#NEXUS [written Fri Apr 13 10:15:17 CEST 2018 by Mesquite version 3.40 (build 877) at PC-BORCHIELLINI/172.20.36.92] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=17; TAXLABELS Mus_musculus Gallus_gallus Ciona_intestinalis Bos_floridae Drosophila_melanogaster Nematostella_vectensis Trichoplax_adhaerens Oscarella_lobularis 'Oscarella sp.SN-2011' Amphimedon_queenslandica Petrosia_ficiformis Sycon_ciliatum Sycon_coactum Leucosolenia_complicata Oopsacas_minuta Aphrocalites_vastus Mnemiopsis_leidyi ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=70; FORMAT DATATYPE = Protein GAP = - MISSING = ?; MATRIX Mus_musculus ADSD-PTAP--PYDSLLVFDY-EG---SGSEAASLSSLNSSESDQ-----DQDYDYLNEWGNRFKKLADM Gallus_gallus ADTD-PTAP--PYDSLLVFDY-EG---GGSEATSLSSLNSSASDQ-----DQDYDYLNEWGNRFKKLAEL Ciona_intestinalis ADND-PTAP--PFDSLLVFDY-EG---QGSDAGSLSSLNSGTTDA-----SQDYDYLNNWGPRFKKLADM Bos_floridae ADND-PTAP--PHDSIQPYDY-EG---QGSTAGSLSSLTSASSED-----DQDYEYLDNWGPQFRNLADM Drosophila_melanogaster CDRD-VGAT--TVDDVRHYAY-EG---DGNSDGSLSSLASCTDDG-----DLNFDYLSNFGPRFRKLADM Nematostella_vectensis TDRE--VFL--AVDELHIYRY-EG---DDTDVDDLSEIEPDEEDEEY---EQEFDFLKQWGPKFDKLAKL Trichoplax_adhaerens -------------DSVKYYAD-EG---KSTPAGSLSSLEVIEDDEVMEDDQASFSYLNVWGPRFKHLADI Oscarella_lobularis ADNLTRDAF--PSDELVCYSY-EG---CGSFAGSLSSISSSVSIT------------------------- 'Oscarella sp.SN-2011' ADRRTEDWF--PPDELVSYIY-EG---CGSSAGSLSTVFSKQSIR------------------------- Amphimedon_queenslandica ANN---TVQ--DIDSLREYSD-EGI--EINDGGSLSDI-SQVSFE-----LYTFQQLREAGDPFTNVAD- Petrosia_ficiformis ANK---GIY--DLDSLKGYSD-EG----VSSTGSLSTICTNTGYE-----PYTI---------------- Sycon_ciliatum STQESTPV---SSDRAYHYAT-ESE--VDTHDGRLEEDLCPSPPS------RHIADPRSLGNDFANISQL Sycon_coactum NTRHQAAVMAEGTDRPHHYDT-ELE--PEHYAERLGEDLCPGESG-----PRHIDDPRSMGQDFAHISQF Leucosolenia_complicata SGLQSAHIG--AEDQATRYRV-EDEHRADYDDEQLSIDEDCSAQNQ----PADMPDPRTLGGAFANISSL Oopsacas_minuta VILRREAYLC-DDDSKRRYSDSEG---EETLTVSFSRDSEFN-IS-----EVPVETLNELGSPFRKLCKV Aphrocalites_vastus VMLRREAFLC-DDDSNRHFSDSEG---DEILTNSLSRDSELNSLH-----MVSIGTIYELGSPFKQLHDV Mnemiopsis_leidyi VD---------EPNALECQRR-DK---DSGLAGSLNTLCHFDMDC------NNENYLQDWGPKVQNLVHV ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 70; END; BEGIN NOTES; TAXABITS NAME = newlyAddedTaxon on = 1 - 17; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 70; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 70; END; BEGIN TREES[!'Parameters: Tree search criterion: maximimize Tree value using character']; Title 'Trees from Mesquite''s heuristic search'; ID 0162be08ecdb1; LINK Taxa = Taxa; TRANSLATE [0] 1 Mus_musculus, [1] 2 Gallus_gallus, [2] 3 Ciona_intestinalis, [3] 4 Bos_floridae, [4] 5 Drosophila_melanogaster, [5] 6 Nematostella_vectensis, [6] 7 Trichoplax_adhaerens, [7] 8 Oscarella_lobularis, [8] 9 'Oscarella sp.SN-2011', [9] 10 Amphimedon_queenslandica, [10] 11 Petrosia_ficiformis, [11] 12 Sycon_ciliatum, [12] 13 Sycon_coactum, [13] 14 Leucosolenia_complicata, [14] 15 Oopsacas_minuta, [15] 16 Aphrocalites_vastus, [16] 17 Mnemiopsis_leidyi; TREE 'Tree 1 from search (criterion: maximimize Tree value using character)' = (((((((((((((((1,16),2),15),14),13),12),11),10),9),8),7),6),5),4),(17,3)); TREE 'Tree 2 from search (criterion: maximimize Tree value using character)' = ((17,((((((((((((((1,16),2),15),14),13),12),11),10),9),8),7),6),5),4)),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 3 from search (criterion: maximimize Tree value using character)' = (17,(((((((((((((((1,16),2),15),14),13),12),11),10),9),8),7),6),5),4),3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 4 from search (criterion: maximimize Tree value using character)' = ((4,(17,3)),(((((((((((((1,16),2),15),14),13),12),11),10),9),8),7),6),5))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 5 from search (criterion: maximimize Tree value using character)' = (4,((((((((((((((1,16),2),15),14),13),12),11),10),9),8),7),6),5),(17,3)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 6 from search (criterion: maximimize Tree value using character)' = (4,((17,(((((((((((((1,16),2),15),14),13),12),11),10),9),8),7),6),5)),3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 7 from