NEXUS
[File created by TreeBASE:  1/16/09  15:39:39]
[Matrix accession#: M4220]

BEGIN TAXA;
	TITLE M4220;
	DIMENSIONS  NTAX=16;
	TAXLABELS
		Kentropyx_altamazonica_2	Kentropyx_altamazonica_1	Cnemidophorus_gramivagus	Ameiva_ameiva	Kentropyx_striata	Kentropyx_sp_2	Kentropyx_viridistriga_2	Kentropyx_viridistriga_1	Kentropyx_paulensis_2	Kentropyx_sp_1	Kentropyx_paulensis_1	Kentropyx_vanzoi_2	Kentropyx_pelviceps	Kentropyx_calcarata_2	Kentropyx_calcarata_1	Kentropyx_vanzoi_1
	;
END;

BEGIN CHARACTERS;
	TITLE M4220;
	DIMENSIONS NCHAR=446;
	FORMAT DATATYPE = DNA MISSING = ? GAP = - ;
	MATRIX
		Kentropyx_altamazonica_2       AACGGCCGCGGGATCCTACACCGTGCAAAGGTAGCATAATCACTTGTCACCTAAATAGTGACTAGTATGAATGGCCCAATGAGGACTTTTCTGTCTCTTGTAACCAATCAATGAAACTGATTCCCCAGTCCAAAAGCTGGGATAAAACCACAAGACGAAAAGACCCTGTGGAACTTTTAAGTGCTAATCATT-ATATGATAAAGACACTTTTAGTTGGGGCAACTTTGGAACAAAGTAAAACTTCCAATTAAATTT-T-ATTACA-CCTTAATCTAGGCACTACACACCAACATTAAA-AA-TACC-C---TTGACCCAGTACTACTGATTAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTTAGAGTCCCAATCGATGAGCGGGGCTTACGACCTCGATGTTGGATCA-GGCCCCCCAACAGTGCAGCAGCTGT
		Kentropyx_altamazonica_1       AACGGCCGCGGGATCCTACACCGTGCAAAGGTAGCATAATCACTTGTCACCTAAATAGTGACTAGTATGAATGGCCTAATGAGGACTTTTCTGTCTCTTGTAACCAATCAATGAAACTGATCTCCCAGTCCAAAAGCTGGGATAAAACCACAAGACGAAAAGACCCTGTGGAACTTTTAAGTGCTAGTCATT-ATATGATAGAAACACTTTTAGTTGGGGCAACTTTGGAACAAAGTAAAACTTCCAATTAAATTT-T-ATTATA-CCTTAATCTAGGTATTACACACCGACATT-AA-AA-TACT-C---TTGACCCAGTACTACTGATTAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTTAGAGTCCCAATCGACGAGTGGGGCTTACGACCTCGATGTTGGATCA-GGCCCCCCAACAGTGCAGCAGCTGT
		Cnemidophorus_gramivagus       AACGGCCGCGGGATCCTACACCGTGCAAAGGTAGCATAATCACTTGTCACCTAAATAGTGACTAGTATGAATGGCCCAATGAGGACTTTCCTGTCTCTTGTAACCAATCAATGAAACTGATCTCCCAGTCCAAAAGCTGGAATAAAGCCACAAGACGAAAAGACCCTGTGGAACTTTTAAGTGTTAGTCAACAACATGATA-AACCACTTTTAGTTGGGGCAACTTTGGAATAAAACAAAACTTCCAATAAAGGGTACAACT-CACCCTAAATCTAGAC-ACACACGCCAAAATT-TA-GACC-CA-GA-ATCGACCCAGTACCACTGACAAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTTAGAGTCCCAATCGACGAG-GGGGCTTACGACCTCGATGTTGGATCAGGGCACCCAAACAGTGCAGCAGCTGT
