NEXUS
[File created by TreeBASE:  1/16/09  15:39:04]
[Matrix accession#: M4193]

BEGIN TAXA;
	TITLE M4193;
	DIMENSIONS  NTAX=12;
	TAXLABELS
		Fahrenholzia_pinnata	Fahrenholzia_reducta	Pediculus_humanus_capitis_23	Pediculus_humanus_capitis_25	Pediculus_humanus_capitis_3	Pediculus_humanus_capitis_20	Pediculus_humanus_humanus_1	Pediculus_humanus_humanus_3	Pediculus_schaeffi	Pthirus_pubis	Pthirus_gorillae	Pedicinus_badii
	;
END;

BEGIN CHARACTERS;
	TITLE M4193;
	DIMENSIONS NCHAR=345;
	FORMAT DATATYPE = DNA MISSING = ? GAP = - ;
	MATRIX
		Fahrenholzia_pinnata               AAGAACGTGTCCGTGAAGGAATTGCGCCGTGGATACGTTGCAGGCGACTCGAAGAACAACCCTCCGAAGGCCGCTGCTGACTTCCTTGCTCAGGTCATTGTGTTGAACCATCCCGGACAGATTTCAAACGGCTACACGCCCGTCTTAGATTGCCACACGGCCCACATAGCATGCAAATTTGCGGAAATTAAGGAGAAATGCGACCGCCGTACCGGAAAGACCACCGAGGAGAACCCGAAGAGCATCAAGTCCGGAGACGCCGCCATCGTGAATTTGGTGCCGTCTAAGCCAATGTGCGTCGAGTCTTTCTCCGAATTTCCTCCACTCGGCCGTTTCGCCGTACGT
		Fahrenholzia_reducta               AAGAACGTATCTGTGAAGGAATTACGTCGTGGATACGTTGCCGGCGATTCTAAGAACAACCCTCCGAAAGCCGCTGCTGACTTCCTTGCTCAGGTCATTGTCTTGAATCATCCTGGACAGATTTCAAACGGCTACACGCCCGTCTTAGATTGCCACACGGCCCACATAGCTTGCAAATTTGCCGAAATTAAGGAGAAATGCGACCGTCGTACGGGCAAGACTACCGAGGAGAATCCGAAGAGCATAAAGTCCGGAGACGCCGCCATCGTTAATTTGGTTCCGTCTAAACCAATGTGCGTCGAGTCTTTCTCCGAATTTCCTCCTCTCGGTCGTTTCGCCGTCCGT
		Pediculus_humanus_capitis_23       AAAAACGTTTCCGTAAAAGAATTGCGACGTGGATACGTTGTTGGTGACGCTAAAAATAATCCACCAAAAGCTGCAGCTGATTTCCTTGCTCAGGTCATTGTGCTAAATCACCCTGGACAAATATCAAACGGATATACTCCCGTATTAGATTGTCATACGGCTCACATAGCCTGTAAATTTGCTGAAATCAAAGAGAAATGTGACCGTCGTACAGGAAAAACAACCGAAGAAAATCCCAAGAGCATTAAAACAGGAGATGCAGCCATCGTTAACTTGGTTCCATCTAAATCCATGTGTGTTGAATCTTTCTCCGAATTTCCGCA----------------------
		Pediculus_humanus_capitis_25       AAAAACGTTTCCGTAAAAGAATTGCGACGTGGATACGTTGTTGGTGACGCTAAAAATAATCCACCAAAAGCTGCAGCTGATTTCCTTGCTCAGGTCATTGTGCTAAATCACCCTGGACAAATATCAAACGGATATACTCCCGTATTAGATTGTCATACGGCTCACATAGCCTGTAAATTTGCTGAAATCAAAGAGAAATGTGACCGTCGTACAGGAAAAACAACCGAAGAAAATCCCAAGAGCATTAAAACAGGAGATGCAGCCATCGTTAACTTGGTTCCATCTAAATCCATGTGTGTTGAATCTTTCTCCGAATTTCCGCA----------------------
		Pediculus_humanus_capitis_3        AAAAACGTTTCCGTAAAAGAATTGCGACGTGGATACGTTGTTGGTGACGCTAAAAATAATCCACCAAAAGCTGCAGCTGATTTCCTTGCTCAGGTCATTGTGCTAAATCACCCTGGACAAATATCAAACGGATATACTCCCGTATTAGATTGTCATACGGCTCACATAGCCTGTAAATTTGCTGAAATCAAAGAGAAATGTGACCGTCGTACAGGAAAAACAACCGAAGAAAATCCCAAGAGCATTAAAACAGGAGATGCAGCCATCGTTAACTTGGTTCCATCTAAATCCATGTGTGTTGAATCTTTCTCCGAATTTCCGCA----------------------