search (criterion: maximimize Tree value using character)' = (4,(17,((((((((((((((1,16),2),15),14),13),12),11),10),9),8),7),6),5),3)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 8 from search (criterion: maximimize Tree value using character)' = (((5,4),(17,3)),((((((((((((1,16),2),15),14),13),12),11),10),9),8),7),6))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 9 from search (criterion: maximimize Tree value using character)' = (((5,4),((((((((((((1,16),2),15),14),13),12),11),10),9),8),7),6)),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 10 from search (criterion: maximimize Tree value using character)' = ((5,(((((((((((((1,16),2),15),14),13),12),11),10),9),8),7),6),4)),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 11 from search (criterion: maximimize Tree value using character)' = ((5,4),(((((((((((((1,16),2),15),14),13),12),11),10),9),8),7),6),(17,3)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 12 from search (criterion: maximimize Tree value using character)' = ((5,4),((17,((((((((((((1,16),2),15),14),13),12),11),10),9),8),7),6)),3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 13 from search (criterion: maximimize Tree value using character)' = ((5,4),(17,(((((((((((((1,16),2),15),14),13),12),11),10),9),8),7),6),3)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 14 from search (criterion: maximimize Tree value using character)' = ((((6,5),4),(17,3)),(((((((((((1,16),2),15),14),13),12),11),10),9),8),7))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 15 from search (criterion: maximimize Tree value using character)' = ((((6,5),4),(((((((((((1,16),2),15),14),13),12),11),10),9),8),7)),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 16 from search (criterion: maximimize Tree value using character)' = ((((6,5),(((((((((((1,16),2),15),14),13),12),11),10),9),8),7)),4),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 17 from search (criterion: maximimize Tree value using character)' = (((6,((((((((((((1,16),2),15),14),13),12),11),10),9),8),7),5)),4),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 18 from search (criterion: maximimize Tree value using character)' = (((6,5),((((((((((((1,16),2),15),14),13),12),11),10),9),8),7),4)),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 19 from search (criterion: maximimize Tree value using character)' = (((6,5),4),((((((((((((1,16),2),15),14),13),12),11),10),9),8),7),(17,3)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 20 from search (criterion: maximimize Tree value using character)' = (((6,5),4),((17,(((((((((((1,16),2),15),14),13),12),11),10),9),8),7)),3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 21 from search (criterion: maximimize Tree value using character)' = (((6,5),4),(17,((((((((((((1,16),2),15),14),13),12),11),10),9),8),7),3)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 22 from search (criterion: maximimize Tree value using character)' = (((((7,6),5),4),(17,3)),((((((((((1,16),2),15),14),13),12),11),10),9),8))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 23 from search (criterion: maximimize Tree value using character)' = (((((7,6),5),4),((((((((((1,16),2),15),14),13),12),11),10),9),8)),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 24 from search (criterion: maximimize Tree value using character)' = (((((7,6),5),((((((((((1,16),2),15),14),13),12),11),10),9),8)),4),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 25 from search (criterion: maximimize Tree value using character)' = (((((7,6),((((((((((1,16),2),15),14),13),12),11),10),9),8)),5),4),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 26 from search (criterion: maximimize Tree value using character)' = ((((7,(((((((((((1,16),2),15),14),13),12),11),10),9),8),6)),5),4),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 27 from search (criterion: maximimize Tree value using character)' = ((((7,6),(((((((((((1,16),2),15),14),13),12),11),10),9),8),5)),4),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 28 from search (criterion: maximimize Tree value using character)' = ((((7,6),5),(((((((((((1,16),2),15),14),13),12),11),10),9),8),4)),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 