#NEXUS [written Fri Mar 02 21:32:02 EST 2018 by Mesquite version 3.2 (build 801) at Nattapols-MacBook-Air.local/192.168.0.5] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=36; TAXLABELS Ruhlandiella_CH28_sp1 RUhlandiella_CH42_sp1 Ruhlandiella_MES556_sp1 Ruhlandiella_MES571_sp1 Ruhlandiella_MES572_sp1 Ruhlandiella_MES580_sp1 Ruhlandiella_MES581_sp1 Ruhlandiella_MES900_sp1 Ruhlandiella_MES901_sp1 Ruhlandiella_MES954_sp1 Ruhlandiella_MES1187_sp1 Ruhlandiella_MES1273_sp1 Ruhlandiella_MES1277_sp1 Ruhlandiella_MES_1284_sp1 Ruhlandiella_MES1571_sp1 Ruhlandiella_MES2159_sp1 Ruhlandiella_MES2284_sp1 Ruhlandiella_MES2502_sp1 Ruhlandiella_MES2543_sp1 Ruhlandiella_MES2553_sp1 Ruhlandiella_MES2682_sp1 Ruhlandiella_MES2854_sp1 Ruhlandiella_AR17_sp1 Ruhlandiella_MES1255_sp2 Ruhlandiella_MES1341_sp2 R_berolinensis_SPN01 R_berolinensis_CUP1230 R_berolinensis_UCB928 R_peregrina R_reticulatus_SPN02 R_truncatus_H5715 Ruhlandiella_OSC60136 EcM_RootTip_JX316486 EcM_RootTip_JX316287 EcM_RootTip_JX316362 EcM_RootTip_KC759498 ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=600; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Ruhlandiella_CH28_sp1 -------------------------------------------------------------------------------CCTTGTGTGAGCCCTGTAGCATGTGTGTGAATAACACCTGCTACAGAGTTGCTAGTGGTAAGCCCATTATCAAAACTTGACATGTAAATAAGTCTGATTCTTCCTTGAAATAAAATAAAACTTTCAACAACGGATCTCTAGGCTCTTGCATCGATGAAGAACGCAGTGAAATGCGATAAGTAATGTGAATTGCAGAATCTCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTATGGTATTCCGTAGGGCATGCCTGTCTGAGCGTCAGCTCCCCCCCACCTCAAGCATCTGCAGAGAAGCTTGGATTACTTTGGAGAAGTGGTTTTTGTAGGCGCTGAAAGTTGCCCAAAATTTCCACCCCCCAGAAATACATTGGCAGTATGGCTTTCCAAACTGGACGTAATAAGCATATAAAAGCGTCTCTGTTTAGTCAGTGTTGTGCTTGCCTTAACCCACCCAATATTTTTTTCTGGGTGACCTCAGATCAGGTAGGGATACCCGCTGAACTTAAGCATA RUhlandiella_CH42_sp1 ----------------------------------------TTGTTTACCTACCCTGTTGCTTCCACTAGACAGGTTTCACCTTGTGTGAGCCCTGTAGCATGTGTGTGAATAACACCTGCTACAGAGTTGCTAGTGGTAAGCCCATTATCAAAACTTGACATGTAAATAAGTCTGATTCTTCCTTGCAATAAAATAAAACTTTCAACAACGGATCTCTAGGCTCTTGCATCGATGAAGAACGCAGTGAAATGCGATAAGTAATGTGAATTGCAGAATCTCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTATGGTATTCCGTAGGGCATGCCTGTCTGAGCGTCAGCTCCCCCCCACCTCAAGCATCTGCAGAGAAGCTTGGATTACTTTGGAGAAGTGGTTTTTGTAGGCGCAGAAAGTTGCCCAAAATTTCCACCCCCCAGAAATACATTGGCAGTATGGCTTTCCAAACTGGACGTAATAAGCATATAAAAGCGTCTCTGTTTAGTCAGTGTTGTGCTTGCCTTAACCCACCCAATATTTTTTTCTGGGTGACCTCAGATCAGGTAGGGATACCCGCTGAACTTAAGCATA Ruhlandiella_MES556_sp1 ---CATTATTG-AAAACTGCTTTCAGTTTTTTACATCCCATTGTTTACCTACCCTGTTGCTTCCACTAGACAGGTTTCACCTTGTGTGAGCCCTGTAGCATGTGTGTGAATAACACCTGCTACAGAGTTGCTAGTGGTAAGCCCATTATCAAAACTTGACATGTAAATAAGTCTGATTCTTCCTTGCAATAAAATAAAACTTTCAACAACGGATCTCTAGGCTCTTGCATCGATGAAGAACGCAGTGAAATGCGATAAGTAATGTGAATTGCAGAATCTCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTATGGTATTCCGTAGGGCATGCCTGTCTGAGCGTCAGCTCCCCCCCACCTCAAGCATCTGCAGAGAAGCTTGGATTACTTTGGAGAAGTGGTTTTTGTAGGCGCTGAAAGTTGCCCAAAATTTCCACCCCCCAGAAATACATTGGCAGTATGGCTTTCCAAACTGGACGTAATAAGCATATAAAAGCGTCTCTGTTTAGTCAGTGTTGTGCTTGCCTTAACCCACCCAATATTTTTTTCTGGGTGACCTCAGATCAGGTAGGGATACCCGCTGAACTTAAGCATA Ruhlandiella_MES571_sp1 ---CATTATTG-AAAACTGCTTTCAGTTTTTTACATCCCATTGTTTACCTACCCTGTTGCTTCCACTAGACAGGTTTCACCTTGTGTGAGCCCTGTAGCATGTGTGTGAATAACACCTGCTACAGAGTTGCTAGTGGTAAGCCCATTATCAAAACTTGACATGTAAATAAGTCTGATTCTTCCTTGAAATAAAATAAAACTTTCAACAACGGATCTCTAGGCTCTTGCATCGATGAAGAACGCAGTGAAATGCGATAAGTAATGTGAATTGCAGAATCTCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTATGGTATTCCGTAGGGCATGCCTGTCTGAGCGTCAGCTCCCCCCCGCCTCAAGCATCTGCAGAGAAGCTTGGATTACTTTGGAGAAGTGGTTTTTGTAGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ruhlandiella_MES572_sp1 ---CATTATTGAAAAACTGCTTTCAGTTTTTTACATCCCATTGTTTACCTACCCTGTTGCTTCCACTAGACAGGTTTCACCTTGTGTGAGCCCTGTAGCATGTGTGTGAATAACACCTGCTACAGAGTTGCTAGTGGTAAGCCCATTATCAAAACTTGACATGTAAATAAGTCTGATTCTTCCTTGAAATAAAATAAAACTTTCAACAACGGATCTCTAGGCTCTTGCATCGATGAAGAACGCAGTGAAATGCGATAAGTAATGTGAATTGCAGAATCTCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTATGGTATTCCGTAGGGCATGCCTGTCTGAGCGTCAGCTCCCCCCCGCCTCAAGCATCTGCAGAGAAGCTTGGATTACTTTGGAGAAGTGGTTTTTGTAGGCGCTGAAAGTTGCCCAAAATTTCCACCCCCCAGAAATACATTGGCAGTATGGCTTTCCAAACTGGACGTAATAAGCATATAAAAGCGTCTCTGTTTAGTCAGTGTTGTGCTTGCCTTAACCCACCCAATATTTTTTTCTGGGTGACCTCAGATCAGGTAGGGATACCCGCTGAACTTAAGCATA Ruhlandiella_MES580_sp1 ---CATTATTGAAAAACTGCTTTCAGTTTTTTACATCCCATTGTTTACCTACCCTGTTGCTTCCACTAGACAGGTTTCACCTTGTGTGAGCCCTGTAGCATGTGTGTGAATAACACCTGCTACAGAGTTGCTAGTGGTAAGCCCATTATCAAAACTTGACATGTAAATAAGTCTGATTCTTCCTTGAAATAAAATAAAACTTTCAACAACGGATCTCTAGGCTCTTGCATCGATGAAGAACGCAGTGAAATGCGATAAGTAATGTGAATTGCAGAATCTCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTATGGTATTCCGTAGGGCATGCCTGTCTGAGCGTCAGCTCCCCCCCACCTCAAGCATCTGCAGAGAAGCTTGGATTACTTTGGAGAAGTGGTTTTTGTAGGCGCTGAAAGTTGCCCAAAATTTCCACCCCCCAGAAATACATTGGCAGTATGGCTTTCCAAACTGGACGTAATAAGCATATAAAAGCGTCTCTGTTTAGTCAGTGTTGTGCTTGCCTTAACCCACCCAATATTTTTTTCTGGGTGACCTCAGATCAGGTAGGGATACCCGCTGAACTTAA?CATA Ruhlandiella_MES581_sp1 ---CATTATTGAAAAACTGCTTTCAGTTTTTTACATCCCATTGTTTACCTACCCTGTTGCTTCCACTAGACAGGTTTCACCTTGTGTGAGCCCTGTAGCATGTGTGTGAATAACACCTGCTACAGAGTTGCTAGTGGTAAGCCCATTATCAAAACTTGACATGTAAATAAGTCTGATTCTTCCTTGAAATAAAATAAAACTTTCAACAACGGATCTCTAGGCTCTTGCATCGATGAAGAACGCAGTGAAATGCGATAAGTAATGTGAATTGCAGAATCTCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTATGGTATTCCGTAGGGCATGCCTGTCTGAGCGTCAGCTCCCCCCCACCTCAAGCATCTGCAGAGAAGCTTGGATTACTTTGGAGAAGTGGTTTTTGTAGGCGCTGAAAGTTGCCCAAAATTTCCACCCCCCAGAAATACATTGGCAGTATGGCTTTCCAAACTGGACGTAATAAGCATATAAAAGCGTCTCTGTTTAGTCAGTGTTGTGCTTGCCTTAACCCACCCAATATTTTTTTCTGGGTGACCTCAGATCAGGTAGGGATACCCGCTGAACTTAAGCATA Ruhlandiella_MES900_sp1 ----------GGATAACAGCTTTGA??GA-GG?CATCCCATTGTTTACCTACCCTGTTGCTTCCACTGGACAGGTTTCACTTTGTGTGAGCCCTGTAGCATGTGTGTGAATAACACCTGCTGCAGAGTTGCTAGTGGTAAGCCCATTATCGAAACTTGACATGAAAATAAGTCTGATTCTTCCTTGAAATAAAATAAAACTTTCAACAACGGATCTCTAGGCTCTTGCATCGATGAAGAACGCAGTGAAATGCGATAAGTAATGTGAATTGCAGAATCTCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTATGGTATTCCGTAGGGCATGCCTGTCTGAGCGTCAGCTCCCCCCCACCTCAAGCATCTGTAGAGAAGCTTGGATTACTTTGGAGAAGTGGCTTTTGTAGGCACTGAAAGTTGCCCAAGATTTCCACCCCCCAGAAATACATTGGCAGTATGGCTTTCCAAACTGGACGTAATAAGCATATAAAAGCGTCTCTGTTTAGTCAGTGTTGTGCTTGCCTTAACCCACCCAATATTTT-TTCTGGGTGACCTCAGATCAGGTAGGGATACCCGCTGAACTTAAGCATA Ruhlandiella_MES901_sp1 ----AGTATTGAAAACT-GCTTTCAGT?G-G?GCATCCCCTTGTTTACCTACCCTGTTGCTTCCACTGGACAGGTTTCACTTTGTGTGAGCCCTGTAGCATGTGTGTGAATAACACCTGCTGCAGAGTTGCTAGTGGTAAGCCCATTATCGAAACTTGACATGAAAATAAGTCTGATTCTTCCTTGAAATAAAATAAAACTTTCAACAACGGATCTCTAGGCTCTTGCATCGATGAAGAACGCAGTGAAATGCGATAAGTAATGTGAATTGCAGAATCTCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTATGGTATTCCGTAGGGCATGCCTGTCTGAGCGTCAGCTCCCCCCCACCTCAAGCATCTGTAGAGAAGCTTGGATTACTTTGGAGAAGTGGCTTTTGTAGGCACTGAAAGTTGCCCAAGATTTCCACCCCCCAGAAATACATTG?CAGTATGGCTTTCCAAACTGGACGTAATAAGCATATAAAAACGTCTCTGTTTAGTCA?TGTTGTGCTTGCCTTAACCCACCCAATATTTT-TTCTGG?TGACCTCACATCA?GTAG?GAGAC?CGCTGA?C?TAAGTATA Ruhlandiella_MES954_sp1 ----------------------------------------------------------------------------------------------------------------------------------------------------------CTTGACATGAAAATAAGTCTGATTCTTCCTTGAAATAAAATAAAACTTTCAACAACGGATCTCTAGGCTCTTGCATCGATGAAGAACGCAGTGAAATGCGATAAGTAATGTGAATTGCAGAATCTCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTATGGTATTCCGTAGGGCATGCCTGTCTGAGCGTCAGCTCCCCCCCACCTCAAGCATCTGTAGAGAAGCTTGGATTACTTTGGAGAAGTGGCTTTTGTAGGCACTGAAAGTTGCCCAAGATTTCCACCCCCCAGAAATACATTGGCAGTATGGCTTTCCAAACTGGACGTAATAAGCATATAAAAGCGTCTCTGTTTAGTCAGTGTTGTGCTTGCCTTAACCCACCCAATATTTT-TTCTGGGTGACCTCAGATCA?GTAGGGATACCCGCTGAACTTAAGCATA