#NEXUS BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=46; TAXLABELS Aegilops_tauschii_subsp._tauschii 'Aegilops tauschii subsp. tauschii_B' 'Arabidopsis thaliana AG12_like_N' 'Arabidopsis thaliana AGL22_SVP_N' 'Arabidopsis thaliana AP3_NP_1910' 'Arabidopsis thaliana PI_NP_19752' 'Arabidopsis thaliana SEP1_NP_568' 'Brachypodium distachyon AGL14_li' 'Hordeum vulgare APETALA3_like_AA' 'Hordeum vulgare PISTILLATA_like' 'Hordeum vulgare WM16_ACB45307.1' 'Hordeum vulgare WM29B_ACB45306.1' Leymus_chinensis_LcMADS1 Leymus_chinensis_LcMADS10 Leymus_chinensis_LcMADS11 Leymus_chinensis_LcMADS2 Leymus_chinensis_LcMADS3 Leymus_chinensis_LcMADS4 Leymus_chinensis_LcMADS5 Leymus_chinensis_LcMADS6 Leymus_chinensis_LcMADS7 Leymus_chinensis_LcMADS8 Leymus_chinensis_LcMADS9 'Oryza sativa OsMADS14_P0C5B1.1' 'Oryza sativa OsMADS16_Q944S9.2' 'Oryza sativa OsMADS18_Q0D4T4.1' 'Oryza sativa OsMADS22_Q9XJ66.1' 'Oryza sativa OsMADS26_A2YQK9.2' 'Oryza sativa OsMADS2_Q40702.1' 'Oryza sativa OsMADS32_Q8S151.1' 'Oryza sativa OsMADS4_Q40703.3' 'Oryza sativa OsMADS55_AAQ23144.2' 'Oryza sativa OsMADS58_BAE54300.1' 'Oryza sativa OsMADS5_A2Y9P0.1' 'Oryza sativa OsMADS65_Q9XJ61.1' 'Triticum aestivum AP1_AAO72630.1' 'Triticum aestivum APETALA3_like' 'Triticum aestivum PISTILLATA_lik' 'Triticum aestivum PISTILLATA_lik2' 'Triticum aestivum TaAGL10_ABF579' 'Triticum aestivum TaAGL11_ABF579' 'Triticum aestivum TaAGL14_ABF579' 'Triticum aestivum TaAGL25_ABF579' 'Triticum aestivum TaAGL32_ABF579' 'Triticum aestivum TaAGL42_ABF579' 'Triticum aestivum TaAGL8_ABF5794' ; END; BEGIN CHARACTERS; TITLE 'MADS-box family'; DIMENSIONS NCHAR=303; FORMAT DATATYPE = Protein GAP = - MISSING = ?; MATRIX Aegilops_tauschii_subsp._tauschii -MARGKVQLRRIENPVHRQVTFCKRRAGLLKKAR-ELSVLCDADIGIIIFSAHGKLYDL--ATTG----TMDGLIERYKSASGEGMTGDGC----GDQR-------------------VDPKQEAMVLKQEIDLLQKGLRYIYGNRANEHMNVDELNALERYLEIWMFNIRSAKMQIMIQEIQALKSK-----EGMLKAANEILQEKIVEQH-GLIDVGMTIADQQNGHFS-------------------TVPMLEEITNPLTILSGYSTCRGSEMGYSF?---------------------- 'Aegilops tauschii subsp. tauschii_B' -MGRGKIEIKRIENSSNRQVTFAKRRAGLVKKAR-EIGVLCDAEVGVVIFSSAGKLYDFWTPKTT-----LPRILEKYQTNSGKILWDEKHKS---------------------------ISAEIDRVKKENDNMQIELRHMKGEDVNSLQ-PKELIAIEEALTNGQTNLRDKMMDHWKMH----RRN-----EKMLEEEHKLLALRMHQQD-DLSSGMREMELGYHQG--------------------------RDFTSQMPFTFRLQPSHPNLQEDK?