#NEXUS [written Fri Apr 13 10:43:37 CEST 2018 by Mesquite version 3.40 (build 877) at PC-BORCHIELLINI/172.20.36.92] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=15; TAXLABELS 'M.musculus_PAR6A/1-255' 'M.musculus_PAR6B/1-255' 'H.sapiens_Par6C/1-255' 'D.melanogaster_PAR6/1-258' 'N.vectensis/1-221' 'T.adhaerens/1-239' M.leidyi 'O.lobularis/1-235' 'O.carmela/1-235' 'A.queenslandica/1-254' 'P.ficiformis/1-118' 'S.ciliatum/1-241' 'L.complicata/1-239' 'O.minuta/1-251' 'A.vastus/1-249' ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=271; FORMAT DATATYPE = Protein GAP = - MISSING = ?; MATRIX 'M.musculus_PAR6A/1-255' M------ARPQR----TPARSPDSIVEVKSKFDAEFRRFALPRTSV-RGFQEFSRLLCVVHQIPGL-DVLLGYTDA-HGDLLPLTNDDSLHRALASGPPPLRLLVQKRAEGDSSGLAFASNSLQRRKKG--LLLRPVAPLRTRPPLLISLPQDFRQVSSVIDVDLLPETHRRVRLHKHGSDRPLGFYIRDGMSVRVAPQG-LERVPGIFISRLVRGGLAESTGLLAVSDEILEVNGIEVAGKTLDQVTDMMVANSHNLIVTVKPANQRNNV 'M.musculus_PAR6B/1-255' M------NRGHR---HGASSGCLGTMEVKSKFGAEFRRFSLERSKP-GKFEEFYGLLQHVHKIPNV-DVLVGYAD-IHGDLLPINNDDNYHKAVSTANPLLRIFIQKK--EEADYSAFGTDTLIRKKNMLSNVLRPDNH-RKKPHIVISMPQDFRPVSSIIDVDILPETHRRVRLYKYGTEKPLGFYIRDGSSVRVTPHG-LEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQRNNV 'H.sapiens_Par6C/1-255' M------ARPQR---TTPARSPDSIVEVKSKFDAEFRRFALPRASV-SGFQEFSRLLRAVHQIPGL-DVLLGYTDA-HGDLLPLTNDDSLHRALASGPPPLRLLVQKR-EADSSGLAFASNSLQRRKKG--LLLRPVAPLRTRPPLLISLPQDFRQVSSVIDVDLLPETHRRVRLHKHGSDRPLGFYIRDGMSVRVAPQG-LERVPGIFISRLVRGGLAESTGLLAVSDEILEVNGIEVAGKTLDQVTDMMVANSHNLIVTVKPANQRNNV 'D.melanogaster_PAR6/1-258' M------SKNKINTTSATAASDTNLIEVKSKFDAEFRRWSFKRNEAEQSFDKFASLIEQLHKLTNI-QFLILYIDPRDNDLLPINNDDNFGRALKTARPLLRVIVQRK--DDLNEYSGFGTMKPRNLIG--SILMGHTP-VKTKAPSISIPHDFRQVSAIIDVDIVPETHRRVRLLKHGSDKPLGFYIRDGTSVRVTASG-LEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSNLIITVKPANQRTLT 'N.vectensis/1-221' M------SKLQKQSQKFSNHLNLSIAEVKSKFDAEFRRFPLDREKF-KSYERFYDY----RQIREP----------------PIFRNNGEGYGQNGFPP---------------------EISGVKKRTLFSTISNPSK-TTISRVNISTPQDFRRVSAIVDVDILPETHRRVRLLKHNSDKPLGFYIRDGTSVRVTPSG-LERVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIDVSGKTLDQVTDMMIANSHNLIITVKPANQMNNP 'T.adhaerens/1-239' M-------------PRATTANESTLVEIKSKFDAEFRRFSFDKKQI-TSFDDFFDLIMRMHRLREN-DYILAYTDPVHGDFLPINNNENFARAVSTAKPLLRLCVQRK--GDQIRIFD-------------SHNKGNKK-SKLNSLQISLPSDFRKVSSIVDADVLPVTQRRVKLVRGNSSKPLGFYIRDGISIRVTSNG-IEKVPGIFISRLISGGLAASTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMVANSQNLIITVRPANQEVGI M.leidyi M-TYPDDSNGGSGRPKSIALYNPALLEIKSKYYNDIRRYSIEKDQI-TSLEDFLAIVTNIHRIPEK-TVLISYTDPIEKDELPITNNNNLEKAISTSKSMLRVHLFKE--SDADLMYQ-------------RLCKPPE--KKVNSLQISAPKEFRQVSSVLDADSLPTWKRRVKLMKHASDKPLGFYIRDGSSVSVSDDG-IQKKPGIFISRLLPGGLADSTGLLSVGDEILEVNNISIDGKSLDQVTDMMVANAQNLIITVKPTTQPKPT 'O.lobularis/1-235' MP------------------FDPLLVEVKSKFDSEYRRFSFNRERV-ATYDEFYQLIGTRHRILDAVDFTTSYTDPIHGDLLPINNDDNFKRALKTATPLLRVFLYRK--SDLTYLDSNPSKTRRK--------------SKNPLPSISNPQDFRRVSSIVDADELPDTVRRVKLLKQSSDKPLGFYIRDGTSVHVTPQG-LERVPGIFISRLVPGGLAESTGLLAVNDEILEVNGIEVAGKTLDQVTDIMVANSQNLIITVKPASQTSAG 'O.carmela/1-235' MP------------------FDPLLVEVKSKFDSEYRRFSFNRERI-ATYEDFYLLIGTKHRILDVVDFTTSYTDPLRGDLLPINNDDNLKRALKTATPLLRVFLYRK--SDLTYLDSNPSKTRKK--------------SKNPMLSISNPQDFRRVSSIVDADLLPETVRRVKLLKQSSDKPLGFYIRDGTSVHVTPQG-LERVPGIFISRLVPGGLAESTGLLAVNDEILEVNGIEVAGKTLDQVTDIMVANSQNLIITVKPATQGQTG 'A.queenslandica/1-254' M------SATPSRRSPGQPGYDPNLVEVKSKFEYEYRRFSIDRTQL-TQYDELSALIKESHNLPTDMPFTVSYTNPKNDDILPINNDKNMNSAFQTAMPFIKLFIYRE--RELMDAEIKLQEKKKKSKSLFSE-------SVNSSTVIGAPKEFRKVSSIVDADLLPDTVRRVKLVKQSTDRPLGFYIRDGTSVRVTPYG-LEKVPGIFISRLVPGGLAEGTGLLSVNDEIIEVNGIETLGKSLDQVTDMMVANSQNLIITVKPSTLPPST 'P.ficiformis/1-118' --------------------------------------------------------------------------------------------------------------------------------------------------------?FRKVGSIVDADLLPDTVRRVKLVKQSTDRPLGFYIRDGTSVRVTPYG-LEKVPGIFISRLVPGGLAEGTGLLSVNDEIIEVNGIETLGKSLDQVTDMMVANSQNLIITVKPASLPPST 