Ruhlandiella_MES1187_sp1 GATCATTATTGAAAAACTGCTTTCAGTTTTTTACATCCCATTGTTTACCTACCCAGTTGCTTCCACTAGACAGGTTTCACCTTGTGTGAGCCCTGTAGCATGTGTGTGAATAACACCTGCTACAGAGTTGCTAGTGGTAAGCCCATTATCAAAACTTGACATGTAAATAAGTCTGATTCTTCCTTGCAATAAAATAAAACTTTCAACAACGGATCTCTAGGCTCTTGCATCGATGAAGAACGCAGTGAAATGCGATAAGTAATGTGAATTGCAGAATCTCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTATGGTATTCCGTAGGGCATGCCTGTCTGAGCGTCAGCTCCCCCCCACCTCAAGCATCTGCAGAGAAGCTTGGATTACTTTGGAGAAGTGGTTTTTGTAGGCGCTGAAAGTTGCCCAAAATTTCCACCCCCCAAAAATACATTGGCAGTATGGCTTTCCAAACTGGACGTAATAAGCATATAAAAGCGTCTCTGTTTAGTCAGTGTTGTGCTTGCCTTAACCCACCCAATATTTTTTTCTGGGTGACCTCAGATCAGGTAGGGATACCCGCTGAACTTAAGC--- Ruhlandiella_MES1273_sp1 GATCATTATTGAAAAACTGCTTTCAGTTTTTTACATCCCATTGTTTACCTACCCTGTTGCTTCCACTGGACAGGTTTCACCTTATGTGAGCCCTGTAGCATGTGTGTGAATAACACCTGCTGCAGAGTTGCTAGTGGTAAGCCCATTATCAAAACTTGACATGAAAATAAGTCTGATTCTTCCTTGAAATAAAATAAAACTTTCAACAACGGATCTCTAGGCTCTTGCATCGATGAAGAACGCAGTGAAATGCGATAAGTAATGTGAATTGCAGAATCTCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTATGGTATTCCGTAGGGCATGCCTGTCTGAGCGTTAGCTCCCCCCCACCTCAAGCATCTGTAGAGAAGCTTGGATTACTTTGGAGAAGTGGTTTTTGTAGGCGCTGAAAGTTGCCCAAAATTTCCACCCCCCAGAAATACATTGGCAGTATGGCTTTCCAAACTGGACGTAATAAGCATATAAAAGCGTCTCTGTTTAGTCAGTGTTGTGCTTGCCTTAACCCACCCAATATTTTTTTCTGGGTAACCTCAGATCAGGTAGGGATACCCGCTGAACTTAAGC--- Ruhlandiella_MES1277_sp1 GATCATTATTGAAAAACTGCTTTCAGTTTTTTACATCCCATTGTTTACCTACCCTGTTGCTTCCACTGGACAGGTTTCACCTTATGTGAGCCCTGTAGCATGTGTGTGAATAACACCTGCTGCAGAGTTGCTAGTGGTAAGCCCATTATCAAAACTTGACATGAAAATAAGTCTGATTCTTCCTTGAAATAAAATAAAACTTTCAACAACGGATCTCTAGGCTCTTGCATCGATGAAGAACGCAGTGAAATGCGATAAGTAATGTGAATTGCAGAATCTCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTATGGTATTCCGTAGGGCATGCCTGTCTGAGCGTTAGCTCCCCCCCACCTCAAGCATCTGTAGAGAAGCTTGGATTACTTTGGAGAAGTGGTTTTTGTAGGCGCTGAAAGTTGCCCAAAATTTCCACCCCCCAGAAATACATTGGCAGTATGGCTTTCCAAACTGGACGTAATAAGCATATAAAAGCGTCTCTGTTTAGTCAGTGTTGTGCTTGCCTTAACCCACCCAATATTTTTTTCTGGGTAACCTCAGATCAGGTAGGGATACCCGCTGAACTTAAGC--- Ruhlandiella_MES_1284_sp1 GATCATTATTGAAAAACTGCTTTCAGTTTTTTACATCCCATTGTTTACCTACCCTGTTGCTTCCACTAGACAGGTTTCACCTTGTGTGAGCCCTGTAGCATGTGTGTGAATACCACCTGCTACAGAGTTGCTAGTGGTAAGCCCATTATCAAAACTTGACATGTAAATAAGTCTGATTCTTCCTTGAAATAAAATAAAACTTTCAACAACGGATCTCTAGGCTCTTGCATCGATGAAGAACGCAGTGAAATGCGATAAGTAATGTGAATTGCAGAATCTCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTATGGTATTCCGTAGGGCATGCCTGTCTGAGCGTCAGCTCCCCCCCACCTCAAGCATCTGCAGAGAAGCTTGGATTACTTTGGAGAAGTGGTTTTTGTAGGCGCTGAAAGTTGCCCAAAATTTCCACCCCCCAGAAATACATTGGCAGTATGGCTTTCCAAACTGGACGTAATAAGCATATAAAAGCGTCTCTGTTTAGTCAGTGTTGTGCTTGCCTTAACCCACCCAATATTTTTTTCTGGGTGACCTCAGATCAGGTAGGGATACCCGCTGAACTTAAGC--- Ruhlandiella_MES1571_sp1 -----TTATTGAAAAACTGCTTTCAGTTTTTTACATCCCATTGTTTACCTACCCTGTTGCTTCCACTAGACAGGTTTCACCTTGTGTGAGCCCTGTAGCATGTGTGTGAATAACACCTGCTACAGAGTTGCTAGTGGTAAGCCCATTATCAAAACTTGACATGTAAATAAGTCTGATTCTTCCTTGAAATAAAATAAAACTTTCAACAACGGATCTCTAGGCTCTTGCATCGATGAAGAACGCAGTGAAATGCGATAAGTAATGTGAATTGCAGAATCTCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTATGGTATTCCGTAGGGCATGCCTGTCTGAGCGTCAGCTCCCCCCCACCTCAAGCATCTGCAGAGAAGCTTGGATTACTTTGGAGAAGTGGTTTTTGTAGGCGCTGAAAGTTGCCCAAAATTTCCACCCCCCAGAAATACATTGGCAGTATGGCTTTCCAAACTGGACGTAATAAGCATATAAAAGCGTCTCTGTTTAGTCAGTGTTGTGCTTGCCTTAACCCACCCAATATTTTTTTCTGGGTGACCTCAGATCAGGTAGGGATACCCGCTGAACTTAAGCAT- Ruhlandiella_MES2159_sp1 