----------------------- 'Arabidopsis thaliana AG12_like_N' -MARGKIQLKRIENPVHRQVTFCKRRTGLLKKAK-ELSVLCDAEIGVVIFSPQGKLFEL--ATKG----TMEGMIDKYMKCTGGGRGSSSATFTAQEQLQPP---------------NLDPKDEINVLKQEIEMLQKGISYMFGG-GDGAMNLEELLLLEKHLEYWISQIRSAKMDVMLQEIQSLRNK-----EGVLKNTNKYLLEKIEENNNSILDANFAVMETN-------------------------------YSYPLTMPS--------EI-FQF----------------------- 'Arabidopsis thaliana AGL22_SVP_N' MARE-KIQIRKIDNATARQVTFSKRRRGLFKKAE-ELSVLCDADVALIIFSSTGKLFEFCS-S-S-----MKEVLERHNLQSKNLEKLD-QPSLELQ---------------------LVENSDHARMSKEIADKSHRLRQMRGEELQGLD-IEELQQLEKALETGLTRVIETKSDKIMSEISELQKK-----GMQLMDENKRLRQQGTQLTEENERLGMQICNNVHA-------------HGGAESENAAVYEEGQSSESITNAGNSTGAP--VDSESSDTSLRLGLPYGG----------- 'Arabidopsis thaliana AP3_NP_1910' -MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAH-ELTVLCDARVSIIMFSSSNKLHEYISPNTT-----TKEIVDLYQTISDVDVWATQYER---------------------------MQETKRKLLETNRNLRTQIKQRLGECLDELD-IQELRRLEDEMENTFKLVRERKFKSLGNQIETTKKK-----NKSQQDIQKNLIHELELRAEDPHYGLVDN--GGDYDSV-------------------LGYQIEGSRAYALRFHQNHHHYYPNHGLHAPSASDIITFHLLE---------- 'Arabidopsis thaliana PI_NP_19752' -MGRGKIEIKRIENANNRVVTFSKRRNGLVKKAK-EITVLCDAKVALIIFASNGKMIDYCCPSMD-----LGAMLDQYQKLSGKKLWDAKHEN---------------------------LSNEIDRIKKENDSLQLELRHLKGEDIQSLN-LKNLMAVEHAIEHGLDKVRDHQMEILISK----RRN-----EKMMAEEQRQLTFQLQQQEMAIASNARGMMMRDHDG---------------------------------QFGYRVQPIQPNLQEKIMSLVID------------------ 'Arabidopsis thaliana SEP1_NP_568' -MGRGRVELKRIENKINRQVTFAKRRNGLLKKAY-ELSVLCDAEVALIIFSNRGKLYEFCS-SSN-----MLKTLDRYQKCSYGS--IEVNNKPAKE--------------------LENSYREYLKLKGRYENLQRQQRNLLGEDLGPLN-SKELEQLERQLDGSLKQVRSIKTQYMLDQLSDLQNK-----EQMLLETNRALAMKLDDMIGVRSHHMGGGGGWEGG--------EQNVTYAHHQAQSQGLYQPLECNPTLQMG-YDNPVCSEQITATTQAQAQQGNGYIPGWML------- 'Brachypodium distachyon AGL14_li' MVRRGRVELRRIEDRTSRQVRFSKRRSGLFKKAF-ELALLCDAEVALLVFSPAGKLYEYSS-SLS-----IEGTYDRYQQFAGAVRNTY-------------------------------QGGASTSNDEDPSNLQSRLREITAWSVHNN--------------------ADNADASNLEKLEKLLTD-----A------KRALAKQNSNRS-----------------------------------------ATGENSNGPTGE--GGNA?------------------------------- 'Hordeum vulgare APETALA3_like_AA' -MGRGKIEIKRIENATNRQVTYSKRRSGIMKKAR-ELTVLCDAQVAIIMFSSTGKYHEFCSTGTD-----IKGIFDRYQQAIGTSLWIEQYEN---------------------------MQRTLSHLKDINRNLRTEIRQRMGEDLDALE-FEELRGLEQNVDAALKEVRQRKYHVITTQTETYKKK-----VKHSQEAYKNLQQELGMR-EDPAYGFVDNPAAGGWDGV-------------------AAVAMGGGSAADMYAFRVVPSQPNLHGMAYGGSHDLRHLRLG----------- 'Hordeum vulgare PISTILLATA_like' -MGRGKIEIKRIENQSNRQVTFSKRKNGILKKAK-EISVLCDAEVGVVVFSSAGKLYDFCSPKTS-----LSRILEKYQTNSGKILWDEKHKS---------------------------LSAEIDRIKKENDNMQIELRHLKGEDLNSLQ-PKELIMIEEALDNGLTSLHEKQMEHYDRL----MKH-----GKMLEDENKLLAFKVHQHDIALSGSMRDLELGYHPD--------------------------RDFAAQMPITFRVQPSHPNLQEDT?