#NEXUS [written Tue Apr 17 14:02:02 CEST 2018 by Mesquite version 3.40 (build 877) at PC-BORCHIELLINI/172.20.36.92] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=47; TAXLABELS 'Xenopus_Crb2' 'Daphnia_Crb' 'Apis_Crb_iso1' 'Nasonia_Crb-iso1' 'Fruitfly_CrbB' 'AnophelesD_Crb' 'Tribolium_Crb' 'Saccoglossus_CrbL' 'Urchin_Crb1' 'Aplysia_Crb' 'Takifugu_Crb1' 'Danio_Crb1' 'Gallus_Crb1' 'Caw_Crb1' 'Opossum_Crb1' 'Dog_Crb1' 'Chimpanzee_Crb1' 'HUMAN_CRUM1' 'Macaca_Crb1' 'MOUSE_CRUM1' 'Xenopus_Crb1' 'Gallus_Crb2_iso12' 'Opossum_Crb2' 'MOUSE_CRUM2' 'Caw_Crb2' 'HUMAN_CRUM2' 'Chimpanzee_Crb2' 'Macaca_Crb2' 'Danio_Crb2' 'Takifugu_Crb2' 'Xenopus_Crb3' 'MOUSE_CRUM3' 'C.elegans_CRB3' 'Macaca_Crb3' 'HUMAN_CRUM3' 'Danio_Crb3' 'Opossum_Crb3' 'C.elegans_CRB1' 'Nematostella_CrbB' 'Nematostella_CrbA' 'Trichoplax_CrbA' 'Trichoplax_CrbB' 'O.lobularis_crb' 'A.queenslandica_crb' 'S.ciliatum_crb' O.minuta A.vastus ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=71; FORMAT DATATYPE = Protein GAP = - MISSING = ?; MATRIX 'Xenopus_Crb2' ASTLVGSAIGTGMLFILLSVIT---A--VLVTMRNKRATQGTYSPSRQEKDGA-RVEMWNVLKLPPTERLI 'Daphnia_Crb' LVAII-VPIVAALLLIALVGFV---V--FVMMARNKRATRGTYSPSRQEMFSP-RVEMGQVMKPPPEERLI 'Apis_Crb_iso1' IAVIV-GPIVGCLFIIAAGSLV---A--LFMMARKKRATRGTYSPSAQEFSNP-RVEMDNVMKPPPEERLI 'Nasonia_Crb-iso1' IAVIV-GPIVGILFLIAAGSLI---A--LFMMARKKRATRGTYSPSAQEFSNP-RVEMDNVMKPPPEERLI 'Fruitfly_CrbB' IAIIV-IPVVVVLLLIAGALLG---T--FLVMARNKRATRGTYSPSAQEYCNP-RLEMDNVLKPPPEERLI 'AnophelesD_Crb' IALIV-VPVVIGILTIAGALIG---T--FLVMARNKRATRGTYSPSAQEYCNP-RLEMDNVLKPPPEERLI 'Tribolium_Crb' ILYII-IPIVLILSVGIAIGLA---V--LVNVARSKRATRGTYSPSAQEFCNP-RVELDHVLKPPPEERLI 'Saccoglossus_CrbL' -VIII-GAALGGLVFIMLIILL---V--FLFSVRSKRATRGTYSPSRQEMTGS-RVEMGNVLKPPPEERLI 'Urchin_Crb1' WIIIG-ASLAAAVVLIIVIILL--SF--FVCSVRKKRATQGSYSPSRQEMTGS-FVEMDNVLKMPPEERLI 'Aplysia_Crb' -ILIL-VPILGGLLFIALIVGA--IW--LLKSWREKRASHGVYSPSQQESSGS-RVELGNVLKKPPEERLI 'Takifugu_Crb1' -LLSV-SLVSVLLLVALVLTSV------GLAAALGRRATHGTYSPSRQEKEGS-RVEMWSITQTPPRERLI 'Danio_Crb1' LLLSI-SLVCVVLLLVVFGVTT------ALVIALNRRATRGTYSPSRQEKEGS-RVEMWNIVQPPPMERLI 'Gallus_Crb1' VFTSL-GSVTLA-LLILFLAVV------VSVIAANKRSTQGTYSPSRQEKDGA-RVEMWSMVQPPPIERLI 'Caw_Crb1' VFTTI-GSVTLALLLILFLAVV------ASVLASNKRATQGSYSPSRQEKDSS-RVEMWSVMDAPAAERLI 'Opossum_Crb1' IFTAI-GSITLAVLLILFLAVV------ASFIASNKRANQGTYSPSRQEKEGS-RVEMWNMVQPPPMERLI 'Dog_Crb1' VFTTI-GSVTTVLLLILFLAVV------ASVVASNKRATQGTYSPSRQEKEGS-RVEMWSMRPPPALERLI 'Chimpanzee_Crb1' IFTTI-GSVTIALLLILLLAIV------ASVVTSNKRATQGTYSPSRQEKEGS-RVEMWNLMPAPAMERLI 'HUMAN_CRUM1' IFTTI-GSVTVALLLILLLAIV------ASVVTSNKRATQGTYSPSRQEKEGS-RVEMWNLMPPPAMERLI 'Macaca_Crb1' IFTAI-GSVTLALLLILLLAIV------ASVVTSNKRATQGTYSPSRQEKEGS-RVEMWNLMPPPAMERLI 'MOUSE_CRUM1' IFTAV-GSGTLALFFILLLAGV------ASLIASNKRATQGTYSPSGQEKAGP-RVEMWIRMPPPALERLI 'Xenopus_Crb1' VFTAV-ASVVLALFFIVCAGLC------IFIAISGMRSSQGAYSPSRQEKESS-RVEMWNIVQPPPLERLI 'Gallus_Crb2_iso12' LIEVA-VPVACGSLLLLSIGLI---F--MILTARKRRQSEGTYSPSQQEVAGA-RLEMDSVLKVPPEERLI 'Opossum_Crb2' LIEVV-VPVACGCLLLLLIGLL---S--GVLAARKRRQSEGTYSPSQQEVAGA-RLEMDSVLKVPPEERLI 'MOUSE_CRUM2' LLEVA-VPAACACLLLLLLGLL---S--GILAARKRRQSEGTYSPSQQEVAGA-RLEMDSVLKVPPEERLI 'Caw_Crb2' LLEVA-VPAACACLLLLLLGLL---S--GILAARKRRQSEGTYSPSQQEVAGA-RLEMDSVLKVPPEERLI 'HUMAN_CRUM2' LLEVA-VPAACACLLLLLLGLL---S--GILAARKRRQSEGTYSPSQQEVAGA-RLEMDSVLKVPPEERLI 'Chimpanzee_Crb2' LLEVA-VPAACACLLLLLLGLL---S--GILAARKRRQSEGTYSPSQQEVAGA-RLEMDSVLKVPPEERLI 'Macaca_Crb2' LLEVA-VPAACACLLLLLLGLL---S--GILAARKRRQSEGTYSPSQQEVAGA-RLEMDSVLKVPPEERLI 'Danio_Crb2' WLAIA-VPLACGCILLVAIGLI---F--MLMTARKKRQSEGTYSPSHQEVAGA-RLEMDSMLKVPPEERLI 'Takifugu_Crb2' WLVVA-IPLTTLCMLLAILVVF---F--LIMTARKKRQSEGTYSPSSQEVAGA-RLEMGSVLKVPPEERLI 'Xenopus_Crb3' AAIIV-PCVVGGL--ILIGILA---F--IIIKIRERRRTEGTYRPSSEEHKEP-RVEPNMALKLPPEERLI 'MOUSE_CRUM3' VAITV-VFSILGVL-LIAVGLF---L--LMRKLREKRQTEGTYRPSSEEQVGA-RAPPPPNLKLPPEERLI 'C.elegans_CRB3' IAGIV-IAVVIGVLLIGVVGFF------AFKYVKDRRKNHGEYRPQFEEQHHA---KDLPYLQPPNVEGLI 'Macaca_Crb3' TAIIV-VFSILAIL-LLAVGLA---L--LVWKLREKRQTEGTYRPSSEEQVGA-RVPPTPNLKLPPEERLI 'HUMAN_CRUM3' TAIIV-VFSLLAAL-LLAVGLA---L--LVRKLREKRQTEGTYRPSSEEQVGA-RVPPTPNLKLPPEERLI 'Danio_Crb3' VAIVV-PTVVLGLLAILTAVLV---F--LFCVVKKKRQTEGTYRPSAEEQTGARSVEAPDALKLPKEERLI 'Opossum_Crb3' TTIIY-ISSVLCIL-LLATLFL---F--LGQRLLDKRKCSGTYRPSDEEQVGD-CIPRQS-GKEPPKERLI 