#NEXUS [written Fri Dec 22 11:08:29 CET 2017 by Mesquite version 3.31 (build 859) at 228net115.unica.it/193.206.228.115] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=27; TAXLABELS callithrix_jacchus_ERV1_1_gag_consensus harlequin_gag hepsi1_gag hepsi2_gag hepsi3_gag herv1_gag herv30_gag herv3_gag herv9_gag hervadp_gag herve_gag hervfa_gag hervfb_gag hervfc_gag hervfrd_gag hervh48_gag HERVH_c41gag hervh_gag hervI_gag hervt_gag HERVW_gag_consensus mer34_gag mer50_gag mer52_gag pabl_gag prima41_gag saimiri_boliviensis_ERV1_1_gag_consensus ; END; BEGIN TREES; Title Imported_trees; ID 015fe89642ec1; LINK Taxa = Taxa; TRANSLATE [0] 1 callithrix_jacchus_ERV1_1_gag_consensus, [1] 2 harlequin_gag, [2] 3 hepsi1_gag, [3] 4 hepsi2_gag, [4] 5 hepsi3_gag, [5] 6 herv1_gag, [6] 7 herv30_gag, [7] 8 herv3_gag, [8] 9 herv9_gag, [9] 10 hervadp_gag, [10] 11 herve_gag, [11] 12 hervfa_gag, [12] 13 hervfb_gag, [13] 14 hervfc_gag, [14] 15 hervfrd_gag, [15] 16 hervh48_gag, [16] 17 HERVH_c41gag, [17] 18 hervh_gag, [18] 19 hervI_gag, [19] 20 hervt_gag, [20] 21 HERVW_gag_consensus, [21] 22 mer34_gag, [22] 23 mer50_gag, [23] 24 mer52_gag, [24] 25 pabl_gag, [25] 26 prima41_gag, [26] 27 saimiri_boliviensis_ERV1_1_gag_consensus; TREE Imported_tree_1 = (((((((((27:0.00638623,1:0.01358734):0.18708024[%bootstrapFrequency = 1 ],9:0.15089308):0.04717389[%bootstrapFrequency = 0.37 ],7:0.25818301):0.0320277[%bootstrapFrequency = 0.22 ],21:0.11037271):0.20786303[%bootstrapFrequency = 1 ],24:0.66887427):0.26121131[%bootstrapFrequency = 1 ],(14:0.53544783,((17:0.04050325,18:0.12259006):0.42754675[%bootstrapFrequency = 1 ],(13:0.38783953,(12:0.38380565,16:0.27515188):0.0685516[%bootstrapFrequency = 0.49 ]):0.05900719[%bootstrapFrequency = 0.68 ]):0.07383924[%bootstrapFrequency = 0.5 ]):0.17285668[%bootstrapFrequency = 1 ]):0.08436962[%bootstrapFrequency = 0.56 ],(26:0.61231914,15:0.74185765):0.11463286[%bootstrapFrequency = 0.69 ]):0.24923535[%bootstrapFrequency = 1 ],(25:0.84039463,(10:1.00273219,(20:0.35706612,((2:0.20816196,11:0.06896721):0.30770262[%bootstrapFrequency = 1 ],(6:0.56038851,(19:0.32658604,8:0.29153721):0.0718271[%bootstrapFrequency = 0.82 ]):0.18536476[%bootstrapFrequency = 0.92 ]):0.23788032[%bootstrapFrequency = 0.93 ]):0.21106179[%bootstrapFrequency = 1 ]):0.13141453[%bootstrapFrequency = 0.62 ]):0.11612927[%bootstrapFrequency = 0.51 ]):0.05998133[%bootstrapFrequency = 0.78 ],((22:0.87240175,23:1.02029572):0.20216146[%bootstrapFrequency = 0.77 ],(3:0.99533887,(5:0.81880963,4:0.89367405):0.21807735[%bootstrapFrequency = 0.82 ]):0.27887378[%bootstrapFrequency = 0.96 ]):0.11159533[%bootstrapFrequency = 0.78 ]); END; BEGIN NOTES; SUT TAXON = 1 NAME = color INTEGER = 5; SUT TAXON = 21 NAME = color INTEGER = 14; SUT TAXON = 27 NAME = color INTEGER = 5; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1513937309069; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 3572493056716895553; tell It; setDefaultOrder 1 17 24 26 25 19 3 21 2 15 18 10 9 6 13 11 7 8 20 16 4 22 23 5 14 12 0; attachments ; endTell; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 615 627; setLocation 755 216; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #3572493056716895553 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #3572493056716895553; getWindow; tell It; useTargetValue off; setTargetValue ; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; getTable; tell It; rowNamesWidth 435; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 515 555; setLocation 755 216; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.arrow; endTell; setActive; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #3572493056716895553 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 015fe89642ec1; toggleUseWeights off; endTell; setAssignedID 1027.1511435863060.7063267071766201198; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 515 555; setLocation 755 216; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.ColorBranches.ColorToolExtra.ColorBranches; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale off; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 3; showEdgeLines on; orientRight; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setFont Helvetica; setFontSize 12; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '(((((((((27:0.00638623,1:0.01358734):0.18708024,9:0.15089308):0.04717389,7:0.25818301):0.0320277,21:0.11037271):0.20786303,24:0.66887427):0.26121131,(14:0.53544783,((17:0.04050325,18:0.12259006):0.42754675,(13:0.38783953,(12:0.38380565,16:0.27515188):0.0685516):0.05900719):0.07383924):0.17285668):0.08436962,(26:0.61231914,15:0.74185765):0.11463286):0.24923535,(25:0.84039463,(10:1.00273219,(20:0.35706612,((2:0.20816196,11:0.06896721):0.30770262,(6:0.56038851,(19:0.32658604,8:0.29153721):0.0718271):0.18536476):0.23788032):0.21106179):0.13141453):0.11612927):0.05998133,((22:0.87240175,23:1.02029572):0.20216146,(3:0.99533887,(5:0.81880963,4:0.89367405):0.21807735):0.27887378):0.11159533);'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Blue; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; setDigits 4; setThreshold ?; writeAsPercentage on; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;