'S.ciliatum/1-241' -----------------MA---DDVVEVKSKFEQEYRRFSMKRTEL-KTFELFMLHIKSLHKVGDVDSVSISYTEPLRGDLLPINNDDNFAHAVSLSKPLLRIFVYRG--QDALLADMFQQARKRKVAG----LRPD---KKLGQIQIGTPEDFRKVSAIVDADLLPETVRRVKLLKHSSNKPLGFYIRDGMSTRVTPQNVLEKVPGIFISRLVPGGLAEGTGLLAVDDEILEVNGIEVTGKTLDQVTDMMVANSQNLIITVKPGKQAVRE 'L.complicata/1-239' -----------------MA-ADASTVEVKSKFEQEYRRFHINKGEI-TTFDGFYKFIRTLHKLLDVDGVTISYTDPLRGDLLPINNDDNFAHALSLSKPLLRLFVYRG--QDALLADMFQQARKRKVAN-----------KKLTQIQIGTPEDFRKVSAIVDADLLPETVRRVKLLKHSSNKPLGFYIRDGMSTRVTAQNVLEKVPGIFISRLVPGGLAEGTGLLAVDDEILEVNGIEVTGKSLDQVTDMMVANSQNLIITVKPGKQAVRE 'O.minuta/1-251' MSILLENYNPDLCSVFTNPQYNPDAVEVKAKFEMQFRRFNIFRGEF-NQIEDFYTVIREQFGLTLDMAFHISYTDPIHQDLLPINNNDNLAKAFTTANPLIKLYLYRR--EDLMWE---------------DIAKRKRG-TKLPIISIGMPQDFRQVSTILYQEGQPPQVLRVKLIKHSPDQKLGFYVRDGKSVRMTTNG-IERVDSFFISRLVAGGLAEGTGLLSVEDEILEVNGIEVAGKTLDQVTDIMVANSKNLILTIQPASAPKMA 'A.vastus/1-249' M--ALDFLNPSLIKISTFPLYDTNIVEIKAKFEMQYRRFNIYREDY-TQVEEFYTIVREEFGLSLDMPFHISYTDPIHQDLLPINNDDNLAKSLSTANPHIKLFLYRR--EDLMWE---------------DIAKRKKG-NKVPIVSIGMPQDFRQVSTILYQEGQPPQVLRVKLIKHSPDQKLGFYVRDGKSVRMTTNG-IERIDSFFISRLVLGGLAEGTGLLSVEDEILEVNGIEVAGKTLDQVTDIMVANSKNLILTIQPASAPKMA ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 271; END; BEGIN NOTES; TAXABITS NAME = newlyAddedTaxon on = 1 - 15; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 271; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 271; END; BEGIN TREES[!'Parameters: Tree search criterion: minimize Tree value using character matrix']; Title 'Trees from Mesquite''s heuristic search'; ID 0162be2b8d1a7; LINK Taxa = Taxa; TRANSLATE [0] 1 'M.musculus_PAR6A/1-255', [1] 2 'M.musculus_PAR6B/1-255', [2] 3 'H.sapiens_Par6C/1-255', [3] 4 'D.melanogaster_PAR6/1-258', [4] 5 'N.vectensis/1-221', [5] 6 'T.adhaerens/1-239', [6] 7 M.leidyi, [7] 8 'O.lobularis/1-235', [8] 9 'O.carmela/1-235', [9] 10 'A.queenslandica/1-254', [10] 11 'P.ficiformis/1-118', [11] 12 'S.ciliatum/1-241', [12] 13 'L.complicata/1-239', [13] 14 'O.minuta/1-251', [14] 15 'A.vastus/1-249'; TREE 'Tree 1 from search (criterion: minimize Tree value using character matrix)' = ((1,((4,(((6,7),((((10,11),(15,14)),(13,12)),(9,8))),5)),2)),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 2 from search (criterion: minimize Tree value using character matrix)' = ((((4,(((6,7),((((10,11),(15,14)),(13,12)),(9,8))),5)),2),3),1)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 3 from search (criterion: minimize Tree value using character matrix)' = (((4,(((6,7),((((10,11),(15,14)),(13,12)),(9,8))),5)),2),(1,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 4 from search (criterion: minimize Tree value using character matrix)' = ((1,((4,((6,(((((10,11),(15,14)),7),(13,12)),(9,8))),5)),2)),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 5 from search (criterion: minimize Tree value using character matrix)' = ((1,((4,((6,(((((10,11),7),(15,14)),(13,12)),(9,8))),5)),2)),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 6 from search (criterion: minimize Tree value using character matrix)' = ((1,((4,((6,((((10,11),(7,(15,14))),(13,12)),(9,8))),5)),2)),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 7 from search (criterion: minimize Tree value using character matrix)' = ((1,((4,((6,((((10,11),(15,14)),(7,(13,12))),(9,8))),5)),2)),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 8 from search (criterion: minimize Tree value using character matrix)' = ((1,(5,((4,((6,7),((((10,11),(15,14)),(13,12)),(9,8)))),2))),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 9 from search (criterion: minimize Tree