'C.elegans_CRB1' ISYLF-GPIIAVVIVFAILGCL---L--LFFVIRGNNAMHGHYSPSSHEFTQN-RMAMPTVIKLPPQERLI 'Nematostella_CrbB' -EMII-IGVVVGCVALILLVLL--------IVLLMKRASNGTYSPSKEEFGGG-RVELDSMMKKPNEERLI 'Nematostella_CrbA' DVELG-LSIAFVLVVLIVALVI---L--YFYFRKKAAKESGKYYPSEEEYKGGYPMSPLDFDKLDKEEQLL 'Trichoplax_CrbA' AVAIA-VPILLVIIIIVVAIVI---F--RFYYKPRARKATGKYRPRETEQGSP-----MSTLESEGADRLI 'Trichoplax_CrbB' -VGAT-IGIAMGVTGFILIVII---I--VVYVVIKNRAKQGRFNPSKQEEFG--RFHMADMSKLPPRERLI 'O.lobularis_crb' IAGIV-IGIVVFLILLLLLVLL----------LVRRRQHSGAYSPTETELAIG---NLLAEQERDPPEKLI 'A.queenslandica_crb' LSIII-LAVVVFVLLLFLVVVV-VVV--GLRIVRRKSRRKGFYSPAAVERESE-----GTGGQRTDRERLL 'S.ciliatum_crb' TTTIV-IIVVVVVVVLLILLVL---M--GLYRRKQRGKLSGSYSPSSVEGNGA-DLDDLDV----EEERLI O.minuta ----I-SILSVCLILIAILAILIAVISCYYSCRYWKSRKYNEYSPAETEVYKK-AAGLIDI---ESEETLI A.vastus LIGVV-LLIVITVVLIIALVVLWKYV--------SSYYRYDKYSPAKTEVQKG-SLGLIDI---ESEETLI ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 71; END; BEGIN NOTES; TAXABITS NAME = newlyAddedTaxon on = 1 - 47; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 71; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 71; END; BEGIN TREES[!'Parameters: Tree search criterion: minimize Tree value using character matrix']; Title 'Trees from Mesquite''s heuristic search'; ID 0162d357491333; LINK Taxa = Taxa; TRANSLATE [0] 1 'Xenopus_Crb2', [1] 2 'Daphnia_Crb', [2] 3 'Apis_Crb_iso1', [3] 4 'Nasonia_Crb-iso1', [4] 5 'Fruitfly_CrbB', [5] 6 'AnophelesD_Crb', [6] 7 'Tribolium_Crb', [7] 8 'Saccoglossus_CrbL', [8] 9 'Urchin_Crb1', [9] 10 'Aplysia_Crb', [10] 11 'Takifugu_Crb1', [11] 12 'Danio_Crb1', [12] 13 'Gallus_Crb1', [13] 14 'Caw_Crb1', [14] 15 'Opossum_Crb1', [15] 16 'Dog_Crb1', [16] 17 'Chimpanzee_Crb1', [17] 18 'HUMAN_CRUM1', [18] 19 'Macaca_Crb1', [19] 20 'MOUSE_CRUM1', [20] 21 'Xenopus_Crb1', [21] 22 'Gallus_Crb2_iso12', [22] 23 'Opossum_Crb2', [23] 24 'MOUSE_CRUM2', [24] 25 'Caw_Crb2', [25] 26 'HUMAN_CRUM2', [26] 27 'Chimpanzee_Crb2', [27] 28 'Macaca_Crb2', [28] 29 'Danio_Crb2', [29] 30 'Takifugu_Crb2', [30] 31 'Xenopus_Crb3', [31] 32 'MOUSE_CRUM3', [32] 33 'C.elegans_CRB3', [33] 34 'Macaca_Crb3', [34] 35 'HUMAN_CRUM3', [35] 36 'Danio_Crb3', [36] 37 'Opossum_Crb3', [37] 38 'C.elegans_CRB1', [38] 39 'Nematostella_CrbB', [39] 40 'Nematostella_CrbA', [40] 41 'Trichoplax_CrbA', [41] 42 'Trichoplax_CrbB', [42] 43 'O.lobularis_crb', [43] 44 'A.queenslandica_crb', [44] 45 'S.ciliatum_crb', [45] 46 O.minuta, [46] 47 A.vastus; TREE 'Tree 1 from search (criterion: minimize Tree value using character matrix)' = (((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),((((((25,(26,(27,(28,24)))),23),22),30),29),9)),8),2))),4),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 2 from search (criterion: minimize Tree value using character matrix)' = ((4,3),(((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),((((((25,(26,(27,(28,24)))),23),22),30),29),9)),8),2))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 3 from search (criterion: minimize Tree value using character matrix)' = (4,((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),((((((25,(26,(27,(28,24)))),23),22),30),29),9)),8),2))),3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 4 from search (criterion: minimize Tree value using character matrix)' = (((((38,(((((46,47),44),(39,43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),((((((25,(26,(27,(28,24)))),23),22),30),29),9)),8),2))),4),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 5 from search (criterion: minimize Tree value using character matrix)' = (((((38,(((39,(((47,44),46),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),((((((25,(26,(27,(28,24)))),23),22),30),29),9)),8),2))),4),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 6 from search (criterion: minimize Tree value using character matrix)' = (((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,((((13,(16,(((17,19),18),14))),15),(20,21)),(12,11))),10),((((((25,(26,(27,(28,24)))),23),22),30),29),9)),8),2))),4),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 7 from search (criterion: minimize Tree value using character matrix)' = (((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,((((17,19),18),16),14)),15),(20,21)),11))),10),((((((25,(26,(27,(28,24)))),23),22),30),29),9)),8),2))),4),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 