----------------------- 'Hordeum vulgare WM16_ACB45307.1' -MGRGRSEIKRIDNPTQRQSTFYKRRDGLFKKAR-ELAVLCDADLLLLLFSASGKLYQYLAPTAP----SVKEFVERYEAATHTKVWSDIR-----QER----------------------RAELEKVAKMCDLLEKELRFMTVDDGEQYT-VPSLAALEHNLEAAMHKVRSEKDRKIGGEMTYLENM---------IRGKQAERYGLCDKLAHAQSLKVAEGGSTS------------------------------LNNGLDLKLGFN---------------------------------- 'Hordeum vulgare WM29B_ACB45306.1' MG-RGRIEIKRIENTTNRQVTFCKRRNGLLKKAY-ELSVLCDAEVALVVFSSRGRLYEY--SNN-----SVKATIERYKKANSDTSNSGTVAEVNAQYY----------------------QQESSKLRQQISSLQNSNSRSLVRDSVSTMTLRDLKQLEGRLEKGIAKIRARKNELMYAEVEYMQKR-----EMELHNDNIYLRSKVSENERGQQPMNMMASGSTSSEYD-------------------HMVAPYDSRNFLQVNMQQQQHYSQQLQPTALQLGQQYFN?------------- Leymus_chinensis_LcMADS1 -MGRGKVQLKRIENKINRQVTFSKRRSGVLKKAH-EISVLCDAEVGLIIFSTKGKLYEFST-ESC-----MDKILERYERYSYAEK--VLASSESEI--------------------QGNWCHEYRKLKAKVETIQKCQKHLMGEDLDSLN-LKELQQLEQQLESSLKHIRSRKNQLMHESISELQKK-----ERSLQEENKVLQKELVEKQKAQ------AAQQDQ--------------TQPQTSSSSS-FMMRNAPPAANTSTHPAAAG-ERTEDAAVQPQAPARPGLPPWMVSHING?- Leymus_chinensis_LcMADS10 -MGRGRSEIKRIDNPTQRQSTFYKRRDGLFKKAR-ELAVLCDADLLLLLFSASGKLYQYLAPTVP----SVKEFVERYEAATHTKVWSDIR-----QER----------------------RAELEKVAKMCDLLEKELRFMTVDDGEQYT-VPSLAALEHNLEAAMHKVRSEKDRKIGGEMTYLENM---------IRGKQAERYGLCDKLAHAQSLKVVEGGSTS------------------------------LNNGLDLKLGFN?--------------------------------- Leymus_chinensis_LcMADS11 -MARGKVQLRRIENSVHRQVTFCKCRAGLLKKSQGALRPLRRRHWHHHLLCTR-QAHDL--ATTG----TMDGLIERYKSANGEGMTADGR----GDQR-------------------VDPKQEAMVLKQEIDLLQKGLRYIYGNRANEHMNVDELNALERYLEIWMFNIRSAKMQIMIQEIQALKSK-----EGMLKAANEILQEKIVEQH-GLIDVGMTIADQQNGHFS-------------------TVPLIEEITNPLTILSGYSTCRGSEMGYSF?---------------------- Leymus_chinensis_LcMADS2 -MGRGPVQLRRIENKINRQVTFSKRRSGLLKKAH-EISVLCDAEVALIVFSTKGKLYEYSSQDSS-----MDVILERYQRYSFEER--AVLDPSIGD--------------------QANWGDEYISLKIKLDALQKSQRQLLGEQLDPLT-TKELQQLEQQLDSSLKHIRSRKNQLLFESISELRKK-----EKSLKDQNGVLQKHLVEIEKEKNNGLSNIHHREQLNGATNIHHQEQLNGATTSSPSPTPATAEDSMATPNIGPYQSRE--GGDPEPQPSPAQANNSNLPPWMLRTISNR? Leymus_chinensis_LcMADS3 -MGRGKIEIKRIENQSNRQVTFSKRKNGILKKAK-EISVLCDAEVGVVIFSSAGKLYDFCSPKTS-----LSRILEKYQTNSGKILWDEKHKS---------------------------LSAEIDRIKKENDNMQIELRHLKGEDLNSLQ-PKELIMIEEALDNGLTSLHEKQMEHYDRL----MKH-----GKMLEDENKLLAFKVHQHDIALSGSMRDLELGYHPD--------------------------RDFAAQMPITFRVQPSHPNLQEDS?----------------------- Leymus_chinensis_LcMADS4 -MGRGKIEIKRIENATNRQVTYSKRRSGIMKKAR-ELTVLCDAQVAIIMFSSTGKYHEFCSTGTD-----IKGIFDRYQQAIGTSLWIEQYGN---------------------------MQRTLSHLKDINRNLRTEIRQRMGEDLDALE-FEELRDLEQNVDAALKEVRQRKYHVITTQTETYKKK-----VKHSQEAYKNLQQELGMR-EDPAYGFVDNPAAGGWDGV-------------------AAVAMGGGSAADMYAFRVVPSQPNLHGMAYGGSHDLR---LG?