTTTTATAGGTGATGATCAAATTTATAATGTAGTAGTTACAGCCCATGCTTTTGTTATAATTTTTTTTATGGTTATGCCTATTTTAATTGGTGGATTTGGAAACTGACTAGTACCATTAATATTAGGTTCTCCTGATATAGCTTTCCCTCGAATAAATAATATAAGATTTTGATTTTTGGTTCCTGCTTTATTTATACTTTTAACTAGATCTTTAGTAGAAAGAGGTGCGGGCACAGGGTGAACGGTTTATCCTCCTTTGAGAAGTAATTTATCTCATTCGGGGTCATCAGTAGATTATGCTATTTTTTCTTTACATCTAGCTGGTATTTCTTCGATTTTAGGTGCTGTAAATTTTATTAGTACTTTAGGAAATATACGAACTTTAGGCATATTTTTAGATCGCACACCTTTATTTGCTTGAGCCGTTCTAATTACAGCTATTCTTTTACTCTTGTCGTTACCTGTTTTAGCTGGAGCAATTACTATATTACTAACAGATCGTAATTTAAATACTTCATTTTATGATCCTAGAGGAGGAGGAGA-TCCTATTTTATATCAACACTTATTTTGATTTTTTGGTCACCTGGGAAAGTTT Mesocyclops_longisetus_longisetus --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Osphranticum_labronectum -----------------------------------TTATTGGCGGGAGCTTGATCGGGGATAGTAGGGACAGGGTTAAGAGTGTTGATCCGGCTAGAGTTAGGTCAAGCAGGGTCTTTAATCGGGGATGATCAAATTTATAATGTAGTGGTTACTGCGCATGCTTTTGTTATAATTTTTTTTATAGTTATGCCAATTTTAATTGGGGGGTTTGGAAATTGACTAGTTCCATTGATATTAGGGGCTGCTGATATGGCTTTCCCTCGGTTAAATAATATGAGATTTTGGTTTTTGGTGCCTGCATTAGTAATACTTTTATCTAGTTCTCTGGCTGAGAGGGGGGCTGGTACAGGGTGAACTGTTTACCCTCCCCTGTCTAGTAATATTTCTCACGGAGGTAGTTCTGTTGATTTTGCTATTTTTTCTTTGCATTTAGCAGGGGTAAGATCAATCTTAGGGGCGGTAAATTTTATTAGGACATTGGGGAATTTGCGTATTTTTGGTATATTATTAGATATAATACCTTTATTTGCTTGAGCTGTGCTAATTACTGCGGTTTTATTATTATTATCTTTACCTGTTTTGGCGGGAGCTATTACTATACTTCTGACGGATCGTAACTT----------------------------------------------------------------------------------------- Pseudocalanus_acuspes -------------------------AACTTTATACTTAATAGCTGGGGCATGAGCAGGTATGATTGGGACAGGTTTAAGAATAATTATTCGAATAGAGTTAGGTCAAGCAGGATCACTAATTGGAGATGACCAAATTTATAATGTAGTCGTCACTGCGCATGCCTTCATCATAATTTTTTTCATAGTTATGCCAATTTTAATTGGGGGATTTGGTAACTGGTTAGTACCTTTAATATTAGGTGCGGCAGATATAGCTTTTCCTCGTATAAATAATATAAGGTTCTGATTTTTAATACCAGCCCTAATTATACTTCTCTCGAGGTCTCTAGTAGAGAGAGGTGCAGGTACAGGGTGAACTGTATACCCTCCTCTATCAAGAAATATTGCTCATGCTGGAGGTTCTGTAGATTTTGCTATTTTTTCTCTGCACCTCGCAGGAGTAAGATCTATCTTAGGTGCTGTAAATTTTATCAGTACTTTAGGTAATTTACGAGTATTTGGTATGTTATTAGACCAAATACCATTATTTGCTTGATCCGTGTTAGTGACAGCTATTCTTCTACTGCTGTCATTACCAGTGTTAGCTGGTGCTATTACCATATTGTTAACTGACCGAAACCTAAACACCTCTTTCTATGACGTAGGTGGAGGTGGAGA-TCCTATTTTATATCAACACCTTTTT--------------------------- Pseudocalanus_elongatus ----------------------------CTTATACTTAATAGCTGGGGCATGGGCAGGAATAATTGGTACAGGGTTGAGAATGATTATTCGAATAGAGCTAGGTCAGGCCGGGTCCTTAATCGGGGATGACCAGATTTATAATGTTGTTGTCACAGCACACGCTTTTATCATAATTTTTTTTATAGTTATACCAATTTTAATTGGAGGGTTTGGTAATTGGTTAGTCCCTCTTATATTAGGGGCAGCAGATATAGCTTTCCCACGTATAAATAACATGAGTTTTTGATTTTTAATACCTGCCCTAATTATACTTCTCTCAAGTTCTCTAGTTGAAAGAGGCGCAGGCACAGGGTGGACTGTTTACCCTCCGTTATCGAGGAATATCGCACACGCAGGAGGGTCTGTAGACTTTGCTATTTTCTCTCTTCATTTAGCGGGGGTAAGATCTATCTTAGGTGCGGTAAATTTTATTAGTACTTTAGGTAATTTACGAGTATTTGGCATACTTTTAGATCAGATACCATTATTTGCGTGGTCTGTATTAGTAACGGCTATTCTTTTACTACTGTCCTTACCCGTCTTAGCTGGAGCTATTACTATATTATTAACAGATCGAAATTTAAATACTTCTTTTTATGATGTAGGGGGAGGGGGAGA-CCCTATTTTATATCAACATTT------------------------------- Pseudocalanus_minutus -----------------------------------TTAATAGCCGGGGCGTGGGCAGGAATAATTGGGACAGGACTGAGAATAATCATTCGAATAGAGCTAGGCCAAGCAGGGTCACTAATTGGAGATGACCAAATTTATAATGTAGTTGTGACAGCTCATGCATTTATCATAATTTTTTTTATAGTTATACCCATCTTAATTGGGGGCTTTGGTAATTGACTAGTACCCTTAATATTAGGTGCGGCAGATATAGCTTTTCCACGTATAAATAATATGAGATTCTGATTTTTAATACCGGCTTTAATCATACTTCTTTCAAGATCCTTAGTTGAAAGGGGGGCAGGTACAGGATGAACTGTTTACCCCCCATTATCCAGAAATATTGCTCATGCAGGAGGGTCAGTAGATTTTGCTATTTTTTCTTTACATTTAGCAGGTGTTAGATCTATTTTAGGTGCTGTAAATTTTATTAGCACATTAGGTAATTTACGAGTATTTGGTATACTCCTAGACCAAATACCTTTGTTTGCGTGGTCTGTATTAGTCACAGCCATCCTTTTATTACTATCCTTACCAGTATTAGCTGGGGCTATTACTATATTGTTGACAGATCGTAACTTAAACACATCATTTTATGATGTAGGGGGTGGTGGGGA-TCCTATCTTATACCGA------------------------------------ Pseudocalanus_moultoni -----------------------------------TTAATAGCTGGGGCATGGGCAGGTATGATTGGTACAGGCTTAAGAATAATTATTCGAATAGAATTGGGTCAGGCTGGATCACTAATCGGGGATGACCAAATTTATAATGTAGTTGTTACTGCGCATGCGTTTATCATAATTTTTTTTATAGTTATACCAATTTTAATTGGAGGTTTTGGTAATTGACTAGTCCCCCTTATATTAGGGGCAGCAGATATAGCCTTTCCTCGTATAAATAACATAAGATTTTGATTTTTAATGCCAGCCTTGATCATGTTACTTTCAAGATCCTTAGTTGAGAGAGGAGCTGGGACGGGGTGGACAGTTTATCCTCCACTATCAAGAAATATCGCGCATGCAGGAGGTTCTGTTGACTTTGCTATTTTTTCACTACATTTGGCTGGTGTGAGATCTATTTTAGGCGCTGTAAATTTTATTAGTACTCTAGGGAATTTACGAGTATTTGGAATACTTTTAGATCAAATACCATTGTTTGCATGATCTGTCTTGGTGACAGCTGTTTTACTATTATTATCTTTACCAGTGTTAGCTGGTGCAATTACAATATTGTTAACAGACCGTAACTTAAACACTTCTTTTTATGATGTAGGAGGGGGAGGAGA-CCCTAT---------------------------------------------- Pseudocalanus_newmani -----------------------------------TTAATAGCTGGTGCATGAGCAGGTATAATTGGGACAGGGTTAAGAATAATTATTCGAATAGAGTTAGGTCAAGCAGGATCATTGATTGGAGATGATCAGATTTATAATGTAGTTGTTACTGCACATGCATTTATTATAATTTTTTTCATGGTCATACCAATCTTAATTGGGGGATTTGGCAACTGATTAGTACCTCTAATACTGGGTGCGGCAGATATGGCTTTTCCACGTATAAATAATATAAGGTTTTGATTTTTAATACCAGCCTTAATTATACTTCTTTCTAGATCTTTAGTAGAAAGAGG-GCAGGTACAGGATGAACCGTATATCCTCCTCTTTCAAGAAATATTGCCCATGCTGGTGGATCTGTGGACTTTGCCATTTTTTCTTTACACCTCGCAGGGGTAAGATCTATCTTAGGTGCTGTTAATTTTATTAGTACTCTAGGTAATCTGCGAGTATTTGGTATATTGCTAGACCAGATACCATTGTTTGCTTGATCCGTACTAGTTACAGCTATTCTTTTACTCCTTTCTTTACCAGTTTTAGCTGGAGCTATTACTATATTATTGACGGACCGAAACTTAAATACCTCTTTCTACGATGTTGGTGGGGGTGGGGA-TCCTATCTTATATCAA------------------------------------ Temora_longicornis -----------------------------TTATATTTATTAGCGGGTGCTTGGGCGGGGATGGTGGGCACAGGGTTGAGTATGATTATTCGTATAGAGTTAGGCCAACCTGGTAGCCTGATCGGGGACGATCAGATTTATAATGTGGTGGTAACGGCTCATGCCTTTGTGATAATTTTTTTTATGGTAATGCCTATTTTAATTGGGGGGTTCGGGAACTGGCTAGTTCCTTTAATGTTAGGGGCAGCAGATATGGCGTTTCCTCGAATGAATAATATAAGGTTCTGATTCCTTATACCTGCTCTGCTAATATTGCTTATAAGTTCAATGGTAGAGAGTGGAGCAGGTACGGGGTGAACTGTTTACCCCCCTTTGTCAAGTAACGTGGCCCATTCTGGGGGTTCAGTAGACTTTGCCATTTTTTCTCTTCATCTGGCGGGGGTGAGGTCTATCCTGGGCGCAGTAAACTTTATTAGCACTTTGGGTAATTTGCGGGTGTTTGGGATGGTGCTAGATCGTCTGCCTTTGTTTGCGTGGGCCGTTTTAATTACTGCTGTTCTACTACTACTCTCTCTCCCGGTGTTGGCGGGAGCTATTACAATATTGCTGACAGACCGAAACCTAAACTCTTCTTTCTACGATACGGGGGGGGGAGGGGA-TCCTATTTTATACCAGCACTT------------------------------- Thermocyclops_crassus GGTCAACAAATCATAAAGATATTGGAACTTTATATCTTATTGCGGGGGTTTGAGCTGGAATAATTGGTACTGGTTTAAGGGTTATCATTCGATTAGAATTAGGACAACCTGGTTCTTTAATAGGGGATGATCAGATCTACAATGTCGTAGTGACTGCCCATGCTTTTATTATAATTTTCTTTATGGTAATGCCTATCTTGATTGGGGGATTTGGTAATTGGCTTGTCCCTCTTATACTAGGTTCTCCAGATATAGCCTTTCCTCGTATAAACAATATGAGATTTTGATTTTTAGTGCCTGCCTTGTTTATGCTATTAACAAGATCTTTAGTAGAAAGGGGTGCTGGCACTGGATGAACAGTATACCCCCCCTTAAGAAGAAACTTATCGCACTCTGGGTCTTCGGTAGATTATGCTATTTTTTCCCTTCATTTAGCGGGTGTATCTTCTATTCTAGGGGCAGTTAACTTTATTAGTACAATTGGTAATATGCGGACCTTGGGGATATTTTTAGATCGTACACCTTTATTTGCCTGAGCGGTTTTAATCACTGCTATTTTGCTTTTATTGTCTCTACCTGTTTTAGCTGGAGCTATCACCATATTATTGACTGACCGAAATCTAAATACTTCTTTTTATGACCCAAGAGGGGGCGGAGA-CCCTATTTTATACCAGCACCTCTTTTGATTTTTTGGTCACCCTGAAGTTTA- Tigriopus_californicus --------------------------------------------------------------------------------------------------------------------------GGAAGTGATCAGCTTTATAATGTTTTAGTCACTGCTCATGCTTTTGTAATAATTTTTTTTATGGTTATACCAGTACTGATTGGGGGTTTTGGAAACTGGTTAGTGCCTTTAATATTAGGGGCACCGGATATAGCATTTCCTCGCTTAAATAATCTAAGGTTCTGATTTTTAATGCCTTCTCTTTTACTATTACTCTTGAGGGGGGCGGTTGAAGCAGGTGCTGGAACAGGGTGAACGGTTTACCCTCCTTT---AAGAGCGGTAGGGCACGCTGGGAGATCCGTGGATTTTGCTATCTTTTCTTTACACTTGGCGGGAGTTTCATCACTGTTAGGGGCTGTCAATTTTATTAGAACTATTTTTAATTTGCGAGTATTTGGAATATATTTGGACTTAGTTCCTTTATTTGTTTGAGCCGTATTGCTTACAGCTGTGTTGCTTTTACTATCATTACCCGTATTGGCTGGAGCGATTACAATGCTTCTCACGGATCGTAATTTAAATTCCTGTTTCTACGATGTAAGAGGGGGGGGTGA-TCCTATTCTGTATCAACAT--------------------------------- Crangonyx_pseudogracilis ------------------------------------------------------------------GGTATTTTGACTGTGCTAAGGTAACATAATCATTTGTTTTTTAATTGTTAACTAGAATGAACGGCTGTACG---GTATAAATCTTTTTTAATTTAAATTTTTAAATTTAAATTTAAGTAAAAATGCTTAAATAGTAAAAGGGGACGATAAGACCCTA-AAAGCTTTAATTATATTTGTACAAGTAAAGTTATTTTA-AATTAGTATATTATTAATATTAGCTGGGGAAGTTTTTATATATTAACTATTTTTGTTAGT-ACTCTAGGCTGTAAGATCCTTTATATAAGGATAAATAGAGAGAGTTACTTTAGGGATAACAGCATAATAATTTTGTAGAGTTCTTATTAATAAAATTGACTGTGACCTCGATGTTGAATTAAGGGATCTAACTGGAGCATAAAATAG--ATAGAGGGTTTGTTCAACC----------------------------------------------------AAAGTTGCTGCGGTTAAAAGGCTCGCAGTTGAATGTC---AGTGCCGGGCGCAGGTT-------------------------------------------------------------------------------------------------------------- Acartia_hudsonica ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGATTGAGGTACTCTAGGGATAACAGCGTTATAATTAATAAAGTTCATATTGAATTAATTGTTTGCGACCTCGATGTTGAATTGCGGA-GT-CTGATAGAGTAGAAATTATCAAGCTACGGGTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Aglaodiaptomus_leptopus ---------------------------------------------------------------------------------------------------TAGCTCTTTTATTGAGAGATAGAATGAACGGTGCCACT---AAAATAGATTGTTT--CTTCGTTAACTTGAATTTTTTGTTAAGTGAAAAGACTTAAATGCCTCCTTTAGACGATAAGACCCTATGAAGC------------TTTATTACTATG---------------------TAAT----TTTTTTGGGGCA--------AACTATAATAAT--TATTATT-ATTCTGGAGCTGCTTTTTGATCT-TTTTGAATTTAAAGAATAAGCTACTCTAGGGATAACAGCATAATTTTTATA-AAAGTTCTCATTAAAATAAAAGATTGTGACCTCGATGTTGAATTAAGAAAAATAATTTGTGCAGAAGCTAATTATTTTTAGTCTGTTCGACTAAATTTTCTTA-----------------------------------------AAAGTTGTTGTGGTTAAAAAGCTCGTAGTTGGATCTCGGCAGTGCTCAAAGCAAGCTTGAAGACAAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTTAGAGGTTCGAAGGCGATTAGATACCGCCCTAGTTCTAACCATAAACGA Boeckella_gracilis -TCGCCTGTTTTATCAAAAACATCACTTAATATATAAGCTTTACCTGCTCAATGATAATAAT-TAAATAGCCAAATTA-TGCTAAGGTAGCATAATAATTTGCTTTATAATTAAAAGATAGAATGAATGGTATTTCT---AAAAGTAACTATTTTATCTTAA--AATTAAATTTTTCTAAAGTTGAAAATTACTTTATTAATTTTTTAGACGATAAGACCCTATGAAGC------------TTTATTAGTACAAAAAATTATAAACAAAAAAATTAAT----TTTTTTGGGGCA--------AAA---AAAAAATTTTTTATT-TTTTTACAGAATAATAATGATCT-TTTAGAATTTTAAGAGAAAGCTACTCTAGGGATAACAGCATAATTTTTATA-AAAGTTCTTATTAAAATAAAAGTTTGTGACCTCGATGTTGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Calanus_finmarchicus -----------------------------------------------CTCAGTGA--ATATT-TAAACAGCCGCGTTAGTGTTAAGGTAGCATAGTAATTAGTTTCTTAATTGGGAAATAGGATGAATGGTTTCACT---AAAATATAGTTTTT-ATCCTCATTTGCGAAATTTTAATCTAAGTGAAAATACTTATCAGTTGTACTAGGACGAGAAGACCCTATGAAGC------TGGCAAACTATTAATACA-TATTCCTATTATTTATTAGTTTAT----TT-TTTGGGGTA--------AAATTTAATAATACTATTAAC-ACAATTGTACTAAATTACATCCT-TTAGGAATT--ATGAAGAAGCTCCTCTAGGGATAACAGCATTATGCTTAAA-AGAGTTCTTATCAGAATAATGGTTTGTG--------------------------------------------------------------------------------------------------------------------AAAGTTGTTGTGGTTAAAAAGCTCGTAGTTGGATCTCGGC------------------------------------------------------------------------------------------------------------------------------- Calanus_glacialis ------------------------------------------------------------------------GCGTTAGTGTTAAGGTAGCATAGTAATTAGTTTCTTAATTGGGAAATGGAATGAATGGTTTCACT---AAAATATGATATTT-ATTCTAATTTGCGAAATTTTAATCTGAGTGAAAATACTCAGAAGATATATTTAGACGAGAAGACCCTATGAAGC------TGGTAGACTTCCAATGTAATTATACGATAGTTCATGAGTTTAT----TT-TTTGGGGTA--------AAATTTAATAATAGTATTAAT-ATTGGCTTACTAAATAATATCCT-CTTGGAATT--ATGAAAAAGCTCCTCTAGGGATAACAGCATTATGCTTAAA-AGAGTTCTTATCAGAATAAGCGTTTGTGAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAAGACAAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTTAAAGGTTCGAAGGCGATTAGATACCGCCCTAGTTTTAACCATAAACGA Calanus_helgolandicus ---CGCCTGTTTAACAAAAACATCGTAAAATAGATTTATATTGCCTGCTCAGTGA--GTATT-TAAACAGCCGCATTAGTGTTAAGGTAGCATAGTAATTAGTTTTTTAATTGGAAAATGGAATGAATGGCTCCACT---AAAGCATAGTATTT-ATACTAAAAAATGAAATTTTAATTTAAGTGAAAATACTTAAATGATATATTTAGACGAGAAGACCCTATGAAGC------TGGTAGACCATAAGTGTAATTATTTCA-TAGTAGCAGGTCTAT----TT-TTTGGGGTA--------AAATTTAATAATTATATTAAT-ACAGGTTTGTTCAAACTTATCCT-TCTGGAATT--ATAAATAAGCTCCTCTAGGGATAACAGCATTATGCTTAAA-AGAGTTCTTATCAGAATAAGCGTTTGTGACCTCGATGTTGAAT-----------------------------------------------------------------------------------------------------AAAGTTGTTGTGGTTAAAAAGCTCGTAGTTGGATCTCGGCAGTGCTCAAAGCAGGCTTGAAGACAAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTTAAAGGTTCGAAGGCGATTAGATACCGCCCTAGTTTTAACCATAAACGA Calanus_hyperboreus ------------------------------------------------------------------------GCGTTAGTGTTAAGGTAGCATAGTAATTAGTTTTTTAATTGGAAAATGGAATGAATGGTTTCACT---AAGATATGGTATTT-ATGCTAATAAATGAAATTTTAATTTAAGTGAAAATACTTAAAAGATCTTTTAAGACGAGAAGACCCTATGAAGC------TGATAGACTATAAATATAATTATTATA-AATTTTTAAGTTTAT----TT-TTTGGGGTA--------AAATTTAATAATTTTATTTAA-ATAAGCTTATTTTAATTGATCCT-TTAGGAATT--ATGAAAAAGCTCCTCTAGGGATAACAGCATTATACCTATA-AGAGTTCTTATCAGAATGGGTGTTTGTGACCTCGATGTTGAATA-------------------------------------------------------------------------------------------------------------------------------------------------------------TGAAGACAAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTTAGAGGTTCGAAGGCGATTAGATACCGCCCTAGTTCTAACCATAAACGA Calanus_marshallae ------------------------------------------------------------------------GCGTTAGTGTTAAGGTAGCATAGTAATTAGTTTCTTAATTGGGAAATGGAATGAATGGTTTCACT---AAAATATGATATTT-ATTCTAATTTGCGAAATTTTAATCTGAGTGAAAATACTCAGAAGATATATTTAGACGAGAAGACCCTATGAAGC------TGGTAGACTTCCAATGTAATTATACGATAGTTCATGAGTTTAT----TT-TTTGGGGTA--------AAATTTAATAACAGTATTAAT-ATTGGCTTACTAAATAATATCCT-CTTGGAATT--ATGAAAAAGCTCCTCTAGGGATAACAGCATTATGCTTAAA-AGAGTTCTTATCAGAATAAGCGTTTGTGAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Calanus_pacificus ------------------------------------------------------------------------------------------------AATTAGTTTTTTAATTGGAAAATAGAATGAACGGTTTCACT---AAAATAAAGTATTT-ATTCCATGTTGCGAAATTTTACTCTGAGTGAAAATACTCAGCAGATATATTTAGACGAGAAGACCCTATGAAGC------TGCTAGGCCAAAAAGATAATTATTTCA-TAGTTGCAGGCTTAT----TT-TTTGGGGTA--------AAATTTAATAAAAGTATTAGT-ATTAATTTTCTTAATTGTATCCT-CTGGGAAAT--ATGAAGAAGCTCCTCTAGGGATAACAGCATTATACCTAAA-AGAGTTCTCATCAGAATAGGTGT-------------------------------------------------------------------------------------------------------------------------AAAGTTGTTGTGGTTAAAAAGCTCGTAGTTGGATCTCGGCAGTGCTCAAAGCAGGCTTGAAGACAAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTTAAAGGTTCGAAGGCGATTAGATACCGCCCTAGTTTTAACCATAAACGA Calanus_sinicus ----------------------------------------------------------------------CCGCGTTAGTGCTAAGGTAGCATAATAATTAGTTTTTTAATTGGAAAATGGAATGAATGGTTTCACT---AAAATATAGCATTT-ACACTAGTAAGTGAAATTTTAATTTAAGTGAAAATTCTTAAAAGACCCACTTAGACGAGAAGACCCTATGAATC------TGGTAAACTAAGAATGTGCCTAC---AATAGTTAATTGTTTAT----TT-TTTGGGGTA--------AAAATTAATAAAAATATTAAT-AAATACTTATTTAACTTAATCCT-CTAGGAAAC--ATGAAGAAGATCCTCTAGGGATAACAGCATTATACTTAAA-AGAGTTCTTATCAGAATAAGTGTTTGTGACCTCGATGTTGAATTAAATACTCCCGTGTGTGTAGGAGCTCACTGGAGACGGTCTGTTCGACCTATAATATTTACATGATTTGAGTTAAAATCGACGTAAGTCAGATTGGTTTC-AAAGTTGTTGTGGTTAAAAAGCTCGTAGTTGGATCTCGGCAGTGCTCAAAGCAGGCTTGAAGACAAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTTAAAGGTTCGAAGGCGATTAGATACCGCCCTAGTTTTAACCATAAACGA Cyclops_scutifer --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Dioithona_oculata --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Eodiaptomus_wolterecki_wolterecki --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Eurytemora_affinis ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGTTGTTGTGGTTAAAAAGCTCGTAGTTGGATTTCGGCAGTGCTCAAAGCAAGCTTGAAGACAAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTTAGAGGTTCGAAGGCGATTAGATACCGCCCTAGTTCTAACCATAAACGA Limnocalanus_macrurus_macrurus ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGTTGTTGTGGTTAAAAAGCTCGTAGTTGGATTTCGGCAGTGCTCAAAGCAAGCTTGAAGACAAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTTAGAGGTTCGAAGGCGATTAGATACCGCCCTAGTTCTAACCATAAACGA Megacyclops_viridis_viridis_ ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTCTGTTGCGGTTAAAAAGCTCGTAGTTGGCGCTCGGCAGTGCTCCAAGCAGGCTTGGCGACTCACTGCTGCGAAAGCGTTTGCCAAGTACGTTTTCATTAATCAAGAACGAAAGTTAGAGGTTCGAAGGCGATCAGATACCGCCCTAGTTCTAACCATAAACGA Mesocyclops_edax --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Mesocyclops_longisetus_longisetus --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Osphranticum_labronectum --TCGCCTGTTTATCAAAAACATCGCCTTTAAAAAAGGTAATACCTGCTCAATGA-AAGATT-TAAATAGCCCTATAA--GCTAAGGTAGCATAATAATTTGTTTCTTAATTGGAAACTAGAATGAACGGTTTTATC---AAAACTGTATGTTTAAATTAAAT---TAAAATATTTATTTAAATGAAAAGATTTAAATATTTGTTTTAGACGATAAGACCCTATGAATC-------------TTAATAATTCTAATATATTATAAATTATAAA-TTAT----TTATTTGGGGAA--------AATTATAATTTTTTTATTAAA----------AGATAAATTGATCTGTCTTCAATTTTCTGAAAAAGATACTCTAGGGATAACAGCGTTATTTTTGTA-AAAGCCCGGATTGAAACAAAAAATTGTGACCTCGATGTTGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pseudocalanus_acuspes ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTGG--------------------------------------------------------------------------------------------------------------------------------------- Pseudocalanus_elongatus ----------------------CTTAAATCATAATTTATACTGCCTGCTCAATGA-AAAATT-TTAATAGCCGCGGTAGTGCTAAGGTAGCATAATAATTAGCTTTTTAATTGAAAGATGGAATGAAAGGTTTCACT---AGAAAAATATATTTAATATTAAAAAATGAAATTTTATTTTTAATGAAAATATTAAAATATTTTTATTAGACAAAAAGACCCTATGAAGCTAAAGGTGGTAAATTAAAAATATAAAAGT-----TATTATTATACCTAT----TT-TTTGGGGTA--------AAATCTAATATCAATATTTTT-ATTCATT--TCTAAAAAGAGCCT-TTAGGAACT--ATGAAAAAGCTCCTCTAGGGATAACAGCATAATACTTACA-AAAGTTCTTATTAGAATAAGTGTTTATGACCTCGATGTTGAATTAAATATTAATATTTGTGAAGTAGCTATTATTAATTAGTCTGTTCGACTAAAAATTT--------------------------------------------AAAGTTGTTGTGGTTAAAAAGCTCGTAGTTGGATCTCGGCAGTGCTCAAAGCAGGCTTGAAGACAAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTTAGAGGTTCGAAGGCGATTAGATACCGCCCTAGTTCTAACCATAAACGA Pseudocalanus_minutus --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pseudocalanus_moultoni ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGTTGTTGTGGTTAAAAAGCTCGTAGTTGGATCTCGGCAGTGCTCAAAGCAGGCTTGAAGACAAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTTAGAGGTTCGAAGGCGATTAGATACCGCCCTAGTTCTAACCATAAACGA Pseudocalanus_newmani ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTGG--------------------------------------------------------------------------------------------------------------------------------------- Temora_longicornis ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGTTGTTGTGGTTAAAAAGCTCGTAGTTGGATTTCGGCAGTGCTCAAAGCAAGCTTGAAGACAAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTTAGAGGTTCGAAGGCGATTAGATACCGCCCTAGTTCTAACCATAAACGA Thermocyclops_crassus ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGTTGTTGTGGTTAAAAAGCTCGTAGTTGGATCTCGGCAGTGCTCCAAGCAGGCT-------------------------------------------------------------------------------------------------------------- Tigriopus_californicus ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGTTGTTGCGGTTAAAAAGCTCGTAGTTTGAC-TCGGCAGTGCTCAAAGCAGGCTTGGCGACAAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTTAGAGGTTCGAAGGCGATCAGATACCGCCCTAGTTCTAACCATAAACGA Crangonyx_pseudogracilis ------------------------------------------------------------------------------------------------------------------------------GGTGGACGCTGGGGTGTGA---GAACCAACAC--------------GGCACGGACTTCGGGTTGCTTGTCAGCTTGCTGGCCTT---------CCAGGCGTCGCACC----GACCGT---------------------GTCTCACAAACTCCCGTCCGTGACAAGCCTC------------------------CTCGCCCGCGTACATATCTTTCGGAGGGACCGGCGGCTTCGCCACGTCTGTGCTGGCTCACTGGCCTGACTGGGAGTTGCTTAGGTTCTCTTTGTGGTTTCAGAGTCACCTTGAGTAAATCAGAGTGC------------------CAAAGCAGT-------------CGTAGGGGCCGCGCCCTGTGAAAAGTCTTGACGGACTGAC--TGGTTATGCATGGCATGTCGGAAGACGACGTCGCGTGCTGGCTTATCAGTGGTATAAGCCAGCCGCGACG--TACTGATTAAAAGGGACGGTAGGGCATTGGTATTGCGAGGCGAGAGGTGAAATTCTATGACCC--CCGCAAGACCTCCTGAAGCGAAC---------------------- Acartia_hudsonica --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Aglaodiaptomus_leptopus TGCCAGCTAGCGATCTGCAGGCGTTTTACTATACGACCTTGCAGGGAGCTTCCGGGAAACCAAAGCTTGTGGGTTCCAGGGGAAGTATGGTTGCAAAGCTGAAACTTAAAGGAATTGACGGAAAGGAGTGGAGCCTGTGGCTTAATTTGACTCAACACGGGAAATCTCACCAGGCCCGGACACGAGAAGGATTGACAGATTGATAGCTCTTTCTTGATTTCGTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGTGATTTGTCTGGTTAATTCCGATAACGAACGAGACTCTGTCCTGCTAACTAGTGTCTGCTTCTTTTCTGAGCAGATTATTCTTAGAGGGACTGGTAGCTCTTAGCTACACGAGATTGAGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACACGCGCTACACTGAATGGATCAGCTAGTCCCTCTCCGAGAGGAGCGTAAACTGTTGAACCCCATTCGTGGTAGGGATCGGAGCTTGCAATTGTTCTCCGTGAACCAGGAATTCCCAGTAGGCGCAAGTCATAAGCTTGCGTCGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGAGCGTTTTAGTGAGGTCCTCGGACTGCTTGCCTGGCGGTTCACGCTGCCTCGCTGGTGGAAAGACGACCAAACTGTAGC---------------------- Boeckella_gracilis --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Calanus_finmarchicus -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGATTCCCTTAGTAATGGCG Calanus_glacialis TGCCAGCTAGCGATCTGCGGACGTTTTTTTTGTAGACTCCGCAGGAAGCTTCCGGGAAACCAAAGCATTTGGGTTCCAGGGGAAGTATGGTTGCAAAGCTGAAACTTAAAGGAATTGACGGAAAGGAGTGGAGCCTGTGGCTTAATTTGACTCAACACGGGAAATCTCACCAGGCCCGGACACTGGAAGGATTGACAGATTGATAGCTCTTTCTTGATTCGGTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGTGATTTGTCTGGTTAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGATTCCCTTAGTAATGGCG Calanus_helgolandicus TGCCAGCTAGCGATCTGCGGACGTTTTTTTTGTAGACTCCGCAGGAAGCTTCCGGGAAACCAAAGCATTTGGGTTCCAGGGGAAGTATGGTTGCAAAGCTGAAACTTAAAGGAATTGACGGAAAGGAGTGGAGCCTGTGGCTTAATTTGACTCAACACGGGAAATCTCACCAGGCCCGGACACTGGAAGGATTGACAGATTGATAGCTCTTTCTTGATTCGGTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGTGATTTGTCTGGTTAATTCCGATAACGAACGAGACTCTGTCCTGCTAAATAGTGTCTGCTTCTCTTTTGAGCAGACAATTCTTAGAGGGACTGGCGACTCTTAGTCGCACGAGATTGAGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACACGCGCTACACTGAATAGATCAGCGTGTCCCTTTCCGAGAGGAACGTAAACCGCTGAACCCTATTCGTGGTAGGGATCGGGGCTTGCAATTATTCCCCGTGAACCAGGAATTCCCAGTAGGCGCAAGTCATAAGCTTGCGTCGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGAACGTTTTAGTGAGGTCCTCGGACTGTTTGCCTGGCGGATTACTCTGCCTGGCTGGCGGGAAGACGACCAAACTGTAGC-----------------TGGCG Calanus_hyperboreus TGCCAGCTAGCGATCTGCGGACGTTTTTTTTGTAGACTCCGCAGGAAGCTTCCGGGAAACCAAAGCATTTGGGTTCCAGGGGAAGTATGGTTGCAAAGCTGAAACTTAAAGGAATTGACGGAAAGGAGTGGAGCCTGTGGCTTAATTTGACTCAACACGGGAAATCTCACCAGGCCCGGACACTGGAAGGATTGACAGATTGATAGCTCTTTCTTGATTCGGTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGTGATTTGTCTGGTTAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGATTCCCTTAGTAATGGCG Calanus_marshallae -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGATTCCCTTAGTAATGGCG Calanus_pacificus TGCCAGCTAGCGATCTGCGGACGTTTTTTTTGTAGACTCCGCAGGAAGCTTCCGGGAAACCAAAGCATTTGGGTTCCAGGGGAAGTATGGTTGCAAAGCTGAAACTTAAAGGAATTGACGGAAAGGAGTGGAGCCTGTGGCTTAATTTGACTCAACACGGGAAATCTCACCAGGCCCGGACACTGGAAGGATTGACAGATTGATAGCTCTTTCTTGATTCGGTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGTGATTTGTCTGGTTAATTCCGATAACGAACGAGACTCTGTCCTGCTAAATAGTGTCTGCTTCTCTTTTGAGCAGACAATTCTTAGAGGGACTGGCGACTCTTAGTCGCACGAGATTGAGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACACGCGCTACACTGAATAGATCAGCGTGTCCCTTTCCGAGAGGAACGTAAACCGCTGAACCCTATTCGTGGTAGGGATCGGGGCTTGCAATTATTCCCCGTGAACCAGGAATTCCCAGTAGGCGCAAGTCATAAGCTTGCGTCGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGAACGTTTTAGTGAGGTCCTCGGACTGTTTGCCTGGCGGATTACTCTGCCTGGCTGGCGGGAAGACGACCAAACTGTAGC---------------------- Calanus_sinicus TGCCAGCTAGCGATCTGCGGACGTTTTTTTTGTAGACTCCGCAGGAAGCTTCCGGGAAACCAAAGCATTTGGGTTCCAGGGGAAGTATGGTTGCAAAGCTGAAACTTAAAGGAATTGACGGAAAGGAGTGGAGCCTGTGGCTTAATTTGACTCAACACGGGAAATCTCACCAGGCCCGGACACTGGAAGGATTGACAGATTGATAGCTCTTTCTTGATTCGGTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGTGATTTGTCTGGTTAATTCCGATAACGAACGAGACTCTGTCCTGCTAAATAGTGTCTGCTTCTCTTTTGAGCAGACAATTCTTAGAGGGACTGGCGACTCTTAGTCGCACGAGATTGAGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACACGCGCTACACTGAATAGATCAGCGTGTCCCTTTCCGAGAGGAACGTAAACCGCTGAACCCTATTCGTGGTAGGGATCGGGGCTTGCAATTATTCCCCGTGAACCAGGAATTCCCAGTAGGCGCAAGTCATAAGCCTGCGTCGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGAACGTTTTAGTGAGGTCCTCGGACTGTTTGCCTGGCGGATTACTCTGCCTGGCTGGCGGGAAGACGACCAAACTGTAGC---------------------- Cyclops_scutifer --------------------------------------------------------------------------------------------------------------------------------TGGAACTTGCGGCTTAATTTGACTCAACACTGGAAATCTCACCAGGCCCGGACACCGGAAGGATTGACAGATTGAGAGCTCTTTCTCGATTCGGTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGTGATTTGTCTGGTTAATTCCGATAACGAACGAGACTCCGTCCTGCTAAATAGTTGCAACGTCACACGTGCGTTGCAAATTCTTAGAGGGACTGGCGGCATCTAGCCGCACGAGATGGAGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGTGTTACACTGAAGGTATCAACGTGTCCCTGACCGAGAGGTCCGTAACCCGCTGAACCCCCTTCGTGGTAGGGATCGGAGCTTGCAATTATTCTCCGTGAACCAGGAATGCCCAGTAAGTGCAAGTCATAAGCTTGCATTGATTACGTCCCTGCCGTTTGTACACACCGCCCGTCGCTACTACCGATTGAACGTTTTAGTGAGGTATTTGGACCGGGCCTCTGGTGGCTCACGCCTCCAGTGCTGCGGGAAGACTCCCAAACTTGAGC---------------------- Dioithona_oculata --------------------------------------------------------------------------------------------------------------------------------TGGAGCCTGCGGCTTAATTTGACTCAACACGGGAAATCTCACCAGGCCCGGACACTGGAAGGATTGACAGATTGAGAGCTCTTTCTCGATTCGGTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGTGATTTGTCTGGTTAATTCCGATAACGAACGAGACTCTGTCCTGCTAAATAGTTGACTCGTCCTTGTTGCGGGTCAAACTCTTAGAGGGACTGGCTGCTTCTAGCAGCACGAGATTGAGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAAGGGATCAGCGTGTCCCTTCCCGAGAGGGACGTAACCCGCTGAACCCCCTTCGTGGTAGGGATCGGAGCTTGCAATTATTCTCCGTGAACCAGGAATTCCCAGTAAGCGCAAGTCATAAGCTTGCGTTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGAACGTTTTAGTGAGGTATTTGGACTGGGCCTTGGGAGGTTTCGACCTCCCTTGTTGTGGAAAGACTCCCAAACTTGAGC--TGATGCCCTTAGTAATGGCG Eodiaptomus_wolterecki_wolterecki --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Eurytemora_affinis TGCCAGCTAGCGATCTGCCGGTGTTTGATTTTCTGACTCGGCAGGCAGCTTCCGGGAAACCAAAGCTTGTGGGTTCCAGGGGAAGTATGGTTGCAAAGCTGAAACTTAAAGGAATTGACGGAAAGGAGTGGAGCCTGTGGCTTAATTTGACTCAACACGGGAAATCTCACCAGGCCCGGACACCAGAAGGATTGACAGATTGATAGCTCTTTCTTGATTTGGTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGTGATTTGTCTGGTTAATTCCGATAACGAACGAGACTCTGTCCTGTTAAATAGATCCAACCTAGTCGTAGGGTTGGAATTTCTTAGAGGGACTGGTGATTATTAGTCACACGAGATTGAGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACACGCGCTACACTGAAGTGATCAGCTAGTCCCTCTCCGAGAGGAGCGTAAACTGTTGAACCCACTTCGTGGTAGGGATCGGAGCTTGCAATTATTCTCCGTGAACCAGGAATTCCCAGTAGGTGCAAGTCATAAGCTTGCATCGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGAGTGTTTTAGTGAGGACCTCGGATTGCTTGCTGGGCGGTTCGCGCTGCCTAGCTGGCGAAAAGACGTCCAAACTGTAGC--TGATTCCCTTAGTAACGGCG Limnocalanus_macrurus_macrurus TGCCAGCTAGCGATCTGCCTGCGTTTTATTTTCTGACTGGGCAGGGAGCTTCCGGGAAACCAAAGCTTGTGGGTTCCAGGGGAAGTATGGTTGCAAAGCTGAAACTTAAAGGAATTGACGGAAAGGAGTGGAGCCTGTGGCTTAATTTGACTCAACACGGGAAATCTCACCAGGCCCGGACACCAGAAGGATTGACAGATTGATAGCTCTTTCTTGATTTGGTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGTGATTTGTCTGGTTAATTCCGATAACGAACGAGACTCTGTCCTGCTAAATAGATGCAACCTTTCTTTTGGGTTGCAATTTCTTAGAGGGACTGGCGATTATTAGTCGCACGAGATTGAGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACACGCGCTACACTGAATTGATCAGCTAGTCCCTTTCCGAGAGGAACGTAAACTGTTGAACCCAATTCGTGGTAGGGATCGGAGCTTGCAATTGTTCTCCGTGAACCAGGAATTCCCAGTAGGCGCGAGTCATAAGCTCGCGTCGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGAGTGTTTTAGTGAGGTCCTCGGATTGTTTGCCTGGCGGTTAACGCTGCCTAGCTGACGAAAAGACGACCAAACTGTAG-----ATTCCCTTAGTAATGGCG