#NEXUS [written Tue Apr 17 14:11:04 CEST 2018 by Mesquite version 3.40 (build 877) at PC-BORCHIELLINI/172.20.36.92] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=47; TAXLABELS 'H.sapiens_LIN7A' 'M.musculus_LIN7A' 'H.sapiens_LIN7B' 'M.musculus_LIN7B' 'H.sapiens_LIN7C' 'M.musculus_LIN7C' 'B.floridae_LIN' 'N.vectensis_LIN' 'M.leidyi_LIN' 'O.lobularis_LIN' 'O.carmela_LIN' 'T.adhaerens_LIN' 'S.ciliatum_LIN' 'L.complicata_LIN' 'A.queenslandica_LIN' 'O.minuta_LIN' 'A.vastus_LIN' 'H.sapiens_INADL' 'M.musculus_INADL' 'H.sapiens_MPDZ' 'M.musculus_MPDZ' 'N.vectensis_PATJ' 'T.adhaerens_PATJ' 'O.lobularis_MUPP-PATJ' 'A.queenslandica_MUPP-PATJ' 'P.ficiformis_MUPP-PATJ' 'D.melanogaster_INAD' 'H.sapiens_DLG1' 'M.musculus_DLG1' 'B.floridae_DLG' 'D.melanogaster_DLG1' 'O.lobularis_DLG' 'O.carmela_DLG' 'N.vectensis_DLG' 'T.adhaerens_DLG' 'S.ciliatum_DLGa' 'L.complicata_DLGa' 'M.leidyi_DLG' 'A.queenslandica_DLG' 'S.ciliatum_DLGb' 'L.complicata_DLGb' 'O.minuta_DLG' 'A.vastus_DLG' 'S.ciliatum_MPDZ' 'L.complicata_MPDZ' 'A.vastus_MPDZ' 'O.minuta_MPDZ' ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=271; FORMAT DATATYPE = Protein GAP = - MISSING = ?; MATRIX 'H.sapiens_LIN7A' DVARAIELLEKL--QESGE-----------V-PVHKLQSLKKVLQSEFCTAIREVYQYMHETITVNG-----VVELPK--TDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVAERHGGLKRGDQLLSVNGVSVEG--EHHEKAVELLKAAKDSVKLVVR-------------------------------------------------------------------------------------------------------------- 'M.musculus_LIN7A' DVARAIELLEKL--QESGE-----------V-PVHKLQSLKKVLQSEFCTAIREVYQYMHETITVNG-----VVELPK--TDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVAERHGGLKRGDQLLSVNGVSVEG--EHHEKAVELLKAAKDSVKLVVR-------------------------------------------------------------------------------------------------------------- 'H.sapiens_LIN7B' DVSRAVELLERL--QRSGE-----------L-PPQKLQALQRVLQSRFCSAIREVYEQLYDTLDITG-----VVELPK--TDEGLGFNIMGGKEQ-----NSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEG--EQHEKAVELLKAAQGSVKLVVR-------------------------------------------------------------------------------------------------------------- 'M.musculus_LIN7B' DVSRAVELLERL--QRSGE-----------L-PPQKLQALQRVLQSRFCSAIREVYEQLYDTLDITG-----VVELPK--TDEGLGFNIMGGKEQ-----NSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEG--EHHEKAVELLKAAQGSVKLVVR-------------------------------------------------------------------------------------------------------------- 