#NEXUS
[written Wed Nov 08 15:45:33 EST 2017 by Mesquite  version 3.31 (build 859) at Bennu.fios-router.home/192.168.1.156]

BEGIN TAXA;
	TITLE Cowpea_bean_BES_Taxa;
	DIMENSIONS NTAX=7;
	TAXLABELS
		'Arabidopsis thaliana AT2G45880.1' 'Arabidopsis thaliana AT1G19350.1' 'Vigna unguiculata scaffold56985-augustus0.2' 'Vigna unguiculata scaffold30811-0.2' 'Phaseolus vulgaris Phvul.001G016050.2.p' 'Phaseolus vulgaris Phvul.002G026800.2.p' 'Phaseolus vulgaris Phvul.008G065600.1.p' 
	;

END;


BEGIN CHARACTERS;
	TITLE  Cowpea_bean_BES_MAFFT;
	DIMENSIONS  NCHAR=730;
	FORMAT DATATYPE = Protein GAP = - MISSING = ?;
	MATRIX
	'Arabidopsis thaliana AT2G45880.1'           MATDMHKLLGTSEEDDDEEMDMDVKEEDDGDRRNRDKHAASGSSSNDEFMFQQSMQDQVGTPGGGGSRRSRPLEEKERTKLRERHRRAITARILGGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSKSQGTKPTG-GSSAVAAGSSASHIASQQTSPPALRVVSSGLRSPVELSSCRMKGVFTPAPSPYDMLPIQSPELVGSVNKAEGLVGCS----VDVINSKQIL-EIPPNLTEQDFSGTPYV---PVYVMLPLGVINMKCELADR---------------DGLLKHLRILK-SIHVDGVKVDCWWGIVEGHSPQEYNWTGYRQLFQMVRDLNLKIQVLMSFHECGGNVGDDVCIPLPHWVAEIGRTNPDIYFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRIELAEFLEDGVISMVEIGLGPCGELRYPSCPIKHGWRYPGVGEFQCYDKYLSKSLRKAAESRGHLFWARGPDNTG-------------SYNSQPQGTGFFCDGGDYDGLYGRFFLKWYSQVLIDHADQILCLAKLVFDSSCIAAKLPDVHWWYRTASHAAELTAGFYNPSNRDGYSAIASTLKKHGATLSFVSGEVQVLNRPDDFSGALGEPEAVAWQVLNAAWDSGTPVARENSLACHDRVGYNKMLESVKFRNDPDRKHLSSFAYSRLVPALMEGHNIVEFERFVKKLHGEAVMNHHHHHHQQV-
	'Arabidopsis thaliana AT1G19350.1'           MTS-------------------------DGATSTSAAAAAA----------------------AMATRRKPSWRERENNRRRERRRRAVAAKIYTGLRAQGNYNLPKHCDNNEVLKALCSEAGWVVEEDGTTYRKG-HKPLPGDMAGSS----SRATPYS-SHNQSPLSSTFDSPILS-YQVS---------PSSS-----SFPSPSRVG-----------------DPHNISTIF---------------PFLRNGGIPSSLPPLRISNSAPVTPPVSSPTSRNPKPLPTWESFTKQSMSMA-AKQSMTSLNYPFYAVSAPASPTH-----HRQFHA-----------PATIPEC--DESDSSTVDSGHWI----------------------------------------------------SFQKFAQQQPFSASMVPTSPTFNLVKPAPQQLS------------------------------------PNTAAIQEIGQSSEFKFENSQVKP----------------------WEGERI------------------------------HDVAMEDLELTLGNGK-------------------------------------------------------------------------------------------------------------------------AHS---------------
	'Vigna unguiculata scaffold56985-augustus0.2' MTS-------------------------DGATS------------------------------AITNRRKPSWRERENNRRRERRRRAIAAKIYTGLRAQGNYNLPKHCDNNEVLKALCAEAGWTVEEDGTTYRKGCRAPLPGG-AGTS----TRNTPF--SQNPSPLSSSFPSPI-S-YQVS---------PSSS-----SFPSPS---------------------------LI---------------PYIRH-SFSASLPPLRISNSAPVTPPLSSPTSRNPKPIPTWDSIVKASMASSFNHHHHHHQNHPFFAASAPASPT------HRHLHA-----------PPTIPEC--DESDTSTVE-GQWL----------------------------------------------------NFQAFG--------------------PVCQ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
	'Vigna unguiculata scaffold30811-0.2'        MKS----------------------INDDGSTQDLDPQSDHSSDYLAHPNSNPQPHPHPRRPRSVAKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWVVDADGTTY----------------------------RQCPPPSHMGVKETIEN--QTSVLRIDECLSPA-------SIDSVVIAERDSKNEKYTNASPINTVDCLEADQLMQDIHSGVHENDFTGTPYV---PVYVKLPAGIINKFCQLIDP---------------EGIRQELMHMK-SLNVDGVVVDCWWGIVEGWSPQKYVWSGYRELFN------------MAFHECGGNDSSDALISLPQWVLDIGKDNQDIFFTDREGRR-------GIDKERVLKGRTGIEVYFDMMRSFRTEFDDLFAEGLISAVEVGLGASGELKYPSFSERMGWR-----EFQCYDKYLQHSLRRAAKLRGHSFWARGPDNAG-------------HYNSMPHETGFFCERGDYDNYYGRFFLHWYSQTLIDHADNVLSLATLAFEETKIIVKVPAVYWWYKTPSHAAELTAGYHN-----GYSPVFEVLRKHAVTMKFVCLGFHLSSQ--EANESLIDPEGL-----------------SNALLCYDREGYKRLVDTAKPRNDPDHRHFSFFVY-QQPSLLQANVCLSDLDFFVKCMH----------------
	'Phaseolus vulgaris Phvul.001G016050.2.p'    -----------------------------------------------------------------ASRRKPSWRERENNRRRERRRRAIAAKIYSGLRAQGSYNLPKHCDNNEVLKALCAEAGWCVEDDGTTYRKS-------------------------SQSPSPFSSSYPSPIPS-YQVS---------PSSS-----SFPRLDV-------------------DKDSVSNLI---------------PYIRN-------PPLRISNSAPVTPPLSSPTSRNPKPIPTW-SIAKESMASF---------NYPLFAASAPASPT------HRHLY--------------TIPEC--DES-TSTCESSQWM----------------------------------------------------KFQAFAP----SASTLPTSPTFN--KPLVPHIV------------------------------------PDN-SIQEM---------RTQVMP----------------------WVGEKI------------------------------HEVALDDLELTLGSGK-------------------------------------------------------------------------------------------------------------------------------------------
	'Phaseolus vulgaris Phvul.002G026800.2.p'    -----------------------------------------------------------------STGRMPTWKERENNKRRERRRRAIAAKIYTGLRAQGNFKLPKHCDNNEVLKALCAEAGWIVEEDGTTYRKS-------------------------SIQPSPQSSSFPSPAPS-YHAS---------PTSS-----SFPPTRI-------------------DANPSSFLI---------------PFIRN-------PPLRISNSAPVTPPLSSPRTS------------------------------------------------KRKANF-----------DSTIPEC--DES--------------------------------------------------------------------------------------------------------------------------------------------------------RVKP----------------------WEGERI------------------------------HEVGMDDLELTLGFGK-------------------------------------------------------------------------------------------------------------------------------------------
	'Phaseolus vulgaris Phvul.008G065600.1.p'    -----------------------------------------------------------------GTRRSRPVEEKERTKLRERRRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSE------------------------------------------------------------------------------------------------KQIA-DLPPRLPERDLAGSPYV---PVYVMLPLGVINIKCELVDP---------------DGLLKQLRVLK-SVHVDGVMVDCWWGIVEAHAPQEYTW--YKRLFQMVREVKLKLQVVMSFHECGGNFGDDVCIPLPHWVAEIGRSNPDIFFTDREGRHNPECLSWGIDKERVLRGRTAVEVYFDFMRSFRVEFDEYFEDGLISMVEVGLGPCGELRYPSCPVKHGWRYPGIGEFQCYDQYMLKSLRKAAEARGHAIWARGPDNAG-------------TYNSQPHETGFFCDGGDYDGFYGRFFLSWYSQVL-DHGNRVLSLAKLAFEGSCVTAKLSGIYWWYKTASHAAELTAGYYNPCNRDGYAAILTMLKINGVSLNIPCVELHTLNQ---------DPEGLVWQVLNAGWDVDLPVTSQNGFPCLNRVSYNKVLDHAKPMNDPDGRHFSSFTY-RLSPVLMERQNFIEFERF---------------------