---------- Leymus_chinensis_LcMADS5 -MGRGKIEIKRIENSSNRQVTFAKRRAGLVKKAR-EIGVLCDAEVGVVIFSSAGKLYDFWTPKTT-----LPRILEKYQTNSGKILWDEKHKS---------------------------ISAEIDRVKKENDNMQIELRHMKGEDVNSLQ-PKELIAIEEALTNGQTNLRDKMMEHWKMH----RRN-----EKMLEEEHKLLALRMHQQDVELSSGMREMELGYHQG--------------------------RDFTSQMPFTFRVQPSHPNLQEDK?----------------------- Leymus_chinensis_LcMADS6 MG-RGRIEIKRIENTTNRQVTFCKRRNGLLKKAY-ELSVLCDAEVALIVFSSRGRLYEY--SNN-----SVKATIERYKKANSDTSNSGTVAEVNAQYY----------------------QQESSKLRQQISSLQNSN-RSLVRDSVSTMTLRDLKQLEGRLEKGISKIRARKNELMYAEVEYMQKR-----EMELHNDNIYLRCKVSENERGQQPMNMMASGSTSSEYD-------------------HMVPPYDSRNFLQANIMQFTHAR?----------------------------- Leymus_chinensis_LcMADS7 -MGRGKVELKRIDNKISRQVTFAKRRNGLLKKAY-ELSVLCDAEVALIIFSSRGRLFEFST-SSC-----MYKTLERYRSCNFNS---EATATPETE--------------------LNN-YQEYLKLKTRVEFLQTTQRNLLGEDLGPLS-MKELEQLENQIEISLKQIRSTKSQQSLDQLFELKRK-----EQQLQDVNKDLRKKIQETSAESVFQMS---CQDVG--------PSG------HANQQELFHPAACDPSLRMG-YHQNFLDQLNKE?------------------------ Leymus_chinensis_LcMADS8 MARRGRVELRRIEDRTSRQVRFSKRRAGLFKKAF-ELSLLCDAEVALLVFSPAGKLYEYSS-S-S-----IEGTYDRYQQFAVPGRNLD-------------------------------QEDATVSNNEDPSNMQSRLSEIAAWSLDNN--------------------ADDSDASSLEKLEKLLKD-----ALRITESKKTLAKQNSGGS-----------------------------------------TSGESSNGPRGQENGRKA?------------------------------- Leymus_chinensis_LcMADS9 MARE-RREIKRIESAAARQVTFSKRRRGLFKKAE-ELSVLCDADVALIVFSSTGKLSQFAS-S-S-----MNEIIDKYSTHSKNLGKTD-QPTLDLN----------------------LEHSKYANLNDQLAEASLRLRQMRGEELEGLS-VDELQQLEKNLETGLHRVVQTKDQQFLEQINELDRK-----SSQLAEENMKLRNQVAQVP----TVGKQVVA---------------------DTEN-VIAEDGQSSESVMTALHSGSSQ--DNDDGSDVSLKLGLPCAPCK?-------- 'Oryza sativa OsMADS14_P0C5B1.1' -MGRGKVQLKRIENTINRQVTFSKRRSGLLKKAN-EISVLCDAEVALIIFSTKGKLYKYAT-DSC-----MDKILERYERYSYAEK--VLISAESDT--------------------QGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLN-LKELQQLEQQLENSLKHIRSRKSQLMLESINELQRK-----EKSLQEENKVLQKELVEKQKVQKQ----QVQWDQ--------------TQPQTSSSSSSFMMREALPTTNISNYPAAAG-ERIEDVAAGQPQHVRIGLPPWMLSHING-- 'Oryza sativa OsMADS16_Q944S9.2' -MGRGKIEIKRIENATNRQVTYSKRRTGIMKKAR-ELTVLCDAQVAIIMFSSTGKYHEFCSPSTD-----IKGIFDRYQQAIGTSLWIEQYEN---------------------------MQRTLSHLKDINRNLRTEIRQRMGEDLDGLE-FDELRGLEQNVDAALKEVRHRKYHVITTQTETYKKK-----VKHSYEAYETLQQELGLR-EEPAFGFVDN-TGGGWDG-----------------------GAGAGAAADMFAFRVVPSQPNLHGMAYGGNHDLR---LG----------- 'Oryza sativa