#NEXUS [written Tue Mar 06 13:53:33 CST 2018 by Mesquite version 3.31 (build 859) at Jacksons-MacBook-Pro.local/167.96.79.123] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=16; TAXLABELS Baracktrema_obamai_KY243883 Hapalotrema_mehrai_AY604708 Learedius_learedi_AY604707 Spirhapalum_polesianum_AY604705 Spirhapalum_siamensis_FJ481166 Spirorchis_artericola_AY604704 Spirorchis_cf_scripta_KY091666 Spirorchis_collinsi_KY091664 Spirorchis_haematobius_FJ481164 Spirorchis_testiplexus_MH002459 Spirorchis_picta_KY091665 Spirorchis_scripta_AY222174 Unicaecum_sp_AY604711 Vasotrema_robustum_AY604706 Vasotrema_cf_robustum_MH002457 Spirorchis_haematobius_MH002458 ; END; BEGIN CHARACTERS; TITLE Spirorchis_alignment; DIMENSIONS NCHAR=1272; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Baracktrema_obamai_KY243883 CTTAGTAACGGCGAGTGAACAGGGATTAGCCCAGCACCGAAGCCTGTGGTCGCTTGACTGCTAGGCAATGTGGTGTTTAGGTTGGTTCTTGGCATTACTGCTTTATCCCAAGTCCAGCAATGAGTACGGCTTGTTGGAGTGGCCCAAAGAGGGTGAAAGGCCCGTGGGGGTTTAG--C--------TAGTTTTGCCCTGAGCTGACCTTGGAGTCGGGTTGTTTGAGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCCAAGGCTAAATACTGACACGAGTCCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGTACTTTGAAGAGAGAGTAAACAGTGCGTGAAACCGCTCAGAGGTAAACGGGTGGAGTTGAACTGCAATCCGTGAGGATTCAGCTGATGAGATTGGCTTGAGCTTGGGCATATTTACCGGCCTTC-GGGGTCCGCGCATTGCG-GGTTCCTGCCCTTTTTGGGTGGGGATGCACGA-GTACTAATCAGGTGCCGTGTGCCTCGGGGGTTTTGGGTTT-TCTCGTCAGTGCACTTTCTCATGGTGTTCACCACGACCGGCGCTG-TGTCTGTCTACCATGGTCGAACCGGTTAGGCTTGGTGC-AT---CACTAGGCCTGGTCGGGATGGCAGGTAGCTCACTGGTTCTTGTTGGCTTCGGCTGGCTTGAGCCTCCGAGTGTAATTAGCTGGCTTTGGTAGATCTGTGCCATGCGTCGGAGCTGGCGGCTATGGTGTGTGCGTGCGTGCTATGGCTTTCTGACGGGGCTGGGTCTGGTTGGCAAG-TTACCTGCTCATGCAGGTC-GTCAATGTCTCAGTCTCGTTCGGCTGGCGGTGGCGTGCGTGACACTAGCTTTGGCCAATAGTCTGTGGTGTAGTGGTAAACTATCCACCCGACCCGTCTTGAAACACGGACCAAGGAGTTTAACATGTACGCGAGTCATTGGGCTTTACGAAACCCAAAGGCGCAGTGAAGGTAAAGGTTCGGCTTGTCCGGACTGAGGTGGGATCCTGTTGTTTCTTCTGCCTGGAACTGCCAA-GCATCCGAGCTTCAGGCGCACCACCGGCCCGTCCCATGGCGTAGTCATGTAATTTC---TTATGTGCACCGTCGGGGCGGAGCTAGAGCGTACACGTTGAGACCCGAAAGATGGTGAACTATGCTTGTGCAGGCTGAAGCCAGAGGAAACTCTGGTGGAGGGCCGCAGCGATTCTGACGTGCAAATCGATCGTCTAACATGAGTATAGGGGC Hapalotrema_mehrai_AY604708 CTTAGTAACTGCGAGTGAACAGGGATGAGCCCAGCACCGAAGCCTGTGGTTATTTGACTACTAGGCAATGTGGTGTTTAGGTTGGTTCATGGCATTACTGCTCTACCCGAAGTCCAGCAATGAGTACGGCTTACTGTTCTGGCCCACAGAGGGTGAAAGGCCCGTGGGGGTGGAGATCAAGTTTGTCAGTTTTGCTTTGAGCCTACCTTGGAGTCGGGTTGTTTGTGAATGCAGCCCAAAGTGGGTGGTAAACTCCATCTAAGGCTAAATACTAACACGAGTCCGATAGCAAACAAGTACCGTGAGGGAAAGTTGAAAAGTACTTTGAAGAGAGAGTAAACAGTGCGTGAAACTGCTCAAAGGTAAACGGGTGGAGTTGAACTGCAAGCTCTGGGGATTCAGCTGATGAGTATGACTAGCGTTCGGGCTTGTTGGCCGGCCCTCTGATGTCTGTCTAATGGC-AGGTGCCTTCCC-TTGGGGTTGGTATGTGTGATGCGCTTACCAGGCACCGCACGCATTGAGGGTGAATGGTCT-ACTTGTCAGTGCACTTTCTCAGGGTGTTCACCACGACCGGCACAGCCGTCTGTCTGCTTTGGTCAAACTGATCAGGTCTGGT--TTT---TGCTAGGCTTGGTTGGGATGGAAGGTAGCCCTTGTTCAATT----------------TTGGA-CGTTGGGTATAATGAGCTGGCCATTGTGGATCTGTATGGTGTGTCGGAGTTGGCGGCTT-------TGCATGCGTGCTCTGTCCTGCGGGCGGGATTGAGTCTGGTTGGCTTG-TTACTGACCTCGGTTAGTCGGTCGATGGCTTAGTCTTGTTCAGTGGGCGGTTGCGTGTGTGAC-TTGGTTTGGGCCAATAGTCTGTGGTGTAGTGGTAGACGATCCACCTGACCCGTCTTGAAACACGGACCAAGGAGTTTAACATATGCGCGAGTCATTGGGCGTTACGAAACCCAAAGGCGAAGTGAAGGTAAAGGTTTGGCTTGTCCGAACTGAGGTGAGATCCCGTTGGT---TTTGCCTAATAAATAACCGAACTGCGAACAGCGGGCGCATCACCAGCCCGTCCCATGGCGTAGACATGTGACCTCGTGTTATGTGCACCGTCGGGGCGGAGCAAGAGCGCATACGTTGAGACCCGAAAGATGGTGAACTATGCTTGCTAAGGTTGAAGCCAGAGGAAACTCTGGTGGAGGACCGCAGCGATTCTGACGTGCAAATCGATCGTCTAAAGTGAGTATGGGGGC