#NEXUS
[written Wed Jan 03 12:31:50 SGT 2018 by Mesquite  version 3.3 (build 854) at 176-230.priv23.nus.edu.sg/172.23.176.230]

BEGIN TAXA;
	TITLE Taxa;
	DIMENSIONS NTAX=9;
	TAXLABELS
		Acantahmoeba_castellanii_AcOxa1 Dictyostelium_discoideum_DdOxa1B Dictyostelium_discoideum_DdOxa1A Dictyostelium_fasciculatum_DfOxa1A Dictyostelium_fasciculatum_DfOxa1B Dictyostelium_purpureum_DpOxa1B Dictyostelium_purpureum_DpOxa1A Polysphondylium_pallidum_PpOxa1B Polysphondylium_pallidum_PpOxa1A 
	;

END;


BEGIN CHARACTERS;
	TITLE  Amoebozoa_supergroup_Oxa;
	DIMENSIONS  NCHAR=449;
	FORMAT DATATYPE = Protein GAP = - MISSING = ?;
	MATRIX
	Acantahmoeba_castellanii_AcOxa1     -----------------------------------------------MLIRHERRCYATETVEEGATAAAEAATQTGAAVERGSD----------------------AMASFIAADPVTSLTPAALEVVERTTSSFPP------------------INWLVDAMTFVHYTVPLSWAATAVCFTLAFRTMILPAVALTMQNSAKMRAVQPELEKIKAKYGPNVGKDVN--VAMQYREEVRKMMAQSGVSMWKTMVPFLVQTPLFVSFFFTTRKLAEEEPGLR-DASFLFFNDLSAADP-YYIMPILTSLTMLATIELGSDGVGGQSNPALKNFLRLFSVLAIPATSSLPIFTHIYWFSSNLFSLCQLGLFKVPFIKKALGLPD-------------YQGVSPMLGSSDPQPAKPEVTFQQKPRIIRTKNQK-------------------
	Dictyostelium_discoideum_DdOxa1B    MFNRILNNNVCKKTLLNQSFNLINKNN--FKFSLYKNSSNFSGVILNSNNNNNNRFYTSTTNNNNNNNNNNNQNVITTPTSTATK---------------TTELTELTESTSYDPNKLGGGIDETLKINLEDFKHVLD---------PEMVPITGLPSFIEVCLNQLHHLTSLPWLVIVPVFTLFIRSALFPLSIKHRINSMRLLEIRPQLDKFKEQQKINRKNKASIQVRAQTSQKITTLLKEKGCHPVLSYILPMANLPFLISSIIAFRDMAANYPSLK-DAGMLWFTDLSQSDP-IFVLPVICSSLYLIATELAFSKNTNPLMVALKWVSRGMSLLLIAFSPTIPSICYLYWIPSGLFTIAQSLAFNSKRVCKFLGLPIS------------IKSGDS-VISLFNDGENKKPEIKYAPELPSSSKSKPIFNKKK------------
	Dictyostelium_discoideum_DdOxa1A    --------------MINALKRVPINGMNKKLFIKSFSTTTVSPILFSSSQSLSSTSKILPTFSKSNFLEN-NIKNFNKRFFSTENNNNNSNNNNNVDTDINTPISDFSSTASSSSASTTTTEVITDTISNKVLPSYILKPTMGPDAFTITEWSHQFNFDLIAKLNELHVQYGLPWVSIFVGTAIAIRVLTLPLAIRNQRDAAKMRLVKQDMEKHSYLNDGTQEG------RIKIAELQKKSFAKHDTSPMKTLGLNMLQMPFIIYPFIFLR-QLSGDTNLLVDAGALWFKNLSMADP-YYILPLVSSIFQYGSVRFSMTDDTSPMMKTIMTS---FCFLPLVFTIHFAASLNIYWAVNSMIFAFTNWFLKSERGCK-------------------------------------------------------------------------
	Dictyostelium_fasciculatum_DfOxa1A  --------MIGSRALRRTLVSSINKSSSASFAVGNNNNVFRYNLLNGTTSSSSSSSMMMNNNNVGSIIGQSFINRNSRFYSTDNNKNEIVYDTTTTVPQQTIQLTNAQEKAIETVVNSTSDVSVGSIISQPSTTTTTTQIIYDTPQNPIIEAVSNFNTGIVESINNFSISSGCPWWLCIAGMTVGLRFLILPLTVKQQRSAAAMALVKEEMEKHSYLNDGTTEG------KMKLFTLQREISVKHGVSPMKLLFVGLAQAPAYIYLFYIIRSACVDFPQFVTNGGLLWFPNLSIVDPYVYALPIISSLFQWTSMRLSFTETTPLIMKIVFGG---LCILPLYFTLDFPAGLNLYWCINSLLFVVQNYIFKKPAVKRFFNIPIHGKPTTGAGSAMEIRTAPEVIKKVAPESIFPE--DKAMRLEKLKLEVK---EKKKDAL-----GRRK
	Dictyostelium_fasciculatum_DfOxa1B  -----MIKSILNQRLYQSSIRLNHHSSLLNNVNNINQS--------LFNHKECYNYHSTTSTSKSNVSSSLFKSSSSSPLSLLSS-LRLNNNFGG---LSSKRCYSTQPSSTTATTTTTSQQPEVTTITMEQLMSILPK------DDPSLIEITGLPSLIEVCLNALHTSTGLSWLVIVPVYTLLLRSALFPFAIKQRVNVARIMEIRPQLDEFKRISKENRAKGISN---YENSNKITALLKEKKCHPALSYIFPLANLPFFISTILAIRGMAETFPSLK-DAGMLWFTDLSIPDS-TYILPVTCSVLYLAINELSLAKSDSLILKTLSWFARALSIAIIPFSYTIPNLVYFYWIPSSLFTLGQLFVFKSERMCKLLNAPY-------------FASMAPPIQQIIYTPQSPPPKASSITIESDVNNIQPGRNSHIVKEKFERKKKK-
	Dictyostelium_purpureum_DpOxa1B     ----MITNNILKRSLYNGIRFNNTRNC--LNINKLSTTAILTTSAKSNLNNLSFRNYSTENNNINNNTNSNNIDNFDIKNYIVDP---------------NKINSAASNNNILEPTKLPTDNIDTITINLDKFK-IND---------PELIPITGIPTFIEVCLNKLHQFSHLPWLIIVPTFTVALRLALFPISIKSRVNSARLLEIKPQLDKFKEQQKLLRQKGAPLSERAEVSDKITTILREKGCHPIYSFLLPLSNLPFLVSSVFAFRDMAENYPSLK-DAGMLWFPDLASSDP-LFILPTICSALYLLATELAFANSQSFLINLVKWVSRIMSVSLILFSPSIPAICYLYWVPSAIFTIAQIQLFNSNKFLKLLGLPQN------------INSQSTNILNIFSNKVNK--DIKYAPELPN------------------------
	Dictyostelium_purpureum_DpOxa1A     --------------MIRGIK-----------FLNTKSG------VITSMNRFQSRSFINSTIKSTSFLNNTNNKITYKRSYSTDPNNNSSN------------ITDLSSTTSNITDLSTNATNIVNGIK---YADYVKTETISPDESLISAFFSKINFDNIEVLNGLHENYGLSWVAIIAGMALALRVTTFPVTLRTQRISAKMRMVRLETEKHGYLNDGTTEG------RLKLMQLQQQIMKKYNVSPLSAIGPNLVLLPLLIYPFLIIR-QISDHTTLLDNTSFLWADSLSAVDP-YYLLPILSSAFQLLSTRFTLTADTHPLMKGFMYS---ISVLPLLFTIHFSAGLNVYWCTNSILFSLTNLFFKSKFGANLFGLPYDDPKSLKNEKIVIAPDQFTPVKTIEEIKDFEDIGKKEKLQEQIRAKNELIEKRKEELKAFRRKKN--
	Polysphondylium_pallidum_PpOxa1B    ----MLSKSLFSNRSYRGLSVIKHLNGPRSNIGKQFQNEGMITMIHTMNKSLSYRSYSSATPSSSSSSSSNNISNIDQKITAMNSNIDLNSPYNGEIPILNSHMLSSQNSSVATTTTTGSNEVKLSELGAAQAEAITQ--------DPSMLEITGLPTFIEVLLHHLHSATGWSWMVIVPAFTLLIRSALLPFAVKQRINVTRLMEIKPQLDKFKEKSQENRATGASN---YDNSVAITKLLKDKKCHPALSYILPLANLPFFISAIIAMREMAATFPSMK-TAGMLWFTDLSAMDP-YFILPIISSASYLLVNELTLGNAPNLFLKAISWVARIMALLIIPFSYTIPSIVYFYWIPSSIFTLAQIYAFKSPRISKLLGMPV-------------FNNNQP-IIPVGDTPNKKKFTPPPTDPKKKINRI--------------------
	Polysphondylium_pallidum_PpOxa1A    -----------MQSLNRSILRSVFNSQ------NRNANSVRSTSNLIFKSSSSGSTMLFSNN----LVSKSGIKIRN--YSTPSNNN-------NTIIENPINTSG---------INSTSDINVSPNLVEMVESLPP-------PPNPIVEAIGNFNNSIIESFNQFSVNTGIPWWLCIVGATVALRFVILPFTVKTQRSQVKMQKVREEMEKNAHLNDGTMEG------RMKMASLQSELSKKHGVSALSMMGLGLAQAPFYIYFFVLVRSACMDFPQYVSNGGALWFKDLSVMDP-TYILPVASSFLQLQSVRMSFNETTPLIMKIIFNG---LCFVPLFFTLKFAAGLNVYWCINSLLFVIQNYLFKQNSVKKFFNIPIVEESAKKT-----IQFAPKTAVTLPEDMIKAQNAEKQKKIEKLKHEISTIRQAKQKAMDENFGGRRK