OsMADS18_Q0D4T4.1' -MGRGPVQLRRIENKINRQVTFSKRRNGLLKKAH-EISVLCDADVALIVFSTKGKLYEFSS-HSS-----MEGILERYQRYSFDER--AVLEPNTED--------------------QENWGDEYGILKSKLDALQKSQRQLLGEQLDTLT-IKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKK-----EKSLKNQNNVLQK-LMETEKEKNNAIINTNREEQ-------------NGATPSTSSPTPVTAPDPIPTTNNSQSQPRG--SGESEAQPSPAQAGNSKLPPWMLRTSHT-- 'Oryza sativa OsMADS22_Q9XJ66.1' MARE-RREIKRIESAAARQVTFSKRRRGLFKKAE-ELSVLCDADVALIVFSSTGKLSHFAS-S-S-----MNEIIDKYNTHSNNLGKAE-QPSLDLN----------------------LEHSKYAHLNEQLAEASLRLRQMRGEELEGLS-IDELQQLEKNLEAGLHRVMLTKDQQFMEQISELQRK-----SSQLAEENMQLRNQVSQIS----PAEKQVV----------------------DTEN-FVTE-GQSSESVMTALHSGSSQSQDNDDGSDVSLKLGLPCGAWK--------- 'Oryza sativa OsMADS26_A2YQK9.2' -MARGKVQLRRIENPVHRQVTFCKRRAGLLKKAR-ELSILCEADIGIIIFSAHGKLYDL--ATTG----TMEELIERYKSASGE--QANAC----GDQR-------------------MDPKQEAMVLKQEINLLQKGLRYIYGNRANEHMTVEELNALERYLEIWMYNIRSAKMQIMIQEIQALKSK-----EGMLKAANEILQEKIVEQN-GLIDVGMMVADQQNGHFS-------------------TVPLLEEITNPLTILSGYSTCRGSEMGYSF----------------------- 'Oryza sativa OsMADS2_Q40702.1' -MGRGKIEIKRIENSTNRQVTFSKRRSGILKKAR-EISVLCDAEVGVVIFSSAGKLYDYCSPKTS-----LSRILEKYQTNSGKILWDEKHKS---------------------------LSAEIDRIKKENDNMQIELRHLKGEDLNSLQ-PKELIMIEEALDNGIVNVNDKLMDHWERH----VRT-----DKMLEDENKLLAFKLHQQDIALSGSMRDLELGYHPD--------------------------RDFAAQMPITFRVQPSHPNLQENN------------------------ 'Oryza sativa OsMADS32_Q8S151.1' -MGRGRSEIKRIENPTQRQSTFYKRRDGLFKKAR-ELAVLCDADLLLLLFSASGKLYHFLSPTVP----SVREFVERYEATTHTKVWADIR-----QER----------------------RAELEKVGSMCDLLEKQLRFMTVDDGEEYT-VPSLEALEHNLEAAMRKVRSEKDRKIGGEICYLQNI---------IRGRQEERYGLCDKIAHAQTLKDVECGSTS------------------------------LSNGLDLKLGFN---------------------------------- 'Oryza sativa OsMADS4_Q40703.3' -MGRGKIEIKRIENSTNRQVTFSKRRAGILKKAR-EIGVLCDAEVGVVIFSSAGKLSDYCTPKTTSVFPPLSRILEKYQTNSGKILWDEKHKS---------------------------LSAEIDRVKKENDNMQIELRHMKGEDLNSLQ-PKELIAIEEALNNGQANLRDKMMDHWRMH----KRN-----EKMLEDEHKMLAFRVHQQEVELSGGIRELELGYHHDD-------------------------RDFAASMPFTFRVQPSHPNLQQEK------------------------ 'Oryza sativa OsMADS55_AAQ23144.2' MARE-RREIRRIESAAARQVTFSKRRRGLFKKAE-ELAVLCDADVALVVFSSTGKLSQFAS-S-N-----MNEIIDKYTTHSKNLGKTDKQPSIDLNFFLIILLRTYTNSYAYIHLLLQLEHSKCSSLNEQLAEASLQLRQMRGEELEGLS-VEELQQMEKNLEAGLQRVLCTKDQQFMQEISELQRK-----GIQLAEENMRLRDQMPQVP----TAG-LAVP---------------------DTEN-VLTEDGQSSESVMTALNSGSSQ--DNDDGSDISLKLGLP-------------- 'Oryza sativa OsMADS58_BAE54300.1' IGSRGKIEIKRIENTTNRQVTFCKRRSGLLKKAY-ELSVLCDAEVALVVFSSRGRLYEY--SNN-----SVKETIERYKKANSDTSNASTVAEINAQHY----------------------QQEAAKLKQQITNLQNSN-RTLVGDNITTMNHRELKQLEGRLDKGLGKIRARKNELLCAEIEYMQRR-----ETELQNDNMYLKSKVAESERGLQTVNMMGSASTS-EYV-------------------QNMIHYDPRNFLQFNIMHQPQYYPEQEDRKAFMSDER---------------- 