Learedius_learedi_AY604707 CTTAGTAACTGCGAGTGAACAGGGATTAGCCCAGCACCGAAGCCTGTGGTTGTTTGACTACTAGGCAATGTGGTGTTTAGGTTGGTTCATGGCATTACTGCTCTACCCTAAGTCCAGCAATGAGTACGGCTTAATGTTCTGGCCCACAGAGGGTGAAAGGCCCGTGGGGGTGGAGATCAAGTTTGTCAGTTTTGCTTTGAGCCGACCTTGGAGTCGGGTTGTTTGTGAATGCAGCCCAAAGTGGGTGGTAAACTCCATCCAAGGCTAAATACTAACACGAGTCCGATAGCAAACAAGTACCGTGAGGGAAAGTTGAAAAGTACTTTGAAGAGAGAGTAAACAGTGCGTGAAACTGCTCAAAGGTAAACGGGTGGAGTTGAACTGCAAGCTCCGGGGATTCAGCTGATGAGTGTGATT-GCGTTCGGGCAGCTTGGCCGGCCTTCTGATGTCTGTCTAGTGGC-AGGTGCCTTCCC-TTGGGGTTGGTATGTGTGATGCGCTTACCATGCGCCGCACGCATTGGGGGTGATGGGTCTGACTTGTCAGTGCACTTTCTCGGGGTGTTCACCACGACCGGCACAGCCGTCTGTCTGCTTTGGTCAAACTGATCAGGTCTGGT--TAT---TGCTAGGCTTGGTTGGGATGGAAGGTAGCCCGTGTTCACTTG---------------TTGGA-CTTTGGGTATAATAAGCTGGCCATTGTGGATCTGTATGGTGTGTCGGAGATGGCGGCTT-------TGCATGCGTGCTCTGTCCTGCGGGCGGGATTGAGTCCGGTCGGCTTG-TTACTGACTTCGGTTAGTCGGTCGATGGCTTAGTCTTGTTCAGTGGGCGGTTGCGTGTGTGAC-TTGGCTTGGGCCAATAGTCTGTGGTGTAGTGGTAGACGATCCACCTGACCCGTCTTGAAACACGGACCAAGGAGTTTAACATATGCGCGAGTCATTGGGCGTTACGAAACCCAAAGGCGAAGTGAAGGTAAAGGTTTGGCTTGTCCGAACTGAGGTGAGATCCCGTTGG----TTTGCCTAATAACTTACC-AGCTGTGAACAGCGGGCGCATCACCGGCCCGTCCCATGGCGTAGACATGTGACCTTGTGTTATGTGCACCGTCGGGGCGGAGCAAGAGCGCATACGTTGAGACCCGAAAGATGGTGAACTATGCTTGCTAAGGTTGAAGCCAGAGGAAACTCTGGTGGAGGACCGCAGCGATTCTGACGTGCAAATCGATCGTCTAAAGTGAGTATGGGGGC Spirhapalum_polesianum_AY604705 CCTAGTAACTGCGAGTGAAGATGGATGAGCCCAGCACCGAAGCCTGTGGTCATTTGACTGCTAGGCAATGTGGTGTTTAGGTTGGTTCTTGGCATTACTGCTCTACTCCAAGTCCAGCAATGAGTACGGCTTACTGGATCGGCCCATAGAGGGTGAAAGGCCCGTGGGAGTAGAGATCA----TGACGGTTTTGCCCTGGATTGACCATGGAGTCGGGTTGTTTGTGAATGCAGCCCAAAGTGGGTGGTAAACTCCATCTAAGGCTAAATACTGGCACGAGTCCGATAGTAAACAAGTACCGTGAGGGAAAGTTGAAAAGTACTTTGAAGAGAGAGTAAACAGTGCGTGAAACCGCTCAGAGGTAAACGGGTGGAGTTGAACTGCAAGCCTTGAGGATTCAGCTGATGAGTATGATATGGGTTTGAACATGTTGACTGGCTCTCAGA-GTTCGCTTGGCGGC-GAGTCCCTGTTCTTTCGAGTGGGGATGCGTGATGTACTTATCAAGTACTGAGCGCTTTGAGGTGTCCGGGTCTG-CTTGTCAGTGCACTTTCTCTTGGTGTTCACCACGACCGGCACTGCTGTCTGTCTGTTACGGTTAAACCGGTTAGGCTTAGT--TATTT-GACTAGGCTTGATCGGGATGGCAGGTAGCTCATTGATTCTTGTCGGCCTCGGTTGGCTTGAGTTTTTGAGTGTAATCAGCTGACTGTAGTGGATCTGTGCAGTGTGTCGGAGCTGGCGGCTTTGGTATGTGCATGCGTGCTATGGCCTTTTGGCGGAGCTAAGTCTGGTTGGCAAG-TTACCTGTTTGGGCAGGTCGGTCAATGTCTTGGTTTCGTTCATTGGGTGGTGGCGTGTGTGATACTATCTTGGGCCAATAGTCTGTGGTGTAGTGGTAAACGATCCACCTGACCCGTCTTGAAACACGGACCAAGGAGTTTAACATGTACGCGAGTCATTGGGCGTTACGAAACCCAGAGGCGTAATGAAGGTAAAGGCTCGACTTGTTTGAGCTGAGGTGAGATCCTGCTGTTTCTTCTGCCTTGCACTATCAA-GCTTTCGAGCAGTAGGCGCATCACCAGCCCGTCTCATGATGTAGCCACGTAGCCTTGTGTTATGTGCACCGTCGGGGCGGAGCTAGAGCGTACACGTTGAGACCCGAAAGATGGTGAACTATGCTTGCGGAGGTTGAAGCCAGAGGAAACTCTGGTGGAGGACCGCAGCGATTCTGACGTGCAAATCGATCGTCTAACGTGAGTATAGGGGC Spirhapalum_siamensis_FJ481166 