'H.sapiens_LIN7C' DICRAIELLEKL--QRSGE-----------V-PPQKLQALQRVLQSEFCNAVREVYEHVYETVDISS-----VVELPK--TEEGLGFNIMGGKEQ-----NSPIYISRIIPGGIADRHGGLKRGDQLLSVNGVSVEG--EHHEKAVELLKAAQGKVKLVVR-------------------------------------------------------------------------------------------------------------- 'M.musculus_LIN7C' DICRAIELLEKL--QRSGE-----------V-PPQKLQALQRVLQSEFCNAVREVYEHVYETVDISS-----VVELPK--TEEGLGFNIMGGKEQ-----NSPIYISRIIPGGIADRHGGLKRGDQLLSVNGVSVEG--EHHEKAVELLKAAQGKVKLVVR-------------------------------------------------------------------------------------------------------------- 'B.floridae_LIN' DVRRAIELLDNL--QKTGE-----------V-PPQKLQALQKVLQSDFCNAIREVYEHVYETVDLTG-----VVELPK--TEEGLGFNVMGGKEQ-----NSPIYISRVIPSGVADRHGGLKRGDQLLSVNGVSVEG--ENHEKAVELLKAATGTVKLVVR-------------------------------------------------------------------------------------------------------------- 'N.vectensis_LIN' DVNRAVELLQKL--QNNGN-----------I-PPAKLQALQKVLESEFCQAIREVYEHVYETVEIQG-----VVELPK--TDEGLGFNVMGGREQ-----NSPIYISRIIPGGVADRQGGLKRGDQLLSVNGVSVEG--ENHEKAVDLLKEAQGSVRLVVK-------------------------------------------------------------------------------------------------------------- 'M.leidyi_LIN' DIRRAIELMETL--EQSGE-----------I-PASKLAAMKNVLKSDFCRAVREVYEQVHETVDINH-----VIELPK--TEEGLGFNVMGGKEQ-----ASPIYISRIIPGGAAHKDGNLRRGDQLLSVNGQSVEK--ASHETAVDLLKNAQGKVRLVVK-------------------------------------------------------------------------------------------------------------- 'O.lobularis_LIN' DVNRAVELLKIL--QDRGD-----------Q-NNEKLNQLQRILESDFFRAVREVYEHVHDTVDVQG-----VVELPK--TDEGLGFNVMGGLEQ-----KSPVYVSRIIAGGVAARDGKLRRGDILLSVNGISVEG--EPHEKAVDLLKAAKDSVRLVVK-------------------------------------------------------------------------------------------------------------- 'O.carmela_LIN' DVSRAVELLKII--QGRGE-----------L-PNEKLFQLQKILESDFFRAVREVYENVHDTVDIQGR----VIELPQ--TEEGLGFNVMGGLEQ-----SCPVYVSRIIAGGIAAREGKLRRGDMLLSVNGISVEG--QQHEKAVELLKAAKDNVRLVVK-------------------------------------------------------------------------------------------------------------- 'T.adhaerens_LIN' DINRAIQLIDAL--SSHRS-----------I-PSENLQKLKEVLESDFCKTVREVYESVYDTVDINT-----VVELYK--GEEGLGFNVMGGKEQ-----NSQIYVSRIIPNGIADRDGRLQRGDQILSINGASVEN--EYHEKAVNMLKNAQGKISVVVK-------------------------------------------------------------------------------------------------------------- 'S.ciliatum_LIN' DVDRAVELLKKL--QSKGN-----------I-PREKLQKLQAVLESEFFGTVRHVYENVYQTVDAHG-----IVELPK--TDSGLGFNIMGGNDP-----ETPIYVSRIIADGVADRNGGLRRGDELLAVNGVSVEK--MKHEEVVGQLKQSENSVKMIVK-------------------------------------------------------------------------------------------------------------- 