8 from search (criterion: minimize Tree value using character matrix)' = (((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(((17,19),18),(16,14))),15),(20,21)),11))),10),((((((25,(26,(27,(28,24)))),23),22),30),29),9)),8),2))),4),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 9 from search (criterion: minimize Tree value using character matrix)' = (((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((19,18),17),14))),15),(20,21)),11))),10),((((((25,(26,(27,(28,24)))),23),22),30),29),9)),8),2))),4),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 10 from search (criterion: minimize Tree value using character matrix)' = (((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,((19,(17,18)),14))),15),(20,21)),11))),10),((((((25,(26,(27,(28,24)))),23),22),30),29),9)),8),2))),4),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 11 from search (criterion: minimize Tree value using character matrix)' = (((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),(((((((26,25),(27,(28,24))),23),22),30),29),9)),8),2))),4),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 12 from search (criterion: minimize Tree value using character matrix)' = (((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),((((((26,(25,(27,(28,24)))),23),22),30),29),9)),8),2))),4),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 13 from search (criterion: minimize Tree value using character matrix)' = (((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),((((((26,((27,25),(28,24))),23),22),30),29),9)),8),2))),4),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 14 from search (criterion: minimize Tree value using character matrix)' = (((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),((((((26,(27,(25,(28,24)))),23),22),30),29),9)),8),2))),4),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 15 from search (criterion: minimize Tree value using character matrix)' = (((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),((((((26,(27,((28,25),24))),23),22),30),29),9)),8),2))),4),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 16 from search (criterion: minimize Tree value using character matrix)' = (((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),((((((26,(27,(28,(25,24)))),23),22),30),29),9)),8),2))),4),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 17 from search (criterion: minimize Tree value using character matrix)' = (((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),((((((25,((27,26),(28,24))),23),22),30),29),9)),8),2))),4),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 18 from search (criterion: minimize Tree value using character matrix)' = (((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),((((((25,(27,(26,(28,24)))),23),22),30),29),9)),8),2))),4),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 19 from search (criterion: minimize Tree value using character matrix)' = (((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),((((((25,(27,((28,26),24))),23),22),30),29),9)),8),2))),4),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 20 from search (criterion: minimize Tree value using character matrix)' = (((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),((((((25,(27,(28,(26,24)))),23),22),30),29),9)),8),2))),4),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 21 from search (criterion: minimize Tree value using character matrix)' = (((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),(((((((25,(26,(28,24))),27),23),22),30),29),9)),8),2))),4),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 22 from search (criterion: minimize Tree value using character matrix)' = (((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),(((((((25,27),(26,(28,24))),23),22),30),29),9)),8),2))),4),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 23 from search (criterion: minimize Tree value using character matrix)' = (((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),((((((25,(26,((28,27),24))),23),22),30),29),9)),8),2))),4),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 24 from search (criterion: minimize Tree value using character