CCTAGTAACTGCGAGTGAAGAGGGATTAGCCCAGCACCGAAGCCTGTAGTTAATTGACTGCTAGGCAATGTGGTGTTTAGGTTGGTTCTTGGCATTACTGCTCAACTCCAAGTCCAGCAATGAGTACGGCTTACTGGAATGGCCCACAGAGGGTGAAAGGCCCGTGGGAGTTGAGGCC-------ACAGTTTTGTCCTGGATCGACCTTGGAGTCGGGTTGTTTGTGAATGCAGCCCAAAGTGGGTGGTAAACTCCATCTAAGGCTAAACACTGGCACGAGTCCGATAGTAAACAAGTACCGTGAGGGAAAGTTGAAAAGTACTTTGAAGAGAGAGTAAACAGTGCGTGAAACCGCTCAGAGGTAAACGGGTGGAGTTGAACTGCAATCCTTGAGGATTCAGCTGATGAGTATAACATGAGCTTGAACATATTGACTGGCTCTCAGA-GACAGGCTTAAGCC-GGGT-TCTGCTCTAATGAGGAGGATCGCATTATACACTTATCAAGTGTTGAGCTCTCTGGGCTGTCCGGGTCTG-CTCGTCAGTGCACTTTCTCTTGGTGTTCACCACGACCGGCACCGCTGTCTGTCTGCTACGGTTAAACCGGTTAGGCTTAGT-TTATT--GACTAGGCTTGATTGGGATGGCAGGTAGCTCATTGATTCTTGTCGACTTTAGTTGACTTGAGTTTTTGAGTGTAATCAGCTGACTGTAGTGGATCTGTGCAGTGTGTCGGAGCTGGCGGCTTTGGTATGTGCATGCGTGCTATGGCCTTTTGGCAGGGTTGGGTCTGGTCGGCAAG-TTACCTGTTTTGGCAGGTCGGTCGATGTCTCAGCTTTGTTCATTGGGTGGTGGCGCGTGTGATACTATCTTGGGCCAATAGTCTGTGGTGTAGTGGTAAACGATCCACCTGACCCGTCTTGAAACACGGACCAAGGAGTTTTACATGTACGCGAGTCATTGGGCGTTACGAAACCCAGAGGCGTAATGAAGGTAAAGGTTCGGCTTGTCCGAGCTGAGGTGAGATCCTGCTGTTTCCTTTGCCTTGCACTGTCAA-GCTTTAGAGCAGTAGGCGCATCACCAGCCCGTCTCATGATGTAGTCACGTATCCTTGTGTTATGTGCACCGTCGGGGCGGAGCTAGAGCGTACACGTTGATACCCGAAAGATGGTGAACTATGCTTGCGCAGGTTGAAGCCAGAGGAAACTCTGGTGGAGGACCGCAGCGATTCTGACGTGCAAATCGATCGTCTAACGTGAGTATAGGGGC Spirorchis_artericola_AY604704 CCTAGTAACTGCGAGTGAAGAGGGATGAGCCCAGCACCGAAGCCTGTGGTCATTTGACTGCTAGGCAATGTGGTGTTTAGGTTGGTTCTTGGCATTACTGCTCTACTCCAAGTCCAGCAATGAGTACGGCTTACTGGAACGGCCCATAGAGGGTGAAAGGCCCGTGGGGGTAGAGG-C-----TTACAGTTTTGTCCTGAATTGACCATGGAGTCGGGTTGTTTGTGAATGCAGCCCAAAGTGGGTGGTAAACTCCATCTAAGGCTAAATACTGGCACGAGTCCGATAGTAAACAAGTACCGTGAGGGAAAGTTGAAAAGTACTTTGAAGAGAGAGTAAACAGTGCGTGAAACCGCTCAGAGGTAAACGGGTGGAGTTGAACTGCAATCCTTGAGGATTCAGCTGATGAGTATGACATGGGCTTGGACATATTGACTGGCGCTCAGA-GATCAGCGATTTGCTGGGTTTCTGCTCTTCGGAGTGGGAATGCATTGTGTACTTGTCAAGTATACGGCTCTTTGGGTTGACCGGGTCTG-CTCGTCAGTGCACTTTCTCTTGGTGTTCACCACGACCGGCACTGCTGTCTGTCTACTATGGTTAAACCGGTTAGGCTTAGTCTTAT---GACTAGGCTTGATCGGGATGGCAGGTAGCTCTTTGGTTCTTGTCAGCTTCGGTTGGCTTGAGTCTTTGAGTGTAATTAGCTGACTGTAGTGGATCTGTGCAGTGTGTCGGAGCTGGCGGCTTTGGTATGTGCATGCGTGCTATGGCCTTTTGGCGGAGCTGAGTCTGGTCGGCAAG-TTACCTGTTTTGGCAGGTCGGTCGATGTCTTGGTTTCGTTCATTGGGTGGTGGCGTGTGTGATACTATCTTGGGCCAATAGTCTGTGGTGTAGTGGTAAACGATCCACCTGACCCGTCTTGAAACACGGACCAAGGAGTTTAACATGTACGCGAGTCATTGGGCGTTACGAAACCCAAAGGCGTAATGAAGGTAAAGGTTCGGCTTGTCCGAGCTGAGGTGAGATCCTGCTGTTTCCTTTGCCTTGCACTGTCAA-GCTTTCGAGCAGTAGGCGCATCACCAGCCCGTCTCATGATGTAGCCATGTAGCCTTGTGTTACGTGCACCGTCGGGGCGGAGCTAGAGCGTACACGTTGAGACCCGAAAGATGGTGAACTATGCTTGCGGAGGTTGAAGCCAGAGGAAACTCTGGTGGAGGACCGCAGCGATTCTGACGTGCAAATCGATCGTCTAACGTGAGTATAGGGGC Spirorchis_cf_scripta_KY091666 CCTAGTAACTGCGAGTGAAGAGGGATTAGCCCAGCACCGAAGCCTGTGGTCATTTGACTGCTAGGCAATGTGGTGTTTAGGTTGGTTCTTGGCATTACTGCTCTACTCCAAGTCCAGCAATGAGTACGGCTTACTGGAACGGCCCATAGAGGGTGAAAGGCCCGTGGGGGTAGAGG-C-----TTACAGTTTTGTCCTGAATTGACCATGGAGTCGGGTTGTTTGTGAATGCAGCCCAAAGTGGGTGGTAAACTCCATCTAAGGCTAAATACTGGCACGAGTCCGATAGTAAACAAGTACCGTGAGGGAAAGTTGAAAAGTACTTTGAAGAGAGAGTAAACAGTGCGTGAAACCGCTCAGAGGTAAACGGGTGGAGTTGAACTGCAATCCTTGAGGATTCAGCTGATGAGTATGACATGGGCTTGGACATATTGACTGGCGCTCAGA-GATCAGCGATTTGCTGGGTTTCTGCTCTTCGGAGTGGGAATGCATTGTGTACTTGTCAAGTATACGGCTCTTTGGGTTGACCGGGTCTG-CTCGTCAGTGCACTTTCTCTTGGTGTTCACCACGACCGGCACTGCTGTCTGTCTACTATGGTTAAACCGGTTAGGCTTAGTCTTAT---GGCTAGGCTTGATCGGGATGGCAGGTAGCTCTTTGATTCTTGTCAGCTTCGGTTGGCTTGAGTCTTTGAGTGTAATTAGCTGACTGTAGTGGATCTGTGCAGTGTGTCGGAGCTGGCGGCTTTGGTATGTGCATGCGTGCTATGGCCTTTTGGCGGAGCTGAGTCTGGTCGGCAAG-TTACCTGTTTTGGCAGGTCGGTCGATGTCTTGGTTTCGTTCATTGGGTGGTGGCGTGTGTGATACTATCTTGGGCCAATAGTCTGTGGTGTAGTGGTAAACGATCCACCTGACCCGTCTTGAAACACGGACCAAGGAGTTTAACATGTACGCGAGTCATTGGGCGTTACGAAACCCAAAGGCGTAATGAAGGTAAAGGTTCGGCTTGTCCGAGCTGAGGTGAGATCCTGCTGTTTCCTTTGCCTTGCACTGTCAA-GCTTTCGAGCAGTAGGCGCATCACCAGCCCGTCTCATGATGTAGCCACGTAGCCTTGTGTTATGTGCACCGTCGGGGCGGAGCTAGAGCGTACACGTTGAGACCCGAAAGATGGTGAACTATGCTTGCGGAGGTTGAAGCCAGAGGAAACTCTGGTGGAGGACCGCAGCGATTCTGACGTGCAAATCGATCGTCTAACGTGAGTATAGGGGC Spirorchis_collinsi_KY091664 ---AGTAACTGCGAGTGAAGAGGGATTAGCCCAGCACCGAAGCCTGTGGTCATTTGACTGCTAGGCAATGTGGTGTTTAGGTTGGTTCTTGGCATTACTGCTCTACTCCAAGTCCAGCAATGAGTACGGCTTACTGGAACGGCCCATAGAGGGTGAAAGGCCCGTGGGGGTAGAGG-C-----TTACAGTTTTGTCCTGAATTGACCATGGAGTCGGGTTGTTTGTGAATGCAGCCCAAAGTGGGTGGTAAACTCCATCTAAGGCTAAATACTGGCACGAGTCCGATAGTAAACAAGTACCGTGAGGGAAAGTTGAAAAGTACTTTGAAGAGAGAGTAAACAGTGCGTGAAACCGCTCAGAGGTAAACGGGTGGAGTTGAACTGCAATCCTTGAGGATTCAGCTGATGAGTATGATATGGGCTTGGACATATTGACTGGCGCCCAGA-GATCAGCGATTTGCTGGGTTTCTGCTCTTCGGGGTGGGAATGCATTGTGTACTTGTCAAGTATACGGCTCTTTGGGTTGTCCGGGTCTG-CTCGTCAGTGCACTTTCTCTTGGTGTTCACCACGACCGGCACTGCTGTCTGTCTACTGTGGTTAAACCGGTTAGGCTTAGTCTCAT---GACTAGGCTTGATCGGGATGGCAGGTAGCTCTTTAATTCTTGTCAGCTTCGGTTGGCTTGAGTTTTCGAGTGTAATCAGCTGACTGTAGTGGATCTGTGCAGTGTGTCGGAGCTGGCGGCTTTGGTATGTGCATGCGTGCTATAGCCCTTTGGCGGAGCTGAGTCTGGTCGGCAGG-TTACTTGTTTTGGCAAGTCGGTCGATGTCTTGGTTTCGTTCATTGGGTGGTGGCGTGTGTGATACTGTCTTGGGCCAATAGTCTGTGGTGTAGTGGTAAACGATCCACCTGACCCGTCTTGAAACACGGACCAAGGAGTTTAACATGTACGCGAGTCATTGGGCGTTACGAAACCCAAAGGCGTAATGAAGGTAAAGGTTCGGCTTGTCCGGACTGAGGTGAGATCCTGCTGTTTCCTTTGCCTTGCACTGTCAA-GCTTTCGAGCAGTAGGCGCATCACCAGCCCGTCTCATGATGTAGCCATGTAGCCTTGTGTTATGTGCACCGTCGGGGCGGAGCTAGAGCGTACACGTTGAGACCCGAAAGATGGTGAACTATGCTTGCGGAGGTTGAAGCCAGAGGAAACTCTGGTGGAGGACCGCAGCGATTCTGACGTGCAAATCGATCGTCTAACGTGAGTATAGGGGC Spirorchis_haematobius_FJ481164 -----------------------------CCCAGCACCGAAGCCTGTGGTCATTTGACTGCTAGGCAATGTGGTGTTTAGGTTGGTTCTTGGCATTACTGCTCTACTCCAAGTCCAGCAATGAGTACGGCTTACTGGAACGGCCCATAGAGGGTGAAAGGCCCGTGGGGGTAGAGG-C-----TTACAGTTTTGTCCTGAATTGACCATGGAGTCGGGTTGTTTGTGAATGCAGCCCAAAGTGGGTGGTAAACTCCATCTAAGGCTAAATACTGGCACGAGTCCGATAGTAAACAAGTACCGTGAGGGAAAGTTGAAAAGTACTTTGAAGAGAGAGTAAACAGTGCGTGAAACCGCTCAGAGGTAAACGGGTGGAGTTGAACTGCAATCCTTGAGGATTCAGCTGATGAGTATGACATGGGCTTGGACATATTGACTGGCGCTCAGA-GATCAGCGATTTGCTGGGTTTCTGCTCTTCGGGGTGGGAATGCATTGTGTACTTGTCAAGTACACGGCTCTTTGGGTTGACCGGGTCTG-CTCGTCAGTGCACTTTCTCTTGGTGTTCACCACGACCGGCACTGCTGTCTGTCTACTGTGGTTAAACCGGTTAGGCTTAGTCTAAT---GGCTAGGCTTGATCGGGATGGCAGGTAGCTCTTTGATTCTTGTCAGCTTCGGTTGGCTTGAGTTTCTGAGTGTAATCAGCTGACTGTAGTGGATCTGTGCAGTGTGTCGGAGCTGGCGGCTTTGGTATGTGCATGCGTGCTATGGCCTTTTGGCGGAGCTGAGTCTGGTCGGCAAG-TTACCTGTTTTGGCAGGTCGGTCGATGTCTTGGTTTCGTTCATTGGGTGGTGGCGTGTGTGATACTATCTTGGGCCAATAGTCTGTGGTGTAGTGGTAAACGATCCACCTGACCCGTCTTGAAACACGGACCAAGGAGTTTAACATGTACGCGAGTCATTGGGCGTTACGAAACCCAAAGGCGTAATGAAGGTAAAGGTTCGGCTTGTCCGAGCTGAGGTGAGATCCTGCTGTTTCCTTTGCCTTGCACTGTCAA-GCTTTCGAGCAGTAGGCGCATCACCAGCCCGTCTCATGATGTAGCCACGTAGCCTTGTGTTATGTGCACCGTCGGGGCGGAGCTAGAGCGTACACGTTGAGACCCGAAAGATGGTGAACTATGCTTGTGGAGGTTGAAGCCAGAGGAAACTCTGGTGGAGGACCGCAGCGATTCTGACGTGCAAATCGATCGTCTAACATGAGTATAGGGGC