'L.complicata_LIN' DVERAIELLRKL--QAKDN-----------M-PREKLLKLQAVLESEFFTTVRQVYENVHATVDAQG-----VVELPK--TDGGLGFNIMGGNDP-----ETPIYVSRIIPDGVADRNGGLRRGDELLAVAGVSVEK--LRHEDVVVLLKKCEHTVKMVVK-------------------------------------------------------------------------------------------------------------- 'A.queenslandica_LIN' DIERIIELLGVLLEKEDTT-----------L-PKEQMGQLRQVLISSFFRQVKEVYENMYQTVETKG-----LVELEK--TAEGFGFNVMGGREQ-----KCPIYISRIIPGGYSDRQGQLRRGDQILSVNGENLEE--AEHSRAVDLLKNAQDSNQI----------------------------------------------------------------------------------------------------------------- 'O.minuta_LIN' DIARAVELINKI--QSKER-----------V-PDDKLQKLKEVLESPFLQTVREVYESIYNSVDHQA-----ELPLQT-SNSEGLGFSVVGGKEL-----QTPVMITKVSTGGLGDRFGHLKRGDQILSINGTNVEQ--ETHENVVNLMKSSRGSIRLVVR-------------------------------------------------------------------------------------------------------------- 'A.vastus_LIN' DIARAVELITKL--QNKER-----------T-PDDKLQKLKEVLESPFLHTVREVYESIYNSVDLPG-----ELPLPT-GSSEGLGISVVGGKEL-----HTPVMITKVSLGGLGDRFGHLKRGDQILSINGINVEQ--ESHENVVSLMKNSRGSIRLVVR-------------------------------------------------------------------------------------------------------------- 'H.sapiens_INADL' DKLQVLQVLDRL--KMKLQ---EKGDTSQN----EKLSMFYETLKSPLFNQILTLQQSIKQLKGQLN-----YIDIER-PSTGGLGFSVVALRSQNL--GKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQN-ISHQQAIALLQQTTGSLRLIVAREP-------EVELIND--GSGLGFGIVGG-------KTSG-VVVRTIVPGGLADRDGRLQTGDHILKI--GGT--NVQGMTSEQVAQVLRNCGN----SVRMLVAR--- 'M.musculus_INADL' EKMQVLQVLDRL--RGKLQ---EKGDTTQN----EKLSAFYETLKSPLFNQILTLQQSIKQLKGQLS-----YIDIER-PSTGGLGFSVVALRSQSL--GLIDIFVKEVHPGSVADRDHRLKENDQILAINDTPLDQN-ISHQQAIALLQQATGSLRLVVAREV-------EVELIND--GSGLGFGIVGG-------KSSG-VVVRTIVPGGLADRDGRLQTGDHILKI--GGT--NVQGMTSEQVAQVLRNCGN----SVRMLVAR--- 'H.sapiens_MPDZ' DKNRALHAAERL--QTKLR---ERGDVANE----DKLSLLKSVLQSPLFSQILSLQTSVQQLKDQVN-----VFELLK-PPSGGLGFSVVGLRSENR--GELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQT-ITHQQAISILQKAKDTVQLVIARGS-------TIELVND--GSGLGFGIIGG-------KATG-VIVKTILPGGVADQHGRLCSGDHILKI--GDT--DLAGMSSEQVAQVLRQCGN----RVKLMIAR--- 'M.musculus_MPDZ' DKNRALQAAERL--QSKLK---ERGDVANE----DKLSLLKSVLQSPLFSQILNLQTSLQQLKDQVN-----IFELLK-PPCGGLGFSVVGLRSENR--GELGIFVQEIQEGSVAHRDGRLKETDQILAINGQVLDQT-ITHQQAISILQKAKDTVQLVIARGS-------TIELVND--GSGLGFGIIGG-------KATG-VIVKTILPGGVADQHGRLCSGDHILKI--GDT--DLAGMSSEQVAQVLRQCGN----RVKLMIAR--- 