#NEXUS [written Fri Dec 22 00:20:32 KST 2017 by Mesquite version 3.31 (build 859) at mhchoi/192.168.0.2] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=33; TAXLABELS Danio_rerio_CYP2K6 Danio_rerio_CYP2K8 Danio_rerio_CYP2K16 Danio_rerio_CYP2K17 Danio_rerio_CYP2K18 Danio_rerio_CYP2K19 Danio_rerio_CYP2K20 Danio_rerio_CYP2K21 Danio_rerio_CYP2K22 Danio_rerio_CYP2K31 Kryptolebias_marmoratus_CYP2K38 Kryptolebias_marmoratus_CYP2K39 Kryptolebias_marmoratus_CYP2K40 Kryptolebias_marmoratus_CYP2K41 Kryptolebias_marmoratus_CYP2K42 Kryptolebias_marmoratus_CYP2K43 Kryptolebias_marmoratus_CYP2K44 Kryptolebias_marmoratus_CYP2K45 Kryptolebias_marmoratus_CYP2K46 Kryptolebias_marmoratus_CYP2K47 Kryptolebias_marmoratus_CYP2K48 Kryptolebias_marmoratus_CYP2K49 Kryptolebias_marmoratus_CYP2K50 Kryptolebias_marmoratus_CYP2K51 Kryptolebias_marmoratus_CYP2K52 Oryzias_latipes_CYP2K27 Oryzias_latipes_CYP2K28 Oryzias_latipes_CYP2K29 Oryzias_latipes_CYP2K30 Takifugu_rubripes_CYP2K1 'Takifugu rubripes CYP2K-like1' 'Takifugu rubripes CYP2K-like2' Homo_sapience_CYP2W1 ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=785; FORMAT DATATYPE = Protein GAP = - MISSING = ?; MATRIX Danio_rerio_CYP2K6 --MTMALIEAFLLQGS-PTGAILGALLLFLVIYLFSSSSSSQDKEKYPPGPKPLP----LLGNLHILDLKKTYLSLLELSKRYGPIYTVYLGPKKVVILSGYKIVKEALVNLSEEF-------GDRDISPIFH-DFNRGYGIAFSNGE----NWREMRRFALSTLR-------DFGMG------RKRSEELIIEEIKYVKEEFEKFG------GNPFETKLPLALAISNIIASIVFSVRFEYSNTKLHRMVGRAYENMKLTGSPSVQIYNMFP-------WLRPIVAN-RNQIVKNLKDTFKQN---EELINGVMKTLDPFNPRGIVDSFLIRQQKDEESGKTDSLYNSNNLYCTVNNLFGAGTDTTVTTLRWGLLLMAKYPEIQAKVQDEIERVIGGRQPVVEDRK--------------------------------NLPYTDAVIHEIQRFADISPIGAPRQTTCDV----HLNGYFIKK-------GTPVFPLLVSVLRD----EDEWEMPDSFNPKHFLNKQGQFVKKDAFMPFGAGRRVCIGESLARMELFLFFTS---------------LLQYFRFTPPPGVSEDDLDLTP-----------------------VVG--FTLNPKPHQLCAVKRS---------------------------------------------------------------------------------------------------------------------------------------------- Danio_rerio_CYP2K8 ----MAVMET-LLMPVSITGVLLSAVLLFLVVYLISISS--SSPE-DPPGPKPLP----LLGNLHTLDLKNLHVSLWELSKKYGPVFKVHLGRKKVVVLAGYKTVKQALVNQAEEF-------GERDITPIFQ-DCNQGQGIVFANGE----RWRTMRRFALSTLR-------DFGMG------KKLSEEKIVDETRYLREVFMKFE------GQPFDTTQPVNYAVSNIISAIVYGKRFEYEDPAFQDMVNKANMNIRMIGSAVIQIYNMCP-------FLGPWIKT-WRQLMKNMESTRRQI---QTLADVLQETLNPLDCRGLIDSFLIRKQNIQETGEKDSSFNDQNLLITVSNLFAAGTDTTGTTLRWGLMLMAKYPQIQDRVQEEIDQVLGGREPVAEDRK--------------------------------NLPYTDAVIHETQRLANILPLNLPHKTSCDV----TFNGYFIKK-------GTCVLPLLTSVLRD----ETEWETPDTFNPQHFLDEKGQLIKRDAFMPFSAGRRACLGESLARMELFLFFTS---------------LLQYFRFSPPPGASEDELDLTP-----------------------VVG--LTLNPSPHKLCAVIRAERQLN----------------------------------------------------------------------------------------------------------------------------------------- Danio_rerio_CYP2K16 ----MAFLDA-LLH-VSSTGTLICFLLLLLVAYLLFLRS--QSDENEPPGPKPLP----LLGNLLMLDVNKPHLSLCEMAKQFGPVFKVYFGPKKVVVLAGYKAVKQALVNYAEAF-------GDREIMPLFH-DFTKGHGIIFANGE----SWREMRRFALTNLR-------DFGMG------KKKIEEKIIEETCHLREEFEKFE------GKPFETAQLMNYAASSVISSIVYGRRFEYTDPQLRTMVDRANESVRLSGSASVQLYNMFP-------FLGPLLKN-WRQLMKNLHLDIEEI---SELVNGLHQTLNHQDLRGFVDSFLVRKQYAEDSGEKDSHFHEQNLIYTVGNLFVAGTDTTSTTLRWSLLLMAKYPHIQDRVQEEIDQVIGGRQPVSEDRK--------------------------------NLPYTDAVIHETQRLANIVPMSIPHMTSSDI----TFNGYFIKK-------GTCIFPLLTSVLWD----EDEWETPHIFNPNHFLDEQGRFVKRDAFMPFSAGRRICLGESLARMELFLFFTS---------------LLQYFRFTPPPGVSEDELELTP-----------------------AVG--FTLNPIAHKLCAVKRL---------------------------------------------------------------------------------------------------------------------------------------------- Danio_rerio_CYP2K17 -----MVVES-LLH-FSSVGTLLGTLLLLLVFYRLSRDSEFQKKRKDPPGPKPIP----LLGNLLTLDLSRPFDSLCELSKTYGNVYQVFLGPKKVVVLIGHKTVKEALVNFADEF-------GERDITPIFR-ILANDHGILFSNGE----SWKEMRRFAISNLR-------DFGMG------KRGSEEKIIEEIHHLKGEFDKFE------GKPFDTTQPVNYAVSNIISSIVYGSRFEYTDPRFTEMVDRANENIRVSGSASMMLYNIFP-------WLGPFLNS-KRTVVRNMLKNRAEF---MKLITGLQETLNIHDRRGFVDSFLIRKQSDEQLGKKDTYFHAENLLMTVGNLFAAGTDTTGTTLRWGLMLMAKYPQIQDRVQEEIDRVIGGRQPVVEDRK--------------------------------KLPYTDAVIHEIQRLANIVPMNLPHVTSCDV----TFNGYFIKK-------GTTVIPLLTSVLKD----ESEWEKPNSFYPEHFLDEKGQFIKRDAFMPFSAGRRVCLGESLARMELFLFFAS---------------LLQSYRFTTPPGVSEDELDLKG-----------------------TVG--VTLNPSPHKLCAIKRF---------------------------------------------------------------------------------------------------------------------------------------------- Danio_rerio_CYP2K18 ----MAVVES-LLQ-FASTGTLLGALLLFLVLYLVSSGSGSQKEGKEPPGPKPLP----LLGNLLTLDLTRAFDTFFELSKTYGNIFQVYLGPKKTVVLVGYKTVKEALVNHAEAF-------GDREIGPSFR-IMNDEHGIVFSNGE----NWKEMRRFALSNLR-------DFGMG------KRGSEEKIIEEIHHLKGEFDKFE------GKPIDTTEPVNYAVSNIISSIVYGSRFEYTDPQFTEMVDRANENVRVGGSISMGLYNMFP-------WLGPFLKN-KRIVVRNIIQSRVQM---TKLITALLETLNPNDPRGFVDSFLIHKLSDEKSGKKNSYFHNENLMMNVANLFVAGTDTTGTTLRWGLMLTAKYPQIQDRVQEEIDRVIGGRQPAVEDRK--------------------------------KLPYTDAVIHEIQRFANIVPLNLPHTTSCDI----TFNGYFIKK-------GTTVIPLLTSVLKD----ESEWEKPNSFYPEHFLDEKGQFVKRDAFMPFSAVILTLMSDARAIE--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Danio_rerio_CYP2K19 ----MAVVES-LLQ-FASTGTLLAALLLFLVLYLVSSGS--QKEGKEPPGPKPLP----LLGNLLTLDLTRAFDTFFELSKTYGNVFQVFLGPRKTVVLVGYKTVKEALVNYAEQF-------GDREIGPGFR-IMNDEHGILFSNGE----NWKEMRRFALSNLR-------DFGMG------KRGSEEKIIEEIHHLKGEFDKFE------GKPFDTTQPVNYAVSNIISSIVYGSRFEYTDPQFTEMVDRANENVRVGGSVSMWFHEMFP-------WVGPFLKS-KRIIVENIIQSRAQM---TKLITALLETLNPNDPRGFVDSFLTRKLSDEKSGKKDSYFHEENLIMTVTNLFVAGTDTTGTTLRWGLMLMAKYPQIQDRVQEEIDRVIGGRQPVVEDRK--------------------------------KLPYTDAVIHEIQRLANIVPLSLPHKTTSDI----TFNGYFIKK-------GTTVVPLLTSVLKD----ESEWEKPNSFYPEHFLDEKGQFVKRDAFIPFSAGRRVCLGESLARMELFLFFTS---------------LLQSYRFTTPPGVSEDELDLKG-----------------------IVG--ITLNPSPHKLCAIRRS---------------------------------------------------------------------------------------------------------------------------------------------- Danio_rerio_CYP2K20 ----MAVVES-LLQ-FASTSALLGALLLLLVLYLASSGSTSQKEGKEPPGPKPLP----LVGNLLTLDLTRSFDTFFELSKTYGNIFQVFLGHRKTVVLVGYKTVKEALVNYAEVF-------GDREIGPGFNDMVLCGSGILFSNGE----NWKEMRRFALSNLR-------DFGMG------KRGSEEKIIEEIHHLKGEFDKFE------GKPFDTTQPVNYAVSNIISSIVYGSRFEYIDPRFTEMVARANENVRVGGSFSMMIYNIFP-------WLGPFLKN-RAVVVKNITQNRAEK---KKLITALLETLNPHDPRGFVDSFLIHKLSDEKSGKKDSYFHEENLMLTVANLFAAGTDTTGTTLRWGLMLMAKYPHIQDRVQEEIDRVIGGRQPVVDDRK--------------------------------KLPYTDAVIHEIQRLANIVPLSLPHRTTSDI----TFNGYFIKK-------GTTVVPLLTSVLKD----ESEWEKPNSFYPEHFLDEKGQFVKRDAFMPFSAGRRVCLGESLARMELFLFFTS---------------LLQSYRFTTPPGVSEDALDLKG-----------------------IVG--ITLNPSPHKLCAIRRS---------------------------------------------------------------------------------------------------------------------------------------------- Danio_rerio_CYP2K21 ----MAVVES-LLQ-FASTGTLLGALLLFLVLYLVSSGSESQKEGKEPPGPKPLP----LVGNLLTLDLTRPFDTFFKLSKTYGNVFQVYLGPEKAVVLVGYKTVKEALVNYAEEF-------GDREIGPGFS-IMNDEHGILFSNGE----NWKEMRRFALSNLR-------DFGMG------KRGSEEKIIEEIHHLKGEFDKFE------GKPFDTTQPVNYAVSNIISSIVYGSRFEYTDPQFTEMVDRANENVRVGGSISMWLYDIFP-------WLGPFLKN-KRIIVENIIQSRVQM---TKLITALLETLNPNDPRGFVDSFLIRKLSDEKSGKKDSYFHEENLMMTVTNLFIAGTDTTGTTLRWGLMLMAKYPHIQDRVQEEIDRVIGGRQPVVEDRK--------------------------------KLPYTDAVIHEIQRLANIVPLSLPHRTTSDI----TFNGYFIKK-------GTTVVPLLTSVLKD----ESEWEKPNSFYPEHFLDEKGQFVRRDAFMPFSAGRRVCLGESLARMELFLFFTS---------------LLQSYRFTTPPGVSEDELDLKG-----------------------IVG--ITLNPSPHKLCAIRRS---------------------------------------------------------------------------------------------------------------------------------------------- Danio_rerio_CYP2K22 --MNMALVGALLPGLSFTVGMVVAFLLLFLVISYFSSS---KDQGKYPPGPKPLP----LLGNLHILDLKNTYMSLWKLSKQYGPVYTVHMGPRTVVVLSGYKAVKEALVNLSEEF-------GERDISPIFQ-DFNEGYGIVFSNGE----NWKEMRRFALSNLR-------DFGMG------KKRGEELITEEIKYLKEEIERFG------GKPFETKLPLAMAISNVIALIVYSIRFEYNSPKFHRAIVRANENAKLVGSPSVQLYNMFP-------WLRLFVIN-QKRVVDNVQESFKQI---GEIVNGLKKTLNPQSPRGIADKFLIQQQKDKESGKTDSLYNSNNFLTTINNLFGAGIDTTVTTLRWGLLLIAKYPEIQAKVHDEIDSVIGERQPVPGDRK--------------------------------NLPYTDAVIHEIQRFADILPIGLLRQTSCDV----HLNGYLIKK-------GTSVFPLIASVLRD----ENEWETPDSFNPKHFLNKQGQFVKKDAFMPFGAGRRLCIGESLARMELFLFFTS---------------LLQHFCFTPPPGVSEDELDLTP-----------------------VVG--FTLSPMPHKLCAVKRF---------------------------------------------------------------------------------------------------------------------------------------------- Danio_rerio_CYP2K31 ----MALVGALLPGLSFTVGMVVAVLLLFLFISFFSSS---QDEGKYPPGPKPLP----LLGNLHILDLKNTYMSLWKLSKTYGPIYTVHMGPRKVVVLSGYKTVKEALVNLSEEF-------GDRDISPIFH-DFNQGYGIVFSNGE----NWKEMRRFALSNLR-------DFGMG------RKRSEELIIEEIKQLKEEFEKFR------GKPFETKMPIAMAIANIIALIVYSIRFEYTNTKLHCMIGRAYENARLTGSPSVQLYNMFP-------WLRPFVAN-QKRIINNVKEAFKQS---GEIMNGLKNTLNPQDPRGIADKFLIRQQMDEDSGKTDTYYNSNNLLSTINNLFGAGTDTTVTTLRWGLLIMAKNPEIQAKVQDEIKRVIGDRQPVPDDRK--------------------------------NLPYTDAVIHEVQRFADVLPIGSPHQTTCDV----HLNGYLIKK-------GTSVCPLLASVLRD----ENEWETPDSFNPKHFLNKQGQFVKKDAFMPFGAGRRLCIGESLARMELFLFFTS---------------LLQHFCFTPPPGVSEDELDLTP-----------------------VVG--FTLNPIPHKLCAVKRS---------------------------------------------------------------------------------------------------------------------------------------------- Kryptolebias_marmoratus_CYP2K38 ----MELLKDFVFFLFSSPTTVVGGVFLLLVFYFVFVGSTSGDGRKEPPGPRPLP----LLGNLLQLDLSRPYRTLCEFSKNYGSVFTVYFGPRKVVVLAGYETVKEALVSYAEEF-------GDRDISPIFN-DITRGHGILFSNGD----SWKEMRRFALYTLR-------DFGMG------KRVVEEKILEECGHLIQMFENQK------GKPFDTAHPLNYATSNIICSVVYGSRYEYNDPRFRNMVSRASENIRLSGSAQIQIYNMFP-------WLFRWIKN-CQLMLKNVEMTIRDM---KAIVTQLKETLDPQRCRGLVDCFLIQKQRDEDSGVKDTHFHEENLIFTATNLFAAGTETTATTLRWSLLLMAKYPHIQDQVREELLRVIGNRAARVEDRK--------------------------------NLPFTDAVIHETQRLANIVPMSIPHKTSQDV----TFQGYFIKK-------DTIVIPLLTSVLHD----EREWESPHTFNPSHFLDKEGKFIKRGAFLPFSAGRRVCLGESLAKMELFLFFTS---------------LLQRFHFTPPPGVSEDELDLTP-----------------------AIG--FTIPPSPHKLCAVSHQ---------------------------------------------------------------------------------------------------------------------------------------------- Kryptolebias_marmoratus_CYP2K39 ------MLEDIFQSP--TSVSLFGVFVALLLLHLLHS-SFSSQERREPPGPRPLP----VFGNLFQVDLKRPDQSLFNLSKKYGPVFQIYLGLKKVVVLAGYRTVKQALVNQAEEF-------GNIDISPIIY-DFNQGHGIALANGD----SWKEMKRFALTTLR-------DFGMG------KKMSEDLIIEECGYLIKEFEQLE------GETFDRSQTIDYASSNVVSALTFGKRFDYEDPIFQTMVERNHETLCLIGSASIQLYNLIP-------WLGPFLKN-WRDFMKNMEDMKADI---RKLITDLKETLDPEVCRCFIDAFLIRKKHLEDSDIIDSHYHDENLLFSVINFFGAGTETTATTLKWSLLYMAKFPHIQDRVQEELSRVVGSCQIQIDDRK--------------------------------NLPYTNAVIHETQRFANIGPFSVPHATTKDV----TLQGYFIKK-------GTTVLTLLTSVLYD----ENEWESPHSFNPSHFLDDEGKFIRRDAFMPFSAGRRACLGESHAKMELFLFFAS---------------LLQNFHFIPPPGVSEDDLDLKP-----------------------VLG--CTLNPKPQQLCAVLRR---------------------------------------------------------------------------------------------------------------------------------------------- Kryptolebias_marmoratus_CYP2K40 ------MLEDIFQSP--TSVSLFGVFVALLLLHLLYS-SFSSQKRPEPLGPRPLP----VFGNLFQVDLKRLDQSLFNLSKTYGPVFQVYFGPKKVVVLAGYRTVKEALLNQAEEF-------GNREITPLFY-DFNQGHGIVFSNGD----SWKEMRRFALTTLR-------DFGMG------KKMSEEIIIEECGYLIKEMEQYG------GEAFNNTQAINYAASNVISALMFKKRFEYKDPVFQTMVEKDNETIRLTGSVSIMIYNLCP-------WLGPFLKN-WRDMMKNIEANKAHL---RKLISDLKETLDPEICRCFVDAFLIQKKHLKDFDEKSSHYHDENLLYSVMNLFAAGTDTTATTLKWGLLYMAKFPHIQDRVQEELSRVVGSRQIQTEDRK--------------------------------NLPYTDAVIHETQRFANIGPLAIPHKTTRNV----TFQGYFIKK-------DTTVFPLLTSVLYD----ENEWESPHSFNPSHFLDDEGKFIRRDAFMPFSAGRRACLGESLAKMELFLFFTS---------------LLQRFHFTPPPGVPEDELDLKP-----------------------VVG--MTLAPKPQQLCAVRRR---------------------------------------------------------------------------------------------------------------------------------------------- Kryptolebias_marmoratus_CYP2K41 ------MLEDIFQSP--TSVSLFGVFVALLLLHLLHS-TFSSQKRPEPPGPRPLP----VFGNLFQVDLKRLDQSLFNLSKTYGPVFQVYFGPKKVVVLAGYRTVKEALLNQADEF-------GNREITPILN-DLTQGHGILFSNGD----SWKEMRRFALSTLR-------DFGMG------RKMSEEIIIEECGYLIKEMEQYG------GEAFNNTQAINYAASNVISALMFGKRFEYKDPVFQNMVERDNETIHLMGTASIMMYDLFP-------WLGPFFKN-WRNLMKNNEDSLADL---KKLIADLKETLDPEICRCFVDAFLIRKKHLKDDEVKNSHYHDENLLYTVDDLFAAGTDTTATTLKWGLLYMAKFPHIQRCVQEELSRVVGSRQVRIEDRK--------------------------------NLPYTDAVIHEIQRFANIAPMALPHTTSNDL----TFQGYVVKE-------GTTVFPLLTSVLYD----ESEWESPHSFNPPHFLNDEGKFIRRDAFMPFSAGRRACLGESLAKMELFLFFAS---------------LLQHFHFTPPPGVSEDEVDLKP-----------------------VVG--LTLTPKPQRLCAVHRL---------------------------------------------------------------------------------------------------------------------------------------------- Kryptolebias_marmoratus_CYP2K42 ------MLEDIFQSP--TTVSLFGVFVALLLLHLLYS-SFSSQNRPEPPGPRPLP----VLGNLFQVDLKTIHHSLFILSKKYGSVFQVRLGPKKVVVLAGYRTVKEALVNQAEAF-------RNIEITPLFH-DINQGHGIILANGD----SWKEMRRFALTTLK-------DFGMG------RKMSEEIIIEECGYLIKEFEQFE------GKAFSNTQVISYATSNVISALVFGKRFDYKDPFLNIMMERNYENIRLMSSASIQIYNVIP-------WIGPLLKN-WRDFKKNIGNSLADI---KKIIVDLKKTLDPEVCRCFVDAFLIHKKQLEDSENRNSHYHDNNLLYSVMNLFGAGTETTATTLKWGLLYLVKFPHIQDRVQEELSRVVGSRQVRIEDRK--------------------------------NLPYTDAVIHEIQRVANVAP-VLPHTTTKDV----TLQGYFLKE-------GTTVLLLLLSVLSD----ESEWESPHSFNPSHFLDDEGKFIRRDAFMPFSTGPRACLGESLARMELFLFFAS---------------LLQHFRFTLPPGVSEDELDLKP-----------------------VEG--FTLGPKPQQLCAVQRQ---------------------------------------------------------------------------------------------------------------------------------------------- Kryptolebias_marmoratus_CYP2K43 ------MLEDIFQSP--TSVSLFGVFVALLLLHLLHS-TFSSQNRPEPPGPRPLP----VFGNLFQVDLKRLDQSLFNLSKKYGPVFQVYFGPKKVVVLAGYRTVKEALVNQADEF-------GDRDICPLFY-DLNQEYGILFSNGD----SWKEMRRFALSALR-------DFGMG------RKMSEEIIIEECGYLIKEFEQFE------GEAFDNTQAINYATSNVISALMFGKRFEYKDPVFQTMVERDNETIHLMGTASLVIYNMIP-------WMGPFLKN-WTDLMKNMENNKADI---RKIIADLKQTLDPETCRCFIDAFLIRKNQLEDLEMKSSHYRDENLLYSVINLFAAGTDTTATTLKWSLLYMVRFPQIQDRVQEELSRVVGSRQVRIEDRK--------------------------------NLPYTDAVIHEIQRLANIVPMALPHATSKDI----TLQGHLIKE-------GTTVFPLLTSVLYD----ESEWESPHSFNPSHFLDDEGKFIRRDAFMPFSAGRRACLGESLAKMELFLFFAS---------------LLQHFQFTPPPEVSEDELDLKP-----------------------VVG--LTLAPKPQKLCAVCRL---------------------------------------------------------------------------------------------------------------------------------------------- Kryptolebias_marmoratus_CYP2K44 ------MFED-LLSP--ISVSLFGVLVALLLLHLLYS-SFSSNERPEPPGPRPLP----LFGNLFQVDLKWLDKSLFELSKKYGPVFQVYFGPKKVVVLAGYKAVKQALVNQAVEF-------GNRDITPAFY-DLTKSHGIIFSNGD----SWKEMRRFALTALR-------DFGMG------KKMSEEIIIEECHYLIEELEQFE------GKAFENTKPFNYAASNVISALIFGRRFDYKDAIFQAMVRRENEIIRLTGSASVWIYNAFP-------WLAPLLKN-WRDLIKNVKGNETDA---MKLIADLKESLDPEVCRCYVEAFLIHKKQLEDSEMKNLYYHDENLLYCVTNLLEAGNDTTANTVKWGLLHMAKNPHVQDRVQEELSRVVGSRQIRTEDRK--------------------------------NLPYTDAVIHEIQRLANIFPLALPHATSTDV----TFQGYFIKQ-------GTTVFPLLTSVLYD----ESEWESPHSFNPSHFLDKEGNFIKRDALMPFSAGRRACLGESLAKMEVFLFFTS---------------LLQHFHFTPPPGVSEDEVDLTP-----------------------AVG--FSLCPRPQKLCAVRRK---------------------------------------------------------------------------------------------------------------------------------------------- Kryptolebias_marmoratus_CYP2K45 ------MFED-LQPP--TSVLLLGVIVALLLLHFFCS-NIFIQERREPPGPRPLP----VFGNLFQVDLKWLDKSLFKLSKKYGPVFQVYFGPKKVVVLAGYRTVKQALVNHAVEF-------GTREITPTFN-DLHKGHGIAFSNGD----SWKEMRRFALTTLR-------DFGMG------KKMSEKIIAKECCYLIEEFEEFE------GKAFNNTKPINYAATNVISSLMFGKRFDNKDQVFQAMVERDNEIVRLSGTASLWLYNIFP-------WLGPFFKN-WRDFMKILEDNEKTV---KKIIADLKETLDPEVCRCFVDAFLIRQKHLEDSEITNLHYHDDNLLYSVMNLFEAGNDTTANTVKWGLLYMAKFPHIQDRVQEELSRVVGSRQVRTEDRK--------------------------------NLPYTDAVIHETQRLAKNLPVGLPYTTSKNV----TFQGYFIRA-------GTTVFPLLTSVLYD----ESEWESPHSFNPSHFLDDEGKFIRRDAFMPFSAGRRACIGESLARMELFLFFAS---------------LLQHFRFTPPPGVSEDEVDLAP-----------------------VVG--FSLCPRPQKLCAVRRR---------------------------------------------------------------------------------------------------------------------------------------------- Kryptolebias_marmoratus_CYP2K46 ------MFED-LQS-----VSLFGVFVALLILHFLYS-SFYSQETQEPPGPRPVP----LFGNLFQMDLRRLNQSLFDLSKKYGPVFQVYFGSQKVVVLSGYRTVKQALVNHANEF-------GDREITPAFF-DLTKGFGVVFSNGD----LWKEMRRFALTTLR-------DFGMG------KKRSEDIIVEECQYVINEFEQLE------GKPFDNTKFFNYAATNIVSVLMFGKRFDYKDQVFRAMVERDNELIRLLGTASISVYNCFP-------WLGPFLKD-WRDYIKHVKASREDV---KQIIADMKETLDPEVCRCFVDAFLIRKKQLEESENS--HFNDDNLLYSVINLIEAGNDTTATTLKWSLLYMAKYPHVQDRVQEELSRVVGSRQVQSEDRK--------------------------------NLPYTDAVIHETQRFADLVPLALPHTTCQDV----TLQGYFIKK-------GTTVFPLLTSVLYD----ENEWESPHSFNPSHFLDDEGKFIRRDAFMPFSAGRRACLGEGLARMELFLVFTS---------------LLQRFCFTPPPGVSGDEVDLTP-----------------------VVG--LTLSPRPQKLCAVQRN---------------------------------------------------------------------------------------------------------------------------------------------- Kryptolebias_marmoratus_CYP2K47 -----MGEVDVFLWSFSPVSLLVAPVFLLLISLYFSSSFSSQKPRPGPPGPRPLP----LLGNLLQLDFKRPDKTFVELSKKYGSVFTFYMGLKKAVVLTGYQTVKEALVNYADEF-------GERDVPAVAK-EANLNHGIVWSNGD----SWKEMRRFALTNLK-------DFGMG------KKACEDKIIEESQSLVQEFKKFK------GEAFSTDRIITCAVSNIICSVIYGSRFEYEDPAFQTITNRTSIAVKFSASPKIQFYNLYP-------GIGKLFISARKKMSDIYAANKKDH---LKLLNNLKETLNPQMCRGVADVFMVPDLHLQESGISNSNYTDENLLATVMNLFAAGTETTTTTLRWSLLYMTKYPKIQAKVQEELNTVVGSRQVQVQDKQ--------------------------------NLPFTNAVIHETQRLANIVPLALAHRTSQDV----TFQGHFIEK-------GTIVFPVLTTVLHD----ESEWEKPYDFHPAHFLDKDGNFTKRDAFLPFSAGRRMCPGESLAKMELFIFFTT---------------FLQHFRFTPPPGVSEEDLDLTP-----------------------LPGGTGTLRPQPHKLCAVSLM---------------------------------------------------------------------------------------------------------------------------------------------- Kryptolebias_marmoratus_CYP2K48 --------------------------------------MSSKESRKEPPGPTPLP----LLGNLLQLDLKKPHETLIEFSKKYGSVFTVHFGPQKVVVLAGYRTVKEALVNHDEAF-------GVRGPLQIVD-ELNQGHGVLWTNGN----TWREMRRFSLTNLK-------DFGMG------RKACEDKIIEECQHLVEVLKNFK------GEAFDTNQSLNYAVSNIIASMIYGSRFEYEDLEFTSMVDRINRSGTLLGSPSVQVYNLYP-------FLFKWIAN-RKESHNVAAANRKQN---FALIRHLKQTLNPQMCRGFVDAFLVHKKKLEESGISDNEFSDDNLVMTVANLFAAGSETTSSTLRWGLLFMAKFPDIQGKVREELKRAVGDRQVQAADRM--------------------------------NLPYTNAVIHETQRMANILPESLPHKTSRDI----TFHGHLIRK-------GTTVYPLLMSVLRD----ANEWEKPDTFYPPHFLDKDGKFAKRDAFMPFSAGHRMCLGESLARMELFIFFTT---------------LLQHFRFTPAPGVLEEDLDLTP-----------------------RTG--LSLTPVPHKLCAVSCM---------------------------------------------------------------------------------------------------------------------------------------------- Kryptolebias_marmoratus_CYP2K49 -----MVVLDGLLQSFCSASLLVALVVLLTYFLFS-SSFSSKNPSKEPPGPRGLP----VLGNLLQIDLKRPHHTFQELSKKYGSVFTVYLGPKKVVVLTGYKTVKEALVQYDEEF-------GDRDSLPILR-EFNKGHGILWSNGD----SWREMRRFTLTNLR-------DFGMG------RKVCEDKIIEECQRLTEVFKNFN------GKPFETMQPINYAVSNIICSMVYGSRFEYSDPEFTSMVDRTNRNIQLTGSASIQVYNMFP-------WLFKWLPT-RKEINETFEMNRNQN---FSLFHQLRETLNPEMCRGVVDAFMVRRQNLEKSGVKNNHFHDDNLFMTVTNLFVAGTETTSTTLRWGLLLMAKYPNIQDQVQEELRRVIGDRQVQVSDRK--------------------------------NMPFTDAVIHETQRLGNIVPAALPHKTSKDF----SFHGYFIKK-------DTTVYPLLTSVLND----PAEWEKPHTFHPAHFLDKDGNFVKRDAFMPFSAGRRICLGESLARMELFIFFTT---------------LLQHFTFTPAPGISRDELDLTP-----------------------VGT--FTLNPSPHKLCAVSRM---------------------------------------------------------------------------------------------------------------------------------------------- Kryptolebias_marmoratus_CYP2K50 -----MGILKAFLRSFSPTSFLGDVAFLLLIYVCFSFIFSSKTYRHGPPGPKPLP----LLGNLLQLDFKRLDRTFVEFSKKYGSVFAIYLGQRKVVILAGYQTVKEAFVNYAEEF-------GDRDVPIVAK-DTNLDHGIAWVNGD----SWKEMRRFALTNLK-------DFGMG------KKACEDKIIEEFHKLIKEFKKFK------GEAFDMAQLMNFAVCNIICSMVYGNRFEYGDPEFQTVINKTGESLNLLGTPAIKLYTLFP-------SLGKLLFSARKKLKTTFEDNKRHH---LTLLNRLRETLNPQMFRGVADVFIAPDLHLQESEISTSNYTDENLLAIVINLFAAGTETTLTTLRWGLLFLTKHPKIQAKVQEELNTVVGSRQVQVQDKQ--------------------------------NLPFTNAVIHEIQRLANIVPLALAHSTSKDV----IFQGHFIEK-------GTIVFPLLTTVLHD----ESEWEKPYDFHPAHFLDKDGNFTKRDAFLPFSAGRRICPGESLAKMELFIFFTT---------------FLQHFRFTPPPGVSEEDLDLTA-----------------------LPG--GTLRPQPHKLCAVSLK---------------------------------------------------------------------------------------------------------------------------------------------- Kryptolebias_marmoratus_CYP2K51 ------MFED-LQSP--TSVLFG-VFVALLLRHLFYS-NFSSNERQEPPGPRPVP----LFGNLFQVDLKRLHQSLFNLSKKYGPVFQVYFGPRKVVVLAGYRMIKQALVNQADEF-------GTRKMIPAFY-DLSKGHGIVFSNGE----TWKEMRRFALTTLR-------DFGMG------KKMSEKIIIEECGFLIKEFEQFE------GKVFNNTKSINYATTNVISALMFGKRFEYKDQVFQGMVERGNEIIHLVGTASLWIYNIFP-------WLGPFLKN-WRDFMKILEDNEKTV---NKIIADLKETLDTEVCRCFVDAFLIRQKHLEDSEITNLHYHDENLLYSVTNLLEAGNDTTANTLKWGLLYMAKFPHIQDRVQEELSRVVGTRQIQTEDRK--------------------------------NLPYTDAVIHETQRLANILPISLLHATSKDI----TLQGYFIKE-------GTAVLPLLTSVLYD----ESEWESPHSFNPSHFLDDEGKFIRRDAFMPFSAGRRACLGESLARMELFLFFTS---------------LLQRFRFTPPPGVSGDEVDLTP-----------------------VVG--FTLSPRPQKLCAVQRK---------------------------------------------------------------------------------------------------------------------------------------------- Kryptolebias_marmoratus_CYP2K52 ------MLEDIFQSP--TSVSLFGVFVALLLLHLLHS-TFSSQKRPEPPGPRPLP----VFGNLFQVDLKRLDQSLFNLSKTYGPVFQVYFGPKKVVVLAGYRTVKEALLNQADEF-------GNREITPIFY-DFSEGHGIVFSNGD----SWKEMRRFALSTLK-------DFGMG------RKMSEEIIIEECGYLIKEMEQYG------GESFNNTQAISYTASNVISALMFAKRFEYKDPVFQSMVEKDKQNIHLAGSASIMIYNFIP-------WLGPLLKN-RRTMLKNFIDGRADI---WRKIEELKETLDPEVCRCLVDAFLIRKKQLEDSKIKNSHYHDNNLLYSIQGLFVAGTDTTATTLKWGLLYLTKFPHIQDRIQEKLSRVVGSCQVRIEDRK--------------------------------NLPYTDAVIHETQRFANIGPLALPHTTTKDV----TLQGYFIKK-------GTTVLTVLTSVLYD----ENEWESPHSFNPSHFLDDEGKFIRRDAFMPFSAGTLLDLGISL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Oryzias_latipes_CYP2K27 --------MDLLMPLVSSPTTVIGAVFLLLVLYLASAGSTSRDLGKDPPGPRPLP----LLGNLLQLDPRRPHKALCELSKSYGPVFTVYFGIQKVVVLAGYKTVKEALVNNAEEF-------GDRDITPMFQ-DMNKGHGILFANGE----SWKELRRFALTTLR-------DFGMG------KRIAEEKILEECDYLIQGLEKHQ------GNPVDLTCPLNYATSNIISSIVYGSRFDYDDPRFRNLVSRANETIRINGHPLTHLYNMFP-------RWFRWIKN-RKIILNNVEMTVKDV---KDLVKHLKETLNPSVCRGFVDCFLIKKQKEEDSCVKESHFTEQNLVFSVSNLFAAGTDTTATTLRWGLLLMAKYPHIQDKVHEELAKVLGGRQVRVDDRK--------------------------------NLPYADAVIHEIQRVANIIPMSIPHKTNRDV----TFHGYLIQK-------GTTVIPLLASVLND----ENEWESPHTFNPHHFLSKEGKFVKRDAFMPFSAGRRACLGESLAKMELFLFFTS---------------LLQRFHFTPPPGVSEEELDLTP-----------------------AMG--FVLAPSSHELCAVSLQ---------------------------------------------------------------------------------------------------------------------------------------------- Oryzias_latipes_CYP2K28 ------MIQYIFRFMP-ASVSLMWVIVGVLVLLFLYF-QLSFFNWREPPGPRPLP----LLGNLFQVDLKRLDQSLFDLSKKYGPVFVVNFGPKKVVVLAGYRTVKQALVNQAKEF-------GNREVTPIFY-DFNKEHGILFANGE----SWNEMRRFALSTLR-------DFGMG------KRISEQNIIEECRWLIEELEKLQ------GKPFDNTHTISYAVSNVLSGLMFGKRFDYQDPLLQAIVDRDNEIIYLTGTVSILLYNMFP-------WLGPWLKN-WKTLMKNMEAAKTDM---KKIIAELKDTLDPDTRRCFVDAFLTQKQNLK--EVNGSHYHDDNLLYTVMNLFAAGTDTTATTIEWCLLFMAKYPHIQERVQEELNWVVGSRQVRIEDRK--------------------------------NLPFTDAVIHESQRLANIAPMAIPHTTSKDV----TFQGYFIKK-------GTTVLPLLTSVLYD----ESEWESPRTFNPSHFLDKEGKFLKRGAFMPFSAGRRVCLGESLARMDIFLFFTS---------------LLQHFSFTPPPGVSEDELDLTP-----------------------VVG--FTLSPQPQGLCAVRRQ---------------------------------------------------------------------------------------------------------------------------------------------- Oryzias_latipes_CYP2K29 -----MQILD-FFQSYSSVSLVGILAVLVLYFISQ-FIFNSEQHGQEPPGPRPLP----IIGNLMQIDLKRPYKTLEEFSKTYGPVFTVFFGGEKVVVLAGYKTVKNALVNHDEEF-------GERAIPPIIQ-ELNKGLGVLWSNGD----IWRDIRRFALTNLR-------DFGMG------KKACEDKITEECQYLLEVFKKFK------GNAFDTTKPLNYAVSNIICSMVYGSRFEYDDPKFTSMVDRTNRNIQLSGSPTLQAYNMVP-------WLFKWVAS-RREVHECAAANRKQN---QSIFSHLKETLNPQMCRGFVDAFLVKGQTLEKSGVTNSAFNDENLLMTVIHLFAAGTETTSTTLRWGLLLMAKYPKIQDQVQDELRRVIGDRMVQVSDRK--------------------------------NLPFTDAVIHEIQRLASIVPTALPHKTSKDV----TFQGYFIKK-------GTTVFPLLTSVLHD----ANEWEKPHTFYPAHFLDKDGKFVKREAFIPFSAGRRICLGESLARMELFMFFTT---------------LLQNFCFTPPPGVSKEELSLTP-----------------------CGG--ITVGPVPHKLCAVPCSE--------------------------------------------------------------------------------------------------------------------------------------------- Oryzias_latipes_CYP2K30 -----MGVWDTLLPSLSPSSLLGAGVLLLLVFLFCPHRTSSQKHRKEPPGPTPIP----ILGNLHQLDLKRPDQTFMKFAKKYGSVFTVYMGPKKTVVLTGYKTMKEALVNYAEEF-------GEREAPTVAK-EAHLDCGVVWANGA----SWREMRRFALSTLR-------DFGMG------KRACEDKIIPECHSLLKEIRKFQ------GEAFDPTLIINSAVCNVICSMVYGTRFEYDDPDFRTILSRTMKGIQLLGSPGVQLHNLFP-------RIGRLFLSASKQINQIFTANKNYH---LKLL---KETFTPHTCKSIADAFQLR--QQEEDGFPNSHFHDANILVTIMNLFTAGTETTAATLRWALLFMAKYPKIQDQVQEELSRVMEGRQVTVEDRQ--------------------------------RLPFTDAVIHETQRKANIIPLSLLHRTSQDV----TFKGFFIEK-------GTTVIPVLTSVLYD----ENEWEKPNIFYPAHFLSKDGKFLKRDAFMPFSAGRRLCLGESLARMELFLFFST---------------LLQHFRIAPPLGVSEEELDLTP-----------------------RPG--GTLSPQPHKLCLVSLK---------------------------------------------------------------------------------------------------------------------------------------------- Takifugu_rubripes_CYP2K1 -----MGIVDLFLQASSSVSLLGALALLLFVYFISSVSFSSKKDRKCPPGPKPLP----ILGNLLQFDLKRPYNTLMKLSKTYGSVFTVYLGPKKVVVLAGYKTVKEALIDHAEEF-------GERDPIMLVQ-NANHEHGVLWSNGE----SWKEMRRFALTNLR-------DFGMG------KKACENKIIEECSYLMEELKKWK------GEPFDTTHPINYAVSNIICSMVYGNRFEYDDPEFTSLVDRTNTLIQISGSPSVLVYDLFP-------WIG-PLVNNKKLFQSLFAANKKQN---LQLFAAAKEMLNPQMCRSFVDSFLARQQILEKSGT-NVHFHDENLMSTVMNLFNAGTDTTATTLRWGLLLMAKYPLIQDQVQEELRRVIGSRQVQVEDRK--------------------------------SLPFTDAVIHETQRLANIVPMALPHKTSQDV----TLQGFFIEK-------GTTVYPLLTSVLYD----ETEWEKPLNFYPAHFLDKDGKFVKREAFLPFSAGRRICLGEGLAKMELFIFFST---------------LLQHFRFRPPPGVSEDHLDLTP-----------------------RVG--LTLNPSAHKLCAVSCL---------------------------------------------------------------------------------------------------------------------------------------------- 'Takifugu rubripes CYP2K-like1' -----MSLQDFLLSLG--PSTLMGSVALLLLLCLVSR-SFGRATRREPPGPRALP----LLGNLLQLDLSRPHQTLYQLSKKYGPVFKVHFGPRKVVVLAGHKTVKEALVGNAEQF-------GDRDISPIFY-DMNQGHGILFSNGE----TWKEMRRFALSTLR-------DFGMG------KRMIEDKIAEECNYLIQKFEDHE------GRAFDTSRLANYATSNIISSIVYGSRFDYDDPRFINMVNRANEVIRLTGSAPIQLYNIFP-------GLANWIKN-RQLLLKQVAMNFRDM---TDLIQQLKDTLNPGVCRGFVDCFLLRKQKAVDSGVIDSLYNEKNLLYSLSNLFGAGTDTTATTLRWGLLLMAKYPRIQDQVQQELSMVVGNRRVCVEDRK--------------------------------NLPYVDAVIHEIQRLGNIAPMAVPHKTARDV----EFRGYFIEKVKYF-SEGTTVFPLLTSVLYD----ENEWETPHTFNPSHFLDKDGKFIKRDAFMPFSAGRRLCLGEGLAKMEIFLFFTS---------------LLQQFRFTPPPGVGEDELDLTP-----------------------ALG--FTLSPSPHKLCAIPRQ---------------------------------------------------------------------------------------------------------------------------------------------- 'Takifugu rubripes CYP2K-like2' ------MIEDLFESS--TSGFLMVAIVSLLLLQLCFS-FISREKRKDLPGPEALP----LLGNLHQLDLKRLDCHLVQLSQKYGPIFRVYLASKKVVVLAGYTAVKQALVNQAEDF-------GEREIFPIFH-DFNKGNGILFTNGD----QWKEMRRFALMTLK-------DFGMG------KKIEEK-IIKECQYLIEAFEQHQ------GEAFSNAQVISYATSNIISAIMYGRRFDYKDPTFQAMIERDHEVIHLTGSPSIQIYNIFP-------WLGPFLKT-WRYIMKKVEINIEST---RRIIGEMKETRNPGTCRCFVDAFLIHKENQEESDVNAHYYHEDNLLHCAMNLFGAGTDTTATTLQWGLLYITKYPHIQDGVQEELRRVVGNRQVRVEDRK--------------------------------NLPYMEAVIHETQRMANIVPMSLPHRTSRDR----HLLGSICPQ-------GTMVIPLLTSVLYD----ESQWEKPHTFNPAHFLDDEGRFVRRDAFMPFSAGRRMCLGEGLARMELFLFFAS---------------LLQHFRFKPAPGVSEDSLDLTP-----------------------VVG--ITLNPLTHKLRAISRF---------------------------------------------------------------------------------------------------------------------------------------------- Homo_sapience_CYP2W1 QPRPHGPAALAVPGPPGALGAALRLRPRPLPSCPVAPGASPAAARREPALAASVATGPVPDGALRTLRAGVHRAPGAPEDGGADGVRGGQRGAGGPRAGAGRPASHRHLPAHPARWRHLLLIWGALEGCPPVHGACPAQPGRGPGAGG*QDSAGAEMPLWAAGWLQRPALPAGPTGLGSLQYHLRAPLRPPI*LPGPRVCVPAGSHR*GHGPLGVPWPAAVQRLPMARGPAPAAPARPAQDRGGPCHSEDPPGGAEAPRVPGGPRVQLCGRPDPAGTGG*PRGPVC*GQRGGLHPGHGHGRDGDDLGHAAVGRTSDGPAPGRAGPGAGGARPRAGPWADSPAGGPAGSALHKRRAPRGAAVHHAPAARAPLHRGRHTAGRLPAPQGHARDSPADLGAPG*DTVADPRPVQPRPFPGREWALCEAGGLPAFLCRPPRLCWGAPGQDRALPAVCRPPAEVPPAAPAWRQSGLPGHHARPGFYHEAEGPGPVCGAQALGAPPAPRSS*PLPSQPWVLPPSLLPPHSSDCSGRALRTPTLTPTPTGSATASGYTQDYPCPTLWDPHPSDAVCSSVPASPQERLQGPAHSPTPEAALPPT*LPPGPPSTYSWGCRETTGGCIQPETGAGGCPQRASPAPPRSWDSCRPHSIPAPGTLPAAVPGGSRPAVPDSEPSHWGHAYDWCREARPTFSFRDRHWRQRLPWGGGRAPQPLKTSSTAVAKMETLTRCGGSCL*SQHFGRPRQANHEVRSSRPACPTW*NPVSTKNTKKLTEKKKKKKKKKKKKKKKK- ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 785; END; BEGIN NOTES; TAXABITS NAME = newlyAddedTaxon on = 1 - 33; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 785; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 785; END; BEGIN TREES; Title Imported_trees; ID 016041be8ec92; LINK Taxa = Taxa; TRANSLATE [0] 1 Danio_rerio_CYP2K6, [1] 2 Danio_rerio_CYP2K8, [2] 3 Danio_rerio_CYP2K16, [3] 4 Danio_rerio_CYP2K17, [4] 5 Danio_rerio_CYP2K18, [5] 6 Danio_rerio_CYP2K19, [6] 7 Danio_rerio_CYP2K20, [7] 8 Danio_rerio_CYP2K21, [8] 9 Danio_rerio_CYP2K22, [9] 10 Danio_rerio_CYP2K31, [10] 11 Kryptolebias_marmoratus_CYP2K38, [11] 12 Kryptolebias_marmoratus_CYP2K39, [12] 13 Kryptolebias_marmoratus_CYP2K40, [13] 14 Kryptolebias_marmoratus_CYP2K41, [14] 15 Kryptolebias_marmoratus_CYP2K42, [15] 16 Kryptolebias_marmoratus_CYP2K43, [16] 17 Kryptolebias_marmoratus_CYP2K44, [17] 18 Kryptolebias_marmoratus_CYP2K45, [18] 19 Kryptolebias_marmoratus_CYP2K46, [19] 20 Kryptolebias_marmoratus_CYP2K47, [20] 21 Kryptolebias_marmoratus_CYP2K48, [21] 22 Kryptolebias_marmoratus_CYP2K49, [22] 23 Kryptolebias_marmoratus_CYP2K50, [23] 24 Kryptolebias_marmoratus_CYP2K51, [24] 25 Kryptolebias_marmoratus_CYP2K52, [25] 26 Oryzias_latipes_CYP2K27, [26] 27 Oryzias_latipes_CYP2K28, [27] 28 Oryzias_latipes_CYP2K29, [28] 29 Oryzias_latipes_CYP2K30, [29] 30 Takifugu_rubripes_CYP2K1, [30] 31 'Takifugu rubripes CYP2K-like1', [31] 32 'Takifugu rubripes CYP2K-like2', [32] 33 Homo_sapience_CYP2W1; TREE Imported_tree_1 = (((((((((((25:0.12269773,13:0.07567688):0.01699886[%bootstrapFrequency = 0.51 ],14:0.0804712):0.0243525[%bootstrapFrequency = 0.53 ],16:0.09062571):0.01620777[%bootstrapFrequency = 0.77 ],(15:0.15526902,12:0.14235886):0.03120047[%bootstrapFrequency = 0.59 ]):0.04671781[%bootstrapFrequency = 1 ],(19:0.19084115,(17:0.15457996,(18:0.10009294,24:0.10892419):0.04190629[%bootstrapFrequency = 0.98 ]):0.01790594[%bootstrapFrequency = 0.56 ]):0.0442302[%bootstrapFrequency = 0.96 ]):0.05643878[%bootstrapFrequency = 1 ],27:0.22106763):0.07039659[%bootstrapFrequency = 0.99 ],32:0.34463837):0.13110519[%bootstrapFrequency = 0.96 ],(31:0.24440899,(11:0.17979554,26:0.19743947):0.04191637[%bootstrapFrequency = 0.96 ]):0.1076103[%bootstrapFrequency = 1 ]):0.01918323[%bootstrapFrequency = 0.42 ],(((21:0.28656949,28:0.21436132):0.03208787[%bootstrapFrequency = 0.34 ],22:0.18699033):0.05106922[%bootstrapFrequency = 0.84 ],(30:0.21747102,(29:0.29145324,(20:0.10606955,23:0.19799142):0.15109078[%bootstrapFrequency = 1 ]):0.1282182[%bootstrapFrequency = 0.94 ]):0.04366014[%bootstrapFrequency = 0.52 ]):0.16528788[%bootstrapFrequency = 1 ]):0.07608694[%bootstrapFrequency = 0.41 ],(((9:0.11520813,10:0.05346383):0.13293517[%bootstrapFrequency = 1 ],1:0.08843028):0.30083343[%bootstrapFrequency = 1 ],((3:0.23713482,2:0.23417949):0.05049428[%bootstrapFrequency = 0.53 ],(4:0.10350569,(7:0.06847803,(5:0.08048789,(6:0.02830902,8:0.02139106):0.00829028[%bootstrapFrequency = 0.9 ]):0.01986324[%bootstrapFrequency = 0.95 ]):0.06910295[%bootstrapFrequency = 1 ]):0.17431064[%bootstrapFrequency = 1 ]):0.00950521[%bootstrapFrequency = 0.88 ]):0.0339569[%bootstrapFrequency = 0.84 ]):0.33245798[%bootstrapFrequency = 0.0 ],33:1.09479335); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1513869633059; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 7414765907089875110; tell It; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 4773292265537062776; mqVersion 331; checksumv 0 3 427719133 null getNumChars 785 numChars 785 getNumTaxa 33 numTaxa 33 short false bits 2097151 states 2097151 sumSquaresStatesOnly 1.70038467585932E14 sumSquares 1.70038467585932E14 longCompressibleToShort false usingShortMatrix false NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1423 871; setLocation 691 433; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #4773292265537062776 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1323 799; setLocation 691 433; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 16 6 1 1; subCosts 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;