		Ameiva_ameiva                  AACGGCCGAGGGATCCTACACCGTGCAAAGGTAGCATAATCATTTGTCATCTAAATAGTGACTAGTATGAATGGCCCAATGAGGACTTTCCTGTCTCTTGTAACCAATCAATGAAACTGATCTTTCAGTCCAAAAGCTGAAATATTTACACAAGACGAAAAGACCCTGTGGAAC-TTTAAGTGCTAATCAAC-ACATGACACAGACACTTTTAGTTGGGGCAACTTTGGAACAAAACAAAACTTCCAATACAAAGACCACCT-C-CGACAAACCAAGGC-CCACACGCCAATGTT-T--GCCT-CT-TATACTGATCCAGTATTACTGATCAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTTAGAGTCCCAATCGACGAGCGGGGCTTACGACCTCGATGTTGGATCAGGCCCCCCAAACAGTGCAGCAGCTGT
		Kentropyx_striata              AACGGCCGCGGGATCCTACACCGTGCAAAGGTAGCATAATCACTTGTCACCTAAATAGTGACTAGTATGAATGGCCCAATGAGGACTTTACTGTCTCTTGTAATTGATCAATGAAACTGATCTCTCAGTCCAAAAGCTGAGATAAAACCACAAGACGAAAAGACCCTGTGGAACTTTTAAGTGTTAATCATC-GCATGACACAGCCACTTTTAGTTGGGGCAACTTTGGAACAAAACAAAACTTCCAATTAAATTTAT-CAT-TA-CCTTAATTTAGGT-CCACACACCAATATTTTA-AA-TAAT-T---TTGACCCAGTATTACTGATTAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTTAGAGTCCCAATCGACGAGTGGGGCTTACGACCTCGATGTTGGATCA-GGCCCCCCAACAGTGCAGCAGCTGT
		Kentropyx_sp_2                 AACGGCCGCGGGATCCTACACCGTGCAAAGGTAGCATAATCATTTGTCACCTAAATAGTGACTAGTATGAATGGCCTAATGAGGACTTTTCTGTCTCTTGTAACCAATCAATGAAACTGATCCCCCAGTCCAAAAGCTGGGATAAAATCACAAGACGAAAAGACCCTGTGGAACTTTTAAGTATAAATCACC-ATATGATA-TAATACTTTTAGTTGGGGCAACTTTGGAACAAAATAAAACTTCCAATTAAATTTGT-C-T-AA-CCTTAATCTAGGT-TTACACACCAACATTAAA-AA-T-TA-C--ACTGACCCAGTCCTACTGACTAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTTAGAGTCCCAATCGACGAGCGGGGCTTACGACCTCGATGTTGGATCAGGGCCCCCCAACAGTGCAGCAGCTGT
		Kentropyx_viridistriga_2       AACGGCCGCGGGATCCTACACCGTGCAAAGGTAGCATAATCACTTGTCACCTAAATAGTGACTAGTATGAATGGCCTAATGAGGACTTTTCTGTCTCTTGTAACCAATCAATGAAACTGATCTCCCAGTCCAAAAGCTGGAATAAAAACACAAGACGAAAAGACCCTGTGGAACTTTTAAGTATAAATCACC-ACATGATATTAATGCTTTTAGTTGGGGCAACTTTGGAACAAAATAAAACTTCCAATTAAATTTAC-C-T-TA-CCTTAATTTAGGC-TTACACGCCAACATTAAA-GA-TGTT-C---TTGACCCAGTCCTACTGATTAAAGAAATAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTAAGAGTCCCAATCGACGAGTGGGGCTTACGACCTCGATGTTGGATCAGGGCCCCCCAACAGTGCAGCAGCTGT
		Kentropyx_viridistriga_1       AACGGCCGCGGGATCCTACACCGTGCAAAGGTAGCATAATCACTTGTCACCTAAATAGTGACTAGTATGAATGGCCTAATGAGGACTTTTCTGTCTCTTGTAACCAATCAATGAAACTGATCTCCCAGTCCAAAAGCTGGAATAAAAACACAAGACGAAAAGACCCTGTGGAACTTTTAAGTATAAATCACC-ACATGATATTAATGCTTTTAGTTGGGGCAACTTTGGAACAAAATAAAACTTCCAATTAAATTTAC-C-T-TA-CCTTAATTTAGGC-TTACACGCCAACATTAAA-GA-TGTT-C---TTGACCCAGTCCTACTGATTAAAGAAATAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTAAGAGTCCCAATCGACGAGTGGGGCTTACGACCTCGATGTTGGATCAGGGCCCCCCAACAGTGCAGCAGCTGT
