#NEXUS [written Sun May 27 19:59:22 SRET 2018 by Mesquite version 3.40 (build 877) at NoPsechrids.local/10.0.1.2] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=48; TAXLABELS 'Ceratocystis atrox CMW19383_EF070414_Eucalyptus_grandis_Australia' 'Ceratocystis atrox CMW19385_NR136981_Eucalyptus_grandis_Australia' 'Ceratocystis cercfabiensis CMW42736_KP727583_Eucalyptus_sp_China_Group_2' 'Ceratocystis cercfabiensis CMW42736_KP727584_Eucalyptus_sp_China_Group_1' 'Ceratocystis cercfabiensis CMW42741_KP727586_Eucalyptus_sp_China_Group_2' 'Ceratocystis cercfabiensis CMW42741_KP727588_Eucalyptus_sp_China_Group_1' 'Ceratocystis cercfabiensis CMW42795_KP727583_Eucalyptus_sp_China_Group_2' 'Ceratocystis cercfabiensis CMW43029_KP727592_Eucalyptus_sp_China_Group_2' 'Ceratocystis cercfabiensis CMW43029_KP727593_Eucalyptus_sp_China_Group_2' 'Ceratocystis cercfabiensis CMW43029_KP727594_Eucalyptus_sp_China_Group_2' 'Ceratocystis changhui BPI596161_AY526304_Colocasia_esculenta_China' 'Ceratocystis changhui BPI596162_AY526305_Colocasia_esculenta_China' 'Ceratocystis changhui CMW43272_KY643886_Colocasia_esculenta_China' 'Ceratocystis changhui PY1_KF963102_Eriobotrya_japonica_China' 'Ceratocystis changhui PY2_KF963101_Eriobotrya_japonica_China' 'Ceratocystis changhui CMW43281_KY643884_Colocasia_esculenta_China' 'Ceratocystis uchidae C1931_AY526308_Xanthosoma__sagittifolium_Fiji' 'Ceratocystis uchidae CMW14796_AY526307_Colocasia_esculenta_Hawaii' 'Ceratocystis uchidae CMW14804_AY526306_Colocasia_esculenta_Hawaii' 'Ceratocystis corymbiicola CMW2939_HM071919_Eucalyptus_pilularis_Australia' 'Ceratocystis corymbiicola CMW29120_NR119830_Corymbia_variegata_Australia' 'Ceratocystis huliohiae CMW44104_Metrosideros_polymorpha_Hawaii' 'Ceratocystis huliohiae CMW46716_Metrosideros_polymorpha_Hawaii' 'Ceratocystis huliohiae CMW46721_Metrosideros_polymorpha_Hawaii' 'Ceratocystis huliohiae CMW46738_Metrosideros_polymorpha_Hawaii' 'Ceratocystis huliohiae CMW47135_KY809155_Metrosideros_polymorpha_Hawaii' 'Ceratocystis huliohiae CMW47143_Metrosideros_polymorpha_Hawaii' 'Ceratocystis huliohiae CMW47149_KY809156_Metrosideros_polymorpha_Hawaii' 'Ceratocystis polychroma CMW11436_AY528971_Syzygium_aromaticum_Indonesia' 'Ceratocystis polychroma CMW11449_AY528972_Syzygium_aromaticum_Indonesia' 'Ceratocystis polychroma CMW11424_AY528970_Syzygium_aromaticum_Indonesia' 'Ceratocystis obpyriformis CMW23807_EU245004_Acacia_mearnsii_South_Africa' 'Ceratocystis obpyriformis CMW23808_EU245003_Acacia_mearnsii_South_Africa' 'Ceratocystis pirilliformis CMW6569_AF427104_Eucalyptus_nitens_Australia' 'Ceratocystis pirilliformis CMW6579_NR119452_Eucalyptus_nitens_Australia' 'Ceratocystis polyconidia CMW23818_EU245007_Acacia_mearnsii_South_Africa' 'Ceratocystis polyconidia CMW23809_EU245006_Acacia_mearnsii_South_Africa' 'Ceratocystis ficicola CMW38544_Ficus_carica_Japan' 'Ceratocystis ficicola CMW38543_NR119410_Ficus_carica_Japan' 'Ceratocystis collisensis CMW42554_KP727580_Cunninghamia_lanceolata_China' 'Ceratocystis collisensis CMW42552_KP727578_Cunninghamia_lanceolata_China' 'Ceratocystis larium CMW25435_EU881907_Styrax_benzoin_Indonesia' 'Ceratocystis larium CMW25434_NR137016_Styrax_benzoin_Indonesia' 'Ceratocystis fimbriata CMW14799_KC493160_Ipomoea_batatas_North_Carolina_USA' 'Ceratocystis fimbriata CMW1547_AF264904_Ipomoea_batatas_Papua_New_Guinea' 'Ceratocystis lukuohia CMW44102_KP203957_Metrosideros_polymorpha_Hawaii_Group_1' 'Ceratocystis lukuohia CMW46741_KY809158_Metrosideros_polymorpha_Hawaii_Group_2' 'Ceratocystis albifundus CMW4068_DQ520638_Acacia_mearnsii_South_Africa' ; END; BEGIN CHARACTERS; TITLE 'Ceratocystis ITS Asian-Australian clade 48x630'; DIMENSIONS NCHAR=630; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX 'Ceratocystis atrox CMW19383_EF070414_Eucalyptus_grandis_Australia' CATGTGTGAAC--GTAAT--TATCTTGT------GAAGAGAT--------GAACAAAA-GCTGCTTTGGTAG-TT----------GTTGGGGGGCAC---------CCTTCTGTAAAGAAGTTTTCTTTC---------------------CCACTAC-------------CAGCAGTAATAA--GTCA-TCTTCTT-------------TACCACTAAAAA----CTC-TTTTATTTTTT--GTTAGAAATTTGATTTCATTGCTGAGTGGGGCATAAACTAT--AAAAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGAACTCTTTTTTTTTTTTTCTTGGTGTTGGAGGTCCTGTTCTCCCCT--------------GAACAGGCCGCCGAAATG-ATCGGCTGTTAT----ACTTG-CCAACTCCCCTGTGTAG---TA??????????????????????????????????????????? 'Ceratocystis atrox CMW19385_NR136981_Eucalyptus_grandis_Australia' CATGTGTGAAC--GTAAT--TATCTTGT------GAACAGAT--------GAACAAAA-GCTGCTTTGGTAG-TT----------GTTGGGGGGCAC---------CCTTCTGTAAAGAAGTTTTCTTTC---------------------CCACTAC-------------CAGCAGTAATAA--GTCA-TCTTCTT-------------TACCACTAAAAA----CTC-TTTTATTTTTT--GTTAGAAATTTGATTTCATTGCTGAGTGGGGCATAAACTAT--AAAAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGAACTCTTTTTTTTTTTTTCTTGGTGTTGGAGGTCCTGTTCTCCCCT--------------GAACAGGCCGCCGAAATGCATCGGCTGTTAT----ACTTG-CCAACTCCCCTGTGTAG---TA??????????????????????????????????????????? 