matrix)' = (((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),((((((25,(26,(28,(27,24)))),23),22),30),29),9)),8),2))),4),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 25 from search (criterion: minimize Tree value using character matrix)' = (((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),(((((((25,(26,27)),(28,24)),23),22),30),29),9)),8),2))),4),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 26 from search (criterion: minimize Tree value using character matrix)' = (((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),(((((((25,(28,24)),(26,27)),23),22),30),29),9)),8),2))),4),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 27 from search (criterion: minimize Tree value using character matrix)' = (((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),(((((((25,(26,(27,24))),28),23),22),30),29),9)),8),2))),4),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 28 from search (criterion: minimize Tree value using character matrix)' = (((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),(((((((25,28),(26,(27,24))),23),22),30),29),9)),8),2))),4),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 29 from search (criterion: minimize Tree value using character matrix)' = (((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),((((((25,(28,(26,(27,24)))),23),22),30),29),9)),8),2))),4),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 30 from search (criterion: minimize Tree value using character matrix)' = (((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),((((((25,((26,28),(27,24))),23),22),30),29),9)),8),2))),4),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 31 from search (criterion: minimize Tree value using character matrix)' = (((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),(((((((25,(26,(27,28))),24),23),22),30),29),9)),8),2))),4),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 32 from search (criterion: minimize Tree value using character matrix)' = (((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),(((((((25,24),(26,(27,28))),23),22),30),29),9)),8),2))),4),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 33 from search (criterion: minimize Tree value using character matrix)' = (((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),((((((25,(24,(26,(27,28)))),23),22),30),29),9)),8),2))),4),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 34 from search (criterion: minimize Tree value using character matrix)' = (((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),((((((25,((26,24),(27,28))),23),22),30),29),9)),8),2))),4),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 35 from search (criterion: minimize Tree value using character matrix)' = ((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),(4,3)),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),((((((25,(26,(27,(28,24)))),23),22),30),29),9)),8),2)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 36 from search (criterion: minimize Tree value using character matrix)' = (((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((4,3),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),((((((25,(26,(27,(28,24)))),23),22),30),29),9)),8),2))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 37 from search (criterion: minimize Tree value using character matrix)' = ((4,3),(((38,(((((46,47),44),(39,43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),((((((25,(26,(27,(28,24)))),23),22),30),29),9)),8),2))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 38 from search (criterion: minimize Tree value using character matrix)' = ((4,3),(((38,(((39,(((47,44),46),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),((((((25,(26,(27,(28,24)))),23),22),30),29),9)),8),2))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 39 from search (criterion: minimize Tree value using character matrix)' = ((4,3),(((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,((((13,(16,(((17,19),18),14))),15),(20,21)),(12,11))),10),((((((25,(26,(27,(28,24)))),23),22),30),29),9)),8),2))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 40 from search (criterion: minimize Tree value using character