		Kentropyx_paulensis_2          AACGGCCGCGGGATCCTACACCGTGCAAAGGTAGCATAATCATTTGTCACCTAAATAGTGACTAGTATGAATGGCCTAATGAGGACTTTTCTGTCTCTTGTAACCAATCAATGAAACTGATCCCCCAGTCCAAAAGCTGGGATAAAATCACAAGACGAAAAGACCCTGTGGAACTTTTAAGTATAAATCACC-ACATGATA-TAATACTTTTAGTTGGGGCAACTTTGGAACAAAATAAAACTTCCAGTTAAATTTGT-C-T-GA-CCTTAATCTAGGT-TTACACACCAACATTAAA-AA-T-TA-C--ACTGACCCAGTCCTACTGACTAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTTAGAGTCCCAATCGACGAGCGGGGCTTACGACCTCGATGTTGGATCAGGGCCCCCCAACAGTGCAGCAGCTGT
		Kentropyx_sp_1                 AACGGCCGCGGGATCCTACACCGTGCAAAGGTAGCATAATCATTTGTCACCTAAATAGTGACTAGTATGAATGGCCTAATGAGGACTTTTCTGTCTCTTGTAACCAATCAATGAAACTGATCCCCCAGTCCAAAAGCTGGGATAAAATCACAAGACGAAAAGACCCTGTGGAACTTTTAAGTATAAATCACC-ATATGATA-TAATACTTTTAGTTGGGGCAACTTTGGAACAAAATAAAACTTCCAATTAAATTTGT-C-T-AA-CCTTAATCTAGGT-TTACACACCAACATTAAA-AA-T-TA-C--ACTGACCCAGTCCTACTGACTAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTTAGAGTCCCAATCGACGAGCGGGGCTTACGACCTCGATGTTGGATCAGGGCCCCCCAACAGTGCAGCAGCTGT
		Kentropyx_paulensis_1          AACGGCCGCGGGATCCTACACCGTGCAAAGGTAGCATAATCATTTGTCACCTAAATAGTGACTAGTATGAATGGCCTAATGAGGACTTTTCTGTCTCTTGTAACCAATCAATGAAACTGATCCCCCAGTCCAAAAGCTGGGATAAAATCACAAGACGAAAAGACCCTGTGGAACTTTTAAGTATAAATCACC-ACATGATA-TAATACTTTTAGTTGGGGCAACTTTGGAACAAAATAAAACTTCCAGTTAAATTTGT-C-T-GA-CCTTAATCTAGGT-TTACACACCAACATTAAA-AA-T-TA-C--ACTGACCCAGTCCTACTGACTAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTTAGAGTCCCAATCGACGAGCGGGGCTTACGACCTCGATGTTGGATCAGGGCCCCCCAACAGTGCAGCAGCTGT
		Kentropyx_vanzoi_2             AACGGCCGCGGGATCCTACACCGTGCAAAGGTAGCATAATCACTTGTCACCTAAATAGTGACTAGTATGAATGGCCTAATGAGGACTTTTCTGTCTCTTGTAACCAATCAATGAAACTGATTTCCCAGTTCAAAAGCTGGGATAAAACCACAAGACGAAAAGACCCTGTGGAACTTTTAAATGCCAGTCACC-ACATGAT-GAAACACTTTTAGTTGGGGCAACTTTGGAACAAAATAAAACTTCCAATT-CATTTAT-CTT-TA-CCTTAATCTAGGT-TTACACGCCGACATTAAATAA-TGCTCC---TTGACCCAGTCCTACTGATTAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTAAGAGTCCCAATCGACGAGCGGGGCTTACGACCTCGATGTTGGATCAGGGCCCCCCAACAGTGCAGCAGCTGT