29 from search (criterion: maximimize Tree value using character)' = ((((7,6),5),4),(((((((((((1,16),2),15),14),13),12),11),10),9),8),(17,3)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 30 from search (criterion: maximimize Tree value using character)' = ((((7,6),5),4),((17,((((((((((1,16),2),15),14),13),12),11),10),9),8)),3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 31 from search (criterion: maximimize Tree value using character)' = ((((7,6),5),4),(17,(((((((((((1,16),2),15),14),13),12),11),10),9),8),3)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 32 from search (criterion: maximimize Tree value using character)' = ((((((8,7),6),5),4),(17,3)),(((((((((1,16),2),15),14),13),12),11),10),9))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 33 from search (criterion: maximimize Tree value using character)' = ((((((8,7),6),5),4),(((((((((1,16),2),15),14),13),12),11),10),9)),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 34 from search (criterion: maximimize Tree value using character)' = ((((((8,7),6),5),(((((((((1,16),2),15),14),13),12),11),10),9)),4),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 35 from search (criterion: maximimize Tree value using character)' = ((((((8,7),6),(((((((((1,16),2),15),14),13),12),11),10),9)),5),4),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 36 from search (criterion: maximimize Tree value using character)' = ((((((8,7),(((((((((1,16),2),15),14),13),12),11),10),9)),6),5),4),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 37 from search (criterion: maximimize Tree value using character)' = (((((8,((((((((((1,16),2),15),14),13),12),11),10),9),7)),6),5),4),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 38 from search (criterion: maximimize Tree value using character)' = (((((8,7),((((((((((1,16),2),15),14),13),12),11),10),9),6)),5),4),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 39 from search (criterion: maximimize Tree value using character)' = (((((8,7),6),((((((((((1,16),2),15),14),13),12),11),10),9),5)),4),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 40 from search (criterion: maximimize Tree value using character)' = (((((8,7),6),5),((((((((((1,16),2),15),14),13),12),11),10),9),4)),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 41 from search (criterion: maximimize Tree value using character)' = (((((8,7),6),5),4),((((((((((1,16),2),15),14),13),12),11),10),9),(17,3)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 42 from search (criterion: maximimize Tree value using character)' = (((((8,7),6),5),4),((17,(((((((((1,16),2),15),14),13),12),11),10),9)),3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 43 from search (criterion: maximimize Tree value using character)' = (((((8,7),6),5),4),(17,((((((((((1,16),2),15),14),13),12),11),10),9),3)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 44 from search (criterion: maximimize Tree value using character)' = (((((((9,8),7),6),5),4),(17,3)),((((((((1,16),2),15),14),13),12),11),10))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 45 from search (criterion: maximimize Tree value using character)' = (((((((9,8),7),6),5),4),((((((((1,16),2),15),14),13),12),11),10)),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 46 from search (criterion: maximimize Tree value using character)' = (((((((9,8),7),6),5),((((((((1,16),2),15),14),13),12),11),10)),4),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 47 from search (criterion: maximimize Tree value using character)' = (((((((9,8),7),6),((((((((1,16),2),15),14),13),12),11),10)),5),4),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 48 from search (criterion: maximimize Tree value using character)' = (((((((9,8),7),((((((((1,16),2),15),14),13),12),11),10)),6),5),4),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 49 from search (criterion: maximimize Tree value using character)' = (((((((9,8),((((((((1,16),2),15),14),13),12),11),10)),7),6),5),4),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 50 from search (criterion: maximimize Tree value using character)' = ((((((9,(((((((((1,16),2),15),14),13),12),11),10),8)),7),6),5),4),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 