'Oryza sativa OsMADS5_A2Y9P0.1' -MGRGKVELKRIENKISRQVTFAKRRNGLLKKAY-ELSVLCDAEVALIIFSTRGRLFEFST-SSC-----MYKTLERYRSCNYNLNSCEASAALETE--------------------LSN-YQEYLKLKTRVEFLQTTQRNLLGEDLVPLS-LKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRK-----EQQLQDANKDLKRKIQETSGENMLHIS---CQDVG--------PSG---HASEANQ-EFLHHAICDPSLHIG-YQA-YMDHLNQ-------------------------- 'Oryza sativa OsMADS65_Q9XJ61.1' MARRGRVQLRRIEDKASRQVRFSKRRAGLFKKAF-ELALLCDVEVALLVFSPVGKLYEYSS-S-S-----IEGTYDRYQQFAGARRDLN-------------------------------EGSTSINSDENAS-IHSRLRDITAWSLQNN--------------------ADESDANQLEKLEKLLTN-----ALRDTKSKKMLAKQNGEGS-----------------------------------------RSRANSSGSRGQEEGSA--------------------------------- 'Triticum aestivum AP1_AAO72630.1' -MGRGKVQLKRIENKINRQVTFSKRRSGLLKKAH-EISVLCDAEVGLIIFSTKGKLYEFST-ESC-----MDKILERYERYSYAEK--VLVSSESEI--------------------QGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLN-LKELQQLEQQLESSLKHIRSRKNQLMHESISELQKK-----ERSLQEENKVLQKELVEKQKAH------AAQQDQ--------------TQPQTSSSSSSFMLRDAPPAANTSIHPAAAG-ERAEDAAVQPQAPPRTGLPPWMVSHING-- 'Triticum aestivum APETALA3_like' -MGRGKIEIKRIENATNRQVTYSKRRSGIMKKAR-ELTVLCDAQVAIIMFSSTGKYHEFCSTGTD-----IKGIFDRYQQAIGTSLWIEQYEN---------------------------MQRTLSHLKDINRNLRTEIR--MGEDLDALE-FEELRDLEQNVDAALKEVRQRKYHVITTQTETYKKK-----VKHSQEAYKNLQQELGMR-EDPAYGFVDNPAAGGWDGV-------------------AAVAMGGGSAADMYAFRVVPSQPNLHGMAYGGSHDLR---LG----------- 'Triticum aestivum PISTILLATA_lik' -MGRGKIEIKRIENSSNRQVTFAKRRAGLVKKAR-EIGVLCDAEVGVVIFSSAGKLYDFWTPETT-----LPRILEKYQTNSGKILWDEKHKS---------------------------ISAEIDRVKKENDNMQIELRHMKGEDVNSLQ-PKELIAIEEALTNGQTNLRDKMMDHWKMH----RRN-----EKMLEEEHKLLALRMHQQD-DLSSGMREMELGYHQG--------------------------RDFTSQMPFTFRLQPSHPNLQEDK------------------------ 'Triticum aestivum PISTILLATA_lik2' -MGRGKIEIKRIENQSNRQVTFSKRKNGILKKAK-EISVLCDAEVGVVVFSSAGKLYDFCSPKTS-----LSRILEKYQTNSGKILWDEKHKS---------------------------LSAEIDRIKKENDNMQIELRHLKGEDLNSLQ-PKELIMIEEALDNGLTSLHEKQMEHYDRL----VKH-----GKMLEDENKLLAFKVHQHDIALSGSMRDLELGYHPD--------------------------RDFAAQMPITFRVQPSHPNLQEDS------------------------ 'Triticum aestivum TaAGL10_ABF579' -MGRGPVQLRRIENKINRQVTFSKRRSGLLKKAH-EISVLCDAEVALIVFSTKGKLYEYSSQDSS-----MDVILERYQRYSFEER--AVLDPSIGN--------------------QANWGDEYGSLKIKLDAFQKSQRQLLGEQLGPLT-TKELQQLEQQLDSSLKHIRSRKNQLLFESISELQKK-----EKSLKDQNGVLQKHLVETEKEKNNVLSNIHHQEQLNGATNINHQEQLNGATTSSPSPTPATAQDSMATPNIGPYQSSESGGGNPEPQPSPAQANNSNLPPWMLSTISSR- 