'N.vectensis_PATJ' ETSRVVQILDGF--QRKLE---SQGDYDNG----EDLERIKAMLKSPLFHQLLAVQQSLRELNTQYH-----TVVLNK-PGQGGLGFSVVGLKSENR--GELGIFIQEIQEEGVAGRDGRLRESDQILSIDGQQLDSG-ISHEEAIVLLQKTRGEVELIVA----------TIDLHND--GTGLGFGIIGG-------RSSG-VSIKTILPGGVADKDGRLQEHDQIMQI--GDV--NVGGMGSEQVAQVLRDAGS----HVRLVIS---- 'T.adhaerens_PATJ' DTSRALAVLSKF--HNKLK---TDGFESHA----QNLSKVRDMLQHPVFGHLLNMQSSMGDMIEK---------------VCGSLGFSVVGLNSESH--GELGIFIQEIFPEGIAAVDRRLQESDQILAINKIRIDSG-IPHHEAIKLLQQASGEIELVIARG-----------------ESGLGCGIIGG-------RNAG-VLVKSILKGLAADRDQRLRSGDQLLQI--DDV--ALKGMSSEQVAGVFKQCTT----TVNLIVSRKS- 'O.lobularis_MUPP-PATJ' DAERALALLEQI--QLWLT---RSGDNDFD----EELNYLIEILASPIFRQLLNIQTSMKALDDELQ-----DVELFK-NPGEGLGFSVVGLKSESR--GELGIFVREVQPGGAAERDGRLERGDQILRINDVDLDHD-VSHQKAIELLQKSRGTVKLRVA---------------------GFGFGIAAN-------KKYGNVYIRSIVENGAAQKDGRLKEGDELVRV--NGT--FVKGLEPVKVREVLYSDGK----TATMIVSR--- 'A.queenslandica_MUPP-PATJ' GSERIINLLGHY--RDRLK---RKGD--YS----EELDYLVGILESPFMREFLEGNMSREDTDHFNE-----TVRLTK--GDRGLGFSLSSQRRGGK---DNKIFIGDLQPGGVAERDGRIMKGDQILHINGQDITS--ISYSTVVALLQQAKGIVELTLL----------IVSLEVD---QDLGFSIIS---------KDGITFVHVITPGSTTEKDGKLMSGDQLLSV--NGE--EVFGLSHSSVLDILQSCKRFPDQPVKLV------ 'P.ficiformis_MUPP-PATJ' DTDRLITLLGQY--RDRLH---TQGDVEHD----EDLSYLMEVLESPLMSEYLSNNTS------------EVIIRLHK--GNQGLGFSINKRKHSKK--GELSIFVQDLQPGGVAEKDGRLKKGDHLVSINGQKLAG--IGLPTAVALLQQAKGSVEIIVL---------AMIELPNE--GQGFGFSVITA-------NNSGVTQVHLIQAGSTAEKDGRLTQGDQLVAI--NNE--TILGVPHSAIVDRLQDISR-KGQPLKLV------ 'D.melanogaster_INAD' DISSALQQIEAV--KKGID---ESDDPKLQMQTAESLSTILGILQDPVFRTIVHVQDSLSELNAQLA-----AIELVN--DGTGLGFGIIGAR-------NSGVIVKTILPGGVADKDGRLRSGDHILQIGDVNLHE--MVSEQVAAVLRQSGTHVRLVVARPV-------QVELKKD--ANGLGITIAGYVCEK--EELSG-IFVKSVSPGSAADLSGRIRVNDRIIEV--DGQ--SLQGYSNHQAVELLKKSGQ----VVNLRLER--- 'H.sapiens_DLG1' DTQRALHLLEEY--RSKLS---QTEDRQLR----SSIERVINIFQSNLFQALIDIQEFYEVTLLDNP-----EITLER--GNSGLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEVDVRD--VTHSKAVEALKEAGSIVRLYVKRR------------------------------------------------------------------------------------------------------------ 'M.musculus_DLG1' DTQRALHLLEEY--RSKLS---QTEDRQLR----SSIERVINIFQSNLFQALIDIQEFYEVTLLDNP-----EITLER--GNSGLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEADVRD--VTHSKAVEALKEAGSIVRLYVKRRK-------EIKLIKG--PKGLGFSIAGGVGNQHIPGDNS-IYVTKIIEGGAAHKDGKLQIGDKLLAV--NSV--CLEEVTHEEAVTALKNTSD----FVYLKVAK--- 'B.floridae_DLG' DAHRALELLEDY--HAKLT---KPGDRQLR----AAIERVIRIFKSRLFQALLDIQEFYEVTLQDGT-----EIVLER--GTQGLGFSIAGGNDNPHIGDDPSIYITKLIPGGAAAADGKLRVNDIIVQVNEADVSD--VTHSLAVDALKKAGSTVRLLVR----------DIELIKG--TKGLGFSIAGGVGKQHIPGDNG-IFVTKIIDGGAAQQDSRLLVGDRLIAV--NGV--TMESVTHEEAVSTLKSTAD----TVMLTIA---- 