51 from search (criterion: maximimize Tree value using character)' = ((((((9,8),(((((((((1,16),2),15),14),13),12),11),10),7)),6),5),4),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 52 from search (criterion: maximimize Tree value using character)' = ((((((9,8),7),(((((((((1,16),2),15),14),13),12),11),10),6)),5),4),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 53 from search (criterion: maximimize Tree value using character)' = ((((((9,8),7),6),(((((((((1,16),2),15),14),13),12),11),10),5)),4),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 54 from search (criterion: maximimize Tree value using character)' = ((((((9,8),7),6),5),(((((((((1,16),2),15),14),13),12),11),10),4)),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 55 from search (criterion: maximimize Tree value using character)' = ((((((9,8),7),6),5),4),(((((((((1,16),2),15),14),13),12),11),10),(17,3)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 56 from search (criterion: maximimize Tree value using character)' = ((((((9,8),7),6),5),4),((17,((((((((1,16),2),15),14),13),12),11),10)),3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 57 from search (criterion: maximimize Tree value using character)' = ((((((9,8),7),6),5),4),(17,(((((((((1,16),2),15),14),13),12),11),10),3)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 58 from search (criterion: maximimize Tree value using character)' = ((((((((10,9),8),7),6),5),4),(17,3)),(((((((1,16),2),15),14),13),12),11))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 59 from search (criterion: maximimize Tree value using character)' = ((((((((10,9),8),7),6),5),4),(((((((1,16),2),15),14),13),12),11)),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 60 from search (criterion: maximimize Tree value using character)' = ((((((((10,9),8),7),6),5),(((((((1,16),2),15),14),13),12),11)),4),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 61 from search (criterion: maximimize Tree value using character)' = ((((((((10,9),8),7),6),(((((((1,16),2),15),14),13),12),11)),5),4),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 62 from search (criterion: maximimize Tree value using character)' = ((((((((10,9),8),7),(((((((1,16),2),15),14),13),12),11)),6),5),4),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 63 from search (criterion: maximimize Tree value using character)' = ((((((((10,9),8),(((((((1,16),2),15),14),13),12),11)),7),6),5),4),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 64 from search (criterion: maximimize Tree value using character)' = ((((((((10,9),(((((((1,16),2),15),14),13),12),11)),8),7),6),5),4),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 65 from search (criterion: maximimize Tree value using character)' = (((((((10,((((((((1,16),2),15),14),13),12),11),9)),8),7),6),5),4),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 66 from search (criterion: maximimize Tree value using character)' = (((((((10,9),((((((((1,16),2),15),14),13),12),11),8)),7),6),5),4),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 67 from search (criterion: maximimize Tree value using character)' = (((((((10,9),8),((((((((1,16),2),15),14),13),12),11),7)),6),5),4),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 68 from search (criterion: maximimize Tree value using character)' = (((((((10,9),8),7),((((((((1,16),2),15),14),13),12),11),6)),5),4),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 69 from search (criterion: maximimize Tree value using character)' = (((((((10,9),8),7),6),((((((((1,16),2),15),14),13),12),11),5)),4),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 70 from search (criterion: maximimize Tree value using character)' = (((((((10,9),8),7),6),5),((((((((1,16),2),15),14),13),12),11),4)),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 71 from search (criterion: maximimize Tree value using character)' = (((((((10,9),8),7),6),5),4),((((((((1,16),2),15),14),13),12),11),(17,3)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 72 from search (criterion: maximimize Tree value using