;


END;

BEGIN ASSUMPTIONS;
	TYPESET * UNTITLED   =  unord:  1 -  730;

END;

BEGIN NOTES;

	TAXABITS   NAME = newlyAddedTaxon on =  1 -  7;

END;

BEGIN CODONS;
	CODESET * UNTITLED   =  universal:  1 -  730;


END;

BEGIN MESQUITECHARMODELS;
	ProbModelSet * UNTITLED   =  'Mk1 (est.)':  1 -  730;
END;

Begin MESQUITE;
		MESQUITESCRIPTVERSION 2;
		TITLE AUTO;
		tell ProjectCoordinator;
		timeSaved 1510173933929;
		getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa;
		tell It;
			setID 0 2149588517858831778;
		endTell;
		getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters;
		tell It;
			setID 0 7293261954762856921;
			mqVersion 331;
			checksumv 0 3 3016706233 null  getNumChars 730 numChars 730 getNumTaxa 7 numTaxa 7   short false   bits 1048575   states 1048575   sumSquaresStatesOnly 3.2420386756786E13 sumSquares 3.2420386756786E13 longCompressibleToShort false usingShortMatrix false   NumFiles 1 NumMatrices 1;
			mqVersion;
		endTell;
		getWindow;
		tell It;
			suppress;
			setResourcesState true false 100;
			setPopoutState 300;
			setExplanationSize 0;
			setAnnotationSize 0;
			setFontIncAnnot 0;
			setFontIncExp 0;
			setSize 700 464;
			setLocation 8 8;
			setFont SanSerif;
			setFontSize 10;
			getToolPalette;
			tell It;
			endTell;
			desuppress;
		endTell;
		endTell;
end;