GATCATTATTGAAAAACTGCTTTCAGTTTTTTACATCCCATTGTTTACCTACCCTGTTGCTTCCACTAGACAGGTTTCACCTTGTGTGAGCCCTGTAGCATGTGTGTGAATAACACCTGCTACAGAGTTGCTAGTGGTAAGCCCATTATCAAAACTTGACATGTAAATAAGTCTGATTCTTCCTTGAAATAAAATAAAACTTTCAACAACGGATCTCTAGGCTCTTGCATCGATGAAGAACGCAGTGAAATGCGATAAGTAATGTGAATTGCAGAATCTCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTATGGTATTCCGTAGGGCATGCCTGTCTGAGCGTCAGCTCCCCCCCACCTCAAGCATCTGCAGAGAAGCTTGGATTACTTTGGAGAAGTGGTTTTTGTAGGCGCTGAAAGTTGCCCAAAATTTCCACCCCCCAGAAATACATTGGCAGTATGGCTTTCCAAACTGGACGTAATAAGCATATAAAAGCGTCTCTGTTTAGTCAGTGTTGTGCTTGCCTTAACCCACCCAATATTTTTTTCTGGGTGACCTCAGATCAGGTAGGGATACCCGCTGAACTTAAGCATA Ruhlandiella_MES2284_sp1 GATCATTATTGAAAAACTGCTTTCAGTTTTTTACATCCCATTGTTTACCTACCCTGTTGCTTCCACTAGACAGGTTTCACCTTGTGTGAGCCCTGTAGCATGTGTGTGAATAACACCTGCTACAGAGTTGCTAGTGGTAAGCCCATTATCAAAACTTGACATGTAAATAAGTCTGATTCTTCCTTGAAATAAAATAAAACTTTCAACAACGGATCTCTAGGCTCTTGCATCGATGAAGAACGCAGTGAAATGCGATAAGTAATGTGAATTGCAGAATCTCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTATGGTATTCCGTAGGGCATGCCTGTCTGAGCGTCAGCTCCCCCCCACCTCAAGCATCTGCAGAGAAGCTTGGATTACTTTGGAGAAGTGGTTTTTGTAGGCGCTGAAAGTTGCCCAAAATTTCCACCCCCCAGAAATACATTGGCAGTATGGCTTTCCAAACTGGACGTAATAAGCATATAAAAGCGTCTCTGTTTAGTCAGTGTTGTGCTTGCCTTAACCCACCCAATATTTTTTTCTGGGTGACCTCAGATCA----------------------------- Ruhlandiella_MES2502_sp1 GATCATTATTGAAAAACTGCTTTCAGTTTTTTACATCCCATTGTTTACCTACCCTGTTGCTTCCACTAGACAGGTTTCACCTTGTGTGAGCCCTGTAGCATGTGTGTGAATAACACCTGCTACAGAGTTGCTAGTGGTAAGCCCATTATCAAAACTTGACATGTAAATAAGTCTGATTCTTCCTTGCAATAAAATAAAACTTTCAACAACGGATCTCTAGGCTCTTGCATCGATGAAGAACGCAGTGAAATGCGATAAGTAATGTGAATTGCAGAATCTCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTATGGTATTCCGTAGGGCATGCCTGTCTGAGCGTCAGCTCCCCCCCACCTCAAGCATCTGCAGAGAAGCTTGGATTACTTTGGAGAAGTGGTTTTTGTAGGCGCTGAAAGTTGCCCAAAATTTCCACCCCCCAGAAATACATTGGCAGTATGGCTTTCCAAACTGGACGTAATAAGCATATAAAAGCGTCTCTGTTTAGTCAGTGTTGTGCTTGCCTTAACCCACCCAATATTTTTTTCTGGGTGACCTCAGATCAGGTAGGGATACCCGCT------------- Ruhlandiella_MES2543_sp1 -------------------------------TACATCCCATTGTTTACCTACCCTGTTGCTTCCACTAGACAGGTTTCACCTTGTGTGAGCCCTGTAGCATGTGTGTGAATAACACCTGCTACAGAGTTGCTAGTGGTAAGCCCATTATCAAAACTTGACATGTAAATAAGTCTGATTCTTCCTTGCAATAAAATAAAACTTTCAACAACGGATCTCTAGGCTCTTGCATCGATGAAGAACGCAGTGAAATGCGATAAGTAATGTGAATTGCAGAATCTCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTATGGTATTCCGTAGGGCATGCCTGTCTGAGCGTCAGCTCCCCCCCACCTCAAGCATCTGCAGAGAAGCTTGGATTACTTTGGAGAAGTGGTTTTTGTAGGCGCAGAAAGTTGCCCAAAATTTCCACCCCCCAGAAATACATTGGCAGTATGGCTTTCCAAACTGGACGTAATAAGCATATAAAAGCGTCTCTGTTTAGTCAGTGTTGTGCTTGCCTTAACCCACCCAATATTTTTTTCTGGGTGACCTCAGATCA----------------------------- Ruhlandiella_MES2553_sp1 -------ATTGAAAAACTGCTTTCAGTTTTTTACATCCCATTGTTTACCTACCCTGTTGCTTCCACTAGACAGGTTTCACCTTGTGTGAGCCCTGTAGCATGTGTGTGAATAACACCTGCTACAGAGTTGCTAGTGGTAAGCCCATTATCAAAACTTGACATGTAAATAAGTCTGATTCTTCCTTGAAATAAAATAAAACTTTCAACAACGGATCTCTAGGCTCTTGCATCGATGAAGAACGCAGTGAAATGCGATAAGTAATGTGAATTGCAGAATCTCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTATGGTATTCCGTAGGGCATGCCTGTCTGAGCGTCAGCTCCCCCCCACCTCAAGCATCTGCAGAGAAGCTTGGATTACTTTGGAGAAGTGGTTTTTGTAGGCGCTGAAAGTTGCCCAAAATTTCCACCCCCCAGAAATACATTGGCAGTATGGCTTTCCAAACTGGACGTAATAAGCATATAAAAGCGTCTCTGTTTAGTCAGTGTTGTGCTTGCCTTAACCCACCCAATATTTTTTTCTGGGTGACCTCAGATCAGGTAGGGATACCCGC-------------- Ruhlandiella_MES2682_sp1 GATCATTATTGAAAAACTGCTTTCAGTTTTTTACATCCCATTGTTTACCTACCCTGTTGCTTCCACTAGACAGGTTTCACCTTGTGTGAGCCCTGTAGCATGTGTGTGAATAACACCTGCTACAGAGTTGCTAGTGGTAAGCCCATTATCAAAACTTGACATGTAAATAAGTCTGATTCTTCCTTGAAATAAAATAAAACTTTCAACAACGGATCTCTAGGCTCTTGCATCGATGAAGAACGCAGTGAAATGCGATAAGTAATGTGAATTGCAGAATCTCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTATGGTATTCCGTAGGGCATGCCTGTCTGAGCGTCAGCTCCCCCCCACCTCAAGCATCTGCAGAGAAGCTTGGATTACTTTGGAGAAGTGGTTTTTGTAGGCGCTGAAAGTTGCCCAAAATTTCCACCCCCCAGAAATACATTGGCAGTATGGCTTTCCAAACTGGACGTAATAAGCATATAAAAGCGTCTCTGTTTAGTCAGTGTTGTGCTTGCCTTAACCCACCCAATATTTTTTTCTGGGTGACCTCAGATCAGGTAGGGA--------------------- Ruhlandiella_MES2854_sp1 