NEXUS [File created by TreeBASE: 1/16/09 15:39:03] [Matrix accession#: M4187] BEGIN TAXA; TITLE M4187; DIMENSIONS NTAX=12; TAXLABELS Fahrenholzia_pinnata Fahrenholzia_reducta Pediculus_humanus_capitis_23 Pediculus_humanus_capitis_25 Pediculus_humanus_capitis_3 Pediculus_humanus_capitis_20 Pediculus_humanus_humanus_1 Pediculus_humanus_humanus_3 Pediculus_schaeffi Pthirus_pubis Pthirus_gorillae Pedicinus_badii ; END; BEGIN CHARACTERS; TITLE M4187; DIMENSIONS NCHAR=327; FORMAT DATATYPE = DNA MISSING = ? GAP = - ; MATRIX Fahrenholzia_pinnata ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Fahrenholzia_reducta AGGAAGTCGACGGGCGGCAAGGCGCCGCGCAAGCAGCTGGCGACGAAGGCGGCGAGGAAGAGCGCGCCGGCCACGGGGGGCGTGAAGAAGCCGCATCGGTACCGGCCGGGGACGGTGGCGCTGCGCGAGATCAGGCGCTACCAGAAGAGCACGGAGCTGCTGATCCGGAAGCTGCCGTTCCAGCGGCTGGTGCGCGAGATCGCGCAGGACTTCAAGACCGACCTGCGGTTCCAGAGCTCGGCGGTGATGGCGCTGCAGGAGGCGAGCGAGGCGTACCTGGTGGGCCTGTTCGAGGACACGAACTTGTGCGCGATCCACGCCAAGCGA Pediculus_humanus_capitis_23 CGTAAGTCGACGGGAGGTAAGGCTCCCCGTAAGCAACTGGCGACCAAAGCCGCCAGGAAAAGTGCTCCGGCCACGGGAGGAGTCAAAAAGCCTCACCGTTACCGTCCGGGAACCGTAGCTCTTCGTGAGATCAGACGTTACCAGAAGAGCACGGAATTGCTCATAAGAAAATTACCGTTTCAGCGTCTCGTGAGAGAAATCGCTCAGGATTTCAAGACCGATCTTAGATTTCAGAGTTCGGCCGTGATGGCTTTGCAGGAGGCGAGCGAGGCTTATCTGGTCGGATTATTCGAAGACACAAACTTGTGCGCCATTCACGCCAAGCGT Pediculus_humanus_capitis_25 CGTAAGTCGACGGGAGGTAAGGCTCCCCGTAAGCAACTGGCGACCAAAGCCGCCAGGAAAAGTGCTCCGGCCACGGGAGGAGTCAAAAAGCCTCACCGTTACCGTCCGGGAACCGTAGCTCTTCGTGAGATCAGACGTTACCAGAAGAGCACGGAATTGCTCATAAGAAAATTACCGTTTCAGCGTCTCGTGAGAGAAATCGCTCAGGATTTCAAGACCGATCTTAGATTTCAGAGTTCGGCCGTGATGGCTTTGCAGGAGGCGAGCGAGGCTTATCTGGTCGGATTATTCGAAGACACAAACTTGTGCGCCATTCACGCCAAGCGT Pediculus_humanus_capitis_3 CGTAAGTCGACGGGAGGTAAGGCTCCCCGTAAGCAACTGGCGACCAAAGCCGCCAGGAAAAGTGCTCCGGCCACGGGAGGAGTCAAAAAGCCTCACCGTTACCGTCCGGGAACCGTAGCTCTTCGTGAGATCAGACGTTACCAGAAGAGCACGGAATTGCTCATAAGAAAATTACCGTTTCAACGTCTCGTGAGAGAAATCGCTCAGGATTTCAAGACCGATCTTAGATTTCAGAGTTCGGCCGTGATGGCTTTGCAGGAGGCGAGCGAGGCTTATCTGGTCGGATTATTCGAAGACACAAACTTGTGCGCCATTCACGCCAAGCGT Pediculus_humanus_capitis_20 CGTAAGTCGACGGGAGGTAAGGCTCCCCGTAAGCAACTGGCGACCAAAGCCGCCAGGAAAAGTGCTCCGGCCACGGGAGGAGTCAAAAAGCCTCACCGTTACCGTCCGGGAACCGTAGCTCTTCGTGAGATCAGACGTTACCAGAAGAGCACGGAATTGCTCATAAGAAAATTACCGTTTCAGCGTCTCGTGAGAGAAATCGCTCAGGATTTCAAGACCGATCTTAGATTTCAGAGTTCGGCCGTGATGGCTTTGCAGGAGGCGAGCGAGGCTTATCTGGTCGGATTATTCGAAGACACAAACTTGTGCGCCATTCACGCCAAGCGT