		Pediculus_humanus_capitis_20       AAAAACGTTTCCGTAAAAGAATTGCGACGTGGATACGTTGTTGGTGACGCTAAAAATAATCCACCAAAAGCTGCAGCTGATTTCCTTGCTCAGGTCATTGTGCTAAATCACCCTGGACAAATATCAAACGGATATACTCCCGTATTAGATTGTCATACGGCTCACATAGCCTGTAAATTTGCTGAAATCAAAGAGAAATGTGACCGTCGTACAGGAAAAACAACCGAAGAAAATCCCAAGAGCATTAAAACAGGAGATGCAGCCATCGTTAACTTGGTTCCATCTAAATCCATGTGTGTTGAATCTTTCTCCGAATTTTCCACA---------------------
		Pediculus_humanus_humanus_1        ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
		Pediculus_humanus_humanus_3        AAAAACGTTTCCGTAAAAGAATTGCGACGTGGATACGTTGTTGGCGACGCTAAAAATAATCCACCAAAAGCTGCAGCTGATTTCCTTGCTCAGGTCATTGTGCTAAATCACCCTGGACAAATATCAAACGGATATACTCCCGTATTAGATTGTCATACGGCTCACATAGCCTGTAAATTTGCTGAAATCAAAGAGAAATGTGACCGTCGTACAGGAAAAACAACCGAAGAAAATCCCAAGAGCATTAAAACAGGAGATGCAGCCATCGTTAACTTGGTTCCATCTAAATCCATGTGTGTTGAATCTTTCTCCGAATTTCCGCCTCTAGGTCGTTTTGCCGTTCGT
		Pediculus_schaeffi                 AAAAACGTTTCTGTAAAAGAATTGCGTCGTGGATACGTTGCCGGCGATGCTAAAAATAATCCACCAAAAGCTGCAGCTGATTTTCTTGCTCAGGTCATTGTGCTAAATCACCCTGGACAAATATCAAACGGATATACTCCCGTATTAGATTGTCATACGGCTCACATAGCCTGTAAATTTGCTGAAATCAAAGAGAAATGTGACCGTCGTACAGGAAAGACAACTGAAGAAAATCCCAAGAGCATTAAAACAGGAGATGCAGCCATTGTTAATTTGGTTCCATCTAAACCCATGTGTGTTGAATCTTTCTCCGAATTTCCGCCTCTAGGTCGTTTTGCCGTTCGT
		Pthirus_pubis                      AAAAACGTTTCCGTCAAGGAATTGCGTCGTGGCTATGTTGCTGGTGATTCTAAGAACAATCCACCAAAAGCAGCTGCTGATTTCTTAGCTCAAGTTATTGTGCTAAATCACCCAGGACAAATTTCAAATGGATATACTCCCGTATTAGATTGTCACACGGCTCACATAGCCTGTAAATTCGCTGAAATTAAAGAAAAATGTGACCGTCGTACAGGAAAAACTACTGAAGAAAACCCCAAGAGCATTAAGACAGGAGATGCAGCCATTGTTAGTTTGGTTCCATCTAAGCCCATGTGCGTTGAGTCTTTCTCCGAGTTTCCGCCTCTTGGTCGTTTCGCTGTTCGT
		Pthirus_gorillae                   AAAAACGTTTCCGTCAAGGAATTGCGTCGTGGATATGTTGCTGGTGATTCTAAGAACAATCCACCAAAAGCAGCTGCTGATTTCTTAGCTCAAGTTATTGTGCTAAATCACCCAGGACAAATTTCAAATGGATATACTCCCGTATTAGATTGTCACACGGCTCACATAGCCTGTAAATTCGCTGAAATTAAAGAAAAATGTGACCGTCGTACAGGAAAAACTACTGAAGAAAACCCCAAGAGCATTAAGACAGGAGATGCAGCCATTGTTAGTTTGGTTCCATCTAAGCCCATGTGCGTTGAGTCTTTCTCCGAGTTTCCGCCTCTTGGTCGTTTCGCTGTTCGT
		Pedicinus_badii                    AAAAATGTTTCCGTTAAAGAATTGCGTCGTGGATATGTAGCAGGTGACTCAAAGAACAATCCACCAAAGGCTGCTGCTGACTTCCTTGCACAGGTTATTGTTTTGAACCACCCAGGACAGATTTCAAACGGTTATACACCCGTATTAGATTGCCACACGGCCCATATAGCTTGCAAGTTTGCTGAAATTAAAGAAAAATGTGACCGTCGTACTGGAAAAACAACTGAGGAAAATCCGAAGAGCATTAAATGTGGAGACGCTGCCATTGTTAACTTGGTTCCGTCTAAGCCTATGTGCGTAGAATCTTTCTCCGAATTCCCTCCTCTTGGTCGTTTTGCTGTTCGT
	;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions = 
 N: 1 - 345 ; 
 CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;