;


END;


BEGIN TREES;
	Title Amoebozoa_supergroup_Oxa;
	ID 015feaab64c71;
	LINK Taxa = Taxa;
	TRANSLATE
[0] 		1 Acantahmoeba_castellanii_AcOxa1,
[1] 		2 Dictyostelium_discoideum_DdOxa1B,
[2] 		3 Dictyostelium_discoideum_DdOxa1A,
[3] 		4 Dictyostelium_fasciculatum_DfOxa1A,
[4] 		5 Dictyostelium_fasciculatum_DfOxa1B,
[5] 		6 Dictyostelium_purpureum_DpOxa1B,
[6] 		7 Dictyostelium_purpureum_DpOxa1A,
[7] 		8 Polysphondylium_pallidum_PpOxa1B,
[8] 		9 Polysphondylium_pallidum_PpOxa1A;
	TREE Fig._3D = (((3:0.37471023,7:0.36644617):0.12455143[%posteriorProbability = 0.99 ],(4:0.27453917,9:0.25335843):0.22971512[%posteriorProbability = 1 ]):0.170020135[%posteriorProbability = 1 ],(1:0.70634629,((2:0.22259618,6:0.29214335):0.13822693[%posteriorProbability = 0.995 ],(5:0.28168656,8:0.25954458):0.05842559[%posteriorProbability = 0.883 ]):0.37902089[%posteriorProbability = 1 ]):0.170020135)[% ] [% ] [%  setBetweenBits = selected setBetweenDouble = posteriorProbability ];

END;