GATCATTATTGAAAAACTGCTTTCAGTTTTTTACATCCCATTGTTTACCTACCCTGTTGCTTCCACTAGACAGGTTTCACCTTGTGTGAGCCCTGTAGCATGTGTGTGAATAACACCTGCTACAGAGTTGCTAGTGGTAAGCCCATTATCAAAACTTGACATGTAAATAAGTCTGATTCTTCCTTGAAATAAAATAAAACTTTCAACAACGGATCTCTAGGCTCTTGCATCGATGAAGAACGCAGTGAAATGCGATAAGTAATGTGAATTGCAGAATCTCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTATGGTATTCCGTAGGGCATGCCTGTCTGAGCGTCAGCTCCCCCCCACCTCAAGCATCTGCAGAGAAGCTTGGATTACTTTGGAGAAGTGGTTTTTGTAGGCGCTGAAAGTTGCCCAAAATTTCCACCCCCCAGAAATACATTGGCAGTATGGCTTTCCAAACTGGACGTAATAAGCATATAAAAGCGTCTCTGTTTAGTCAGTGTTGTGCTTGCCTTAACCCACCCAATATTTTTTTCTGGGTGACCTCAGATCAGGTAGGGATACCCGCTGAACTTAAGCATA Ruhlandiella_AR17_sp1 GATCATTATTGAAAAACTGCTTTCAGTTTTTTACATCCCATTGTTTACCTACCCTGTTGCTTCCACTAGACAGGTTTCACCTTGTGTGAGCCCTGTAGCATGTGTGTGAATAACACCTGCTACAGAGTTGCTAGTGGTAAGCCCATTATCAAAACTTGACATGTAAATAAGTCTGATTCTTCCTTGAAATAAAATAAAACTTTCAACAACGGATCTCTAGGCTCTTGCATCGATGAAGAACGCAGTG-AATGCGATAAGTAATGTGAATTGCAGAATCTCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTATGGTATTCCGTAGGGCATGCCTGTCTGAGCGTCAGCTCCCCCCCACCTCAAGCATCTGCAGAGAAGCTTGGATTACTTTGGAGAAGTGGTTTTTGTAGGCGCTGAAAGTTGCCCAAAATTTCCACCCCCCAGAAATACATTGGCAGTATGGCTTTCCAAACTGGACGTAATAAGCATATAAAAGCGTCTCTGTTTAGTCAGTGTTGTGCTTGCCTTAACCCACCCAATATTTTTTTCTGGGTGACCTCAGATCAGGTAGGGATACCCGCTGAACTTAAGCATA Ruhlandiella_MES1255_sp2 GATCATTATTGAAAAACTGCTCTTAGTTTTTTACATCCCATTGTTTACTTACCCTGTTGCTTCCACTAGACAGGTTTCACCTTGTGTGAGCCCTTTGGCTTGTGACT---TAACACCTGCCACAGAGTTGCTAGTGGTAAGCTTATCACCAAAACTTGATATAAAAATACGTCTGATTTTTCCTTCAAATAAAATAAAACTTTCAACAACGGATCTCTAGGCTCTTGCATCGATGAAGAACGCAGTGAAATGCGATAAGTAATGTGAATTGCAGAATCTCGTGAATCATCGAATTTTTGAACGCACATTGCGCCCTATGGTATTCCATAGGGCATGCCTGTCTGAGTGTCAGCTCCCCCCAA--TCAAGCATCTTTAGAGAAGTTTGGATTACTTTGGAGAAGTGGTTTTTGTAGGCACTAAAAGTTGCTGAAAATCTCCACCCTCTAGAAATACATTGGCAGTATGGCTTTCCAAACTGGACGTAATAAGCATATAAAAGCGTCTCTGTTTAGTGAGTCTTGTGCTAGCCCTAACTCACCCA--ATTATCTTATGGGTGACCTCAGATCAGGTAGGGATACCCGCTGAACTTAAGC--- Ruhlandiella_MES1341_sp2 GATCATTATTGAAAAACTGCTCTTAGTTTTTTACATCCCATTGTTTACTTACCCTGTTGCTTCCACTAGACAGGTTTCACCTTGTGTGAGCCCTTTGGCTTGTGACT---TAACACCTGCCACAGAGTTGCTAGTGGTAAGCTTATCACCAAAACTTGATATAAAAATACGTCTGATTTTTCCTTCAAATAAAATAAAACTTTCAACAACGGATCTCTAGGCTCTTGCATCGATGAAGAACGCAGTGAAATGCGATAAGTAATGTGAATTGCAGAATCTCGTGAATCATCGAATTTTTGAACGCACATTGCGCCCTATGGTATTCCATAGGGCATGCCTGTCTGAGTGTCAGCTCCCCCCAA--TCAAGCATCTTTAGAGAAGTTTGGATTACTTTGGAGAAGTGGTTTTTGTAGGCACTAAAAGTTGCTGAAAATCTCCACCCTCTAGAAATACATTGGCAGTATGGCTTTCCAAACTGGACGTAATAAGCATATAAAAGCGTCTCTGTTTAGTGAGTCTTGTGCTAGCCCTAACTCACCCA--ATTATCTTATGGGTGACCTCAGATCAGGTAGGGATACCCGCTGAACTTAAGC--- R_berolinensis_SPN01 ---------------------------------------TTTGTTTACCTACCCTGTTGCTTCCACCAGAGAAGTTCTTCCA------------------------------------------------CTGGTGGTAAGTCTATAAAGAAAACTT--TGTGAATAAATGTCTGATAAAACTATGAAATAAAATAAAACTTTCAACAACGGATCTCTAGGCTCTTGCATCGATGAAGAACGCAGTGAAATGCGATAAGTAATGTGAATTGCAGAATCTCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTATGGTATTCCGTAGGGCATGCCTGTCTGAGCGTCAGCTCCCCCACA-CTCAAGTCTCTTAATTGAAACTTGGATCATTTTAAAGAAGTAGCT----GAAATACAATAGG-------------CTACTCTTTGGAAATTCATAGGCAGTATGGC-ACCTGAACCAGGCGTAATAAAAATATAAAAGCGTCTCTCTTTAGGAAA-GTTGTACTTGCCTCAACCCACCCA---TTTTCTTCTGGGTGACCTCAGATCAGGTAGGGATACCCGCTGAACTTAAGCATA R_berolinensis_CUP1230 ---------------------------------TATCCCTTTGTTTACCTACCCTGTTGCTTCCACCAGAGAAGTTCTTCCA------------------------------------------------CTGGTGGTAAGTCTATAAAGAAAACTT--TGTGAATAAATGTCTGATAAAACTATGAAATAAAATAAAACTTTCAACAACGGATCTCTAGGCTCTTGCATCGATGAAGAACGCAGTGAAATGCGATAAGTAATGTGAATTGCAGAATCTCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTATGGTATTCCGTAGGGCATGCCTGTCTGAGCGTCAGCTCCCCCACA-CTCAAGTCTCTTAATTGAAACTTGGATCATTTTAAAGAAGTAGCT----GAAATACAATAGG-------------CTACTCTTTGGAAATTCATAGGCAGTATGGC-ACCTGAACCAGGCGTAATAAAAATATAAAAGCGTCTCTCTTTAGGAAA-GTTGTACTTGCCTCAACCCACCCA---TTTTCTTCTGGGTGACCTCAGATCAGGTAGGGATACCCGCTGAGCTTAAGCATA