		Kentropyx_pelviceps            ?ACGGCCGCGGGATCCTACACCGTGCAAAGGTAGCATAATCACTTGTCACCTAAATAGTGACTAGTATGAATGGCCTAATGAGGACTTTACTGTCTCTTATAACCAATCAATGAAACTGATCCTCCAGTCCAAAAGCTGGGATAAAGCCACAAGACGAAAAGACCCTGTGGAACTTTCAAGTACCAATCATT-ACATGAC-TAAGCACTTTTAGTTGGGGCAACTTCGGAATAAAGTAAAACTTCCAATTAAACTTAC-CCT-TA-CCTTAATCTAGGT-TTACACACCAACATT-CATAA-CATT-C---TCGACCCAGTATTACTGATTAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTTAGAGTCCCAATCGACGAGTGGGGCTTACGACCTCGATGTTGGATCA-GGCCCCCCAACAGTGCAGCAGCTGT
		Kentropyx_calcarata_2          AACGGCCGCGGGATCCTACACCGTGCAAAGGTAGCATAATCACTTGTCACCTAAATAGTGACTAGTATGAACGGCCCAATGAGGACCTTACTGTCTCTTGTAACCAATCAATGAAACTGATCTTCTAGTTCAAAAGCTAGAATAAAAACACAAGACGAAAAGACCCTGTGGAACTTTTAAGTGTCAACCATC-ATATGATATAACCACTTTTAGTTGGGGCAACTTTGGAATAAAGAAAAACTTCCAATTAATCTTAT-CTT-T--CCCTAATCTAGGT-CTACATACCAACATT-AATGA-TACT-T---CTGACCCAGTCCTACTGATTAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTTAGAGTCCCAATCGACGAGTGGGGCTTACGACCTCGATGTTGGATCAGGGCCCCCCAGCAGTGCAGCAGCTGC
		Kentropyx_calcarata_1          AACGGCCGCGGGATCCTACACCGTGCAAAGGTAGCATAATCACTTGTCACCTAAATAGTGACTAGTATGAATGGCCCAATGAGGACCTTACTGTCTCTTGTAACCAATCAATGAAACTGATCTTCTAGTCCAAAAGCTAGAATAAAAACACAAGACGAAAAGACCCTGTGGAACTTTTAAGTGTCAATCATC-ATATGATATAACCACTTTTAGTTGGGGCAACTTTGGAATAAAGAAAAACTTCCAATTATTTTTAT-CTT-T--CCCTAATCTAGGT-CCACATACCAAAATT-AATGA-TACT-T---CTGACCCAGTCCTACTGATTAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTTAGAGTCCCAATCGACGAGTGGGGCTTACGACCTCGATGTTGGATCA-GGCCCCCCAACAGTGCAGCAGCTGC
		Kentropyx_vanzoi_1             AACGGCCGCGGGATCCTACACCGTGCAAAGGTAGCATAATCACTTGTCACCTAAATAGTGACTAGTATGAATGGCCTAATGAGGACTTTTCTGTCTCTTGTAACCAATCAATGAAACTGATTTCCCAGTTCAAAAGCTGGGATAAAACCACAAGACGAAAAGACCCTGTGGAACTTTTAAATGCCAGTCACC-ACATGAT-GAAACACTTTTAGTTGGGGCAACTTTGGAACAAAATAAAACTTCCAATT-CATTTAT-CTT-TA-CCTTAATCTAGGT-TTACACGCCGACATTAAATAG-TGCT-C---TTGACCCAGTCCTACTGATTAAAGAAACAAGCTACCCCAGGGATAACAGCGCCATCCCCTCTAAGAGTCCCAATCGACGAGCGGGGCTTACGACCTCGATGTTGGATCAGGGCCCCCCAACAGTGCAGCAGCTGT
	;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions = 
 N: 1 - 446 ; 
 CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;