#NEXUS
[written Fri Dec 22 11:16:35 CET 2017 by Mesquite  version 3.31 (build 859) at 228net115.unica.it/193.206.228.115]

BEGIN TAXA;
	TITLE Taxa;
	DIMENSIONS NTAX=33;
	TAXLABELS
		callithrix_jacchus_ERV1_1_pol_consensus harlequin_pol harlequin_pol2 harlequin_pol3 hepsi1_pol hepsi2_pol hepsi2_pol2 hepsi3_pol hepsi4_pol herv1_pol herv30_pol herv3_pol herv9_pol hervadp_pol herve_pol hervfa_pol hervfb_pol hervfc_pol hervfrd_pol hervh48_pol HERVH_c41pol hervh_pol hervI_pol hervt_pol HERVW_pol_consensus mer34_pol mer50_pol mer52_pol mer57_pol mer89_pol pabl_pol prima41_pol saimiri_boliviensis_ERV1_1_pol_consensus 
	;

END;


BEGIN TREES;
	Title Imported_trees;
	ID 015fee56ee6810;
	LINK Taxa = Taxa;
	TRANSLATE
[0] 		1 callithrix_jacchus_ERV1_1_pol_consensus,
[1] 		2 harlequin_pol,
[2] 		3 harlequin_pol2,
[3] 		4 harlequin_pol3,
[4] 		5 hepsi1_pol,
[5] 		6 hepsi2_pol,
[6] 		7 hepsi2_pol2,
[7] 		8 hepsi3_pol,
[8] 		9 hepsi4_pol,
[9] 		10 herv1_pol,
[10] 		11 herv30_pol,
[11] 		12 herv3_pol,
[12] 		13 herv9_pol,
[13] 		14 hervadp_pol,
[14] 		15 herve_pol,
[15] 		16 hervfa_pol,
[16] 		17 hervfb_pol,
[17] 		18 hervfc_pol,
[18] 		19 hervfrd_pol,
[19] 		20 hervh48_pol,
[20] 		21 HERVH_c41pol,
[21] 		22 hervh_pol,
[22] 		23 hervI_pol,
[23] 		24 hervt_pol,
[24] 		25 HERVW_pol_consensus,
[25] 		26 mer34_pol,
[26] 		27 mer50_pol,
[27] 		28 mer52_pol,
[28] 		29 mer57_pol,
[29] 		30 mer89_pol,
[30] 		31 pabl_pol,
[31] 		32 prima41_pol,
[32] 		33 saimiri_boliviensis_ERV1_1_pol_consensus;
	TREE Imported_tree_1 = ((((((((((33:0.00979266,1:0.00289034):0.12174005[%bootstrapFrequency = 1 ],25:0.14199535):0.03526534[%bootstrapFrequency = 0.86 ],(13:0.07353504,11:0.18185241):0.0699492[%bootstrapFrequency = 1 ]):0.17550738[%bootstrapFrequency = 1 ],28:0.37266376):0.22224999[%bootstrapFrequency = 1 ],(31:0.49075777,(32:0.28984679,19:0.64567275):0.09419179[%bootstrapFrequency = 0.76 ]):0.0917271[%bootstrapFrequency = 0.56 ]):0.11119423[%bootstrapFrequency = 0.93 ],(24:0.35258267,(((15:0.02882386,3:0.40063372):0.03019762[%bootstrapFrequency = 0.61 ],2:0.13954135):0.23810519[%bootstrapFrequency = 1 ],(10:0.24495783,(12:0.15842698,23:0.19091805):0.03236195[%bootstrapFrequency = 0.83 ]):0.20365508[%bootstrapFrequency = 1 ]):0.15707916[%bootstrapFrequency = 0.67 ]):0.15888563[%bootstrapFrequency = 0.67 ]):0.07714759[%bootstrapFrequency = 0.43 ],(16:0.40451837,((17:0.31360897,18:0.37516146):0.05954493[%bootstrapFrequency = 0.55 ],(20:0.35100566,(22:0.21068174,21:0.0460011):0.35034225[%bootstrapFrequency = 1 ]):0.10166127[%bootstrapFrequency = 0.63 ]):0.07838739[%bootstrapFrequency = 0.72 ]):0.24365502[%bootstrapFrequency = 1 ]):0.07846837[%bootstrapFrequency = 0.6 ],((9:0.71258665,26:0.84692806):0.14734815[%bootstrapFrequency = 0.62 ],(30:0.77344501,(5:0.52832992,(8:0.39313545,(6:0.16731827,7:0.10719622):0.50469525[%bootstrapFrequency = 1 ]):0.18679681[%bootstrapFrequency = 0.76 ]):0.06632089[%bootstrapFrequency = 0.74 ]):0.12246994[%bootstrapFrequency = 0.95 ]):0.16674714[%bootstrapFrequency = 0.34 ]):0.06034369[%bootstrapFrequency = 0.08 ],14:0.56923113):0.12819162[%bootstrapFrequency = 0.42 ],(4:0.83845209,(27:1.29896182,29:1.27233961):0.07455854[%bootstrapFrequency = 0.49 ]):0.02936323[%bootstrapFrequency = 0.42 ]);