Megacyclops_viridis_viridis_ TGCCAGCTAGCGATCCGCGGGTGTTTTTTACGTAGGCTCCGCGGGAAGCTTCCGGGAAACCAAAGCCTTTGGGTTCCGGGGGAAGTATGGTTGCAAAGCTGAAACTTAAAGAAATTGACGGAAAGGCGTGGAGCTTGCGGCTTAATTTGACTCAACACTGGAAATCTCACCAGGCCCGGACACGTTTAGGATTGACAGATTGAGAGCTCTTTCTCGATTC-GTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGTGATTTGTCTGGTTAATTCCGATAACGAACGAGACTCCTTCCT-TTAACTAGCGGCGGGGTCGCGCCTGCCCCGCCGATTCTTAGAGGGACTGGCGGCGTCTAGCCGCACGAGATGGAGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCTGCACGCGTGTTACACTGAAGGGATCAGCGTGTCCCTGGCCGAGAGGCCCGTAACCCGCTGAACCCCCTTCGTGGTAGGGATCGGAGCTTGCAATTATTCTCCGTGAACCAGGAATGCCTCGTAAGCGCAAGTCATAAGCTTGCGTTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGAACGTCCAAGTGAGGTATTTGGACTGGGCCTGTGCGGGTTTGCGCCTGCGCTGTTGCGGGAAGACTCCCAAACTTGAGC--TGATGCCCTTAGTAATGGCG Mesocyclops_edax ---------------------------------------------------------------------------------------------------------------------------AGGCGTGGAACTTGCGGCTTAATTTGACTCAACACTGGAAATCTCACCAGGCCCGGACACCGGAAGGATTGACAGATTGAGAGCTCTTTCTCGATTCGGTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGTGATTTGTCTGGTTAATTCCGATAACGAACGAGACTCCGTCCTGCTAACTAGTCGTGACGTCACTCTTGCGTCTCGAATTCTTAGAGGGACTGGCGGCATCTAGCCGCACGAGATGGAGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCTGCACGCGTGTTACACTGAAGGGATCAGCGTGTCCCTGGCCGAGAGGTCCGTAACCCGCTGAACCCCCTTCGTGGTAGGGATCGGAGCTTGCAATTATTCTCCGTGAACCAGGAATGCCCAGTAAGCGCAAGTCATAAGCTTGCGTTGATTACGTCCCTGCCGTTTGTACACACCGCCCGTCGCTACTACCGATTGAACGTTTTAGTGAGGTATTTGGACTGGACCTCAGTCGGTTCGCGCCGACTGTGTCGCGGGAAGACTCCCAAACTTGAGC-----------TCGGAATG--- Mesocyclops_longisetus_longisetus ---------------------------------------------------------------------------------------------------------------------------AGGCGTGGAACTTGCGGCTTAATTTGACTCAACACTGGAAATCTCACCAGGCCCGGACACCGGAAGGATTGACAGATTGAGAGCTCTTTCTCGATTCGGTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGTGATTTGTCTGGTTAATTCCGATAACGAACGAGACTCCGTCCTGCTAACTAGTCGAGACGTCACTCTTGCGTTTCGAATTCTTAGAGGGACTGGCGGCATCTAGCCGCACGAGATGGAGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCTGCACGCGTGTTACACTGAAGGGATCAGCGTGTCCCTGGCCGAGAGGTCCGTAACCCGCTGAACCCCCTTCGTGGTAGGGATCGGAGCTTGCAATTATTCTCCGTGAACCAGGAATGCCCAGTAAGCGCAAGTCATAAGCTTGCGTTGATTACGTCCCTGCCGTTTGTACACACCGCCCGTCGCTACTACCGATTGAACGTTTTAGTGAGGTATTTGGACTGGACCTCAGCCGGTTCGCGCCGGCTGTGCTGCGGGAAGACTCCCAAACTTGAGC-----------TCGGAATG--- Osphranticum_labronectum --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pseudocalanus_acuspes -----------------------------------------------------------------------------------------------------------------------------------------CGGATCACTCTGCCTGCCTGGCGGGAAGACGACCAAACTGTTGCATTTAGAGGA-------AGTAAAAGTCGTAACAAGGTTCCGTAGGTGAACCTGAAGGATCATTATCGGTTGCTCAC---ACTTGTGTGTTCAATACGGTTAACCCTCGGGAAT-TGACTTGCCTCACGGCT--TGTTTCTCCTTGGAGTGTCGGCT-----------CTGCCGGTGCTCGAACGTTCCTGCTTGAC--------GGTCTGATCTCATGTCAGCTGTCTGAG-----------------------------------------CCGGGATGGCCCTGAGGTACCGTACCCCTTTCCTCCTAGTGGTCGGAGTTGTGGGATGTTCCAAACGGTTCAAAGACTCCCG------------CCTCAGCCCGGGTTTGTGATCTCCCCCCTGTTGGGATGTGCAGCCAA-------------------------------CCTTTGTTTTGTTCGCCTCT------------------------------------------------------------------ Pseudocalanus_elongatus TGCCAGCTAGCGATCTGCCGACGTTTTTTTTGTAGACTCGGCAGGAAGCTTCCGGGAAACCAAAGCATTTGGGTTCCAGGGGAAGTATGGTTGCAAAGCTGAAACTTAAAGGAATTGACGGAAAGGAGTGGAGCCTGTGGCTTAATTTGACTCAACACGGGAAATCTCACCAGGCCCGGACACTGGAAGGATTGACAGATTGATAGCTCTTTCTTGATTCGGTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGTGATTTGTCTGGTTAATTCCGATAACGAACGAGACTCTGTCCTGCTAAATAGTGTCCGCCTCTCTTTTGGGCGGACAATTCTTAGAGGGACTGGCGACTCTTAGTCGCACGAGATTGAGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACACGCGCTACACTGAATAGATCAACGTGTCCCTTTCCGAGAGGAACGTAAACCGCTGAACCCTATTCGTGGTAGGGATCGGGGCTTGCAATTGTTCCCCGTAAACCAGGAATTCCTAGTAGGCGCAAGTCATAAGCTTGCGTCGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGAATGTTTTAGTGAGGTCCTCGGACTGTTTGGTAGGCGGATCACTCTGCCTGCCTGGCGGGAAGACGACCAAACTGTAGC---------------------- Pseudocalanus_minutus -----------------------------------------------------------------------------------------------------------------------------------------CGGATCACTCTGCCTGCCTGGCGGGAAGACGACCAAACTGTAGCGTTTAGAGGA-------AGTAAAAGTCGTAACAAGGTTCCGTAGGTGAACCTGAAGGATCATTATCGGTTGCTCAC---ACTTGTGTGTTCAATACGGTTAACCCTCGGGAA-GTGACTTGCCTCACGGCT--TGTTTCTCCTTGGAGTGTCGGCT-----------CTGCCGGTGCTCGAACGTTCCTGCTTGAC--------GGTCTGATCTCATGTCAGCTGTCTGAG-----------------------------------------CCGGGATGGCCCTGAGGTACCGTACCCCTTTCCTCCTAGTGGTCGGAGTTGTGGGATGTTCCCAACGGTTCAAAGACTCCCG------------CCTCAGCCCGGGTTTGTGATCTCCCCCCTGTTGGGATGTGCAGCCAA-------------------------------CCTTTGTTTTGCTCGTCTCT----------------------------------------------TGATTCCCTTAGTAATGGCG Pseudocalanus_moultoni TGCCAGCTAGCGATCTGCCGACGTTTTTTTTGTAGACTCGGCAGGAAGCTTCCGGGAAACCAAAGCATTTGGGTTCCAGGGGAAGTATGGTTGCAAAGCTGAAACTTAAAGGAATTGACGGAAAGGAGTGGAGCCTGTGGCTTAATTTGACTCAACACGGGAAATCTCACCAGGCCCGGACACTGGAAGGATTGACAGATTGATAGCTCTTTCTTGATTCGGTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGTGATTTGTCTGGTTAATTCCGATAACGAACGAGACTCTGTCCTGCTAAATAGTGTCCGCCTCTCTTTTGGGCGGACAATTCTTAGAGGGACTGGCGACTCTTAGTCGCACGAGATTGAGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACACGCGCTACACTGAATAGATCAACGTGTCCCTTTCCGAGAGGAACGTAAACCGCTGAACCCTATTCGTGGTAGGGATCGGGGCTTGCAATTGTTCCCCGTAAACCAGGAATTCCTAGTAGGCGCAAGTCATAAGCTTGCGTCGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGAACGTTTTAGTGAGGTCCTCGGACTGTTTGGTAGGCGGATCACTCTGCCTGCCTGGCGGGAAGACGACCAAACTGTAGC---------------------- Pseudocalanus_newmani -----------------------------------------------------------------------------------------------------------------------------------------CGGATCACTCTGCCTGCCTGGTGGGAAGACGACCAAACTGTTGCATTTAGAGGA-------AGTAAAAGTCGTAACAAGGTTCCGTAGGTGAACCTGAAGGATCATTATCGGTTGCTCAC---ACTTGTGTGTTCAATACGGTTAACCCTCGGGAAG-TGACTTGCCTCACGGCT--TGTTTCTCCTTGGAG--------GCTT-----GTCTGCCGGTGCTCGAACGTTCCTGCTTGAC--------GGTCTGATCTCATGTCAGCTG-TCTGAGCCG----------------------------------------GGATGGCCCTGAGGTACCGTACCCCTTTCCTCCTAGTGGTCGGAGTTGTGGGATGTTCCCAACGGTTCAAAGACTCCCG------------CCTCAGCCCGGGTTTGTGATCTCCCCCTTGTTGGGATGTGCAGCCAACCTTTGC----------------------------------------------------TTTGCTCGTCTCT--------------------------------------------- Temora_longicornis