value using character matrix)' = ((((4,((6,(((((10,11),(15,14)),7),(13,12)),(9,8))),5)),2),3),1)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 10 from search (criterion: minimize Tree value using character matrix)' = ((((4,((6,(((((10,11),7),(15,14)),(13,12)),(9,8))),5)),2),3),1)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 11 from search (criterion: minimize Tree value using character matrix)' = ((((4,((6,((((10,11),(7,(15,14))),(13,12)),(9,8))),5)),2),3),1)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 12 from search (criterion: minimize Tree value using character matrix)' = ((((4,((6,((((10,11),(15,14)),(7,(13,12))),(9,8))),5)),2),3),1)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 13 from search (criterion: minimize Tree value using character matrix)' = (((((4,((6,7),((((10,11),(15,14)),(13,12)),(9,8)))),2),5),3),1)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 14 from search (criterion: minimize Tree value using character matrix)' = ((2,(1,3)),(4,(((6,7),((((10,11),(15,14)),(13,12)),(9,8))),5)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 15 from search (criterion: minimize Tree value using character matrix)' = (2,((4,(((6,7),((((10,11),(15,14)),(13,12)),(9,8))),5)),(1,3)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 16 from search (criterion: minimize Tree value using character matrix)' = (((4,((6,(((((10,11),(15,14)),7),(13,12)),(9,8))),5)),2),(1,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 17 from search (criterion: minimize Tree value using character matrix)' = (((4,((6,(((((10,11),7),(15,14)),(13,12)),(9,8))),5)),2),(1,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 18 from search (criterion: minimize Tree value using character matrix)' = (((4,((6,((((10,11),(7,(15,14))),(13,12)),(9,8))),5)),2),(1,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 19 from search (criterion: minimize Tree value using character matrix)' = (((4,((6,((((10,11),(15,14)),(7,(13,12))),(9,8))),5)),2),(1,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 20 from search (criterion: minimize Tree value using character matrix)' = ((((4,((6,7),((((10,11),(15,14)),(13,12)),(9,8)))),2),(1,3)),5)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 21 from search (criterion: minimize Tree value using character matrix)' = ((((4,((6,7),((((10,11),(15,14)),(13,12)),(9,8)))),2),5),(1,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 22 from search (criterion: minimize Tree value using character matrix)' = (((4,((6,7),((((10,11),(15,14)),(13,12)),(9,8)))),2),(5,(1,3)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 23 from search (criterion: minimize Tree value using character matrix)' = ((1,((4,((6,((((10,11),(15,14)),7),((13,12),(9,8)))),5)),2)),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 24 from search (criterion: minimize Tree value using character matrix)' = ((1,((((6,(((((10,11),7),(15,14)),(13,12)),(9,8))),4),5),2)),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 25 from search (criterion: minimize Tree value using character matrix)' = ((1,((((6,4),(((((10,11),7),(15,14)),(13,12)),(9,8))),5),2)),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 26 from search (criterion: minimize Tree value using character matrix)' = ((1,(5,((4,(6,(((((10,11),7),(15,14)),(13,12)),(9,8)))),2))),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 27 from search (criterion: minimize Tree value using character matrix)' = ((1,((((6,((((10,11),(7,(15,14))),(13,12)),(9,8))),4),5),2)),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 28 from search (criterion: minimize Tree value using character matrix)' = ((1,(5,((4,(6,((((10,11),(7,(15,14))),(13,12)),(9,8)))),2))),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 