END;


BEGIN NOTES;

	SUT   TAXON = 1 NAME = color INTEGER = 5;
	SUT   TAXON = 25 NAME = color INTEGER = 14;
	SUT   TAXON = 33 NAME = color INTEGER = 5;

END;

Begin MESQUITE;
		MESQUITESCRIPTVERSION 2;
		TITLE AUTO;
		tell ProjectCoordinator;
		timeSaved 1513937795743;
		getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa;
		tell It;
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			tell It;
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				attachments ;
			endTell;
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			desuppress;
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		getEmployee  #mesquite.minimal.ManageTaxa.ManageTaxa;
		tell It;
			showTaxa #3665037932498012121 #mesquite.lists.TaxonList.TaxonList;
			tell It;
				setTaxa #3665037932498012121;
				getWindow;
				tell It;
					useTargetValue off;
					setTargetValue ;
					newAssistant  #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition;
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					getToolPalette;
					tell It;
						setTool mesquite.lists.TaxonList.TaxonListWindow.arrow;
					endTell;
					setActive;
				endTell;
				showWindow;
				getEmployee #mesquite.lists.ColorTaxon.ColorTaxon;
				tell It;
					setColor Blue;
					removeColor off;
				endTell;
				getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel;
				tell It;
					togglePanel off;
				endTell;
			endTell;
		endTell;
		getEmployee  #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord;
		tell It;
			makeTreeWindow #3665037932498012121  #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker;
			tell It;
				suppressEPCResponse;
				setTreeSource  #mesquite.trees.StoredTrees.StoredTrees;
				tell It;
					setTreeBlock 1;
					setTreeBlockID 015fee56ee6810;
					toggleUseWeights off;
				endTell;
				setAssignedID 2883.1511533172039.4173714863156451980;
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					getToolPalette;
					tell It;
					endTell;
					getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator;
				tell It;
					suppress;
					setTreeDrawer  #mesquite.trees.SquareLineTree.SquareLineTree;
					tell It;
						setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard;
						tell It;
							branchLengthsToggle on;
							toggleScale off;
							toggleBroadScale off;
							toggleCenter on;
							toggleEven on;
							setFixedTaxonDistance 0;
						endTell;
						setEdgeWidth 3;
						showEdgeLines on;
						orientRight;
					endTell;
					setBackground White;
					setBranchColor Black;
					showNodeNumbers off;
					showBranchColors on;
					labelBranchLengths off;
					centerBrLenLabels on;
					showBrLensUnspecified on;
					showBrLenLabelsOnTerminals on;
					setBrLenLabelColor 0 0 255;
					setNumBrLenDecimals 6;
					desuppress;
					getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames;
					tell It;
						setFont Helvetica;
						setFontSize 12;
						setColor Black;
						toggleColorPartition off;
						toggleColorAssigned on;
						toggleShadePartition off;
						toggleShowFootnotes on;
						toggleNodeLabels on;
						toggleCenterNodeNames off;
						toggleShowNames on;
						namesAngle ?;
					endTell;
				endTell;
					setTreeNumber 1;