Spirorchis_testiplexus_MH002459 -CTAGTAACTGCGAGTGAAGAGGGATTAGCCCAGCACCGAAGCCTGTGGTCATTTGACTGCTAGGCAATGTGGTGTTTAGGTTGGTTCTTGGCATTACTGCTCTACTCCAAGTCCAGCAATGAGTACGGCTTACTGGAACGGCCCATAGAGGGTGAAAGGCCCGTGGGGGTAGAGG-C-----TTACAGTTTTGTCCTGAATTGACCATGGAGTCGGGTTGTTTGTGAATGCAGCCCAAAGTGGGTGGTAAACTCCATCTAAGGCTAAATACTGGCACGAGTCCGATAGTAAACAAGTACCGTGAGGGAAAGTTGAAAAGTACTTTGAAGAGAGAGTAAACAGTGCGTGAAACCGCTCAGAGGTAAACGGGTGGAGTTGAACTGCAATCCTTGAGGATTCAGCTGATGAGTATGACATGGGCTTGGACATATTGACTGGCGCTCAGA-GATCAGCGATTTGCTGGGTTTCTGCTCTTCGGAGTGGGAATGCATTGTGTACTTGTCAAGTATACGGCTCTTTGGGTTGACCGGGTCTG-CTCGTCAGTGCACTTTCTCTTGGTGTTCACCACGACCGGCACTGCTGTCTGTCTACTATGGTTAAACCGGTTAGGCTTAGTCTTAT---GACTAGGCTTGATCGGGATGGCAGGTAGCTCTTTGGTTCTTGTCAGCTTCGGTTGGCTTGAGTCTTTGAGTGTAATTAGCTGACTATAGTGGATCTGTGCAGTGTGTCGGAGCTGGCGGCTTTGGTATGTGCATGCGTGCTATGGCCTTTTGGCGGAGCTGAGTCTGGTCGGCAAG-TTACCTGTTTTGACAGGTCGGTCGATGTCTTGGTTTCGTTCATTGGGTGGTGGCGTGTGTGATACTATCTTGGGCCAATAGTCTGTGGTGTAGTGGTAAACGATCCACCTGACCCGTCTTGAAACACGGACCAAGGAGTTTAACATGTACGCGAGTCATTGGGCGTTACGAAACCCAAAGGCGTAATGAAGGTAAAGGTTCGGCTTGTCCGAGCTGAGGTGAGATCCTGCTGTTTCCTTTGCCTTGCACTGTCAA-GCTTTCGAGCAGTAGGCGCATCACCAGCCCGTCTCATGATGTAGCCATGTAGCCTTGTGTTACGTGCACCGTCGGGGCGGAGCTAGAGCGTACACGTTGAGACCCGAAAGATGGTGAACTATGCTTGCGGAGGTTGAAGCCAGAGGAAACTCTGGTGGAGGACCGCAGCGATTCTGACGTGCAAATCGATCGTCTAACGTGAGTATAGGGGC Spirorchis_picta_KY091665 CCTAGTAACTGCGAGTGAAGAGGGATTAGCCCAGCACCGAAGCCTGTGGTCATTTGACTGCTAGGCAATGTGGTGTTTAGGTTGGTTCTTGGCATTACTGCTCTACTTCAAGTCCAGCAATGAGTACGGCTTACTGGAACGGCCCATAGAGGGTGAAAGGCCCGTGGGGGTAGAGG-C-----TTACAGTTTTGTCCTGAATTGACCATGGAGTCGGGTTGTTTGTGAATGCAGCCCAAAGTGGGTGGTAAACTCCATCTAAGGCTAAATACTGGCACGAGTCCGATAGTAAACAAGTACCGTGAGGGAAAGTTGAAAAGTACTTTGAAGAGAGAGTAAACAGTGCGTGAAACCGCTCAGAGGTAAACGGGTGGAGTTGAACTGCAATCCTTGAGGATTCAGCTGATGAGTATGATATGGGCTTGGACATATTGACTGGCGCTCAGG-GATCAGCGATTTGCTGGGTTTCTGCTCTTCGGGGTGGGAATGC-TTGTGTACTTGTCAAGTATACGGCTCTTTGGGTTGACTGGGTCTG-CTCGTCAGTGCACTTTCTCTTGGTGTTCACCACGACCGGCACTGCTGTCTGTCTACTATGGTTAAACCGGTTAGGCTTAGTCTCAT---GATTAGGCTTGATCGGGATGGCAGGTAGCTCTTTGATTCTTGTCAGCTTCGGTTGGCTTGAGTTTTTGAGTGTAATCAGCTGACTGTAGTGGATCTGTGCGGTGTGTCGGAGCTAGCGGCTTTGGTATGTGCATGCGTGCTATAGCCTTTTGGCGGAGCTAAGTCTGGTCGGCAAG-TTACCTGTTTGGGCAGGTCGGTCGATGTCTTGGTTTCGTTCATTGGGTGGTGGCGTGTGTGATACTGTCTTGGGCCAATAGTCTGTGGTGTAGTGGTAAACGATCCACCTGACCCGTCTTGAAACACGGACCAAGGAGTTTAACATGTACGCAAGTCATTGGGCGTTACGAAACCCAAAGGCGTAATGAAGGTAAAGGTTCGGCTTGTCCGAGCTGAGGTGAGATCCTGCTGTTTCCTTTGCCTTGCACTGTCAA-GCTTTAGAGCAGTAGGCGCATCACCAGCCCGTCTCATGATGTAGCCACGTAGCCTTGTGTTATGTGCACCGTCGGGGCGGAGCTAGAGCGTACACGTTGAGACCCGAAAGATGGTGAACTATGCTTGCGGAGGTTGAAGCCAGAGGAAACTCTGGTGGAGGACCGCAGCGATTCTGACGTGCAAATCGATCGTCTAACGTGAGTATAGGGGC Spirorchis_scripta_AY222174 