'Triticum aestivum TaAGL11_ABF579' MARE-RREIKRIESAAARQVTFSKRRRGLFKKAE-ELSVLCDADVALIVFSSTGKLSQFAS-S-S-----TNEIIDKYSTHSKNLGKTD-QPALDLN----------------------LEHSKYANLNDQLAEASLRLRQMRGEELEGLS-VDELQQLEKNLETGLHRVLQTKDQQFLEQINELHRK-----SSQLAEENMKLRNQVGQIP----TAGKLVVA---------------------DTEN-VVAEDGQSSESVMTALHSGSSQ--DNDDGSDVSLKLGLPCLPWK--------- 'Triticum aestivum TaAGL14_ABF579' -MGRGRSEIKRIDNPTQRQSTFYKRRDGLFKKAR-ELAVLCDADLLLLLFSASGKLYQYLAPTVP----SVKEFVERYEAATHTKVWSDIR-----QER----------------------RAELEKVAKMCDLLEKELRFMTVDDGEQYT-VPSLAALEHNLEAAMHKVRSEKDRKIGGEMSYLENM---------IRGKQAERYGLCDKLAHAQSLKVVEGGSTS------------------------------LNNGLDLKLGFN---------------------------------- 'Triticum aestivum TaAGL25_ABF579' -MGRGKVQLKRIENKINRQVTFSKRRSGLLKKAH-EISVLCDAEVGLIIFSTRGKLYEFST-ESC-----MDKILERYERYSYAEK--VLVSSESEI--------------------QGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLN-LKELQQLEQQLESSLKHIRSRKNQLMHESISELQKK-----ERSLQEENKVLQKELVEKQKAH------VAQQDQ--------------TQPQTSSSSSSFMLRDAPPAANTSIHPAATG-ERAEDAAVQPQAPPRTGLPPWMVSHING-- 'Triticum aestivum TaAGL32_ABF579' -MARGKVQLRRIENPVHRQVIFCKRRAGLLKKAR-ELSVLCDADIGIIIFSAHGKLYDL--ATTG----TMDGLIERYKSASGEGVAADGC----GDQR-------------------VDPRQEAMVLKQEIDLLQKGLRYIYGNRANEHMNVDELNALERYLEIWMFNIRSAKMQIMIQEIQALKSKILYMQEGMLKAANEILQEKIVEQH-GLIDVGMTIADQQNGHFS-------------------TVPLLEEITNPLTILSGYSTCRGSEMGYSF----------------------- 'Triticum aestivum TaAGL42_ABF579' MARRGRVELRRIEDRTSRQVRSSKRRAGLFKKAF-ELSLLCDAEVALLVFSPAGKLYEYAS-S-S-----IEGTYDRYQQFAVPGRNLI-------------------------------QEDATVCNDEDPSNMQSRLGGIAAWSLDNN--------------------ADNSDASSLEKLEKLLKD-----ALRITESKKALAKQNSGGS-----------------------------------------TSGESPNGPTGQENGRNA?------------------------------- 'Triticum aestivum TaAGL8_ABF5794' -MGRGKVELKRIDNKISRQVTFAKRRNGLLKKAY-ELSVLCDAEVALIIFSTRGRLFEFST-SSC-----MYKTLERYRSCNFNS---EATATPETE--------------------QSN-YQEYLKLKTRVEFLQTTQRNLLGEDLGPLN-MKELEQLENQIEISLKHIRATKSQQSLDQLFELKRK-----EQQLQDVNKDLRKKIQETSVENVLQMS---CQDVG--------PSGSSGHANQANQQEYFH-HDCDPSLHIG-YQRNFLDQLNKE------------------------- ; END; BEGIN TREES; Title 'MADS-box family'; LINK Taxa = Taxa; TRANSLATE [0] 1 Aegilops_tauschii_subsp._tauschii, [1] 2 'Aegilops tauschii subsp. tauschii_B', [2] 3 'Arabidopsis thaliana AG12_like_N', [3] 4 'Arabidopsis thaliana AGL22_SVP_N', [4] 5 'Arabidopsis thaliana AP3_NP_1910', [5] 6 'Arabidopsis thaliana PI_NP_19752', [6] 7 'Arabidopsis thaliana SEP1_NP_568', [7] 8 'Brachypodium distachyon AGL14_li', [8] 9 'Hordeum vulgare