'D.melanogaster_DLG1' EAHRALELLEDY--HARLS---EPQDRALR----IAIERVIRIFKSRLFQALLDIQEFYELTLLDDS-----DIQLER--GNSGLGFSIAGGTDNPHIGTDTSIYITKLISGGAAAADGRLSINDIIVSVNDVSVVD--VPHASAVDALKKAGNVVKLHVKRKR-------EIDLVKG--GKGLGFSIAGGIGNQHIPGDNG-IYVTKLMDGGAAQVDGRLSIGDKLIAVRTNGSEKNLENVTHELAVATLKSITD----KVTLIIGK--- 'O.lobularis_DLG' DAHRALELLEDY--HAKLT---GTDDRQLR----SAIEKVIRIFRSRLFQALLDIQEFYEETLLDSG-----TIILEK--GSSGLGFSIAGGYDHPHSPDDNLVYVTKIIPTGGAAKDGRLRLDDCILSVNGNELKY--VTHGEAVDALRHAGNRVILLVK----------EIKLVKA--GKGLGFSIAGGVGNQHIPGDNG-IFVTKIIDTGAAAADGRLSVGDRILRV--NEG--SVENVTHEEAVQALKMTDQ----TVILLVE---- 'O.carmela_DLG' DAHRALELLEDY--HAKLT---GSEDRQLR----TAIEKVIRIFRSRLFQALLDIQEFYEETLLDSA-----TIVLDK--GSGGLGFSIAGGYDHPHSPDDNLVYVTKIIPIGGASKDGRLRLEDCILSVNENSLLN--VTHGEAVDALRHAGNRVTLVVK----------KIVLVKA--GKGLGFSIAGGVGNQHIPGDDG-IFVTKIIDTGAAAADGHLSVGDRILKV--NEG--SVENVSHEDAVLALKRTDQ----TVILLVE---- 'N.vectensis_DLG' DADRALQLLESY--HEKLN---KPQDKALR----SAIERVIRIFQSRLFLALLDIQEFYEATLLDGSNYETLEITLER--GGSGLGFSIAGGTDNPHVDDDFGIYITKVIPGGAAAQDGRLQVNDCILSVNGTNTVD--IEHQQAVDALKAAGSQVTLVREKKRGNAPTREEIVLIKG--SKGLGFSIAGGSGNQHVPGDNG-IYITKIIEGGAAQQDGRLQVGDKIISV--NLQ--NLEDVSHEDAVQVLKATKE----RVTIVVSR--- 'T.adhaerens_DLG' ----------------------------------------------------------------------------------SGLGFSIAGGTDNPHFDNDTSIYITKVIPGGAAEADGRLKVYDTIVAVDDQLMED--VAHQVCVDALKSAGSEVKLRVKRF-----------------PKGLGFSIAGGVGNQHIINDNG-IFVTKIIEGGAAFQDGRLEVGDRITKV--NTL--SLENVTHEEAVAILKETAD----VVSLVVVKPR- 'S.ciliatum_DLGa' DAHRALELLEEY--HAQLK---DSNDKPLR----TAIERIIRIFRSRLFQALLDIQDFYDATLMDDD-----VIVLNK-KPGKGLGFSIAGGIDNQHRPNDNRVYCTKVLPNGVAKEDGRLRADDIILQVNDTVLEL--VKHSDAVQALKDSTNTVVLRIR----------VIVLNKK-PGKGLGFSIAGGIDNQHRPNDNR-VYCTKVLPNGVAKEDGRLRADDIILQV--NDT--VLELVKHSDAVQALKDSTN----TVVLRIR---- 'L.complicata_DLGa' DAHRALELLEEY--HAQLK---DPADKPLQ----KAIERIIRIFRSRLFQALLDIQDFYDVTLMDDG-----VIVLNK-RTGRGLGFSIAGGVDNQHRPGDIRVYCTKVLPNGVAMEDGRLRADDIIVQVNDTVMDN--VTHAQAVQSLKDAISTVVLRIR----------IVTLEKK--DRGLGFSIAGGVGNQHIEGDDG-VFVTKIIEGGVAEAEGTLQVNDKLMKV--NDT--VLDHVSHAEAVQALQRAAG----TTYLTIE---- 'M.leidyi_DLG' -----VQLIQDY--KDNLT---YPSDTNLQ----ECMKRVISMCQSELFNALLDIHEYHKDVLLN-----------------NGLGFSISGGNDTPHYPNDSRIYITKIIPNSVSDNDGRLRVNDCLLKVMDKPLDN--VTHDEAVDILKNCPPRVLLTIERK-----------------QKGLGISIAGGKGNQHIPDSDG-IYITKIIPGGAADKDGTLQIGDRILSV--NNI--NIEEVTHDDAVEALKGAGD----NVTLVIAQNM- 'A.queenslandica_DLG' EAYRALELLEQY--CTNLER--QPGSEELQ----ETLRKAIVAIRSRLFQALLDIQEFYEVTLENAA-----TVVIQK-EEGRGLGLSVAGGTDNPHAVGETGIFITRLTPGSPAERSGLLQLGDQLLSVNNVPLVD--VVHNDAVDALRNAGLTVTLRIR----------VITLNKN-GGTSLGFSIAGGKGNQHVLDDNG-IFVTKITKGGVADQDGQLEVGDRVLEV--NGQ--NMVEIDHEDAVAILKATGQ----EVTLKIE---- 