#NEXUS
[written Wed Nov 08 15:46:34 EST 2017 by Mesquite  version 3.31 (build 859) at Bennu.fios-router.home/192.168.1.156]

BEGIN TAXA;
	TITLE Cowpea_bean_CCAATHAP5_Taxa;
	DIMENSIONS NTAX=19;
	TAXLABELS
		'Arabidopsis thaliana AT5G59870.1' 'Arabidopsis thaliana AT5G63470.2' 'Vigna unguiculata C35084688-augustus0.5' 'Vigna unguiculata scaffold12067-0.0' 'Vigna unguiculata C35009181-augustus0.1' 'Vigna unguiculata scaffold91373-0.1' 'Vigna unguiculata scaffold44525-0.1_ORF+1' 'Vigna unguiculata scaffold91651-0.2_ORF+1' 'Vigna unguiculata scaffold3280-processed0.1' 'Vigna unguiculata C35048311-processed0.1' 'Vigna unguiculata scaffold42511-augustus0.4' 'Phaseolus vulgaris Phvul.005G014300.2.p' 'Phaseolus vulgaris Phvul.006G093200.4.p' 'Phaseolus vulgaris Phvul.006G152400.1.p' 'Phaseolus vulgaris Phvul.006G152500.1.p' 'Phaseolus vulgaris Phvul.008G008900.1.p' 'Phaseolus vulgaris Phvul.009G166000.1.p' 'Phaseolus vulgaris Phvul.011G196500.1.p' 'Phaseolus vulgaris Phvul.008G204500.1.p' 
	;

END;


BEGIN CHARACTERS;
	TITLE  Cowpea_bean_CCAATHAP5_MAFFT;
	DIMENSIONS  NCHAR=291;
	FORMAT DATATYPE = Protein GAP = - MISSING = ?;
	MATRIX
	'Arabidopsis thaliana AT5G59870.1'           M---------------------------------------ESTGK-VKKAFGGRKPPGAPKTKSVSKSMKAGLQFPVGRITRFLKKGRYAQRLGGGAPVYMAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDEELGKLLSGVTIAHGG---------------------------------------------------------------------------------VLPNINSVLLPKKSATKPAE----EKATKSPVKSPKKA----------------
	'Arabidopsis thaliana AT5G63470.2'           MD-NNNNNNNQQPPVYPSAVTTVIPPPPSGSASIVTHHLLQQQQQQLQMFW-------TYQRQEIEQVNDFKNHLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREEIKEEE----------------DAASALGG------------------------------------GGMVAPAASGVPYYYPPMGQPAVPGGMMIGRPAMDPSGVYA------QPPSQAWQS--VWQNSADDVSYGSS
	'Vigna unguiculata C35084688-augustus0.5'    --------------------------------------------------------------------------FPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLEL-------NKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGG---------------------------------------------------------------------------------VLPNIHQTLLPKKVG----------KGKGEIG----------------------
	'Vigna unguiculata scaffold12067-0.0'        --------------------------------------------------------------------------DPVARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDREEEIFICNGTGTGFAI----------------------PY----------------------------------------------------------------------------------------------------------------------------------------
	'Vigna unguiculata C35009181-augustus0.1'    -------HQQQQ----------------------------QQMQQRLQGFW-------TNQYQEIEKVTDF---LPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLR-------NKRKTLQKNDIAAAITRTDIFDFLVDIVPEDYKDEVL-----------------ASMPRGT---------------------------------------------------VPVTAP---------------------------------------------------
	'Vigna unguiculata scaffold91373-0.1'        -------QYYPQ----------------------------NIQEGKLRSFW-------EKQLLDIEAAEAF---LPLARIRRIMKTDADVQMVSAETPMLMSKACEIFIQELTFR-------SNKSTVQPCDVAKVIMQNNAMQFLTEIVPNFCAGAQEGKLRSFWEKQLLDIEAEAFLPLAR---------------------------------------IRRMKTDADVQMVSAETP-----MLMSKAFIQELTFRS-NKSTVQPCDVAKVI--MQNNAMQFLTEIVP
	'Vigna unguiculata scaffold44525-0.1_ORF+1'  VAAGANQHHQQQ----------------------------QHQQQQLQMFW-------SNQMQEIDQTIDF---LPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLR-------NKRRTLQKNDIAAAISRNDVFDFLVDIIPKEEGLGIT----------------KATIPLVG------------------------------------------SPADMPYYYVPPQHPAGPPGMIMGKP-VDQAALYSTQPRPQQPPQQQQQQ--QQQTDS--------
	'Vigna unguiculata scaffold91651-0.2_ORF+1'  --------------------------------------------------------------------------FPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDR-------RGAKTMNALHLKHCVQSYNVFDFLRDIVSRVPYGHGHGHSEAGADDRALSKRRKAAGVEGNESDEEAKRSKMRELGHAGETSAVHEESAQSFRNIDLNANINENEDKNAGAAVEASLPE-PSDMDIKH-EVPGWSLSDVDKMAIDTMQLATLGSRLEEDDEDYDEEG--
	'Vigna unguiculata scaffold3280-processed0.1' -------HQQQQ----------------------------DQMEEKVKSFW-------AQQRKEIEESTDI---VPLSRIKKIMKTDPDVKLVAAETPVVFSKACELFIMELTMK-------NNRRTIKKCDIASAIAKTDVFDFLDDIAP--------------------------------------------------------------------------------------------------------------------------------------------
	'Vigna unguiculata C35048311-processed0.1'   --------------------------------------------------------------------------FPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLEL-------NKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGG---------------------------------------------------------------------------------VMPNIHNLLLPKKAG----------GSSKGAG----------------------
	'Vigna unguiculata scaffold42511-augustus0.4' FPVGKKGRYAQRAPVYLAAVLEYLAAELNKKNRIIPRHLDEELGKLVTIAHGGVLPNINPGSDDTGGKIKKGAGFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLEL-------NKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGG---------------------------------------------------------------------------------VLPNINPVLLPKKTE----------KASKEPK----------------------
	'Phaseolus vulgaris Phvul.005G014300.2.p'    --------------------------------------------------------------------------FPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNALHLKHCVQSYNVFDFLRDIVSRVPYGHGHGHFEGGADDRALSKRRKAAGVEGNESDEESKRSKMRELGHTGENFAAHEESTQSFRNIDLNANLNENEDKNASAAVQASVPE-PADMDIKHEEIPGWSLSEVDKMAIDTMQLATLGSRLEEDDEDYDEE---
	'Phaseolus vulgaris Phvul.006G093200.4.p'    ----------QQ----------------------------HQLQQQLQQFW-------SSQYQEIEKVTDFKNHLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRED-----------------------------------------------------------------------------------------------------------------------------------------
	'Phaseolus vulgaris Phvul.006G152400.1.p'    ----------QQ----------------------------EKMQQRVNSFW-------ARQLKEIEESTDLKSHLPLARIRKIMKFDEDVKMVSTEATMLLAKACELFIMELTMRAWANVEDDKRRIIQKTDISSAISMSDVFDFLVDTVPRDD-----------------------------------------------------------------------------------------------------------------------------------------
	'Phaseolus vulgaris Phvul.006G152500.1.p'    ----------QQ----------------------------EQLQEKVKNFW-------AQQLKRIEEGTDLRSRMPLSRIKKIMKSDPDVKLVSAETPVLFSKACELFIMELTMKAWANAENNSRGKIQKTDIASAIAGTEVFDFLDDIVPIPK-----------------------------------------------------------------------------------------------------------------------------------------
	'Phaseolus vulgaris Phvul.008G008900.1.p'    --------------------------------------------------------------------------LPLARIRRIMKTDADVQMVSAETPMLMSKACEIFIQELTFRAWMRAEESNKSTVQPCDVAKVIMQNDALHFLTDIVPDNL-----------------------------------------------------------------------------------------------------------------------------------------
	'Phaseolus vulgaris Phvul.009G166000.1.p'    --------------------------------------LLHQQQQQLQMFW-------SYQRQEIEHVNDFKNHLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDE-------------------------------------------------------------------LVGATASGVPYYYPPIGQPA---GMMIGRPAVDPTGVYV------QPPSQAWQS--VWQSAADDASY---
	'Phaseolus vulgaris Phvul.011G196500.1.p'    --------------------------------------------------------------------------FPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYNVFDFLRDVVSRVPHGHGHGHAEAGADDRAISKRRKAVGDDGNDSDEEAKRGKMQEVSHTGENIAVPVVSTDSLRNIDLNAVTNENDDKKASVAADTSLPE-PPSTEVKHEEILGWPLSDVDKMAIDSTQLAQLARPLEEEEEDYDEE---
	'Phaseolus vulgaris Phvul.008G204500.1.p'    -----------------------------------------------------------------------------------MQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLRRGAKTMNAFHLKQCVQTFNVFDFLKDIVSTGGRGRGRGRGRG--------------------------RGR-------------------GIRN--------------------------------KHDEYPGWSLSDMEKMTIDPIQLANINGRIDEDEEDYDEE---