matrix)' = ((4,3),(((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,((((17,19),18),16),14)),15),(20,21)),11))),10),((((((25,(26,(27,(28,24)))),23),22),30),29),9)),8),2))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 41 from search (criterion: minimize Tree value using character matrix)' = ((4,3),(((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(((17,19),18),(16,14))),15),(20,21)),11))),10),((((((25,(26,(27,(28,24)))),23),22),30),29),9)),8),2))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 42 from search (criterion: minimize Tree value using character matrix)' = ((4,3),(((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((19,18),17),14))),15),(20,21)),11))),10),((((((25,(26,(27,(28,24)))),23),22),30),29),9)),8),2))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 43 from search (criterion: minimize Tree value using character matrix)' = ((4,3),(((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,((19,(17,18)),14))),15),(20,21)),11))),10),((((((25,(26,(27,(28,24)))),23),22),30),29),9)),8),2))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 44 from search (criterion: minimize Tree value using character matrix)' = ((4,3),(((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),(((((((26,25),(27,(28,24))),23),22),30),29),9)),8),2))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 45 from search (criterion: minimize Tree value using character matrix)' = ((4,3),(((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),((((((26,(25,(27,(28,24)))),23),22),30),29),9)),8),2))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 46 from search (criterion: minimize Tree value using character matrix)' = ((4,3),(((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),((((((26,((27,25),(28,24))),23),22),30),29),9)),8),2))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 47 from search (criterion: minimize Tree value using character matrix)' = ((4,3),(((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),((((((26,(27,(25,(28,24)))),23),22),30),29),9)),8),2))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 48 from search (criterion: minimize Tree value using character matrix)' = ((4,3),(((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),((((((26,(27,((28,25),24))),23),22),30),29),9)),8),2))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 49 from search (criterion: minimize Tree value using character matrix)' = ((4,3),(((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),((((((26,(27,(28,(25,24)))),23),22),30),29),9)),8),2))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 50 from search (criterion: minimize Tree value using character matrix)' = ((4,3),(((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),((((((25,((27,26),(28,24))),23),22),30),29),9)),8),2))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 51 from search (criterion: minimize Tree value using character matrix)' = ((4,3),(((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),((((((25,(27,(26,(28,24)))),23),22),30),29),9)),8),2))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 52 from search (criterion: minimize Tree value using character matrix)' = ((4,3),(((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),((((((25,(27,((28,26),24))),23),22),30),29),9)),8),2))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 53 from search (criterion: minimize Tree value using character matrix)' = ((4,3),(((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),((((((25,(27,(28,(26,24)))),23),22),30),29),9)),8),2))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 54 from search (criterion: minimize Tree value using character matrix)' = ((4,3),(((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),(((((((25,(26,(28,24))),27),23),22),30),29),9)),8),2))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 55 from search (criterion: minimize Tree value using character matrix)' = ((4,3),(((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),(((((((25,27),(26,(28,24))),23),22),30),29),9)),8),2))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 56 from search (criterion: minimize Tree value using character matrix)' = ((4,3),(((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),((((((25,(26,((28,27),24))),23),22),30),29),9)),8),2))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 