'Ceratocystis cercfabiensis CMW42736_KP727583_Eucalyptus_sp_China_Group_2' CATGTGTGAAC--GTAACC-TATCTTGT------GAAGAGAT--------GGACAAAA-GCTGCTTTGGTAG-TT-------------GGGGGGCAC---------CCTTCTGTAAAGAAGTTTTCTTTC---------------------CCACTAC-------------CAGCAGT-ATAA--GTCA-TCTTCTT-------------CACCACTAAAA-----CTC-TTTTATTTTTT--GTTAGAAATTTGATTTCATTGCTGAGT--GGCATAAACTAT--AAAAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGAACTC-------TTTTTTCTTGGTGTTGGAGGTCCTGTTCTCCCCT--------------GAACAGGCCGCCGAAATGTATCGGCTGTTAT----ACTTG-CCAACTCCCCTGTGTAG---TACAAAA------------TTTTCCAA-TTTTTACACTTTGAAGT 'Ceratocystis cercfabiensis CMW42736_KP727584_Eucalyptus_sp_China_Group_1' CATGTGTGAAC--ATAACC-TATCTTGT------GAAGAGAT--------GAACAAAA-GCTGCTTTGGTAG-TT-------------GGGGGGCAC---------CCTTCTGTAAAGAAGTTTTCTTTC---------------------CCACTAC-------------CAGCAGT-ATAA--GTCA-TCTTCTT-------------TACCACTAAAAA----CTC-TTTTATTTTTT--GTTAGAAATTTGATTTCATTGCTGAGT--GGCATAAACTAT--AAAAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGAACTC--------TTTTTCTTGGTGTTGGAGGTCCTGTTCTCCCCT--------------GAACAGGCCGCCGAAATGCATCGGCTGTTAT----ACTTG-CCAACTCCCCTGTGTAG---TACAAAA------------TTTTCCAA-TTTTTACACTTTGAAGT 'Ceratocystis cercfabiensis CMW42741_KP727586_Eucalyptus_sp_China_Group_2' CATGTGTGAAC--GTAACC-TATCTTGT------GAAGAGAT--------GGACAAAA-GCTGCTTTGGTAG-TT-------------GGGGGGCAC---------CCTTCTGTAAAGAAGTTTTCTTTC---------------------CCACTAC-------------CAGCAGT-ATAA--GTCA-TCTTCTT-------------CACCACTAAAA-----CTC-TTTTGTTTTTT--GTTAGAAATTTGATTTCATTGCTGAGT--GGCATAAACTAT--AAAAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGAACTC-------TTTTTTCTTGGTGTTGGAGGTCCTGTTCTCCCCT--------------GAACAGGCCGCCGAAATGTATCGGCTGTTAT----ACTTG-CCAACTCCCCTGTGTAG---TACAAAA------------TTTTCCAA-TTTTTACACTTTGAAGT 'Ceratocystis cercfabiensis CMW42741_KP727588_Eucalyptus_sp_China_Group_1' CATGTGTGAAC--ATAACC-TATCTTGT------GAAGAGAT--------GAACAAAA-GCTGCTTTGGTAG-TT-------------GGGGGGCAC---------CCTTCTGTAAAGAAGTTTTCTTTC---------------------CCACTAC-------------CAGCAGT-ATAA--GTCA-TCTTCTT-------------TACCACTAAAAA----CTC-TTTTATTTTTT--GTTAGAAATTTGATTTCATTGCTGAGT--GGCATAAACTAT--AAAAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGAACTC--------TTTTTCTTGGTGTTGGAGGTCCTGTTCTCCCCT--------------GAACAGGCCGCCGAAATGCATCGGCTGTTAT----ACTTG-CCAACTCCCCTGTGTAG---TACAAAA------------TTTTCCAA-TTTTTACACTTTGAAGT 'Ceratocystis cercfabiensis CMW42795_KP727583_Eucalyptus_sp_China_Group_2' CATGTGTGAAC--GTAACC-TATCTTGT------GAAGAGAT--------GGACAAAA-GCTGCTTTGGTAG-TT-------------GGGGGGCAC---------CCTTCTGTAAAGAAGTTTTCTTTC---------------------CCACTAC-------------CAGCAGT-ATAA--GTCA-TCTTCTT-------------CACCACTAAAA-----CTC-TTTTATTTTTT--GTTAGAAATTTGATTTCATTGCTGAGT--GGCATAAACTAT--AAAAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGAACTC-------TTTTTTCTTGGTGTTGGAGGTCCTGTTCTCCCCT--------------GAACAGGCCGCCGAAATGTATCGGCTGTTAT----ACTTG-CCAACTCCCCTGTGTAG---TACAAAA------------TTTTCCAA-TTTTTACACTTTGAAGT 'Ceratocystis cercfabiensis CMW43029_KP727592_Eucalyptus_sp_China_Group_2' CATGTGTGAAC--GTAACC-TATCTTGT------GAAGAGAT--------GGACAAAA-GCTGCTTTGGTAG-TT-------------GGGGGGCAC---------CCTTCTGTAAAGAAGTTTTCTTTC---------------------CCACTAC-------------CAGCAGT-ATAA--GTCA-TCTTCTT-------------CACCACTAAAAA----CTC-TTTTATTTTTT--GTTAGAAATTTGATTTCATTGCTGAGT--GGCATAAACTAT--AAAAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAACTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGAACTC-------TTTTTTCTTGGTGTTGGAGGTCCTGTTCTCCCCT--------------GAACAGGCCGCCGAAATGTATCGGCTGTTAT----ACTTG-CCAACTCCCCTGTGTAG---TACAAAA------------TTTTCCAA-TTTTTACACTTTGAAGT 'Ceratocystis cercfabiensis CMW43029_KP727593_Eucalyptus_sp_China_Group_2' CATGTGTGAAC--GTAACC-TATCTTGT------GAAGAGAT--------GGACAAAA-GCTGCTTTGGTAG-TT-------------GGGGGGCAC---------CCTTCTGTAAAGAAGTTTTCTTTC---------------------CCACTAC-------------CAGCAGT-ATAA--GTCA-TCTTCTT-------------CACCACTAAAA-----CTC-TTTTATTTTTT--GTTAGAAATTTGATTTCATTGCTGAGT--GGCATAAACTAT--AAAAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAGTCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGAACTC-------TTTTTTCTTGGTGTTGGAGGTCCTGTTCTCCCCT--------------GAACAGGCCGCCGAAATGTATCGGCTGTTAT----ACTTG-CCAACTCCCCTGTGTAG---TACAAAA------------TTTTCCAA-TTTTTACACTTTGAAGT 'Ceratocystis cercfabiensis CMW43029_KP727594_Eucalyptus_sp_China_Group_2' CATGTGTGAAC--GTAACC-TATCTTGT------GAAGAGAT--------GGACAAAA-GCTGCTTTGGTAG-TT-------------GGGGGGCAC---------CCTTCTGTAAAGAAGTTTTCTTTC---------------------CCACTAC-------------CAGCAGT-ATAA--GTCA-TCTTCTT-------------CACCACTAAAA-----CTC-TTTTATTTTTT--GTTAGAAATTTGATTTCATTGCTGAGT--GGCATAAACTAT--AAAAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGAACTC-------TTTTTTCTTGGTGTTGGAGGTCCTGTTCTCCCCT--------------GAACAGGCCGCCGAAATGTATCGGCTGTTAT----ACTTG-CCAACTCCCCTGTGTAG---TACAAAA------------TTTTCCAA-TTTTTACACTTTGAAGT 'Ceratocystis changhui BPI596161_AY526304_Colocasia_esculenta_China' CATGTGTGAAC--GTAAAC-TATCTTGT------GAAGAGAT--------GAACAAA?