APETALA3_like_AA', [9] 10 'Hordeum vulgare PISTILLATA_like', [10] 11 'Hordeum vulgare WM16_ACB45307.1', [11] 12 'Hordeum vulgare WM29B_ACB45306.1', [12] 13 Leymus_chinensis_LcMADS1, [13] 14 Leymus_chinensis_LcMADS10, [14] 15 Leymus_chinensis_LcMADS11, [15] 16 Leymus_chinensis_LcMADS2, [16] 17 Leymus_chinensis_LcMADS3, [17] 18 Leymus_chinensis_LcMADS4, [18] 19 Leymus_chinensis_LcMADS5, [19] 20 Leymus_chinensis_LcMADS6, [20] 21 Leymus_chinensis_LcMADS7, [21] 22 Leymus_chinensis_LcMADS8, [22] 23 Leymus_chinensis_LcMADS9, [23] 24 'Oryza sativa OsMADS14_P0C5B1.1', [24] 25 'Oryza sativa OsMADS16_Q944S9.2', [25] 26 'Oryza sativa OsMADS18_Q0D4T4.1', [26] 27 'Oryza sativa OsMADS22_Q9XJ66.1', [27] 28 'Oryza sativa OsMADS26_A2YQK9.2', [28] 29 'Oryza sativa OsMADS2_Q40702.1', [29] 30 'Oryza sativa OsMADS32_Q8S151.1', [30] 31 'Oryza sativa OsMADS4_Q40703.3', [31] 32 'Oryza sativa OsMADS55_AAQ23144.2', [32] 33 'Oryza sativa OsMADS58_BAE54300.1', [33] 34 'Oryza sativa OsMADS5_A2Y9P0.1', [34] 35 'Oryza sativa OsMADS65_Q9XJ61.1', [35] 36 'Triticum aestivum AP1_AAO72630.1', [36] 37 'Triticum aestivum APETALA3_like', [37] 38 'Triticum aestivum PISTILLATA_lik', [38] 39 'Triticum aestivum PISTILLATA_lik2', [39] 40 'Triticum aestivum TaAGL10_ABF579', [40] 41 'Triticum aestivum TaAGL11_ABF579', [41] 42 'Triticum aestivum TaAGL14_ABF579', [42] 43 'Triticum aestivum TaAGL25_ABF579', [43] 44 'Triticum aestivum TaAGL32_ABF579', [44] 45 'Triticum aestivum TaAGL42_ABF579', [45] 46 'Triticum aestivum TaAGL8_ABF5794'; TREE Imported_tree_0 = ((5:0.572489,(25:0.076275,(9:0.0,(18:0.004479,37:0.0):0.004475):0.019944):0.295712):0.250365,(((3:0.33811,(15:0.131764,(44:0.018515,(1:0.009274,28:0.071168):0.0):0.00000020246):0.329308):0.587109,((33:0.125545,(12:0.015947,20:0.037904):0.204428):0.500048,(30:0.093321,(11:0.010642,(14:0.0,42:0.005311):0.0):0.043696):0.914702):0.078033):0.315189,(((7:0.367584,(34:0.113784,(21:0.052759,46:0.028535):0.046603):0.316701):0.224533,((16:0.030222,(26:0.244286,40:0.026119):0.000000202463):0.350478,(24:0.102351,(13:0.019509,(36:0.0,43:0.012101):0.021397):0.073092):0.222709):0.22277):0.396805,((6:0.410646,((17:0.0,(10:0.004764,39:0.00479):0.004761):0.086819,(29:0.042487,(31:0.048767,(38:0.004771,(2:0.0,19:0.014274):0.0):0.10816):0.117998):0.01104):0.24922):0.387913,(((8:0.106738,35:0.25792):0.052785,(22:0.034149,45:0.045194):0.056545):0.826407,(4:0.232228,(32:0.107636,(27:0.06411,(23:0.030177,41:0.022246):0.042989):0.030453):0.304333):0.316041):0.420861):0.028542):0.0000260055):0.250365):0.0; END;