'S.ciliatum_DLGb' DAHQALTLLEEY--STHLG----GDKKALQ----SAINRLIRVFRTRLFQALLDIQDFYEDTLLSDE-----TYTLSKDNPRDSFGFGFVGGVDAPIVPNDPHLYVNIVPHSGRAA--AYLKPNDQIASINGFDVGNGVTSHAQAIDLIKDAGLRLVLVIR----------LVTLRKNKATQSLGFSIKGGSDNIYLEGSVG-IFVFRLYENGLAALSKGVSIGDQLISV--NGV--NLENVAHEQAVSTLKNVSD----VAVMFL----- 'L.complicata_DLGb' DAHQALVLLEEY--STNLG----DGNKALQ----SAINRLIRVFRSRLFSALLEIQEFYEGVLMDQD-----SFTLSKDHSGESFGFSLAGGTDRPIKPTDSHLYVGTVPHSGRAA--AYLRPNDLIVSIGGFDVSNGATSQAQAFDIIKDAGLKLVLGIR----------VVILKRQEPTQSLGFSIKGGRDNVFLEGSNG-VFVFRLYDEGLAAVSKGVDIGDQLLEA--SNV--NLEDVRHEEAVAALKVPSD----ETVLILQ---- 'O.minuta_DLG' DAYRVLHLLEEY--RNSLPVSEANDEVALR----LALDNLIAAIRARLFTALSELLEFYNECLLD-------DIVINK--GDSELGISLSAGIGQ-----EQGVLISNIAPGSAADRFEDIRIGDRILEVNRVSFLT--ISQQTAVNTLNSITGDIELVLR--------------------SELGISLSAGIGQ-----EQG-VLISNIAPGSAADRFEDIRIGDRILEV--NRV--SFLTISQQTAVNTLNSITG-D------------- 'A.vastus_DLG' DAYKVLHLLEEY--RDSLQPAVSSQDIALR----LSLDNLIAAIRARLFTALSDLLQFYNGYLLD-------TVSINK--LETELGISVMEGADNVRTKEHPGVYISHIAENSMAAEYEELRVGDRILEVNGVSFLA--IHPTQATDMLLAVRDSICLLLR----------EVELSRA--KGSFGFTIKGGIDNQYFKGQDG-VFLSKLFINGAAEKTGQLSPGDRILSV--NGI--NIEHVRHEDAVKLLSSSGD----RILIKVE---- 'S.ciliatum_MPDZ' EANEHLALLRKL--HSRMV---AANDTNGE----AEIMELIDVFKSATLKELTVPSKIQERNESPAP-------------EIHPLGFGLAAT--------QGGVLVKDVFPGTSDALEGNLVAGDRVVAVGTTVVGKGPDAHKDAVAALQGSTGVIDLWMARR-----------------PDDLGFTIRPG------PDPND-VIVASIAPGGLAYQDGRIQVDDRILEI--NKK--TVTKMSFHQVQQLLNDSGT----DVNVKIARLV- 'L.complicata_MPDZ' DASSHLELLRKL--HGRMV---AANDTEGE----VQIMELMDVFKSSLLEELTSPDKVEARNEAPGP-------------NLRPLGFSIVGTN-------SAGVFVKEIFPGTAAALDGSITRDDRVLAIGNKMLGKTAASHKEAVSLLQQSTGTVELWMARP-----------------PDDLGITLGHG------EREHD-VVVASLTTGAVAHRDGRLEIGDRILEV--NRV--NVTRTGIGEVSDALNKPAP----QVQLKIARMV- 'A.vastus_MPDZ' -------------------------------------------------------------------------ITFGA--SQEAVGLSIKRLEQLEG--ALSGIFIKGIHPNSPASRDGRLKVFDQLLEVNGRPVRQ--YSYEQLKSIFSQRGVSLKLTIH----------YIEMNSE--AREFGFYVGPGCGEY--------SVVNHISPGSTSHEDGRLRIGDEVLRV--NEH--IVRNIASQRVMETIQSFTL-----LRLMVR---- 'O.minuta_MPDZ' -------------------------------------------------------------------------ITFGQ--NPEPVGISIKRLDLSEG----SGIYVIGIQPNSPAARDGRLKVFDELLTVNDTPVRQ--FPYDQLRSIFTHRGITLKLTVY--------------HSD--MRDFGFFVAPGCGEY--------PVINHISPASQSELDNRLRIGDELIQV--NEH--HVRNVASQVVMELIQKNTD-----IKLKVR---- ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 