R_berolinensis_UCB928 --------------------------------------------------------------------------------------------------------------------------------------TGGTAAGTCTATAA--AGACCTT----TGTGAAAAAGTCTGAC--?TTTATGAAATAAAATAAAACTTTCAACAACGGATCTCTAGGCTCTTGCATCGATGAA?AAC-CACTGAAATGCGATAAGTAATGTGAATTGCATAATCTCGTGAATCATCCAATCTTTGAACGCACATTGCGCCCTATGGTATTCCGTAGGGCATGCCTGTCTGAGCGTCAGCTCCCCCACA-CTCAAGTCTCTTAATTGAAACTTGGATCATTTTAAAGAAGTAGCT----GAAATACAATAGG-------------CTACTCTTTGGAAATTCATAGGCAGTATGGC-ACCTGAACCAGGCGTAATAAGAATATAAAAGCGTCTCTCTTTAGGAAA-GTTGTACTTGCCTCAACCCACCCA---TTTTCTTCTGGGTGACCTCAGATCAGGTAGGGATACCCGCTGA--TTAAACATA R_peregrina ------------ACATTT--GGAGTTTTTTTTATATCCCTTTGTTTACCTACCCTGTTG?TTCCACCAGAAAAGTTCTTTCC------------------------------------------------CTGGTGGTAGGTCTATAAACAAAATTT--TGTGAACAAATGT?TGATAAAACTCTGAAATAAAATAAAACTTTCAACAACGGATCTCTAGGCTCTTGCATCGATGAAGAACGCAGTGAAATGCGATAAGTAATGTGAATTGCAGAATCTCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTATGGTATTCCATAGGGCATGCCTGTCTGAGCGTCAGCTCCCCCACA-CTCAAGTCTCTTAATTGAAGCTTGGATTATTTTAAAGAAGTGGCT----GAAACACAATAGG-------------CTACTCTTTAGAAATTCATAGGCAGTATGGC-ACCTGAACTAGGCGTAATAAGAATATAAAAGCGTCTCTCTTTAGGAAG-GTTGTACTTGCCTTAACCCACCCA---TTTTCTTCTGGGTGACCTCAGATCAGGTAGGGATACCCGCTGAACTTAAGCATA R_reticulatus_SPN02 --------------------------------------CTATGTTTACCTACTCTGTTGCTTCCACCAGATGTACTCGGCCGTAGGT-------------------------------------TGGTCACTGGTGGTAAGTCT-CTATCAAAATTT---CTAGAAACATGTCTGATACTTTTTTTAAATGAAATAAAACTTTCAACAACGGATCTCTAGGCTCTTGCATCGATGAAGAACGCAGTGAAATGCGATAAGTAATGTGAATTGCAGAATCTCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTATGGTATTCCGTAGGGCATGCCTGTCTGAGCGTCAGCTCCCCCAC-CCTCAAGCCTCTTTATTGAAGTTTGGATTTCTTTAAAGAAGTGGCT-----------GACAAG-------------CTACTCTTTAGAAATTTATAGGCAGTATGGC-ACCTGAACCAGGCGTAATAAGGATATAAAAGCGTCTCTCTTTAGGAAG-GTTGTACTTGCCTCAACCCACCCA---TTTTCTTCTGGGTGACCTCAGATCA?GTAGGGATACCCGCTGA?---------- R_truncatus_H5715 GATCATTACTGAAAAACC--ATGAGTTTTTTTATATCCCTTTGTTTACCTACCCTGTTGCTTCCACCAGAGAAGTTCTTTCT------------------------------------------------CTGGTGGTAAGTCTATAAAGAAAACTT-CTGTGAATAAATGTCTGATAAAACTTTAAAATAAAATAAAACTTTCAACAACGGATCTCTAGGCTCTTGCATCGATGAAGAACGCAGTGAAATGCGATAAGTAATGTGAATTGCAGAATCTCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTATGGTATTCCGTAGGGCATGCCTGTCTGAGCGTCAGCTCCCCCACA-CTCAAGTCTCTTAATTGAAGCTTGGATTATTTTAAAGAAGTAGCT----GAAATACAATAGG-------------CTACTCTTTAGAAATTCATAGGCAGTATGGC-ACCTGAACCAGGCGTAATAAGGATATAAAAGCGTCTCTCTTTAGGAAG-GTTGTACTTGTCTCAACCCACCCA---TTTTCTTTTGGGTGACCTCAGATCAGGTAGGGATACCCGCTGAACTTAAGCATA Ruhlandiella_OSC60136 -----------------------------------TCCCTTTGTTTACCTACCATGTTGCTTCCACCAGACAGGTTCCGCCA------------------------------------------------CTGGTGGCAAGTCT-TCAATAAAATTTACAACC--AAAATGTCTGATACAGCTTTAAAATAAAATAAAACTTTCAACAACGGATCTCTAGGCTCTTGCATCGATGAAGAACGCAGTGAAATGCGATAAGTAATGTGAATTGCAGAATCTCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTATGGTATTCCGTAGGGCATGCCTGTCTGAGCGTCAGCTCCCCCACA-CTCAAGCTTCTTTATTGAAGCTTGGATTACTTTAAAGAAGTGGCT----GAAACACAATAGG-------------CTACTCTTTAGAAATTCATAGGCAGTATGGC-ACCTGAACCAGGCGTAATAAGGATATAAAAGCGTCTCTCTTTAGGAAA-GTTGTACTTGCCTCAACCCACCCA---TTATTATCTGGGTGACCTCAGATCAGGTAGGGATACCCGCTGAACTTAAGCATA EcM_RootTip_JX316486 -----------------------------------------------------------------CTGGACAGGTTTCACCTTATGTGAGCCCTGTAGCATGTGTGTGAATAACACCTGCTGCAGAGTTGCTAGTGGTAAGCCCATTATCAAAACTTGACATGAAAATAAGTCTGATTCTTCCTTGAAATAAAATAAAACTTTCAACAACGGATCTCTAGGCTCTTGCATCGATGAAGAACGCAGTGAAATGCGATAAGTAATGTGAATTGCAGAATCTCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTATGGTATTCCGTAGGGCATGCCTGTCTGAGCGTTAGCTCCCCCCCACCTCAAGCATCTGTAGAGAAGCTTGGATTACTTTGGAGAAGTGGTTTTTGTAGGCGCTGAAAGTTGCCCAAAATTTCCACCCCCCAGAAATACATTGGCAGTATGGCTTTCCAAACTGGACGTAATAAGCATATAAAAGCGTCTCTGTTTAGTCAGTGTTGTGCTTGCCTTAACCCACCCAATATTTTTTTCTGGGTAACCTCAGATCAGGTAGGGATACCCGCTGAACTTAAGCATA