57 from search (criterion: minimize Tree value using character matrix)' = ((4,3),(((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),((((((25,(26,(28,(27,24)))),23),22),30),29),9)),8),2))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 58 from search (criterion: minimize Tree value using character matrix)' = ((4,3),(((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),(((((((25,(26,27)),(28,24)),23),22),30),29),9)),8),2))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 59 from search (criterion: minimize Tree value using character matrix)' = ((4,3),(((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),(((((((25,(28,24)),(26,27)),23),22),30),29),9)),8),2))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 60 from search (criterion: minimize Tree value using character matrix)' = ((4,3),(((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),(((((((25,(26,(27,24))),28),23),22),30),29),9)),8),2))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 61 from search (criterion: minimize Tree value using character matrix)' = ((4,3),(((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),(((((((25,28),(26,(27,24))),23),22),30),29),9)),8),2))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 62 from search (criterion: minimize Tree value using character matrix)' = ((4,3),(((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),((((((25,(28,(26,(27,24)))),23),22),30),29),9)),8),2))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 63 from search (criterion: minimize Tree value using character matrix)' = ((4,3),(((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),((((((25,((26,28),(27,24))),23),22),30),29),9)),8),2))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 64 from search (criterion: minimize Tree value using character matrix)' = ((4,3),(((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),(((((((25,(26,(27,28))),24),23),22),30),29),9)),8),2))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 65 from search (criterion: minimize Tree value using character matrix)' = ((4,3),(((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),(((((((25,24),(26,(27,28))),23),22),30),29),9)),8),2))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 66 from search (criterion: minimize Tree value using character matrix)' = ((4,3),(((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),((((((25,(24,(26,(27,28)))),23),22),30),29),9)),8),2))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 67 from search (criterion: minimize Tree value using character matrix)' = ((4,3),(((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),((((((25,((26,24),(27,28))),23),22),30),29),9)),8),2))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 68 from search (criterion: minimize Tree value using character matrix)' = (4,((((38,(((((46,47),44),(39,43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),((((((25,(26,(27,(28,24)))),23),22),30),29),9)),8),2))),3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 69 from search (criterion: minimize Tree value using character matrix)' = (4,((((38,(((39,(((47,44),46),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),((((((25,(26,(27,(28,24)))),23),22),30),29),9)),8),2))),3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 70 from search (criterion: minimize Tree value using character matrix)' = (4,((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,((((13,(16,(((17,19),18),14))),15),(20,21)),(12,11))),10),((((((25,(26,(27,(28,24)))),23),22),30),29),9)),8),2))),3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 71 from search (criterion: minimize Tree value using character matrix)' = (4,((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,((((17,19),18),16),14)),15),(20,21)),11))),10),((((((25,(26,(27,(28,24)))),23),22),30),29),9)),8),2))),3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 72 from search (criterion: minimize Tree value using character matrix)' = (4,((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(((17,19),18),(16,14))),15),(20,21)),11))),10),((((((25,(26,(27,(28,24)))),23),22),30),29),9)),8),2))),3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 73 from search (criterion: minimize Tree value using character