TGCCAGCTAGCGATCTGACGGCGTTTTATTTTT-GACTTGTCAGGGAGCTTCCGGGAAACCAAAGCTTGTGGGTTCCAGGGGAAGTATGGTTGCAAAGCTGAAACTTAAAGTAATTGACGGAAAGGAGTGGAGCCTGTGGCTTAATTTGACTCAACACGGGAAATCTCACCAGGCCCGGACACCAGAAGGATTGACAGATTGATAGCTCTTTCTTGATTTGGTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGTGATTTGTCTGGTTAATTCCGATAACGAACGAGACTCTGTCCTGCTAAATAGATGCAGCCT-TTTTTTGGGTTGTATTTTCTTAGAGGGACTGGCGATTATTAGTCGCACGAGATTGAGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACACGCGCTACACTGAATTGATCAGCTAGTCCCTTTCCGAGAGGAACGTAAACTGTTGAACCCAATTCGTGGTAGGGATCGGAGCTTGCAATTGTTCTCCGTGAACCAGGAATTCCCAGTAGGCGCAGGTCATAAGCCTGCGTCGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGAGTGTTTTAGTGAGGTCCTCGGATTGCTTTCCTGGCGGTTAACGCTGCCTAGTTGGCGAAAAGACGACCAAACTGTAGC--TGATTCCCTTAGTAATGGCG Thermocyclops_crassus ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCTGGC-------------------GACTCACTGCTGCGAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGATGCCCTTAGTAATGGCG Tigriopus_californicus TGCCAGCTAGCGATCCGCAGGCGTTTTATTTGTAGGCCCTGCGGGAAGCTTCCGAGAAATCAAAGCTTTTGGGTTCCGGGGGAAGTATGGTTGCAAAGCTGAAACTTAAAGTAATTGACGGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTTCACCCGCCAATAGGG Crangonyx_pseudogracilis -----------------------------------------------------------------------------------------------------------------------------TGGTCGCGTAG----------------------------CCGGGCTTCGGCTCGGTTGCAAGGCCAGCT---------------ACTCCTT-------TGAGCAC-----------------------------------------------GGACTTTCAAGG------------------------GTGTTGCCGTATGCGGAACCGCCCACCACGTC-----------------GTTGCGTGGTC----------ACCCACA---------------GGCTCGACTGTCGATCGCGTGTTCACCTT---CGCAGAGATGTGTT-------------------------------------------------GGTGTCTCGCCTCCCTTCTAGG-----AGACGGGACGACACTAGCGGCGAGAGTGTAATT--------------GAACCGGACGGCGAC------------------------------------------------------------------------------TGAGATAAACCTGGTATGATCCACTTGCGACGAGAC-- Acartia_hudsonica --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Aglaodiaptomus_leptopus --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Boeckella_gracilis -------------------------TCGCAAGTCATCTCGGCTTTGGAAATGTGACGTTTGGGAGGGTCGCC-CGACGATCAGTCCAAGTCCAACTTGACAGTGGCCACAGCCCATAGAGGGTGATAGGCCCGTAAGGCGGTTGTCTGGCTGTGCTGACCTCTCTCTAGAGTCGGATTGCTTGGGAGTGCAGTCCAAAGTGCGAGGTAAACTCCTCGTAAGGCTAAATATAACCCCGAGACCGATAGCAAACAAGTACAGTGATGGAAAATTGAAAAGAACTTTGAAGAGAGAGTT-AAGAGTACGTGAAACTGTGTGGTGGTAAACGGAGGCGTTCTCGAAGTGGGGGACTCAAGCTTGGTGGCTGGCAGCCGCGCTCCTTGATCAGCAATGACTGGGTGTGTAGGCTTGCCTCCCGGCCGCACTTTCCCCGTTGACGGCAGGAACTGTTGGGACCGGACCAAAGGCCTGATGAAGTTGCTTGCCCTGCTTGTAGTCCCGGTGTCCTGGCTTCGGGCCCGACGGG-GTATGAGTGGACTTGTATAGCAAGGTTGCGGTTCACATCTCTCTGCCGAGTAGGTCGGCGGCGCCTCCGACCCGTCTTGAAACACGGACCAAACCTAGCGGCGCAGTGAAAGCAAAGTTGGGAATACGCAGGAAAGATGGTGAACTATGCCTGGCCAGGTTGAAGTCAGGGGAAAC-- Calanus_finmarchicus AAAACGGGAACAGGGCATCGCGGAACTGCAGGTCATCTTGGCCTCGGGAATGTCGCGTTCGGGAGAGTCTTCTCGACGGCCAGTCAAAGTCCAACTTGACAGTGGCCACTGCCCATAGAGGGTGATAGGCCCGTAAGGCGGCTGTCCGTTTTCGCTGACTTTTCCCTAGAGTCGGGTTGCTTGGGAGTGCAGCCCAAAGTGCGAGGTAAACTCCTCGTAACCCTAAATATGACCCCGAGACCGATAGCAAACAAGTACGGTGACGGAAGATTGAAAAGAACTTTGAAGAGAGAGTTCAATAGTACGTGAAACTGTGTGGTGGTAAACGGAGGGGTTCTCGAAGTTGGGAACTCAGCCTTGGTGTCGCGTGGCCGTTGTATCTGATCAGCAATGACAGTGCAGCTCGACGTGTCTCTCGGGTGCATTTCCCCCGTTTACGGCAGGAACTGTTTGGAGCGCACCGAAGGCCTGGTGAAGTTGTTGGTTCTGCTGGCAGCCTGGGTGTCCTGGCTTCGCACCAGACAGGTACGTGAGAGGACTCGTATAGCGAGGTTGCGGTTCTCATCTCTCTGCCGAGTAGGTCGGCGGCCCCTCCGACCCGTCTTGAAACACGGACC---------------------------------------------------------------------------------------- Calanus_glacialis AAAACGGGAACAGGGCATCGCGGAACTGCAGGTCATCTTGGCCTCGGGAATGTCGCGTTCGGGAGAGTCTTCTCGACGGCCAGTCAAAGTCCAACTTGACAGTGGCCACTGCCCATAGAGGGTGATAGGCCCGTAAGGCGGCTGTCCGTTTTCGCTGACTTTTCCCTAGAGTCGGGTTGCTTGGGAGTGCAGCCCAAAGTGCGAGGTAAACTCCTCGTAACCCTAAATATGACCCCGAGACCGATAGCAAACAAGTACGGTGACGGAAGATTGAAAAGAACTTTGAAGAGAGAGTTCAATAGTACGTGAAACTGTGTGGTGGTAAACGGAGGGGTTCTCGAAGTTGGGAACTCAGCCTTGGTGTCGCGTGGCCGTTGTATCTGATCAGCAATGACAGTGCAGCTCGACGTGTCTCTCGGGTGCATTTCCCCCGTTTACGGCAGGAACTGTTTGGAGCGCACCGAAGGCCTGGTGAAGTTGTTGGTTCTGCTAGCAGCCTGGGTGTCCTGGCTTCGCACCAGACAGGTACGTGAGAGGACTCGTATAGCGAGGTTGCGGTC-TCATCTCTCTGCCGAGTAGGTCGGCGGCCCCTCCGACCCGTCTTGAAACACGGACC---------------------------------------------------------------------------------------- Calanus_helgolandicus ATAACGGGAACAGGGCATCGC-GGACTGCAGGTCATCTTGGCCTCGGGAATGTCGCGTTCGGGAGAGTCTTCTCGACGGCCAGTCAAAGTCCAACTTGACAGTGGCCACTGCCCATAGAGGGTGATAGGCCCGTAAGGCGGCTGTCCGTTTTCGCTGACTTTTCCCTAGAGTCGGGTTGCTTGGGAGTGCAGCCCAAAGTGCGAGGTAAACTCCTCGTAACCCTAAATATGACCCCGAGACCGATAGCAAACAAGTACGGTGACGGAAGATTGAAAAGAACTTTGAAGAGAGAGTTCAATAGTACGTGAAACTGTGTGGTGGTAAACGCAGGGGTTCTCGAAGTTGGGAACTCAGCCTTGGTGTCGCGTGGCCGTTGTATCTGATCAGCAATGACAGTGCGGCTCGACGTGTCTCTCGGGTGCATTTCCCCCGTTTACGGCAGGAACTGTTTGGAGCGCACCGAAGGCCTGGTGAAGTTGTTGGTTCTGCCGGCAGCCTGGGTGTCCTGGCTTCGCACCAGACAGGTACGTGAGAGGACTCGTATAGCGAGGTTGCGGTTCTCATCTCTCTGCCGAGTAGGTCGGCGGCCCCTGCGACCCGTCTTGAAACACGGACC---------------------------------------------------------------------------------------- Calanus_hyperboreus AAAACGGGAACAGGGCATCGCGGAACTGCAGGTCATCTTGGCCTCGGGAATGTCGCGTTCGGGAGAGTCTTCTCGACGGCCAGTCAAAGTCCAACTTGACAGTGGCCACTGCCCATAGAGGGTGATAGGCCCGTAAGGCGGCTGTCCGTTTTCGCTGACTTTTCCCTAGAGTCGGGTTGCTTGGGAGTGCAGCCCAAAGTGTGAGGTAAACTCCTCATAACCCTAAATATGACCCCGAGACCGATAGCAAACAAGTACGGTGACGGAAGATTGAAAAGAACTTTGAAGAGAGAGTTCAATAGTACGTGAAACTGTGTGGTGGTAAACGGAGGGGTTCTCGAAGTTGGGAACTCAGCCTTGGTGATTCGTGGCCGTTGTATCTGATCAGCAATGACTGTGCAGCTCGGCGTTTCTCTCGGGTGCATTTCCCCCGTTTACGGCAGGAACTGTTTGGAGCGCACCAAAGGCCTGGTGAAGTTGTTGGTTCTGCCGGCAGCCTGGGTGTCCTGGCTTCGCACCAGACAGGTACGTGAGAGGACTCGTATAGCGAGGTTGCGGTTCTCATCTCTCTGCCGAGTAGGTCGGCGGCCCCTCCGACCCGTCTTGAAACACGGACC---------------------------------------------------------------------------------------- Calanus_marshallae AAAACGGGAACAGGGCATCGCGGAACTGCAGGTCATCTTGGCCTCGGGAATGTCGCGTTCGGGAGAGTCTTCTCGACGGCCAGTCAAAGTCCAACTTGACAGTGGCCACTGCCCATAGAGGGTGATAGGCCCGTAAGGCGGCTGTCCGTTTTCGCTGACTTTTCCCTAGAGTCGGGTTGCTTGGGAGTGCAGCCCAAAGTGCGAGGTAAACTCCTCGTAACCCTAAATATGACCCCGAGACCGATAGCAAACAAGTACGGTGACGGAAGATTGAAAAGAACTTTGAAGAGAGAGTTCAATAGTACGTGAAACTGTGTGGTGGTAAACGGAGGGGTTCTCGAAGTTGGGAACTCAGCCTTGGTGTCGCGTGGCCGTTGTATCTGATCAGCAATGACAGTGCAGCTCGACGTGTCTCTCGGGTGCATTTCCCCCGTTTACGGCAGGAACTGTTTGGAGCGCACCGAAGGCCTGGTGAAGTTGTTGGTTCTGCTAGCAGCCTGGGTGTCCTGGCTTCGCACCAGACAGGTACGTGAGAGGACTCGTATAGCGAGGTTGCGGTTCTCATCTCTCTGCCGAGTAGGTCGGCGGCCCCTCCGACCCGTCTTGAAACACGGACC---------------------------------------------------------------------------------------- Calanus_pacificus --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Calanus_sinicus ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGACCGATAGCAAACAAGTACGGTGACGGAAGATTGAAAAGAACTTTGAAGAGAGAGTTCAATAGTACGTGAAACTGTGTGGTGGTAAACGGAGGGGTTCTCGAAGTTGGGAACTCAGCCTTGGTGTCGCGTGGCCGTCGTATCCGATCAGCAATGACGGTGCGGCTCGACGTGTCTCTCGGGTGCATTTCCCCCGTTTACGGCAGGAACTGTTTGGAGCGCACCGAAGGCCTGGTGAAGTTGTTGGTTCTGCTGGCAGCCTGGGTGTCCTGGCTTCGCACCAGACAGGTACGTGAGAGGACTCGTATAGCGAGGTTGCGGTTCTCATCTCTCTGCCGAGTAGGTCGGCGGCCCCTCCGACCCGTCTTGAAACACGGAC----------------------------------------------------------------------------------------- Cyclops_scutifer -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACCCAAGGGCGTAGTGAAAGCGAAGTGCAGAGCAGCAAGGAAAGATGGTGAACTATGCCTGGCCAGGTTGAAGTCAGGGGAAAC-- Dioithona_oculata AAAACGGGCAGAGCCCAGCAGCGAACTCCCGGACATTTCGGTCGTGGGAATGTGGTGTTTGGGAGAGCCTCATCGTCGAGGCGTTCAAGTACACCTTGACTGGGAACACGGCCCGTAGAGGGTGATAGGCCCGTGAGACCCTTGACTTGCTGCGATGGCTTTTCCCTAGAGTCGAGTTGTTTGGGAGTACAGCTCAAAATGCGTGGTAAACTCCACGTAAGGCTAAATATGACCCCGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGCACTTTGAAGAGAGAGTTCAATAGTACGTGAAACTGTATAGTAGTAAACGGAGGGGCTCTCGAAATCGGCGGTTCAGGGTGACGGCGGGGTGGCCGGGGTTTGGGATCCGCAAGGACCCTGCCTCTTGGCCCTGTCGGCGCCTGCACTTCGCTACCTCACGCGACGAACCGTTCCTTTCGGACCGAGGGCGTGGTGAAGTTTGTTGGCCTAGCAAG--CCCTGCGTTTCTGGCTCTGGAGGGGACGGGTATTTGAGTGGTCTCGTATAGCGAGATCACGGGCCGCATCTCTGTCGCGAGTAGGTCGGTGGCCCTTTCGACCCGTCTTGAAACACGGACCAAACCCAAAGGCGTAGTGAAAGCAAAGTGCGGAGCATCAAGGAAAGATGGTGAACTATGCCTGGCCAGGTTGAAGTCAGGGGAAAC-- Eodiaptomus_wolterecki_wolterecki --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Eurytemora_affinis AGAACGGGAGAAGCCCATCGCTGAACCTCCAGTCCTGCGGGCTGTGGGAATGTAGCGTATAGAAGTGTTGTGCCGTCTGCCTGTT-AAGTCCAACTTGACAGTGGTAATATCCCGTAGAGGGTGATAGGCCCGTAAGTGGGTAGATCGGACTTGCTAACATCTTCTGAGAGTAGGATTGCTTGAAAGTGCAGTCTGAAGCGCGAGGTAAACTCCTCGTAAGGCTAAATATCACCCCGAGACCGATAGCTAACAAGTACAGTGATGGAAACTTGAAAAGAACTTTGAAGAGAGAGTT-AAAAGTATGTGAAACCGTTTGGATGTAAACGCAGCCTTCCGCGAATTTGCGGATCCAGCTTGGGCGCGGGGCGGCCCCTAGTTCGGAGCAGGGATGCCCGGCTGGGGCGACTCGTGTCCCGGGTGAAGCTCTGTCGGTTACGGTTGGAACTGTTGGGACCGGATCGAAGGCCCGGGGGACTCCATACCATTGGCAGGGGCCCCGGTGTCCTGACTTCGGACCCGACAGGCATATGGGCG--TCTGTTTAAGAGAGCCGTGGGCGCCCGTTCCCTTCCGAGTAGGTC-GTGAAGGCTGCGACCCGTCTTGAAACACGGACCAAACCCGTAGGCGCAGTGAAAGCAAAGTTGGGAGTAGGTAGGAAAGATGGTGAACTATGCCTGGCCAGGTTGAAGTCAGGAAAATC-- Limnocalanus_macrurus_macrurus AAAACGGGAACAGCCCATCGCCGAACTGCAGGTCATCCAGGCCTTGGGAATGTGGCGTTTGGAAGGGTCTCTTCGGACGCCTGTCAAAGTCCAACTTGACAGTGGCCACAGCCCATAGAGGGTGATAGGCCCGTAAGGCGGTTGTCCGGCTTTGCTGACCTCTTCCCAGAGTCGGGTAGCTTGATAGTGCTGCCCAAAGTGCGAGGTAAACTCCTCGTAAGGCTAAATATGACCCCAAGACCGATAGAAAACAAGTACAGTGATGGAAATTTGAAAAGAACTTTGAAGAGAGAGTT-AAGAGTACGTGAAACTGTGTGGCAGTAAACGAAGCCTTCCTCGAAGTTGTGAACCCAGCCTTAGGGCCGGGCAGCCTCGTCGTCCGATCAGCAATGACTGGCGGCGGCTGCTTGGTCCGCGGGTGCATCTTCACCGTTTACGGTGGGAACTGTTGGGACTGGACCAAAGGCCTGATGAAGTTCTCGCCTC-GGCGTTAGTCCCGGTGTCCTGGCTCCGGACCCGACAGGCCACGTGGCCAACTTGTACAGCAAGGTTGCGGTTGGCCATTCTCCACCGAGTAGGTCGGCGGAGGCTTCGACCCGTCTTGAAACACGGACCAAACCCGCAGGCGCAGTGAAAGCAAA-------------------------------------------------------------- Megacyclops_viridis_viridis_ AAAACGGGCAGAGCCCAGCGCCGAACCGCCGGCCCTGTGGGTCGCGGGAATGTGGTGTTTGGGGAAGCCTCCTCGTCGGCCAGTCCAAGTCCACCTTGACTGGGGCCACGGCCCGTAGAGGGTGATAGGCCCGTAAGACGGCTGCCGCGTTGTGCCGGCTTTCCCCTAGAGTCGAGTTGCTTGGGAGTGCAGCTCAAAGTGCGTGGTAAACTCCACGTAAGGCTAAATATGACCCCGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAAGAGAGAGTTCAAGAGTACGTCAAACTGTGCGTCGGTAAACGGAGGGGCTCTCGAAGCGCGAGATTCAGGCCGACGGGCGGGCGGCCGGCGTGCGCGATCCGCGAGGACGCCTCGCCTTGGCTCTCTTGGAGGCTGCACTTCTCGGGTGGACGCGTCGAACCGCTGGTCGGGGAACGTCGGGCTGGTGAAGTTCCGGGTCCTCTCGGAG-CCCCGGTCTCTTGTCTCTCCCTCCGGCGGGTACCTGAGTCGGCTTGTATAGCGAGCGGGCGGCCGGCATCTCTGTCGCGAGTAGGTCGGTGGCCCCTCCGACCCGTCTTGAAACACGGACCAAACCCAAGGGCGCAGTGAAAGCGGAGTGCAGAGCAGCAAGGAAAGATGGTGAACTATGCCTGGCCAGGTTGAAGCCAGGGGAAAC-- Mesocyclops_edax ---------------------TGAACTGCAGGACATATGAGCATCG--------------------------------------------ACACTTTGAACG---------CATATTGCGGGCGCTGGGTCCA------------------CCGCCCATTCTGGCTCAGGGTCGGTTT---------AACATCT----------------CTCCCCG------------------------------------------------------------GGGTTCT----------------CCCCCGGGGCACTGGG------------------CTCTCGCCTCG-----CCTTCCCGGGGTGCGGCGTGGCT-----------------------------------TCAAGTTGCGAGCTCGTCTGTCT--CCGACGGCTTTGACTCTTGGGATACCT------------------------------------CTCCCGGGTCTCGCCTCT------GGCCGGCCTGCGAGCGCTGGCGTTC--------------------CCCCCTGTCGGGGACGCCGGCGACCCTCCTTACT--TCCCTGAGAGCAGGCAATATTAATAAGCGGAGGAAAAGAAAAGCGCGGAATGTGGTGGGGAGCCTCCTCGCGACGTTTCGGCCAGTCAAAGTCCACCTTGAC-- Mesocyclops_longisetus_longisetus ---------------------TGAACTGCAGGACATATGAGCATCG--------------------------------------------ACACTTTGAACG---------CATATTGCGGGCGCTGGGTCCA------------------CCGCCCATTCTGGCTCAGGGTCGGTTT---------CTCATCC----------------CTCCCC-------------------------------------------------------------GGATTTT-------------------CTGGGGCATTGGG------------------CTCTCGCCTCT--------------------GCGTGGCT-----------------------------------TCAAGTTCTGGGCTTGTCTCTGCCTTGGACGGCTACGACTCTTGGGATTCTCT-----------------------------------CCCGGGTCTGCTGCCTCCCCCTCTGGTGGCT------------------------TGCGCCGCTACCCTCCTTCTCCTGGGTGG--CGGCAACCC-TCTGAATTTTCCCTGAGAGCAGGCAATATTAATAAGCGGAGGAAAAGAAAAGCGTGGAATGTGGTGGGGAGCCTCCTCGCGACGCGTTGGCCGGTCCAAGTCCACCTTGAC-- Osphranticum_labronectum ------------------------------------------TTCGGGAATGTGACGTTTGAGAGGGTCTCTTCGAACACCCGTCAAAGTCCAACTTGACAGTGGCCACAGCCCATAGAGGGTGCTAGGCCCGTAAGGTGGGTGTTCGGCTTTGCTGACCTCTCTCCAGAGTCGGGTTGCTTGAGAGTGCAGCCCAAAGTGCGAGGTAAACTCCTCGTAAGGCTAAATATGACCCCAAGACCGATAGCAAACAAGTACAGTGATGGAAATTTGAAAAGGACTTTGAAGAGAGAGTT-AACAGTACGTGAAACTGTATGGCAGTAAACGAAGCCTTCCTCGAAGTCGAGGACTCAACTTTGGACGTTGGCGGCCTCGCGGCGGGATCAGCAATGAACCGCCGCGGCGGCTGGCGTCCTGGGTGCATTTCCTCCCGTTACGGTAGGAACCATTGGGACCGGACCGAAGGCATGATGAAGTTTTCGCTTC-GGCGTCAGTCCCGTTGTCCTGGCTCTGGACCCGATGGGCCACACGGGGGACTTGTATAGCAAGGTCACCGTTCCCCTTTCTCTACCGAGTAGGTCGGCGGAGGCTTCGACCCGTCTTGAAACACGGACCAAACCCTGAGGCGCAGTGAAAGCAAAGTAGGGAGTACGCAGGAAAGATGGTGAACTATGCCTGGCCAAGTTGAAGCCAGGAGAAAT-- Pseudocalanus_acuspes --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pseudocalanus_elongatus ----------------------------------------------------------------------------------------------------------------CCAAGGAGTCTAACATGTATGCGAGCCA-------------------------------TTGGGTT------GACTAAACCTAGAGGCGCAGTGAAAGC-------------------------------------------------------------------------AAAGA------------------------------------------------------------------------------GTAGCT-------------------------------CTGCTCGA-----------------------------------------------------------------------------------------------------------------------GGGACGATCCGCAAGGCGCA--------------------------------------------------------------------------------------------GTTGGGTGTACACAGGAAAGATGGTGAACTATGCCTGGCCAGGTTGAAGTCAGGGGAAAC-- Pseudocalanus_minutus