CCTAGTAACTGCGAGTGAAGAGGGATTAGCCCAGCACCGAAGCCTGTGGTCATTTGACTGCTAGGCAATGTGGTGTTTAGGTTGGTTCTTGGCATTACTGCTCTACTCCAAGTCCAGCAATGAGTACGGCTTACTGGAACGGCCCATAGAGGGTGAAAGGCCCGTGGGGGTAGAGG-C-----TTACAGTTTTGTCCTGAATTGACCATGGAGTCGGGTTGTTTGTGAATGCAGCCCAAAGTGGGTGGTAAACTCCATCTAAGGCTAAATACTGGCACGAGTCCGATAGTAAACAAGTACCGTGAGGGAAAGTTGAAAAGTACTTTGAAGAGAGAGTAAACAGTGCGTGAAACCGCTCAGAGGTAAACGGGTGGAGTTGAACTGCAATCCTTGAGGATTCAGCTGATGAGTATGACATGGGCTTGGACATATTGACTGGCGCTCAGA-GATCAGCGATTTGCTGGGTTTCTGCTCTTCGGAGTGGGAATGCATTGTGTACTTGTCAAGTATACGGCTCTTTGGGTTGACCGGGTCTG-CTCGTCAGTGCACTTTCTCTTGGTGTTCACCACGACCGGCACTGCTGTCTGTCTACTATGGTTAAACCGGTTAGGCTTAGTCTTAT---GGCTAGGCTTGATCGGGATGGCAGGTAGCTCTTTGATTCTTGTCAGCTTCGGTTGCCTTGAGTCTTTGAGTGTAATTAGCTGACTGTAGTGGATCTGTGCAGTGTGTCGGAGCTGGCGGCTTTGGTATGTGCATGCGTGCTATGGCCTTTTGGCGGAGCTGAGTCTGGTCGGCAAG-TTACCTGTTTTGGCAGGTCGGTCGATGTCTTAGTTTCGTTCATTGGGTGGTGGCGTGTGTGATACTATCTTGGGCCAATAGTCTGTGGTGTAGTGGTAAACGATCCACCTGACCCGTCTTGAAACACGGACCAAGGAGTTTAACATGTACGCGAGTCATTGGGCGTTACGAAACCCAAAGGCGTAATGAAGGTAAAGGTTCGGCTTGTCCGAGCTGAGGTGAGATCCTGCTGTTTCCTTTGCCTTGCACTGTCAA-GCTTTCGAGCAGTAGGCGCATCACCAGCCCGTCTCATGATGTAGCCACGTAGCCTTGTGTTATGTGCACCGTCGGGGCGGAGCTAGAGCGTACACGTTGAGACCCGAAAGATGGTGAACTATGCTTGCGGAGGTTGAAGCCAGAGGAAACTCTGGTGGAGGACCGCAGCGATTCTGACGTGCAAATCGATCGTCTAACGTGAGTATAGGGGC Unicaecum_sp_AY604711 CCTAGTAACGGCGAGTGAAGAGGGAAAAGCCCAGCACCGAAGCCTGCGGTCACTTGACTGCTAGGCAATGTGGTGTTTAGGTTGATTCTTGGCAATATTGATCTATCCCAAGTCCAGCACTGAGTACGGCTTGTTGGAATGGCCCAAAGAGGGTGAAAGGCCCGTGGGGGTGGATCGCAAGTCTGATAGTATTGCCCTGAGTTGACCTTGGAGTCGGGTTGTTTGTGAATGCAGCCCAAAGCGGGTGGTAGACTCCATCCAAGGCTAAATACTGACACGAGTCCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGTACTTTGAAGAGAGAGTAAACAGTGCGTGAAACCGCTCAGAGGTAAACGGGTGGAGTTGAACTGCAATCCATGGGGATTCAGCTGATGAGTATGATGTGGGCTTGAACATATTGACCGCCTTTTGGG-GACCGCGTGCTAGC-GGGTTTCTGCTC-TTTGAGTGGGAATGTGCGAAGCGCTTATCAAGTGCTGTGCGCCCTGGAAGTTACGGGTCTG-CTCGTCAGTGCACTTTCTCATGGTGTTCACCACGACCGGCGCTGCTGTCTGTCTGCTGTGGTCAAACCGGTTTGGCTTGGTCCTTTGGATAATGGGCCTGATCGGGATGGCAGGTAGCTTGTGGATTCCT------------T---TTGGGGTCTCGAGTGTTAC-AGCTGGCTATAGTAGATCTGTGCAGTGTGTCGGGGCTGGCGGCTTTGGTGTGTGCATGCGTGCTATGGTCTTCTGGCGGGGTTGAGTCTGGTTGGCTTGTTTACCCGCTTCGGTGGGTC-GCTGATGGCTTGATCTCGTTTGGTTGGCAGTGGCGTGTGTGACACTTGCTTGGGCCTATAGTCTGTGGTGTAGTGGTAAACGATCCACCTGACCCGTCTTGAAACACGGACCAAGGAGTTTAACATGTACGCGAGTCATTGGGCGTTACGAAACCCAAAGGCGTAGTGAAGGTAAAGGTTCGGCCTGCCCGAGCTGAGGTGAGATCCTGTTGTTTCTTATGCCTTGAACTATTAA-GCAATCGAGCAGCAGGCGCATCACCGGCCCGTCCCATGACGTAGTCATGCA-TCACCTGGTGTGTGCACCGTCGGGGCGGAGCAAGAGCGTACACGTTGAGACCCGAAAGATGGTGAACTATGCTTGCGGAGGCTGAAGCCAGAGGAAACTCTGGTGGAGGGCCGCAGCGATTCTGACGTGCAAATCGATCGTCTAACGTGAGTATAGGGGC Vasotrema_robustum_AY604706 CCTAGTAACTGCGAGTGAAGAGGGATTAGCCCAGCACCGAAGCCTGTGGTCATTTGATTACTAGGCAATGTGGTGTTTAGGTTGGTTCTTGGCATTACTGCTCTGCTCCAAGTCCATTAATGAGTACGGCATATTGGAATGGCCCACAGAAGGTGAAAGGCCCGTGGGAGCTGAGATCATGTTGGACAGTTTTGCCCTGAATTGACCATGGAGTCGGGTTGTTTGTGAATGCAGCCCAAAGTGGGTGGTAAACTCCATCTAAGGCTAAATACTGGCACGAGTCCGATAGTAAACAAGTACCGTGAGGGAAAGTTGAAAAGTACTTTGAAGAGAGAGTAAACAGTGCGTGAAACTGCTCAGAGGTAAACGGGTGGAGTTGAACTGCAATCCTTGAGGATTCAGCTGATGAGTTTGATATGAGCTTGG-CATGTTGGCTGGCTCCTGGA-GTCCACTTAGCTGT-GGGTCCCTATTCATTTGAGTGGGGATGCGAGATGTGCTAACCATGCACTGTGCGCTCTGGGTTGTCCGGGTCTG-CTCGTCAGTGCACTTTCTCTTGGTGTTCACCACGACCGGCACTGCTGTCTGTTTGCTATGGTTAAACCGGCCAGGCATTTTCTT-----------GTTTGGTCGGGAGGGCAGGTAGCTCGTTGATTCTTGTTGGTTTCGGCTGGCTTGAGTTTTCGAGTGTAAT-AGCTGACTGTGGCGAACCTGTGCGGTGTGTCGGAGCTTGCGGCTTTGGTATGTGCATGCGTGCTATGGCCTTCTGGCGGGATTGAGTCTGGTCGGCAAG-TTACTTGCTTTGGCAGGTCGGTCGATGTCTCGGTTTCGTTCAGTTGGTGGTGGCGTGTGTGATGCTATCTTGGGCCTATAGTCTGTGGTGTAGTGGTAAACGTTCCACCTGACCCGTCTTGAAACACGGACCAAGGAGTTTAACATGTGCGCGAGTCATTGGGCGTTACGAAACCCAAAGGCGCAGTGAAAGTAAAGGTTCGGCTTGTCCGAGCTGAGGTGAGATCCTGCTGTTTCCTTTGCCTTG--ACTTCAA-GCATTAGAGCAGTAGGCGCATCACCAGCCCGTCTCATGATGTAGCCATCTAACCTTGTGTTATTTGCACCATCGGGGCGGAGCTAGAGCGTACACGTTGAGACCCGAAAGATGGTGAACTATGCTTGTGCAGGTTGAAGCCAGAGGAAACTCTGGTGGAGGACCGCAGCGATTCTGACGTGCAAATCGATCGTCAAACATGAGTATAGGGGC Vasotrema_cf_robustum_MH002457 -------------------------------AGGCACCGAAGCCTGTGGTCATTTGATTACTAGGCAATGTGGTGTTTAGGTTGGTTCTTGGCATTACTGCTCTGCTCCAAGTCCATTAATGAGTACGGCATATTGGAATGGCCCACAGAAGGTGAAAGGCCCGTGGGAGCTGAGATCATGTTGGACAGTTTTGCCCTGAATTGACCATGGAGTCGGGTTGTTTGTGAATGCAGCCCAAAGTGGGTGGTAAACTCCATCTAAGGCTAAATACTGGCACGAGTCCGATAGTAAACAAGTACCGTGAGGGAAAGTTGAAAAGTACTTTGAAGAGAGAGTAAACAGTGCGTGAAACTGCTCAGAGGTAAACGGGTGGAGTTGAACTGCAATCCTTGAGGATTCAGCTGATGAGTTTGATATGAGCTTGG-CATGTTGGCTGGCTCCTGGA-GTCCACTTAGCTGT-GGGTCCCTATTCATTTGAGTGGGGATGCGAGATGTGCTAACCATGCACTGTGCGCTCTGGGTTGTCCGGGTCTG-CTCGTCAGTGCACTTTCTCTTGGTGTTCACCACGACCGGCACTGCTGTCTGTTTGCTATGGTTAAACCGGCCAGGCATTTTCTT-----------GTTTGGTCGGGAGGGCAGGTAGCTCGTTGATTCTTGTTGGTTTCGGCTGGCTTGAGTTTTCGAGTGTAAT-AGCTGACTGTGGCGAACCTGTGCGGTGTGTCGGAGCTTGCGGCTTTGGTATGTGCATGCGTGCTATGGCCTTCTGGCGGGATTGAGTCTGGTCGGCAAG-TTACTTGCTTTGGCAGGTCGGTCGATGTCTCGGTTTCGTTCAGTTGGTGGTGGCGTGTGTGATGCTATCTTGGGCCTATAGTCTGTGGTGTAGTGGTAAACGTTCCACCTGACCCGTCTTGAAACACGGACCAAGGAGTTTAACATGTGCGCGAGTCATTGGGCGTTACGAAACCCAAAGGCGCAGTGAAAGTAAAGGTTCGGCTTGTCCGAGCTGAGGTGAGATCCTGCTGTTTCCTTTGCCTTG--ACTTCAA-GCATTAGAGCAGTAGGCGCATCACCAGCCCGTCTCATGATGTAGCCATCTAACCTTGTGTTATTTGCACCATCGGGGCGGAGCTAGAGCGTACACGTTGAGACCCGAAAGATGGTGAACTATGCTTGTGCAGGTTGAAGCCAGAGGAAACTCTGGTGGAGGACCGCAGCGATTCTGACGTGCAAATCGATCGTCAAACATGAGTATAGGGGC Spirorchis_haematobius_MH002458 -----------------------------------ACCGAAGCCTGTGGTCATTTGACTGCTAGGCAATGTGGTGTTTAGGTTGGTTCTTGGCATTACTGCTCTACTCCAAGTCCAGCAATGAGTACGGCTTACTGGAACGGCCCATAGAGGGTGAAAGGCCCGTGGGGGTAGAGG-C-----TTACAGTTTTGTCCTGAATTGACCATGGAGTCGGGTTGTTTGTGAATGCAGCCCAAAGTGGGTGGTAAACTCCATCTAAGGCTAAATACTGGCACGAGTCCGATAGTAAACAAGTACCGTGAGGGAAAGTTGAAAAGTACTTTGAAGAGAGAGTAAACAGTGCGTGAAACCGCTCAGAGGTAAACGGGTGGAGTTGAACTGCAATCCTTGAGGATTCAGCTGATGAGTATGACATGGGCTTGGACATATTGACTGGCGCTCAGA-GATCAGCGATTTGCTGGGTTTCTGCTCTTCGGGGTGGGAATGCATTGTGTACTTGTCAAGTACACGGCTCTTTGGGTTGACCGGGTCTG-CTCGTCAGTGCACTTTCTCTTGGTGTTCACCACGACCGGCACTGCTGTCTGTCTACTGTGGTTAAACCGGTTAGGCTTAGTCTAAT---GGCTAGGCTTGATCGGGATGGCAGGTAGCTCTTTGATTCTTGTCAGCTTCGGTTGGCTTGAGTTTCTGAGTGTAATCAGCTGACTGTAGTGGATCTGTGCAGTGTGTCGGAGCTGGCGGCTTTGGTATGTGCATGCGTGCTATGGCCTTTTGGCGGAGCTGAGTCTGGTCGGCAAG-TTACCTGTTTTGGCAGGTCGGTCGATGTCTTGGTTTCGTTCATTGGGTGGTGGCGTGTGTGATACTATCTTGGGCCAATAGTCTGTGGTGTAGTGGTAAACGATCCACCTGACCCGTCTTGAAACACGGACCAAGGAGTTTAACATGTACGCGAGTCATTGGGCGTTACGAAACCCAAAGGCGTAATGAAGGTAAAGGTTCGGCTTGTCCGAGCTGAGGTGAGATCCTGCTGTTTCCTTTGCCTTGCACTGTCAA-GCTTTCGAGCAGTAGGCGCATCACCAGCCCGTCTCATGATGTAGCCACGTAGCCTTGTGTTATGTGCACCGTCGGGGCGGAGCTAGAGCGTACACGTTGAGACCCGAAAGATGGTGAACTATGCTTGTGGAGGTTGAAGCCAGAGGAAACTCTGGTGGAGGACCGCAGCGATTCTGACGTGCAAATCGATCGTCTAACATGAGTATAGGGGC ; END; BEGIN SETS; CHARSET Excluded = 177 - 183 445 - 448 476 - 478 620 - 630 688 - 691 1038 - 1041 1051 - 1060; END; BEGIN mrbayes; Exclude 177 -183 445 -448 476 -478 620 -630 688 -691 1038 -1041 1051 -1060; lset nst = 6 rates = gamma; mcmc Nruns = 4 ngen = 1000000; sump Nruns = 4; sumt Nruns = 4; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 1272; EXSET * UNTITLED = 177 - 183 445 - 448 476 - 478 620 - 630 688 - 691 1038 - 1041 1051 - 1060; EXSET Inclusion_Set = 177 - 183 445 - 448 476 - 478 620 - 630 688 - 691 1038 - 1041 1051 - 1060; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 1272; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 1272; END; BEGIN TREES; Title Spirorchis_result; ID 0161f8d583681; LINK Taxa = Taxa; TRANSLATE [0] 1 Baracktrema_obamai_KY243883, [1] 2 Hapalotrema_mehrai_AY604708, [2] 3 Learedius_learedi_AY604707, [3] 4 Spirhapalum_polesianum_AY604705, [4] 5 Spirhapalum_siamensis_FJ481166, [5] 6 Spirorchis_artericola_AY604704, [6] 7 Spirorchis_cf_scripta_KY091666, [7] 8 Spirorchis_collinsi_KY091664, [8] 9 Spirorchis_haematobius_FJ481164, [9] 10 Spirorchis_testiplexus_MH002459, [10] 11 Spirorchis_picta_KY091665, [11] 12 Spirorchis_scripta_AY222174, [12] 13 Unicaecum_sp_AY604711, [13] 14 Vasotrema_robustum_AY604706, [14] 15 Vasotrema_cf_robustum_MH002457, [15] 16 Spirorchis_haematobius_MH002458; TREE 'PAUP_1' = ((2:0.022909,3:0.009595):0.0886075,((1:0.096276,13:0.085088):0.023706,((14:0.0,15:0.001676):0.07181,(4:0.027998,(5:0.047581,((8:0.010046,11:0.008415):0.003548,((9:0.0,16:0.0):0.006113,((6:0.000813,10:0.001616):0.002486,(7:0.0,12:0.001617):0.00076):0.002135):0.0):0.018951):0.012281):0.015254):0.042015):0.0886075); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1520366018438; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 2676870157745440347; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 9199056051736803534; mqVersion 331; checksumv 0 3 1757304483 null getNumChars 1272 numChars 1272 getNumTaxa 16 numTaxa 16 short true bits 15 states 15 sumSquaresStatesOnly 467386.0 sumSquares 467386.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 180; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1178 517; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #2676870157745440347 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 0161f8d583681; toggleUseWeights off; endTell; setAssignedID 1294.1520298216234.7306129109210150050; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 998 445; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.arrow; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; setDigits 4; setThreshold ?; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #9199056051736803534 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 210; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 998 445; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 16 6 1 1; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;