matrix)' = (4,((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((19,18),17),14))),15),(20,21)),11))),10),((((((25,(26,(27,(28,24)))),23),22),30),29),9)),8),2))),3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 74 from search (criterion: minimize Tree value using character matrix)' = (4,((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,((19,(17,18)),14))),15),(20,21)),11))),10),((((((25,(26,(27,(28,24)))),23),22),30),29),9)),8),2))),3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 75 from search (criterion: minimize Tree value using character matrix)' = (4,((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),(((((((26,25),(27,(28,24))),23),22),30),29),9)),8),2))),3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 76 from search (criterion: minimize Tree value using character matrix)' = (4,((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),((((((26,(25,(27,(28,24)))),23),22),30),29),9)),8),2))),3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 77 from search (criterion: minimize Tree value using character matrix)' = (4,((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),((((((26,((27,25),(28,24))),23),22),30),29),9)),8),2))),3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 78 from search (criterion: minimize Tree value using character matrix)' = (4,((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),((((((26,(27,(25,(28,24)))),23),22),30),29),9)),8),2))),3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 79 from search (criterion: minimize Tree value using character matrix)' = (4,((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),((((((26,(27,((28,25),24))),23),22),30),29),9)),8),2))),3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 80 from search (criterion: minimize Tree value using character matrix)' = (4,((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),((((((26,(27,(28,(25,24)))),23),22),30),29),9)),8),2))),3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 81 from search (criterion: minimize Tree value using character matrix)' = (4,((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),((((((25,((27,26),(28,24))),23),22),30),29),9)),8),2))),3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 82 from search (criterion: minimize Tree value using character matrix)' = (4,((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),((((((25,(27,(26,(28,24)))),23),22),30),29),9)),8),2))),3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 83 from search (criterion: minimize Tree value using character matrix)' = (4,((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),((((((25,(27,((28,26),24))),23),22),30),29),9)),8),2))),3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 84 from search (criterion: minimize Tree value using character matrix)' = (4,((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),((((((25,(27,(28,(26,24)))),23),22),30),29),9)),8),2))),3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 85 from search (criterion: minimize Tree value using character matrix)' = (4,((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),(((((((25,(26,(28,24))),27),23),22),30),29),9)),8),2))),3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 86 from search (criterion: minimize Tree value using character matrix)' = (4,((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),(((((((25,27),(26,(28,24))),23),22),30),29),9)),8),2))),3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 87 from search (criterion: minimize Tree value using character matrix)' = (4,((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),((((((25,(26,((28,27),24))),23),22),30),29),9)),8),2))),3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 88 from search (criterion: minimize Tree value using character matrix)' = (4,((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),((((((25,(26,(28,(27,24)))),23),22),30),29),9)),8),2))),3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 89 from search (criterion: minimize Tree value using character matrix)' = (4,((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),(((((((25,(26,27)),(28,24)),23),22),30),29),9)),8),2))),3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 90 from search (criterion: minimize Tree value using