AAAACGGGAACAGCCCATCGCGTAACTGCAGGTCATCTTGGCCTCGGGAATGTCGCGTTYGGGAGAGTCTCATCGACGGCCAGTCAAAGTCCAACTTGACAGTGGCCACTGCCCATAGAGGGTGATAGGCCCGTAAGGCGGCCGTCCGTTTCCGCCGACTTTTCCCTAGAGTCGGGTTGCTTGGGAGTGCAGCCCAAAGTGCGAGGTAAACTCCTCGTAAGGCTAAATATGACCCCGAGACCGATAGCAAACAAGTACCGTGAGGGAAAATTGAAAAGAACTTTGAAGAGAGAGTTCAATAGTACGTGAAACTGTGTGGTGGTAAACGGAGGGGTTCTCGAAGTTTGGAACTCAACCTTGGTGTCGGGCGGTCGGTGTATCTGATCAGCAATGACAGTTCGCTTCGGCTTGGCTCCCGGGTGCATTTTCCAAGTTTACGGCAGGAACCGTTTGGCTCGGACCGAAGGCCTGGCGAAGTTGTAGGTATTGCTTGCAGCCCGGGTGTCCTGGCTCTGCGCTCGACGGGTACGTGAGAGGACTCGTATAGCGAGGTTGCGGTTCTCATCTCTCTGCCGAGTAGGTCGGCGGCCCCTCCGACCCGTCTTGAAACACGGACC---------------------------------------------------------------------------------------- Pseudocalanus_moultoni --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pseudocalanus_newmani --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Temora_longicornis AAAACGGGAACAGCCCATCGCAGAACTGCTGGCCATACAGGTCACGGGAATGTTGCGTTTGGAAGGGTCTCTTCAGACGCCTGTTAAAGTCCAACTTGACAGTGGCCACAGCCCATAGAGGGTGCTAGGCCCGTAAGGTGGGCGTCTGACTTTGCTGACTCTTCCCC-GAGTCGGATAGCTTGAGAGTGCTGTCCAAAGTGCGAGGTAAACTCCTCGTAAGGCTAAATATGACCCCAAGACCGATAGCAAACAAGTACAGTGATGGAAATTTGAAAAGAACTTTGAAGAGAGAGTT-AAGAGTACGTGAAACTGTATGGCAGTAAACACAGCCTTCCTCGAAGTTGGAGACCCAACCTAGGGGTGGGCCAGCCCTGGCGCTTGATCAGCAATGACGG-GCGTCGTGGCTTG-CCCACGGGTGCATCTCTTCCGTTTACGGTAGGAACTGTTGGGGCTGGACCTAGGGCCTGATGAAGTTTTCGCTCC-GGCGTCAGACCCGGTGTCCCGGCTCCGGACCCGACAGGCATAGTGGCCGACTTGTACAGCAAGGTTGCGGTTGGCCCTTCCCTACCGAGTAGGTCGGCGGAGGCTGTGACCCGTCTTGAAC------------------------------------------------------------------------------------------------ Thermocyclops_crassus AAAACGGGCAGAGCCCAGCACCGAACCCCCGGGC--TCTGGTCGCGGGAATGTGGTGTTTGGGGGAGCCTCCTCTCCGGTCCGTCCAAGTCCCCCTTGACTGGGGCCACGGCCCGTAGAGGGTGATAGGCCCGTAAGACGATCGGAACGTTGTGCCCGTTTTCCCCTAGAGTCGAGTTGCTTGGGAGTGCAGCTCAAAGTGCGTGGTAAACTCCACGTAAGGCTAAATATGACCCCGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAAGAGAGAGTTCAAGAGTACGTGAAACTGTGTAGTGGTAAACGGAGGGGCTCTCGAAGCTGGAGATTCAGGTTGACTTGTGGGCGGCCGGTGCTTCCGATCCGCAAGGACGGCGTGCCTCTGCCTGCTCGGCGGCTGCACTTCTCCGGTTTGCGCGACGAACCGCTGCCTGAGGAACGTGGCGTCGGTGAAGTTTGTTGCCGCGTGGCAAGCCCCGGCGTTCTGTCTCCTCGGTCGGCGGGTACTGGAGTCGGCTTGTATAGCAAGGGCGCGGCCGGCATCTCCGTCGCGAGTAGGTCGGTGACCCCTCCGACCCGTCTTGAAACACGGACCAAACCCAAGGGCGCAGTGAAAGCGAAGTGCGGAGCAGCAAGGAAAGATGGTGAACTATGCCTGGCCAGGTTGAAGTCAGGGGAAAC-- Tigriopus_californicus AAGCTGGGTTTAGACCGTCGTGAGA---CAGGTTAGTTTTACCCTAGATGACTCGTCGTTGCGATAGTAATCCT----------------TCAGTACGAGAGGAACCGCAGGTTCGGACATTTGGTATACGTATCGGCCGATCGGCCGGTGGTGCGAAGTACCATCC---GTGGGATTATGCCTGAACGCCTCT--------AAGGCAGAATCCC-----GTCTAGACACGGCAACGATACTGTTGGCCCATTTGCACGGGGAAGGATAGTCCTCACGGACTCCGAACAGGGAACC-----------GGCTCTTGGTAGAAGTGCCTTGAGCTCTCCTTATCATT----------CTTGGCAGAGTGGAGGCC------CCAAATCGTCTGTA-----------CGACTTATGTACCGGCCGGG---------GTCGTAAAAGGTAGAGCAACCACCACATTGCGATC----------------------------TTTTGAGACTCAGCCCTTTTGACTGGAAGATTTGT--------TCTTGTAGCTAG---------------------------------------------ACAAGTCTT---------------------------------------------------------------------------------------------------- ; CHARSET COI = 1 -711; CHARSET 16S = 712 -1255; CHARSET 18S = 1256 -2113; CHARSET 28S = 2114 -2838; outgroup Crangonyx_pseudogracilis; Delete 2 40 29 3 16 20 14 17 15 19 21 26; PARTITION loci = 4 : COI , 16S , 18S , 28S; set partition = loci; lset applyto = ( all ) nst = 6; unlink revmat = ( all ) shape = ( all ) pinvar = ( all ); prset applyto = ( all ) ratepr = variable; mcmc ngen = 250000000 samplefreq = 1000 printfreq = 10000 nchains = 4 savebrlens = yes; sump burnin = 62500; sumt burnin = 62500; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 2838; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 2838; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 2838; END; BEGIN TREES; Title 'Trees from "copepod_concat_6-5.nex.tre"'; ID 015f979fadec1; LINK Taxa = Taxa; TRANSLATE [0] n0 Crangonyx_pseudogracilis, [1] n1 Acartia_hudsonica, [2] n2 Aglaodiaptomus_leptopus, [3] n3 Boeckella_gracilis, [4] n4 Calanus_finmarchicus, [5] n5 Calanus_glacialis, [6] n6 Calanus_helgolandicus, [7] n7 Calanus_hyperboreus, [8] n8 Calanus_marshallae, [9] n9 Calanus_pacificus, [10] n10 Calanus_sinicus, [11] n11 Cyclops_scutifer, [12] n12 Dioithona_oculata, [13] n13 Eodiaptomus_wolterecki_wolterecki, [14] n14 Eurytemora_affinis, [15] n15 Limnocalanus_macrurus_macrurus, [16] n16 Megacyclops_viridis_viridis_, [17] n17 Mesocyclops_edax, [18] n18 Mesocyclops_longisetus_longisetus, [19] n19 Osphranticum_labronectum, [20] n20 Pseudocalanus_acuspes, [21] n21 Pseudocalanus_elongatus, [22] n22 Pseudocalanus_minutus, [23] n23 Pseudocalanus_moultoni, [24] n24 Pseudocalanus_newmani, [25] n25 Temora_longicornis, [26] n26 Thermocyclops_crassus, [27] n27 Tigriopus_californicus; TREE con_50_majrule = (n0:0.361053,n27:0.26419,(((((((n1:0.164142,n13:0.074278):0.029799,n14:0.102079):0.034646,((n15:0.066122,n25:0.082171):0.029135,n19:0.095936):0.014832):0.035675,n2:0.104237):0.011618,n3:0.081271):0.028546,(((((((n4:0.041873,(n5:0.010075,n8:0.007368):0.039133):0.011242,n9:0.074629):0.012292,n10:0.055537):0.008903,n6:0.040488):0.013359,n7:0.043967):0.031801,(n21:0.058822,n23:0.039269):0.051854):0.009823,((n20:0.040239,n24:0.054295):0.028421,n22:0.033263):0.171846):0.021327):0.040958,((n11:0.044601,(n17:0.031646,n18:0.052482):0.165543):0.019359,((n12:0.125231,n26:0.072711):0.021393,n16:0.085244):0.02907):0.050541):0.099111); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1510077648098; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 4297729617605214587; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 4295085829477607334; mqVersion 320; checksumv 0 3 456872532 null getNumChars 2838 numChars 2838 getNumTaxa 28 numTaxa 28 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 1060408.0 sumSquares -9.2233720368539228E18 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 821 716; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #4297729617605214587 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #4297729617605214587; getWindow; tell It; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 721 644; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #4297729617605214587 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 015f979fadec1; toggleUseWeights off; endTell; setAssignedID 1024.1510077349926.4068005309527390199; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 721 644; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #4295085829477607334 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 721 644; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;