29 from search (criterion: minimize Tree value using character matrix)' = ((1,((((6,4),((((10,11),(15,14)),(7,(13,12))),(9,8))),5),2)),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 30 from search (criterion: minimize Tree value using character matrix)' = ((1,(5,((4,(6,((((10,11),(15,14)),(7,(13,12))),(9,8)))),2))),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 31 from search (criterion: minimize Tree value using character matrix)' = ((1,(5,(((6,7),(4,((((10,11),(15,14)),(13,12)),(9,8)))),2))),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 32 from search (criterion: minimize Tree value using character matrix)' = ((((4,((6,((((10,11),(15,14)),7),((13,12),(9,8)))),5)),2),3),1)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 33 from search (criterion: minimize Tree value using character matrix)' = ((((((6,(((((10,11),7),(15,14)),(13,12)),(9,8))),4),5),2),3),1)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 34 from search (criterion: minimize Tree value using character matrix)' = ((((((6,4),(((((10,11),7),(15,14)),(13,12)),(9,8))),5),2),3),1)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 35 from search (criterion: minimize Tree value using character matrix)' = (((((4,(6,(((((10,11),7),(15,14)),(13,12)),(9,8)))),2),5),3),1)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 36 from search (criterion: minimize Tree value using character matrix)' = ((((((6,((((10,11),(7,(15,14))),(13,12)),(9,8))),4),5),2),3),1)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 37 from search (criterion: minimize Tree value using character matrix)' = (((((4,(6,((((10,11),(7,(15,14))),(13,12)),(9,8)))),2),5),3),1)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 38 from search (criterion: minimize Tree value using character matrix)' = ((((((6,4),((((10,11),(15,14)),(7,(13,12))),(9,8))),5),2),3),1)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 39 from search (criterion: minimize Tree value using character matrix)' = (((((4,(6,((((10,11),(15,14)),(7,(13,12))),(9,8)))),2),5),3),1)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 40 from search (criterion: minimize Tree value using character matrix)' = ((((((6,7),(4,((((10,11),(15,14)),(13,12)),(9,8)))),2),5),3),1)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 41 from search (criterion: minimize Tree value using character matrix)' = ((4,(2,(1,3))),(((6,7),((((10,11),(15,14)),(13,12)),(9,8))),5))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 42 from search (criterion: minimize Tree value using character matrix)' = (4,((2,(1,3)),(((6,7),((((10,11),(15,14)),(13,12)),(9,8))),5)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 43 from search (criterion: minimize Tree value using character matrix)' = ((2,(1,3)),(4,((6,(((((10,11),(15,14)),7),(13,12)),(9,8))),5)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 44 from search (criterion: minimize Tree value using character matrix)' = ((2,(1,3)),(4,((6,(((((10,11),7),(15,14)),(13,12)),(9,8))),5)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 45 from search (criterion: minimize Tree value using character matrix)' = ((2,(1,3)),(4,((6,((((10,11),(7,(15,14))),(13,12)),(9,8))),5)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 46 from search (criterion: minimize Tree value using character matrix)' = ((2,(1,3)),(4,((6,((((10,11),(15,14)),(7,(13,12))),(9,8))),5)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 47 from search (criterion: minimize Tree value using character matrix)' = ((2,(5,(1,3))),(4,((6,7),((((10,11),(15,14)),(13,12)),(9,8)))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 48 from search (criterion: minimize Tree value using character