271; END; BEGIN NOTES; TAXABITS NAME = newlyAddedTaxon on = 1 - 47; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 271; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 271; END; BEGIN TREES; Title 'Trees from "tree figure 4.nex"'; ID 0162d34827a032; LINK Taxa = Taxa; TRANSLATE [0] 1 'H.sapiens_LIN7A', [1] 2 'M.musculus_LIN7A', [2] 3 'H.sapiens_LIN7B', [3] 4 'M.musculus_LIN7B', [4] 5 'H.sapiens_LIN7C', [5] 6 'M.musculus_LIN7C', [6] 7 'B.floridae_LIN', [7] 8 'N.vectensis_LIN', [8] 9 'M.leidyi_LIN', [9] 10 'O.lobularis_LIN', [10] 11 'O.carmela_LIN', [11] 12 'T.adhaerens_LIN', [12] 13 'S.ciliatum_LIN', [13] 14 'L.complicata_LIN', [14] 15 'A.queenslandica_LIN', [15] 16 'O.minuta_LIN', [16] 17 'A.vastus_LIN', [17] 18 'H.sapiens_INADL', [18] 19 'M.musculus_INADL', [19] 20 'H.sapiens_MPDZ', [20] 21 'M.musculus_MPDZ', [21] 22 'N.vectensis_PATJ', [22] 23 'T.adhaerens_PATJ', [23] 24 'O.lobularis_MUPP-PATJ', [24] 25 'A.queenslandica_MUPP-PATJ', [25] 26 'P.ficiformis_MUPP-PATJ', [26] 27 'D.melanogaster_INAD', [27] 28 'H.sapiens_DLG1', [28] 29 'M.musculus_DLG1', [29] 30 'B.floridae_DLG', [30] 31 'D.melanogaster_DLG1', [31] 32 'O.lobularis_DLG', [32] 33 'O.carmela_DLG', [33] 34 'N.vectensis_DLG', [34] 35 'T.adhaerens_DLG', [35] 36 'S.ciliatum_DLGa', [36] 37 'L.complicata_DLGa', [37] 38 'M.leidyi_DLG', [38] 39 'A.queenslandica_DLG', [39] 40 'S.ciliatum_DLGb', [40] 41 'L.complicata_DLGb', [41] 42 'O.minuta_DLG', [42] 43 'A.vastus_DLG', [43] 44 'S.ciliatum_MPDZ', [44] 45 'L.complicata_MPDZ', [45] 46 'A.vastus_MPDZ', [46] 47 'O.minuta_MPDZ'; TREE con_50_majrule = 0; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1523967064926; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 5163637768412494873; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 531559439784334904; mqVersion 340; checksumv 0 3 1850049493 null getNumChars 271 numChars 271 getNumTaxa 47 numTaxa 47 short false bits 1048575 states 1048575 sumSquaresStatesOnly 5.6903021917861E13 sumSquares 5.6903021917861E13 longCompressibleToShort false usingShortMatrix false NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 201; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1920 962; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #531559439784334904 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 333; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1719 890; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 16 6 1 1; subCosts 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;