-GCTGCCTTGGTAG-TT--------------GGGGGGCC---------CC?TCTATAAGG--------TTTT---------------------CCACTAC-------------CAGCAGT-ATAA--GTAA-TCTTCTT-------------CACCACTAAAAA---CCTC-TTTTATTTTTT--GTTAGAAATTTGATTTCATTGCTGAGT--GGCATAAACTAT--AAAAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGAACTC-------TTTTTTCTTGGTGTTGGAGGTCCTGTTCTCCCCT--------------GAACAGGCCGCCGAAATGTATCGGCTGTTAT----ACTTG-CCAACTCCCCTGTGTAG---TACAAAA------------TTTTCCAA-TTTTTACACTTTGAAGT 'Ceratocystis changhui BPI596162_AY526305_Colocasia_esculenta_China' CATGTGTGAAC--GTAAAC-TATCTTGT------GAAGAGAT--------GAACAAAA-GCTGCCTTGGTAG-TT--------------GGGGGGCC---------CCTTCTATAAGG--------TTTT---------------------CCACTAC-------------CAGCAGT-ATAA--GTAA-TCTTCTT-------------CACCACTAAAAA---CCTC-TTTTATTTTTT--GTTAGAAATTTG?TTTCATTGCTGAGT--GGCATAAACTAT--AAAAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGAACTC-------TTTTTTCTTGGTGTTGGAGGTCCTGTTCTCCCCT--------------GAACAGGCCGCCGAAATGTATCGGCTGTTAT----ACTTG-CCAACTCCCCTGTGTAG---TACAAAA------------TTTTCCAA-TTTTTACACTTTGAAGT 'Ceratocystis changhui CMW43272_KY643886_Colocasia_esculenta_China' CATGTGTGAAC--GTAAAC-TATCTTGT------GAAGAGAT--------GAACAAAA-GCTGCCTTGGTAG-TT--------------GGGGGGCC---------CCTTCTATAAGG--------TTTT---------------------CCACTAC-------------CAGCAGT-ATAA--GTAA-TCTTCTT-------------CACCACTAAAAA---CCTC-TTTTATTTTTT--GTTAGAAATTTGATTTCATTGCTGAGT--GGCATAAACTAT--AAAAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGAACTC-------TTTTTTCTTGGTGTTGGAGGTCCTGTTCTCCCCT--------------GAACAGGCCGCCGAAATGTATCGGCTGTTAT----ACTTG-CCAACTCCCCTGTGTAG---TACAAAA------------TTTTCCAA-TTTTTACACTTTGAAGT 'Ceratocystis changhui PY1_KF963102_Eriobotrya_japonica_China' CATGTGTGAAC--GTAAAC-TATCTTGT------GAAGAGAT--------GAACAAAA-GCTGCCTTGGTAG-TT--------------GGGGGGCC---------CCTTCTATAAGG--------TTTT---------------------CCACTAC-------------CAGCAGT-ATAA--GTAA-TCTTCTT-------------CACCACTAAAAA---CCTC-TTTTATTTTTT--GTTAGAAATTTGATTTCATTGCTGAGT--GGCATAAACTAT--AAAAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGAACTC-------TTTTTTCTTGGTGTTGGAGGTCCTGTTCTCCCCT--------------GAACAGGCCGCCGAAATGTATCGGCTGTTAT----ACTTG-CCAACTCCCCTGTGTAG---TACAAAA------------TTTTCCAA-TTTTTACACTTTGAAGT 'Ceratocystis changhui PY2_KF963101_Eriobotrya_japonica_China' CATGTGTGAAC--GTAAAC-TATCTTGT------GAAGAGAT--------GAACAAAA-GCTGCCTTGGTAG-TT--------------GGGGGGCC---------CCTTCTATAAGG--------TTTT---------------------CCACTAC-------------CAGCAGT-ATAA--GTAA-TCTTCTT-------------CACCACTAAAAA---CCTC-TTTTATTTTTT--GTTAGAAATTTGATTTCATTGCTGAGT--GGCATAAACTAT--AAAAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGAACTC-------TTTTTTCTTGGTGTTGGAGGTCCTGTTCTCCCCT--------------GAACAGGCCGCCGAAATGTATCGGCTGTTAT----ACTTG-CCAACTCCCCTGTGTAG---TACAAAA------------TTTTCCAA-TTTTTACACTTTGAAGT 'Ceratocystis changhui CMW43281_KY643884_Colocasia_esculenta_China' CATGTGTGAAC--GTAAAC-TATCTTGT------GAAGAGAT--------GAACAAAA-GCTGCCTTGGTAG-TT--------------GGGGGGCC---------CCTTCTATAAGG--------TTTT---------------------CCACTAC-------------CAGCAGT-ATAA--GTAA-TCTTCTT-------------CACCACTAAAAA---CCTC-TTTTATTTTTT--GTTAGAAATTTGATTTCATTGCTGAGT--GGCATAAACTAT--AAAAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGAACTC-------TTTTTTCTTGGTGTTGGAGGTCCTGTTCTCCCCT--------------GAACAGGCCGCCGAAATGTATCGGCTGTTAT----ACTTG-CCAACTCCCCTGTGTAG---TACAAAA------------TTTTCCAA-TTTTTACACTTTGAAGT 'Ceratocystis uchidae C1931_AY526308_Xanthosoma__sagittifolium_Fiji' CATGTGTGAAC--GTAAAC-TATCTTGT------GAAGAGAT--------GAACAAAA-GCTGCCTTGGTAG-TT------------GGGGGGGGCC---------CCTTCTATAAGG-------TTTTT---------------------CCACTAC-------------CAGCAGT-ATAA--GTAA-TCTTCTT-------------CACCACTAAAAAA---CTC-TTTTATTTTTT--GTTAGAAATTTGATTTCATTGCTGAGT--GGCATAAACTAT--AAAAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGAACTC-------TTTTTTCTTGGTGTTGGAGGTCCTGTTCTCTCCCCT------------GAACAGGCCGCCGAAATGTATCGGCTGTTAT----ACTTG-CCAACTCCCCTGTGTAG---TACAAAA-----------TTTTTCCAA-TTTTTACACTTTGAAGT 'Ceratocystis uchidae CMW14796_AY526307_Colocasia_esculenta_Hawaii' CATGTGTGAAC--GTAAAC-TATCTTGT------GAAGAGAT--------GAACAAAA-GCTGCCTTGGTAG-TT-------------GGGGGGGCC---------CCTTCTATAAGG-------TTTTT---------------------CCACTAC-------------CAGCAGT-ATAA--GTAA-TCTTCTT-------------CACCACTAAAAA----CTC-TTTTATTTTTT--GTTAGAAATTTGATTTCATTGCTGAGT--GGCATAAACTAT--AAAAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGAACTC-------TTTTTTCTTGGTGTTGGAGGTCCTGTTCTCTCCCCT------------GAACAGGCCGCCGAAATGTATCGGCTGTTAT----ACTTG-CCAACTCCCCTGTGTAG---TACAAAA------------TTTTCCAA-TTTTTACACTTTGAAGT 'Ceratocystis uchidae