					setTree '((((((((((33:0.00979266,1:0.00289034):0.12174005<bootstrapFrequency = 1 >,25:0.14199535):0.03526534<bootstrapFrequency = 0.86 >,(13:0.07353504,11:0.18185241):0.0699492<bootstrapFrequency = 1 >):0.17550738<bootstrapFrequency = 1 >,28:0.37266376):0.22224999<bootstrapFrequency = 1 >,(31:0.49075777,(32:0.28984679,19:0.64567275):0.09419179<bootstrapFrequency = 0.76 >):0.0917271<bootstrapFrequency = 0.56 >):0.11119423<bootstrapFrequency = 0.93 >,(24:0.35258267,(((15:0.02882386,3:0.40063372):0.03019762<bootstrapFrequency = 0.61 >,2:0.13954135):0.23810519<bootstrapFrequency = 1 >,(10:0.24495783,(12:0.15842698,23:0.19091805):0.03236195<bootstrapFrequency = 0.83 >):0.20365508<bootstrapFrequency = 1 >):0.15707916<bootstrapFrequency = 0.67 >):0.15888563<bootstrapFrequency = 0.67 >):0.07714759<bootstrapFrequency = 0.43 >,(16:0.40451837,((17:0.31360897,18:0.37516146):0.05954493<bootstrapFrequency = 0.55 >,(20:0.35100566,(22:0.21068174,21:0.0460011):0.35034225<bootstrapFrequency = 1 >):0.10166127<bootstrapFrequency = 0.63 >):0.07838739<bootstrapFrequency = 0.72 >):0.24365502<bootstrapFrequency = 1 >):0.07846837<bootstrapFrequency = 0.6 >,((9:0.71258665,26:0.84692806):0.14734815<bootstrapFrequency = 0.62 >,(30:0.77344501,(5:0.52832992,(8:0.39313545,(6:0.16731827,7:0.10719622):0.50469525<bootstrapFrequency = 1 >):0.18679681<bootstrapFrequency = 0.76 >):0.06632089<bootstrapFrequency = 0.74 >):0.12246994<bootstrapFrequency = 0.95 >):0.16674714<bootstrapFrequency = 0.34 >):0.06034369<bootstrapFrequency = 0.08 >,14:0.56923113):0.12819162<bootstrapFrequency = 0.42 >,(4:0.83845209,(27:1.29896182,29:1.27233961):0.07455854<bootstrapFrequency = 0.49 >):0.02936323<bootstrapFrequency = 0.42 >)<> <> <  setBetweenDouble = bootstrapFrequency >;';
					setDrawingSizeMode 0;
					toggleLegendFloat on;
					scale 0;
					toggleTextOnTree off;
					togglePrintName on;
					showWindow;
				endTell;
				desuppressEPCResponse;
				getEmployee #mesquite.trees.ColorBranches.ColorBranches;
				tell It;
					setColor Red;
					removeColor off;
				endTell;
				getEmployee #mesquite.ornamental.BranchNotes.BranchNotes;
				tell It;
					setAlwaysOn off;
				endTell;
				getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition;
				tell It;
					colorByPartition off;
				endTell;
				getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles;
				tell It;
					setOn on;
					toggleShow consensusFrequency;
					toggleShow posteriorProbability;
					toggleShow bootstrapFrequency;
					toggleShow consensusFrequency;
					toggleShow posteriorProbability;
					toggleShow bootstrapFrequency;
					setDigits 4;
					setThreshold ?;
					writeAsPercentage on;
					toggleCentred off;
					toggleHorizontal on;
					toggleWhiteEdges on;
					toggleShowOnTerminals on;
					setFontSize 10;
					setOffset 0  0;
				endTell;
				getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings;
				tell It;
					setOn on;
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					setFontSize 10;
					setOffset 0  0;
					toggleShowOnTerminals on;
				endTell;
				getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues;
				tell It;
					panelOpen false;
				endTell;
			endTell;
		endTell;
		endTell;
end;