EcM_RootTip_JX316287 GATCATTATTGAAAAACTGCTTCTAGTTTTTTACATCCCATTGTTTACCTACCCTGTTGCTTCCACTGGACAGGTTTCACCTTGTGTGAGCCCTGTAGCATGTGTGTGAATAACACCTGCTGCAGAGTTGCTAGTGGTAAGCCCATTATCAAAACTTGACATGAAAATAAGTCTGATTCTTCCTTGAAATAAAATAAAACTTTCAACAACGGATCTCTAGGCTCTTGCATCGATGAAGAACGCAGTGAAATGCGATAAGTAATGTGAATTGCAGAATCTCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTATGGTATTCCGTAGGGCATGCCTGTCTGAGCGTCAGCTCCCCCCCACCTCAAGCATCTGTAGAGAAGCTTGGATTACTTTGGAGAAGTGGTTTTTGTAGGCGCTGAAAGTTGCCCAAAATGTCCACCCCCCAGAAATACATTGGCAGTATGGCTTTCCAAACTGGACGTAATAAGCATATAAAAGCGTCTCTGTTTAGTCAGTGTTGTGCTTGCCTTAACCCACCCAATATTTT-TTCTGGGTGACCTCAGATCAGG--------------------------- EcM_RootTip_JX316362 GATCATTATTGAAAAACTGCTTCTAGTTTTTTACATCCCATTGTTTACCTACCCTGTTGCTTCCACTGGACAGGTTTCACCTTATGTGAGCCCTGTAGCATGTGTGTGAATAACACCTGCTGCAGAGTTGCTAGTGGTAAGCCCATTATCAAAACTTGACATGAAAATAAGTCTGATTCTTCCTTGAAATAAAATAAAACTTTCAACAACGGATCTCTAGGCTCTTGCATCGATGAAGAACGCAGTGAAATGCGATAAGTAATGTGAATTGCAGAATCTCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTATGGTATTCCGTAGGGCATGCCTGTCTGAGCGTTAGCTCCCCCCCACCTCAAGCATCTGTAGAGAAGCTTGGATTACTTTGGAGAAGTGGTTTTTGTAGGCGCTGAAAGTTGCCCAAAATTTCCACCCCCCAGAAATACATTGGCAGTATGGCTTTCCAAACTGGACGTAATAAGCATATAAAAGCGTCTCTGTTTAGTCAGTGTTGTGCTTGCCTTAACCCACCCAATATTTTTTTCTGGGTAACCTCAGATCAGGTAGGGATACCCGCTGAACTTAAGCATA EcM_RootTip_KC759498 GATCATTATTGAAAAACTGCTTCTAGTTTTTTACATCCCATTGTTTACCTACCCTGTTGCTTCCACTGGACAGGTTTCACCTTGTGTGAGCCCTGTAGCATGTGTGTGAATAACACCTGCTGCAGAGTTGCTAGTGGTAAGCCCATTATCAAAACTTGACATGAAAATAAGTCTGATTCTTCCTTGAAATAAAATAAAACTTTCAACAACGGATCTCTAGGCTCTTGCATCGATGAAGAACGCAGTGAAATGCGATAAGTAATGTGAATTGCAGAATCTCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTATGGTATTCCGTAGGGCATGCCTGTCTGAGCGTCAGCTCCCCCCCACCTCAAGCATCTGTAGAGAAGCTTGGATTACTTTGGAGAAGTGGTTTTTGTAGGCGCTGAAAGTTGCCCAAAATGTCCACCCCCCAGAAATACATTGGCAGTATGGCTTTCCAAACTGGACGTAATAAGCATATAAAAGCGTCTCTGTTTAGTCAGTGTTGTGCTTGCCTTAACCCACCCAATAT----------------------------------------------------- ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 600; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 600; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 600; END; BEGIN TREES; Title 'ITS_tree'; ID 0161e921376b3; LINK Taxa = Taxa; TRANSLATE [0] 1 Ruhlandiella_CH28_sp1, [1] 2 RUhlandiella_CH42_sp1, [2] 3 Ruhlandiella_MES556_sp1, [3] 4 Ruhlandiella_MES571_sp1, [4] 5 Ruhlandiella_MES572_sp1, [5] 6 Ruhlandiella_MES580_sp1, [6] 7 Ruhlandiella_MES581_sp1, [7] 8 Ruhlandiella_MES900_sp1, [8] 9 Ruhlandiella_MES901_sp1, [9] 10 Ruhlandiella_MES954_sp1, [10] 11 Ruhlandiella_MES1187_sp1, [11] 12 Ruhlandiella_MES1273_sp1, [12] 13 Ruhlandiella_MES1277_sp1, [13] 14 Ruhlandiella_MES_1284_sp1, [14] 15 Ruhlandiella_MES1571_sp1, [15] 16 Ruhlandiella_MES2159_sp1, [16] 17 Ruhlandiella_MES2284_sp1, [17] 18 Ruhlandiella_MES2502_sp1, [18] 19 Ruhlandiella_MES2543_sp1, [19] 20 Ruhlandiella_MES2553_sp1, [20] 21 Ruhlandiella_MES2682_sp1, [21] 22 Ruhlandiella_MES2854_sp1, [22] 23 Ruhlandiella_AR17_sp1, [23] 24 Ruhlandiella_MES1255_sp2, [24] 25 Ruhlandiella_MES1341_sp2, [25] 26 R_berolinensis_SPN01, [26] 27 R_berolinensis_CUP1230, [27] 28 R_berolinensis_UCB928, [28] 29 R_peregrina, [29] 30 R_reticulatus_SPN02, [30] 31 R_truncatus_H5715, [31] 32 Ruhlandiella_OSC60136, [32] 33 EcM_RootTip_JX316486, [33] 34 EcM_RootTip_JX316287, [34] 35 EcM_RootTip_JX316362, [35] 36 EcM_RootTip_KC759498; TREE Imported_tree_1 = ((30:0.06810262486454392,(32:0.03430968434751787,(29:0.03548939428362568,(31:0.011757863900575509,(28:0.04013992134120287,(26:0.00000100000050002909,27:0.002273552978482074):0.0021907481876775694[%bootstrapFrequency = 95 ]):0.016252905357988453[%bootstrapFrequency = 98 ]):0.012346199492781944[%bootstrapFrequency = 70 ]):0.03329618967413592[%bootstrapFrequency = 100 ]):0.008578499675145644[%bootstrapFrequency = 97 ]):0.07797096655123686[%bootstrapFrequency = 100 ],(((1:0.00000100000050002909,((7:0.00000100000050002909,(15:0.00000100000050002909,(4:0.00000100000050002909,5:0.00000100000050002909):0.0016978925446095648[%bootstrapFrequency = 63 ]):0.00000100000050002909[%bootstrapFrequency = 3 ]):0.00000100000050002909[%bootstrapFrequency = 2 ],(23:0.00000100000050002909,(22:0.00000100000050002909,(16:0.00000100000050002909,((6:0.00000100000050002909,(20:0.00000100000050002909,(17:0.00000100000050002909,21:0.00000100000050002909):0.00000100000050002909[%bootstrapFrequency = 73 ]):0.00000100000050002909[%bootstrapFrequency = 57 ]):0.00000100000050002909[%bootstrapFrequency = 10 ],(14:0.0017035581210793095,(11:0.0034055477618824006,(18:0.00000100000050002909,(3:0.00000100000050002909,(2:0.00000100000050002909,19:0.00000100000050002909):0.0018592262617468278[%bootstrapFrequency = 94 ]):0.00000100000050002909[%bootstrapFrequency = 49 ]):0.00000100000050002909[%bootstrapFrequency = 23 ]):0.0016976134331156798[%bootstrapFrequency = 64 ]):0.00000100000050002909[%bootstrapFrequency = 6 ]):0.00000100000050002909[%bootstrapFrequency = 0.0 ]):0.00000100000050002909[%bootstrapFrequency = 0.0 ]):0.00000100000050002909[%bootstrapFrequency = 0.0 ]):0.00000100000050002909[%bootstrapFrequency = 1 ]):0.00000100000050002909[%bootstrapFrequency = 32 ]):0.003552844100931726[%bootstrapFrequency = 88 ],((9:0.016035618663935356,(8:0.005102104285194996,10:0.00000100000050002909):0.002190561006393943[%bootstrapFrequency = 94 ]):0.018166421692965375[%bootstrapFrequency = 97 ],((34:0.00000100000050002909,36:0.00000100000050002909):0.005303973102702447[%bootstrapFrequency = 90 ],((12:0.00000100000050002909,13:0.00000100000050002909):0.00000100000050002909[%bootstrapFrequency = 95 ],(33:0.00000100000050002909,35:0.00000100000050002909):0.0033957765277838376[%bootstrapFrequency = 42 ]):0.005114324596370784[%bootstrapFrequency = 73 ]):0.00000100000050002909[%bootstrapFrequency = 52 ]):0.003282370131061217[%bootstrapFrequency = 64 ]):0.019743278890320473[%bootstrapFrequency = 88 ],(24:0.00000100000050002909,25:0.00000100000050002909):0.05790865486313286):0.07797096655123686[%bootstrapFrequency = 100 ]); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1520044322709; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 174088435607039219; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 3859065042938263922; mqVersion 320; checksumv 0 3 4036157467 null getNumChars 600 numChars 600 getNumTaxa 36 numTaxa 36 short true bits 15 states 15 sumSquaresStatesOnly 465121.0 sumSquares 465121.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1440 739; setLocation 0 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #174088435607039219 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 0161e921376b3; toggleUseWeights off; endTell; setAssignedID 1660.1520034745530.3127402061983898943; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1340 667; setLocation 0 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.interchange; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #3859065042938263922 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1340 667; setLocation 0 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 16 6 1 1; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;