;


END;

BEGIN ASSUMPTIONS;
	TYPESET * UNTITLED   =  unord:  1 -  291;

END;

BEGIN NOTES;

	TAXABITS   NAME = newlyAddedTaxon on =  1 -  19;

END;

BEGIN CODONS;
	CODESET * UNTITLED   =  universal:  1 -  291;


END;

BEGIN MESQUITECHARMODELS;
	ProbModelSet * UNTITLED   =  'Mk1 (est.)':  1 -  291;
END;

Begin MESQUITE;
		MESQUITESCRIPTVERSION 2;
		TITLE AUTO;
		tell ProjectCoordinator;
		timeSaved 1510173994036;
		getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa;
		tell It;
			setID 0 2347941333564215690;
		endTell;
		getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters;
		tell It;
			setID 0 6527313787645984986;
			mqVersion 331;
			checksumv 0 3 1990832342 null  getNumChars 291 numChars 291 getNumTaxa 19 numTaxa 19   short false   bits 1048575   states 1048575   sumSquaresStatesOnly 1.9707461684081E13 sumSquares 1.9707461684081E13 longCompressibleToShort false usingShortMatrix false   NumFiles 1 NumMatrices 1;
			mqVersion;
		endTell;
		getWindow;
		tell It;
			suppress;
			setResourcesState true false 100;
			setPopoutState 300;
			setExplanationSize 0;
			setAnnotationSize 0;
			setFontIncAnnot 0;
			setFontIncExp 0;
			setSize 700 464;
			setLocation 8 8;
			setFont SanSerif;
			setFontSize 10;
			getToolPalette;
			tell It;
			endTell;
			desuppress;
		endTell;
		endTell;
end;