CMW14804_AY526306_Colocasia_esculenta_Hawaii' CATGTGTGAAC--GTAAAC-TATCTTGT------GAAGAGAT--------GAACAAAA-GCTGCCTTGGTAG-TT-------------GGGGGGGCC---------CCTTCTATAAGG-------TTTTT---------------------CCACTAC-------------CAGCAGT-ATAA--GTAA-TCTTCTT-------------CACCACTAAAAA----CTC-TTTTATTTTTT--GTTAGAAATTTGATTTCATTGCTGAGT--GGCATAAACTAT--AAAAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGAACTC-------TTTTTTCTTGGTGTTGGAGGTCCTGTTCTCTCCCCT------------GAACAGGCCGCCGAAATGTATCGGCTGTTAT----ACTTG-CCAACTCCCCTGTGTAG---TACAAAA------------TTTTCCAA-TTTTTACACTTTGAAGT 'Ceratocystis corymbiicola CMW2939_HM071919_Eucalyptus_pilularis_Australia' CATGTGTGAAC--ATAACC-TATCTTGT------GAAGAGAT--------GAACAAAA-GCTGCTTTGGTAG-TT------------GGGGGGGCAC---------CCTTCTGTAAAGAAGTTTT-CTTTT--------------------CCACTAC-------------CAGCAGT-ATAA--GTCCATCTTCTT-------------TACCACTAAAAA----CTC-TTTTATTTTTT--GTTAGAAATTTGATTTCATTGCTGAGT--GGCATAAACTAT-AAAAAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGAACTC------TTTTTTTCTTGGTGTTGGAGGTCCTGTTCTCCCCT--------------GAACAGGCCGCCGAAATGTATCGGCTGTTAT----ACTTGCCCAACTCCCCTGTGTAG---TACAAAA------------TTTTCCAA-TTTTTACACTTTGAAGT 'Ceratocystis corymbiicola CMW29120_NR119830_Corymbia_variegata_Australia' CATGTGTGAAC--ATAACC-TATCTTGT------GAAGAGAT--------GAACAAAA-GCTGCTTTGGTAG-TT----------GGGGGGGGGCAC---------CCTTCTGTAAAGAAGGTTTTCTTTT--------------------CCACTAC-------------CAGCAGT-ATAA--GTCCATCTTCTT-------------TACCACTAAAAA----CTC-TTTTATTTTTT--GTTAGAAATTTGATTTCATTGCTGAGT--GGCATAAACTAT-AAAAAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGAACTC------TTTTTTTCTTGGTGTTGGAGGTCCTGTTCTCCCCT--------------GAACAGGCCGCCGAAATGTATCGGCTGTTAT----ACTTGCCCAACTCCCCTGTGTAG---TACAAAA------------TTTTCCAA-TTTTTACACTTTGAAGT 'Ceratocystis huliohiae CMW44104_Metrosideros_polymorpha_Hawaii' CATGTGTGAAC--GTAAAC-TATCTTGT------GAAGAGAT--------GAACAAAA-GCTGCCTTGGTAG-TT--------------GGGGGGCC---------CCTTCTATAAGG--------TTTT---------------------CCACTAC-------------CAGCAGT-ATAA--GTAA-TCTTCTT-------------CACCACTAAAA-----CTC-TTTTATTTTTTTTGTTAGAAATTTGATTTCATTGCTGAGT--GGCATAAACTAT--AAAAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGAACTC--------TTTTTCTTGGTGTTGGAGGTCCTGTTCTCCCCT--------------GAACAGGCCGCCGAAATGTATCGGCTGTTAT----ACTTG-CCAACTCCCCTGTGTAG---TACAAAA----------TTTCTTCTAA-TTTTTACACTTTGAAGT 'Ceratocystis huliohiae CMW46716_Metrosideros_polymorpha_Hawaii' CATGTGTGAAC--GTAAAC-TATCTTGT------GAAGAGAT--------GAACAAAA-GCTGCCTTGGTAG-TT--------------GGGGGGCC---------CCTTCTATAAGG--------TTTT---------------------CCACTAC-------------CAGCAGT-ATAA--GTAA-TCTTCTT-------------CACCACTAAAA-----CTC-TTTTATTTTTTTTGTTAGAAATTTGATTTCATTGCTGAGT--GGCATAAACTAT--AAAAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGAACTC--------TTTTTCTTGGTGTTGGAGGTCCTGTTCTCCCCT--------------GAACAGGCCGCCGAAATGTATCGGCTGTTAT----ACTTG-CCAACTCCCCTGTGTAG---TACAAAA----------TTTCTTCTAA-TTTTTACACTTTGAAGT 'Ceratocystis huliohiae CMW46721_Metrosideros_polymorpha_Hawaii' CATGTGTGAAC--GTAAAC-TATCTTGT------GAAGAGAT--------GAACAAAA-GCTGCCTTGGTAG-TT--------------GGGGGGCC---------CCTTCTATAAGG--------TTTT---------------------CCACTAC-------------CAGCAGT-ATAA--GTAA-TCTTCTT-------------CACCACTAAAA-----CTC-TTTTATTTTTTTTGTTAGAAATTTGATTTCATTGCTGAGT--GGCATAAACTAT--AAAAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGAACTC--------TTTTTCTTGGTGTTGGAGGTCCTGTTCTCCCCT--------------GAACAGGCCGCCGAAATGTATCGGCTGTTAT----ACTTG-CCAACTCCCCTGTGTAG---TACAAAA----------TTTCTTCTAA-TTTTTACACTTTGAAGT 'Ceratocystis huliohiae CMW46738_Metrosideros_polymorpha_Hawaii' CATGTGTGAAC--GTAAAC-TATCTTGT------GAAGAGAT--------GAACAAAA-GCTGCCTTGGTAG-TT--------------GGGGGGCC---------CCTTCTATAAGG--------TTTT---------------------CCACTAC-------------CAGCAGT-ATAA--GTAA-TCTTCTT-------------CACCACTAAAA-----CTC-TTTTATTTTTTTTGTTAGAAATTTGATTTCATTGCTGAGT--GGCATAAACTAT--AAAAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGAACTC--------TTTTTCTTGGTGTTGGAGGTCCTGTTCTCCCCT--------------GAACAGGCCGCCGAAATGTATCGGCTGTTAT----ACTTG-CCAACTCCCCTGTGTAG---TACAAAA----------TTTCTTCTAA-TTTTTACACTTTGAAGT 'Ceratocystis huliohiae CMW47135_KY809155_Metrosideros_polymorpha_Hawaii' CATGTGTGAAC--GTAAAC-TATCTTGT------GAAGAGAT--------GAACAAAA-GCTGCCTTGGTAG-TT--------------GGGGGGCC---------CCTTCTATAAGG--------TTTT---------------------CCACTAC-------------CAGCAGT-ATAA--GTAA-TCTTCTT-------------CACCACTAAAA-----CTC-TTTTATTTTTTTTGTTAGAAATTTGATTTCATTGCTGAGT--GGCATAAACTAT--AAAAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGAACTC--------TTTTTCTTGGTGTTGGAGGTCCTGTTCTCCCCT--------------GAACAGGCCGCCGAAATGTATCGGCTGTTAT----ACTTG-CCAACTCCCCTGTGTAG---TACAAAA----------TTTCTTCTAA-TTTTTACACTTTGAAGT 'Ceratocystis huliohiae