matrix)' = (2,((4,((6,(((((10,11),(15,14)),7),(13,12)),(9,8))),5)),(1,3)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 49 from search (criterion: minimize Tree value using character matrix)' = (2,((4,((6,(((((10,11),7),(15,14)),(13,12)),(9,8))),5)),(1,3)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 50 from search (criterion: minimize Tree value using character matrix)' = (2,((4,((6,((((10,11),(7,(15,14))),(13,12)),(9,8))),5)),(1,3)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 51 from search (criterion: minimize Tree value using character matrix)' = (2,((4,((6,((((10,11),(15,14)),(7,(13,12))),(9,8))),5)),(1,3)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 52 from search (criterion: minimize Tree value using character matrix)' = (2,((4,((6,7),((((10,11),(15,14)),(13,12)),(9,8)))),(5,(1,3))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 53 from search (criterion: minimize Tree value using character matrix)' = (((4,((6,((((10,11),(15,14)),7),((13,12),(9,8)))),5)),2),(1,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 54 from search (criterion: minimize Tree value using character matrix)' = (((((6,(((((10,11),7),(15,14)),(13,12)),(9,8))),4),5),2),(1,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 55 from search (criterion: minimize Tree value using character matrix)' = (((((6,4),(((((10,11),7),(15,14)),(13,12)),(9,8))),5),2),(1,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 56 from search (criterion: minimize Tree value using character matrix)' = ((((4,(6,(((((10,11),7),(15,14)),(13,12)),(9,8)))),2),(1,3)),5)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 57 from search (criterion: minimize Tree value using character matrix)' = ((((4,(6,(((((10,11),7),(15,14)),(13,12)),(9,8)))),2),5),(1,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 58 from search (criterion: minimize Tree value using character matrix)' = (((4,(6,(((((10,11),7),(15,14)),(13,12)),(9,8)))),2),(5,(1,3)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 59 from search (criterion: minimize Tree value using character matrix)' = (((((6,((((10,11),(7,(15,14))),(13,12)),(9,8))),4),5),2),(1,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 60 from search (criterion: minimize Tree value using character matrix)' = ((((4,(6,((((10,11),(7,(15,14))),(13,12)),(9,8)))),2),(1,3)),5)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 61 from search (criterion: minimize Tree value using character matrix)' = ((((4,(6,((((10,11),(7,(15,14))),(13,12)),(9,8)))),2),5),(1,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 62 from search (criterion: minimize Tree value using character matrix)' = (((4,(6,((((10,11),(7,(15,14))),(13,12)),(9,8)))),2),(5,(1,3)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 63 from search (criterion: minimize Tree value using character matrix)' = (((((6,4),((((10,11),(15,14)),(7,(13,12))),(9,8))),5),2),(1,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 64 from search (criterion: minimize Tree value using character matrix)' = ((((4,(6,((((10,11),(15,14)),(7,(13,12))),(9,8)))),2),(1,3)),5)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 65 from search (criterion: minimize Tree value using character matrix)' = ((((4,(6,((((10,11),(15,14)),(7,(13,12))),(9,8)))),2),5),(1,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 66 from search (criterion: minimize Tree value using character matrix)' = (((4,(6,((((10,11),(15,14)),(7,(13,12))),(9,8)))),2),(5,(1,3)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 67 from search (criterion: minimize Tree value using character matrix)' = (((((6,7),(4,((((10,11),(15,14)),(13,12)),(9,8)))),2),(1,3)),5)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 68 from search (criterion: minimize Tree value using character matrix)' = (((((6,7),(4,((((10,11),(15,14)),(13,12)),(9,8)))),2),5),(1,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 69 from search (criterion: minimize Tree value using character matrix)' = ((((6,7),(4,((((10,11),(15,14)),(13,12)),(9,8)))),2),(5,(1,3)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 70 from search (criterion: minimize Tree value using character matrix)' = ((1,(5,((4,(6,((((10,11),(15,14)),7),((13,12),(9,8))))),2))),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 71 from search (criterion: minimize Tree value using character matrix)' = ((1,(((6,4),((((10,11),(15,14)),(7,(13,12))),(9,8))),(5,2))),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 72 from search (criterion: minimize Tree value using character matrix)' = ((1,(5,(((6,4),((((10,11),(15,14)),(7,(13,12))),(9,8))),2))),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 73 from search (criterion: minimize Tree value using character matrix)' = (((((4,(6,((((10,11),(15,14)),7),((13,12),(9,8))))),2),5),3),1)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 74 from search (criterion: minimize Tree value using character matrix)' = ((((5,2),((6,4),((((10,11),(15,14)),(7,(13,12))),(9,8)))),3),1)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 75 from search (criterion: minimize Tree value using character matrix)' = (((5,(((6,4),((((10,11),(15,14)),(7,(13,12))),(9,8))),2)),3),1)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 76 from search (criterion: minimize Tree value using character matrix)' = ((((6,7),((((10,11),(15,14)),(13,12)),(9,8))),(4,(2,(1,3)))),5)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 77 from search (criterion: minimize Tree value using character matrix)' = (((6,7),((((10,11),(15,14)),(13,12)),(9,8))),((4,(2,(1,3))),5))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 78 from search (criterion: minimize Tree value using character matrix)' = ((4,(2,(1,3))),((6,(((((10,11),(15,14)),7),(13,12)),(9,8))),5))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 79 from search (criterion: minimize Tree value using character matrix)' = ((4,(2,(1,3))),((6,(((((10,11),7),(15,14)),(13,12)),(9,8))),5))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 80 from search (criterion: minimize Tree value using character matrix)' = ((4,(2,(1,3))),((6,((((10,11),(7,(15,14))),(13,12)),(9,8))),5))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 81 from search (criterion: minimize Tree value using character matrix)' = ((4,(2,(1,3))),((6,((((10,11),(15,14)),(7,(13,12))),(9,8))),5))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 82 from search (criterion: minimize Tree value using character matrix)' = ((4,(2,(5,(1,3)))),((6,7),((((10,11),(15,14)),(13,12)),(9,8))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 83 from search (criterion: minimize Tree value using character matrix)' = (4,((2,(1,3)),((6,(((((10,11),(15,14)),7),(13,12)),(9,8))),5)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 84 from search (criterion: minimize Tree value using character matrix)' = (4,((2,(1,3)),((6,(((((10,11),7),(15,14)),(13,12)),(9,8))),5)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 85 from search (criterion: minimize Tree value using character matrix)' = (4,((2,(1,3)),((6,((((10,11),(7,(15,14))),(13,12)),(9,8))),5)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 86 from search (criterion: minimize Tree value using character matrix)' = (4,((2,(1,3)),((6,((((10,11),(15,14)),(7,(13,12))),(9,8))),5)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 87 from search (criterion: minimize Tree value using character matrix)' = (4,((2,(5,(1,3))),((6,7),((((10,11),(15,14)),(13,12)),(9,8)))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 