Pediculus_humanus_humanus_1 CGTAAGTCGACGGGAGGTAAGGCTCCCCGTAAGCAACTGGCGACCAAAGCCGCCAGGAAAAGTGCTCCGGCCACGGGAGGAGTCAAAAAGCCTCACCGTTACCGTCCGGGAACCGTAGCTCTTCGTGAGATCAGACGTTACCAGAAGAGCACGGAATTGCTCATAAGAAAATTACCGTTTCAGCGTCTCGTGAGAGAAATCGCTCAGGATTTCAAGACCGATCTTAGATTTCAGAGTTCGGCCGTGATGGCTTTGCAGGAGGCGAGCGAGGCTTATCTGGTCGGATTATTCGAAGACACAAACTTGTGCGCCATTCACGCCAAGCGT Pediculus_humanus_humanus_3 CGTAAGTCGACGGGAGGTAAGGCTCCTCGTAAGCAACTGGCGACCAAAGCCGCCAGGAAAAGTGCTCCGGCCACGGGAGGAGTCAAAAAGCCTCACCGTTACCGTCCGGGAACCGTAGCTCTTCGTGAGATCAGACGTTACCAGAAGAGCACGGAATTGCTCATAAGAAAATTACCGTTTCAACGTCTCGTGAGAGAAATCGCTCAGGATTTCAAGACCGATCTTAGATTTCAGAGTTCGGCCGTGATGGCTTTGCAGGAGGCGAGCGAGGCTTATCTGGTCGGATTATTCGAAGACACAAACTTGTGCGCCATTCACGCCAAGCGT Pediculus_schaeffi CGTAAATCTACAGGAGGCAAAGCTCCCCGTAAACAACTCGCGACCAAAGCCGCCAGGAAAAGTGCTCCGGCCACCGGAGGAGTCAAGAAACCTCACCGTTACCGTCCCGGAACCGTAGCTCTTCGTGAAATCAGACGTTATCAGAAAAGTACCGAATTGCTCATMAGRAAATTGCCGTTCCAGCGTCTCGTGAGAGAAATCGCTCAGGATTTCAAAACCGATTTGAGATTTCAGAGTTCGGCCGTGATGGCTTTGCAAGAGGCGAGCGAAGCTTACCTGGTCGGATTGTTCGAAGACACGAACTTGTGCGCCATTCACGCCAAGCGT Pthirus_pubis CGTAAATCGACGGGAGGAAAAGCTCCTCGAAAACAACTTGCCACCAAAGCTGCTCGTAAAAGTGCACCCGCAACCGGTGGAGTCAAAAAACCTCATCGTTACCGTCCTGGAACCGTAGCTTTGAGAGAAATTCGTCGTTATCAGAAAAGCACAGAACTGTTGATCAGGAAATTGCCATTTCAACGTTTGGTGAGAGAAATCGCTCAGGACTTCAAGACCGATTTGAGATTTCAAAGCAGTGCAGTCATGGCCTTGCAAGAAGCCAGCGAAGCTTATCTGGTGGGATTGTTCGAAGACACGAATTTGTGTGCCATCCACGCCAAACGA Pthirus_gorillae CGTAAATCGACGGGAGGAAAAGCTCCTCGAAAACAACTTGCCACCAAAGCTGCACGTAAAAGTGCACCCGCAACCGGTGGAGTCAAGAAACCTCATCGTTATCGTCCTGGAACCGTAGCTTTGAGAGAAATCCGTCGTTATCAAAAAAGCACAGAATTGCTCATCAGAAAACTGCCATTTCAACGTCTGGTGAGAGAAATCGCTCAGGATTTCAAGACCGATTTGAGATTTCAAAGCAGCGCAGTCATGGCTTTGCAAGAAGCCAGCGAAGCTTATTTGGTGGGATTGTTCGAAGACACGAATTTGTGCGCCATTCACGCCAAACGT Pedicinus_badii CGTAAATCCACTGGAGGTAAAGCTCCGAGAAAACAATTGGCTACCAAGGCAGCCAGGAAAAGTGCTCCGGCCACTGGAGGAGTAAAGAAACCCCATCGGTATCGTCCTGGAACTGTTGCACTTCGAGAAATCAGAAGATACCAAAAAAGTACTGAATTGCTCATTAGAAAATTACCGTTTCAACGTCTCGTAAGGGAAATTGCTCAGGACTTCAAAACTGATTTGAGATTTCAAAGTTCGGCCGTAATGGCATTGCAAGAAGCCAGCGAAGCGTACTTGGTTGGTTTATTTGAAGACACCAACTTGTGTGCCATTCACGCCAAACGT ; END; BEGIN CODONS; CODONPOSSET * CodonPositions = N: 1 - 327 ; CODESET * UNTITLED = Universal: all ; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; END;