CMW47143_Metrosideros_polymorpha_Hawaii' CATGTGTGAAC--GTAAAC-TATCTTGT------GAAGAGAT--------GAACAAAA-GCTGCCTTGGTAG-TT--------------GGGGGGCC---------CCTTCTATAAGG--------TTTT---------------------CCACTAC-------------CAGCAGT-ATAA--GTAA-TCTTCTT-------------CACCACTAAAA-----CTC-TTTTATTTTTTTTGTTAGAAATTTGATTTCATTGCTGAGT--GGCATAAACTAT--AAAAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGAACTC--------TTTTTCTTGGTGTTGGAGGTCCTGTTCTCCCCT--------------GAACAGGCCGCCGAAATGTATCGGCTGTTAT----ACTTG-CCAACTCCCCTGTGTAG---TACAAAA----------TTTCTTCTAA-TTTTTACACTTTGAAGT 'Ceratocystis huliohiae CMW47149_KY809156_Metrosideros_polymorpha_Hawaii' CATGTGTGAAC--GTAAAC-TATCTTGT------GAAGAGAT--------GAACAAAA-GCTGCCTTGGTAG-TT--------------GGGGGGCC---------CCTTCTATAAGG--------TTTT---------------------CCACTAC-------------CAGCAGT-ATAA--GTAA-TCTTCTT-------------CACCACTAAAA-----CTC-TTTTATTTTTTTTGTTAGAAATTTGATTTCATTGCTGAGT--GGCATAAACTAT--AAAAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGAACTC--------TTTTTCTTGGTGTTGGAGGTCCTGTTCTCCCCT--------------GAACAGGCCGCCGAAATGTATCGGCTGTTAT----ACTTG-CCAACTCCCCTGTGTAG---TACAAAA----------TTTCTTCTAA-TTTTTACACTTTGAAGT 'Ceratocystis polychroma CMW11436_AY528971_Syzygium_aromaticum_Indonesia' CATGTGTGAAC--GTAACT-TATCTTGT------GAAGAGAT--------GAACAAAAAGCTGCTTTGGTAG-TT----------GGGGGGGGGCAC---------CCTTCTGTAAAGAAGTTTTCTTTC---------------------CCACTAC-------------CAGCAGT-ATAA--GTCA-TCTTCTT-------------TACCACTAAAAA----CTCTTTTTATTTTTT--GTTAGAAATTTGATTTCATTGCTGAGT--GGCATAAACTAT-AAAAAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGAACTC-------TTTTTTCTTGGTGTTGGAGGTCCTGTTCTCCCCT--------------GAACAGGCCGCCGAAATGTATCGGCTGTTAT----ACTTG-CCAACTCCCCTGTGTAG---TATAAAA------------TTTTCCAA-TTTTTACACTTTGAAGT 'Ceratocystis polychroma CMW11449_AY528972_Syzygium_aromaticum_Indonesia' CATGTGTGAAC--GTAACT-TATCTTGT------GAAGAGAT--------GAACAAAAAGCTGCTTTGGTAG-TT----------GGGGGGGGGCAC---------CCTTCTGTAAAGAAGTTTTCTTTC---------------------CCACTAC-------------CAGCAGT-ATAA--GTCA-TCTTCTT-------------TACCACTAAAAA----CTCTTTTTATTTTTT--GT-AGAAATTTGATTTCATTGCTGAGT--GGCATAAACTAT-AAAAAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGAACTC-------TTTTTTCTTGGTGTTGGAGGTCCTGTTCTCCCCT--------------GAACAGGCCGCCGAAATGTATCGGCTGTTAT----ACTTG-CCAACTCCCCTGTGTAG---TATAAAA------------TTTTCCAA-TTTTTACACTTTGAAGT 'Ceratocystis polychroma CMW11424_AY528970_Syzygium_aromaticum_Indonesia' CATGTGTGAAC--GTAACT-TATCTTGT------GAAGAGAT--------GAACAAAAAGCTGCTTTGGTAG-TT----------GGGGGGGGGCAC---------CCTTCTGTAAAGAAGTTTTCTTTC---------------------CCACTAC-------------CAGCAGT-ATAA--GTCA-TCTTCTT-------------TACCACTAAAAA----CTCTTTTTATTTTTT--GTTAGAAATTTGATTTCATTGCTGAGT--GGCATAAACTAT-AAAAAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGAACTC-------TTTTTTCTTGGTGTTGGAGGTCCTGTTCTCCCCT--------------GAACAGGCCGCCGAAATGTATCGGCTGTTAT----ACTTG-CCAACTCCCCTGTGTAG---TATAAAA------------TTTTCCAA-TTTTTACACTTTGAAGT 'Ceratocystis obpyriformis CMW23807_EU245004_Acacia_mearnsii_South_Africa' CATTTGTGAAC--GTTACC-TATCTTGT------ACTGAGAT----GAATAAACAATATGCTGCTTTGGTAG-TT------------GGGGGGGGGGAGAGCTCCGCCTTGGGTGAAGTTTTTTTCTTTT---------------------CCACTAC-------------CAGCAGT-ATAAAAGTAGTTTTCTCTT------------TACCACTAAAAAA---CTC--TTTAATATTTTT-ATAGAAATTTGATTTCATTGCTGAGTGAAGCATAAA--AT-AATAAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAAAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTACTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGAACTA--------TTTTTCTTGGTGTTGGAGGTCCTGTTCTTCT----------------GAGCAGGCCGCCGAAATGTATCGGCTGTTAA----ACTTG-CCAACTCCCCTGTGTAG---TA??????????????????????????????????????????? 'Ceratocystis obpyriformis CMW23808_EU245003_Acacia_mearnsii_South_Africa' CATTTGTGAAC--GTTACC-TATCTTGT------ACTGAGAT----GAATAAACAATATGCTGCTTTGGTAG-TT------------GGGGGGGGGGAGAGCTCCGCCTTGGGTGAAGTTTTTTTCTTTT---------------------CCACTAC-------------CAGCAGT-ATAAAAGTAGTTTTCTCTT------------TACCACTAAAAAA---CTC--TTTAATATTTTT-ATAGAAATTTGATTTCATTGCTGAGTGAAGCATAAA--AT-AATAAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAAAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTACTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGAACTA--------TTTTTCTTGGTGTTGGAGGTCCTGTTCTTCT----------------GAGCAGGCCGCCGAAATGTATCGGCTGTTAA----ACTTG-CCAACTCCCCTGTGTAG---TA??????????????????????????????????????????? 'Ceratocystis pirilliformis CMW6569_AF427104_Eucalyptus_nitens_Australia' CATTTGTGAAC--GTTACC-TATCTTGT------ACTGAGAT----GAATAAACAATATGCTGCTTTGGTAG-TT------------GGGGGGGGGGAGAGCTCCGCCTTGTGTGAAGTTTTTTTCTTTT---------------------CCACTAC-------------CAGCAGT-ATAAAAGTAGTTTTCTCTT------------TACCACTAAAAAA---CTC--TTTAATATTTTT-ATAGA--TTTGATTTCATTGCTGAGT--GGCATAA-CTAT-AAAAAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTACTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGAACTA-------TTTTTTCTTGGTGTTGGAGGTCCTGTTCTTCT----------------GAGCAGGCCGCCGAAATGTATCGGCTGTTAA----ACTTG-CCAACTCCCCTGTGTAG---TATAAAGGAATAATTTTTTTTTTCCAATTTTTTACATTTTGAAGT 'Ceratocystis pirilliformis