88 from search (criterion: minimize Tree value using character matrix)' = ((2,(1,3)),(4,((6,((((10,11),(15,14)),7),((13,12),(9,8)))),5)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 89 from search (criterion: minimize Tree value using character matrix)' = (4,((6,(((((10,11),7),(15,14)),(13,12)),(9,8))),((2,(1,3)),5)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 90 from search (criterion: minimize Tree value using character matrix)' = ((2,(1,3)),(((6,(((((10,11),7),(15,14)),(13,12)),(9,8))),4),5))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 91 from search (criterion: minimize Tree value using character matrix)' = ((2,(1,3)),(((6,4),(((((10,11),7),(15,14)),(13,12)),(9,8))),5))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 92 from search (criterion: minimize Tree value using character matrix)' = (((2,(1,3)),(4,(6,(((((10,11),7),(15,14)),(13,12)),(9,8))))),5)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 93 from search (criterion: minimize Tree value using character matrix)' = (((2,(1,3)),5),(4,(6,(((((10,11),7),(15,14)),(13,12)),(9,8)))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 94 from search (criterion: minimize Tree value using character matrix)' = ((2,(5,(1,3))),(4,(6,(((((10,11),7),(15,14)),(13,12)),(9,8)))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 95 from search (criterion: minimize Tree value using character matrix)' = (4,((6,((((10,11),(7,(15,14))),(13,12)),(9,8))),((2,(1,3)),5)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 96 from search (criterion: minimize Tree value using character matrix)' = ((2,(1,3)),(((6,((((10,11),(7,(15,14))),(13,12)),(9,8))),4),5))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 97 from search (criterion: minimize Tree value using character matrix)' = (((2,(1,3)),(4,(6,((((10,11),(7,(15,14))),(13,12)),(9,8))))),5)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 98 from search (criterion: minimize Tree value using character matrix)' = (((2,(1,3)),5),(4,(6,((((10,11),(7,(15,14))),(13,12)),(9,8)))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 99 from search (criterion: minimize Tree value using character matrix)' = ((2,(5,(1,3))),(4,(6,((((10,11),(7,(15,14))),(13,12)),(9,8)))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 100 from search (criterion: minimize Tree value using character matrix)' = ((2,(1,3)),(((6,4),((((10,11),(15,14)),(7,(13,12))),(9,8))),5))[% ] [% ] [% setBetweenBits = selected ]; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1523609017106; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 5042346035851993641; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 9218910472507028347; mqVersion 340; checksumv 0 3 1310291567 null getNumChars 271 numChars 271 getNumTaxa 15 numTaxa 15 short false bits 1048575 states 1048575 sumSquaresStatesOnly 2.8415231081066E13 sumSquares 2.8415231081066E13 longCompressibleToShort false usingShortMatrix false NumFiles 1 NumMatrices 1 errorReportedDuringRun; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 201; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 464; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #5042346035851993641 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 0162be2b8d1a7; toggleUseWeights off; endTell; setAssignedID 1764.1523609002016.2210872974732436655; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 499 392; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; toggleShow consensusFrequency; toggleShow bootstrapFrequency; toggleShow posteriorProbability; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; setDigits 4; setThreshold ?; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;