character matrix)' = (4,((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),(((((((25,(28,24)),(26,27)),23),22),30),29),9)),8),2))),3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 91 from search (criterion: minimize Tree value using character matrix)' = (4,((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),(((((((25,(26,(27,24))),28),23),22),30),29),9)),8),2))),3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 92 from search (criterion: minimize Tree value using character matrix)' = (4,((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),(((((((25,28),(26,(27,24))),23),22),30),29),9)),8),2))),3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 93 from search (criterion: minimize Tree value using character matrix)' = (4,((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),((((((25,(28,(26,(27,24)))),23),22),30),29),9)),8),2))),3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 94 from search (criterion: minimize Tree value using character matrix)' = (4,((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),((((((25,((26,28),(27,24))),23),22),30),29),9)),8),2))),3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 95 from search (criterion: minimize Tree value using character matrix)' = (4,((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),(((((((25,(26,(27,28))),24),23),22),30),29),9)),8),2))),3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 96 from search (criterion: minimize Tree value using character matrix)' = (4,((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),(((((((25,24),(26,(27,28))),23),22),30),29),9)),8),2))),3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 97 from search (criterion: minimize Tree value using character matrix)' = (4,((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),((((((25,(24,(26,(27,28)))),23),22),30),29),9)),8),2))),3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 98 from search (criterion: minimize Tree value using character matrix)' = (4,((((38,(((39,(((46,47),44),43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),((((((25,((26,24),(27,28))),23),22),30),29),9)),8),2))),3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 99 from search (criterion: minimize Tree value using character matrix)' = (((((38,(((((47,44),46),(39,43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,(12,((((13,(16,(((17,19),18),14))),15),(20,21)),11))),10),((((((25,(26,(27,(28,24)))),23),22),30),29),9)),8),2))),4),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 100 from search (criterion: minimize Tree value using character matrix)' = (((((38,(((((46,47),44),(39,43)),42),7)),(36,((31,(41,40)),(33,((37,45),((34,35),32)))))),((6,5),(((((1,((((13,(16,(((17,19),18),14))),15),(20,21)),(12,11))),10),((((((25,(26,(27,(28,24)))),23),22),30),29),9)),8),2))),4),3)[% ] [% ] [% setBetweenBits = selected ]; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1523966522323; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 221038699546641740; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 3440981572809259951; mqVersion 340; checksumv 0 3 1690901413 null getNumChars 71 numChars 71 getNumTaxa 47 numTaxa 47 short false bits 1048575 states 1048575 sumSquaresStatesOnly 2.6875636509566E13 sumSquares 2.6875636509566E13 longCompressibleToShort false usingShortMatrix false NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 201; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1920 962; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #221038699546641740 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 0162d357491333; toggleUseWeights off; endTell; setAssignedID 2971.1523964912870.3173348657084712441; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1719 890; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; toggleShow consensusFrequency; toggleShow bootstrapFrequency; toggleShow posteriorProbability; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; setDigits 4; setThreshold ?; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #3440981572809259951 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1719 890; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 16 6 1 1; subCosts 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;