CMW6579_NR119452_Eucalyptus_nitens_Australia' CATTTGTGAAC--GTTACC-TATCTTGT------ACTGAGAT----GAATAAACAATATGCTGCTTTGGTAG-TT-------------GGGGGGGGGAGAGCTCCGCCTTGTGTGAAGTTTTTTTCTTTT---------------------CCACTAC-------------CAGCAGT-ATAAAAGTAGTTTTCTCTT------------TACCACTAAAAAAA--CTC--TTTAATATTTTT-ATAGAAATTTGATTTCATTGCTGAGTGAAGCATAAA--AT-AATAAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTACTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGAACTA--------TTTTTCTTGGTGTTGGAGGTCCTGTTCTTCT----------------GAGCAGGCCGCCGAAATGTATCGGCTGTTAA----ACTTG-CCAACTCCCCTGTGTAG---TATAAAGGAATAATTTTTTTTTTCCAATTTTTTACATTTTGAAGT 'Ceratocystis polyconidia CMW23818_EU245007_Acacia_mearnsii_South_Africa' CATTTGTGAAC--GTTACC-TATCTTGT------ACTGAGAT----GAATAAACAATATGCTGCTTTGGTAG-TT-------------GGGGGGGGGAGAGCTCCGCCTTGTGTGAAGTTTTTTTCTTTT---------------------CCACTAC-------------CAGCAGT-ATAAAAGTAGTTTTCTCTT------------TACCACTAAAAAA---CTC--TTTAATATTTTT-ATAGAAATTTGATTTCATTGCTGAGTGAAGCATAAA--AT-AATAAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCCCCTTGCGCCTGGCAGTACTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGAACTA-------TTTTTTCTTGGTGTTGGAGGTCCTGTTCTTCT----------------GAGCAGGCCGCCGAAATGTATCGGCTGTTAA----ACTTG-CCAACTCCCCTGTGTAG---TA??????????????????????????????????????????? 'Ceratocystis polyconidia CMW23809_EU245006_Acacia_mearnsii_South_Africa' CATTTGTGAAC--GTTACC-TATCTTGT------ACTGAGAT----GAATAAACAATATGCTGCTTTGGTAG-TT-------------GGGGGGGGGAGAGCTCCGCCTTGTGTGAAGTTTTTTTCTTTT---------------------CCACTAC-------------CAGCAGT-ATAAAAGTAGTTTTCTCTT------------TACCACTAAAAAA---CTC--TTTAATATTTTT-ATAGAAATTTGATTTCATTGCTGAGTGAAGCATAAA--AT-AATAAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCCCCTTGCGCCTGGCAGTACTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGAACTA-------TTTTTTCTTGGTGTTGGAGGTCCTGTTCTTCT----------------GAGCAGGCCGCCGAAATGTATCGGCTGTTAA----ACTTG-CCAACTCCCCTGTGTAG---TA??????????????????????????????????????????? 'Ceratocystis ficicola CMW38544_Ficus_carica_Japan' CATGTGTGAAC--GTAAACGTATCTTGTA-----ATTAAGAT--------AAGAGATATGCTGCTTTGGTAG-TT--------------GGGGGAGTTCC------CCTTCTATAAGG---TTTTCTTTTC--------------------CCACTAC-------------CAGCAGT-ATAA------TTCTTCTTTTTTT--------TACCACTAAAAA----CTCTTTTTTTATTTTTTGTTAGAAATTTGATTTCATTGCTGAGT--GGCATAAACTAT---AAAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGAACTG----TTTTTTTTTCTTGGTGTTGGAGGTCCTGTTCTTCACT--------------GAACAGGCCGCCGAAATGCATCGGCTGTTCT----ACTTG-CCAGCTCCCCTGTGTAG---TACAAAA-----------TTTTTACAA-TTTTTACACTTTGAAGC 'Ceratocystis ficicola CMW38543_NR119410_Ficus_carica_Japan' CATGTGTGAAC--GTAAACGTATCTTGTA-----ATTAAGAT--------AAGAGATATGCTGCTTTGGTAG-TT--------------GGGGGAGTTCC------CCTTCTATAAGG---TTTTCTTTTC--------------------CCACTAC-------------CAGCAGT-ATAA------TTCTTCTTTTTTT--------TACCACTAAAAA----CTCTTTTTTTATTTTTTGTTAGAAATTTGATTTCATTGCTGAGT--GGCATAAACTAT---AAAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGAACTG----TTTTTTTTTCTTGGTGTTGGAGGTCCTGTTCTTCACT--------------GAACAGGCCGCCGAAATGCATCGGCTGTTCT----ACTTG-CCAGCTCCCCTGTGTAG---TACAAAA-----------TTTTTACAA-TTTTTACACTTTGAAGC 'Ceratocystis collisensis CMW42554_KP727580_Cunninghamia_lanceolata_China' CCTTTGTGA-CTAGTAAAC-CCCCCTCTAGTGGTATAGAGATATGGGGGGG-ATAGTGTGCTGTTTTGGTAG-T-GTGGGTGAGTTTAGGGGGGGGGGGGGGTGGACCTTCTGTAAGGCAGGTCTTTTTCGCC---TCTATCTCTCTCTCTCCACTAC-------------CAGCAGT-AT---------TCTTCCTCCACAAGTCTCGCTACCACTATCACTTAACTC---TTAATATTTTTTT-AGA----TG-TTTCATTGCTGAGT--GGCATAA-CTAT-AAAAAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGACCAC---------TGTTCTTGGTGTTGGAGGTCCTGTTCTCTTTT-CCTTCTGGAAAAAATACAGGCCGCCGAAATGCATCGGCTGTTAT----ACTTGCCCAACTCCCCTGTGTAGTAGTATAAAA------------------------TTACACTTTGTAGT 'Ceratocystis collisensis CMW42552_KP727578_Cunninghamia_lanceolata_China' CCTTTGTGA-CTAGTAAAC-CCCCCTCTAGTGGTATAGAGATATGGGGGGG-ATAGTGTGCTGTTTTGGTAG-T-GTGGGTGAGTTTAGGGGGGGGGGGGGGTGGACCTTCTGTAAGGCAGGTCTTTTTCGCC---TCTATCTCTCTCTCTCCACTAC-------------CAGCAGT-AT---------TCTTCCTCCACAAGTCTCGCTACCACTATCACTTAACTC---TTAATATTTTTTT-AGA----TG-TTTCATTGCTGAGT--GGCATAA-CTAT-AAAAAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGACCAC---------TGTTCTTGGTGTTGGAGGTCCTGTTCTCTTTT-CCTTCTGGAAAAAATACAGGCCGCCGAAATGCATCGGCTGTTAT----ACTTGCCCAACTCCCCTGTGTAGTAGTATAAAA------------------------TTACACTTTGTAGT 'Ceratocystis larium CMW25435_EU881907_Styrax_benzoin_Indonesia' CATTTGTGAACTAGTAAAC-CCCCCTCTAGTGGTATAGAGATATGGGGGGGAATAGTGTGCTGTTTTGGTAG-T-GTTGAGGGGGTTAAGTTAGGGGGG-AATGGACCTTCTGTAAGGCCAGTCTTTTTCGCTCTATCTCTCTCTCTCTCTCCGCTAC-------------CAGCAGT-AT---------TCTTCCTCCACAAGTCTCGCTACCACTCTCACTTAACTC---TTAATATTTTTTT-AGA----TG-TTTCATTGCTGAGT--GGCATAA-CTAT-AAAAAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGACCAC---------TGTTCTTGGCGTTGGAGGTCCTGTTCTCTTTTTCCTTCTGGAAAAAATACAGGCCACCGAAATGCATCGGCTGTTAT----ACTTGCCCAACTCCCCTGTGTAG---TACAAGA------------TTTTTTAAATTTTTACGCTTTGGAGT 'Ceratocystis larium CMW25434_NR137016_Styrax_benzoin_Indonesia' CATTTGTGAACTAGTAAAC-CCCCCTCTAGTGGTATAGAGATATGGGGGGGAATAGTGTGCTGTTTTGGTAG-T-GTAGAGGGGGTTAAGTTAGGGGGG-AATGGACCTTCTGTAAGGCAGGTCTTTTTCGCTCTATCTCTCTCTCTCTCTCCGCTAC-------------CAGCAGT-AT---------TCTTCCTCCACAAGTCTCGCTACCACTCTCACTTAACTC---TTAATATTTTTTT-AGA----TG-TTTCATTGCTGAGT--GGCATAA-CTAT-AAAAAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGACCAC---------TGTTCTTGGCGTTGGAGGTCCTGTTCTCTTTTTCCTTCTGGAAAAAATACAGGCCACCGAAATGCATCGGCTGTTAT----ACTTGCCCAACTCCCCTGTGTAG---TACAAGA------------TTTTTTAAATTTTTACGCTTTGGAGT 'Ceratocystis fimbriata CMW14799_KC493160_Ipomoea_batatas_North_Carolina_USA' CATGTGTGAAC--GTACC--TATCTTGT------AGTGAGAT--------GAAT-----GCTGTTTTGGTGG-T----------------AGGGC-----------CCTTCTGAAGGGAGGGCA---------------------------CCGCTGC-------------CAGCAGT-AT-T-------------------AGTCTCACCACTA-TAAA------CTC--TTTTATTATTTT-CTAGA-----TTTTTCATTGCTGAGT--GGCATAA-CTATAAAAAAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGATTAT--------TCTTTCTTGGCGTTGGAGGTCCTGTTCTCCCCT--------------GAACAGGCCGCCGAAATGCATCGGCTGTTAT----ACTTG-CCAACTCCCCTGTGTAG---TATAAAA--------------TTTCTAATTTTTACACTTTGAAGT 'Ceratocystis fimbriata CMW1547_AF264904_Ipomoea_batatas_Papua_New_Guinea' CATGTGTGAAC--GTACC--TATCTTGT------AGTGAGAT--------GAAT-----GCTGTTTTGGTGG-T----------------AGGGC-----------CCTTCTGAAGGGAGGGCA---------------------------CCGCTGC-------------CAGCAGT-AT-T-------------------AGTCTCACCACTA-TAAA------CTC--TTTTATTATTTT-CTAGA-----TTTTTCATTGCTGAGT--GGCATAA-CTATAAAAAAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGATTAT--------TCTTTCTTGGCGTTGGAGGTCCTGTTCTCCCCT--------------GAACAGGCCGCCGAAATGCATCGGCTGTTAT----ACTTG-CCAACTCCCCTGTGTAG---TATAAAA--------------TTTCTAATTTTTACACTTTGAAGT 'Ceratocystis lukuohia CMW44102_KP203957_Metrosideros_polymorpha_Hawaii_Group_1' CATGTGTGAAC--ATACC--TATCTTGT------AGTGAGAT--------GAATT----GCTGTTTTGGTGG-T----------------AGGGC-----------CCTTCTGAAGGGTA-------------------------------CCGCTGC-------------CAGCAGT-ATAT------------------AAGTCTCGCCACTG-TAAA------CTC----TTACTATTTT-CTTAA------TTTTCATTGCTGAGT--GGCATAA-CTAT-AAAAAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGGACTCC------TTTGTTCTTGGCGTTGGAGGTCCTGTTCTCCCCT--------------GAACAGGCCGCCGAAATGTATCGGCTGTTAT----ACTTG-CCAACTCCCCTGTGTAG---TATAAAA--------------TTTCTAATTTTTACACTTTGAAGT 'Ceratocystis lukuohia CMW46741_KY809158_Metrosideros_polymorpha_Hawaii_Group_2' CATGTGTGAAC--ATACC--TATCTTGT------AGTGAGAT--------GAATT----GCTGTTTTGGTGG-T----------------AGGGC-----------CCTTCTGAAGGGCA-------------------------------CCGCTGC-------------CAGCAGT-ATAT------------------AAGTCTCGCCACTG-TAAA------CTC----TTACTATTTT-CTTAA------TTTTCATTGCTGAGT--GGCATAA-CTAT-AAAAAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGGACTCC-----TTTTGTTCTTGGCGTTGGAGGTCCTGTTCTCCCCT--------------GAACAGGCCGCCGAAATGTATCGGCTGTTAT----ACTTG-CCAACTCCCCTGTGTAG---TATAAAA--------------TTTCTAATTTTTACACTTTGAAGT 'Ceratocystis albifundus CMW4068_DQ520638_Acacia_mearnsii_South_Africa' CATGTGTGAAC--ATACCC-TGTCTTTT------GGTGA-----------AGACGGAAAGCTGCCTTGGTGGGT----------GTCTGTAGTGGTGTTAACCT--CTTTTTATAAGG-GGGCAGC-------------------------CCACTACCGCTAGCCACCAGCAGCA-T---------------------ACAAGTCTTTTACCAC-TATAAA---CCTTC--TGTATATTTTTT---AAAATTTTTAAAAATTGCTGAGT--GGCATAA-CTATAAAAAAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGACTTGC------TTTAGTTTTGGTGTTGGAGGTCCTGTTCTTACCCTTCC----------GAACAGGCCGCCGAAATGCATCGGCTGTTATTTTTACTTG-CCAACTCCCCTGTGTAG---TACAAGA------------TTTTTTAAATTTTTACGCTTTGGAGT ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 630; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 630; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 630; END; BEGIN TREES; Title 'Ceratocystis ITS Asian-Australian'; ID 0160111017f85; LINK Taxa = Taxa; TRANSLATE [0] 1 'Ceratocystis atrox CMW19383_EF070414_Eucalyptus_grandis_Australia', [1] 2 'Ceratocystis atrox CMW19385_NR136981_Eucalyptus_grandis_Australia', [2] 3 'Ceratocystis cercfabiensis CMW42736_KP727583_Eucalyptus_sp_China_Group_2', [3] 4 'Ceratocystis cercfabiensis CMW42736_KP727584_Eucalyptus_sp_China_Group_1', [4] 5 'Ceratocystis cercfabiensis CMW42741_KP727586_Eucalyptus_sp_China_Group_2', [5] 6 'Ceratocystis cercfabiensis CMW42741_KP727588_Eucalyptus_sp_China_Group_1', [6] 7 'Ceratocystis cercfabiensis CMW42795_KP727583_Eucalyptus_sp_China_Group_2', [7] 8 'Ceratocystis cercfabiensis CMW43029_KP727592_Eucalyptus_sp_China_Group_2', [8] 9 'Ceratocystis cercfabiensis CMW43029_KP727593_Eucalyptus_sp_China_Group_2', [9] 10 'Ceratocystis cercfabiensis CMW43029_KP727594_Eucalyptus_sp_China_Group_2', [10] 11 'Ceratocystis changhui BPI596161_AY526304_Colocasia_esculenta_China', [11] 12 'Ceratocystis changhui BPI596162_AY526305_Colocasia_esculenta_China', [12] 13 'Ceratocystis changhui CMW43272_KY643886_Colocasia_esculenta_China', [13] 14 'Ceratocystis changhui PY1_KF963102_Eriobotrya_japonica_China', [14] 15 'Ceratocystis changhui PY2_KF963101_Eriobotrya_japonica_China', [15] 16 'Ceratocystis changhui CMW43281_KY643884_Colocasia_esculenta_China', [16] 17 'Ceratocystis uchidae C1931_AY526308_Xanthosoma__sagittifolium_Fiji', [17] 18 'Ceratocystis uchidae CMW14796_AY526307_Colocasia_esculenta_Hawaii', [18] 19 'Ceratocystis uchidae CMW14804_AY526306_Colocasia_esculenta_Hawaii', [19] 20 'Ceratocystis corymbiicola CMW2939_HM071919_Eucalyptus_pilularis_Australia', [20] 21 'Ceratocystis corymbiicola CMW29120_NR119830_Corymbia_variegata_Australia', [21] 22 'Ceratocystis huliohiae CMW44104_Metrosideros_polymorpha_Hawaii', [22] 23 'Ceratocystis huliohiae CMW46716_Metrosideros_polymorpha_Hawaii', [23] 24 'Ceratocystis huliohiae CMW46721_Metrosideros_polymorpha_Hawaii', [24] 25 'Ceratocystis huliohiae CMW46738_Metrosideros_polymorpha_Hawaii', [25] 26 'Ceratocystis huliohiae CMW47135_KY809155_Metrosideros_polymorpha_Hawaii', [26] 27 'Ceratocystis huliohiae CMW47143_Metrosideros_polymorpha_Hawaii', [27] 28 'Ceratocystis huliohiae CMW47149_KY809156_Metrosideros_polymorpha_Hawaii', [28] 29 'Ceratocystis polychroma CMW11436_AY528971_Syzygium_aromaticum_Indonesia', [29] 30 'Ceratocystis polychroma CMW11449_AY528972_Syzygium_aromaticum_Indonesia', [30] 31 'Ceratocystis polychroma CMW11424_AY528970_Syzygium_aromaticum_Indonesia', [31] 32 'Ceratocystis obpyriformis CMW23807_EU245004_Acacia_mearnsii_South_Africa', [32] 33 'Ceratocystis obpyriformis CMW23808_EU245003_Acacia_mearnsii_South_Africa', [33] 34 'Ceratocystis pirilliformis CMW6569_AF427104_Eucalyptus_nitens_Australia', [34] 35 'Ceratocystis pirilliformis CMW6579_NR119452_Eucalyptus_nitens_Australia', [35] 36 'Ceratocystis polyconidia CMW23818_EU245007_Acacia_mearnsii_South_Africa', [36] 37 'Ceratocystis polyconidia CMW23809_EU245006_Acacia_mearnsii_South_Africa', [37] 38 'Ceratocystis ficicola CMW38544_Ficus_carica_Japan', [38] 39 'Ceratocystis ficicola CMW38543_NR119410_Ficus_carica_Japan', [39] 40 'Ceratocystis collisensis CMW42554_KP727580_Cunninghamia_lanceolata_China', [40] 41 'Ceratocystis collisensis CMW42552_KP727578_Cunninghamia_lanceolata_China', [41] 42 'Ceratocystis larium CMW25435_EU881907_Styrax_benzoin_Indonesia', [42] 43 'Ceratocystis larium CMW25434_NR137016_Styrax_benzoin_Indonesia', [43] 44 'Ceratocystis fimbriata CMW14799_KC493160_Ipomoea_batatas_North_Carolina_USA', [44] 45 'Ceratocystis fimbriata CMW1547_AF264904_Ipomoea_batatas_Papua_New_Guinea', [45] 46 'Ceratocystis lukuohia CMW44102_KP203957_Metrosideros_polymorpha_Hawaii_Group_1', [46] 47 'Ceratocystis lukuohia CMW46741_KY809158_Metrosideros_polymorpha_Hawaii_Group_2', [47] 48 'Ceratocystis albifundus CMW4068_DQ520638_Acacia_mearnsii_South_Africa'; TREE 'ITS Ceratocystis Asian-Australian clade' = (((((((17:2,18:0.0,19:0.0):4,((22:0.0,23:0.0,24:0.0,25:0.0,26:0.0,27:0.0,28:0.0):7,12:0.0,13:0.0,14:0.0,15:0.0,16:0.0,11:0.0):2):8,((3:0.0,5:1,7:0.0,8:1,9:1,10:0.0):1,((4:0.0,6:0.0):3,((29:0.0,30:1,31:0.0):4,((20:3,21:1):8,(1:1,2:1):15):1):4):1):8):12,((((36:0.0,37:0.0):2,((32:0.0,33:0.0):3,35:0.0):1):6,34:4):53,(38:0.0,39:0.0):35):9):38,((40:0.0,41:0.0):26,(42:3,43:0.0):18):95):27,((44:0.0,45:0.0):14,(46:1,47:1):15):29):63,48:38); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1527422363035; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 4902633391215680986; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 4396056655484616857; mqVersion 340; checksumv 0 3 3481021412 null getNumChars 630 numChars 630 getNumTaxa 48 numTaxa 48 short true bits 15 states 15 sumSquaresStatesOnly 577135.0 sumSquares 577135.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1 errorReportedDuringRun; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 212; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1066 696; setLocation 0 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #4902633391215680986 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 0160111017f85; toggleUseWeights off; endTell; setAssignedID 14008.1527422347081.7934712549280749606; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 854 624; setLocation 0 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientRight; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; toggleShow consensusFrequency; toggleShow bootstrapFrequency; toggleShow posteriorProbability; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; setDigits 4; setThreshold ?; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #4396056655484616857 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 415; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 854 624; setLocation 0 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; getWindow; tell It; forceAutosize; endTell; hideWindow; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;