character)' = (((((((10,9),8),7),6),5),4),((17,(((((((1,16),2),15),14),13),12),11)),3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 73 from search (criterion: maximimize Tree value using character)' = (((((((10,9),8),7),6),5),4),(17,((((((((1,16),2),15),14),13),12),11),3)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 74 from search (criterion: maximimize Tree value using character)' = (((((((((11,10),9),8),7),6),5),4),(17,3)),((((((1,16),2),15),14),13),12))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 75 from search (criterion: maximimize Tree value using character)' = (((((((((11,10),9),8),7),6),5),4),((((((1,16),2),15),14),13),12)),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 76 from search (criterion: maximimize Tree value using character)' = (((((((((11,10),9),8),7),6),5),((((((1,16),2),15),14),13),12)),4),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 77 from search (criterion: maximimize Tree value using character)' = (((((((((11,10),9),8),7),6),((((((1,16),2),15),14),13),12)),5),4),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 78 from search (criterion: maximimize Tree value using character)' = (((((((((11,10),9),8),7),((((((1,16),2),15),14),13),12)),6),5),4),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 79 from search (criterion: maximimize Tree value using character)' = (((((((((11,10),9),8),((((((1,16),2),15),14),13),12)),7),6),5),4),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 80 from search (criterion: maximimize Tree value using character)' = (((((((((11,10),9),((((((1,16),2),15),14),13),12)),8),7),6),5),4),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 81 from search (criterion: maximimize Tree value using character)' = (((((((((11,10),((((((1,16),2),15),14),13),12)),9),8),7),6),5),4),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 82 from search (criterion: maximimize Tree value using character)' = ((((((((11,(((((((1,16),2),15),14),13),12),10)),9),8),7),6),5),4),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 83 from search (criterion: maximimize Tree value using character)' = ((((((((11,10),(((((((1,16),2),15),14),13),12),9)),8),7),6),5),4),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 84 from search (criterion: maximimize Tree value using character)' = ((((((((11,10),9),(((((((1,16),2),15),14),13),12),8)),7),6),5),4),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 85 from search (criterion: maximimize Tree value using character)' = ((((((((11,10),9),8),(((((((1,16),2),15),14),13),12),7)),6),5),4),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 86 from search (criterion: maximimize Tree value using character)' = ((((((((11,10),9),8),7),(((((((1,16),2),15),14),13),12),6)),5),4),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 87 from search (criterion: maximimize Tree value using character)' = ((((((((11,10),9),8),7),6),(((((((1,16),2),15),14),13),12),5)),4),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 88 from search (criterion: maximimize Tree value using character)' = ((((((((11,10),9),8),7),6),5),(((((((1,16),2),15),14),13),12),4)),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 89 from search (criterion: maximimize Tree value using character)' = ((((((((11,10),9),8),7),6),5),4),(((((((1,16),2),15),14),13),12),(17,3)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 90 from search (criterion: maximimize Tree value using character)' = ((((((((11,10),9),8),7),6),5),4),((17,((((((1,16),2),15),14),13),12)),3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 91 from search (criterion: maximimize Tree value using character)' = ((((((((11,10),9),8),7),6),5),4),(17,(((((((1,16),2),15),14),13),12),3)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 92 from search (criterion: maximimize Tree value using character)' = ((((((((((12,11),10),9),8),7),6),5),4),(17,3)),(((((1,16),2),15),14),13))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 93 from search (criterion: maximimize Tree value using character)' = ((((((((((12,11),10),9),8),7),6),5),4),(((((1,16),2),15),14),13)),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 94 from search (criterion: maximimize Tree value using character)' = ((((((((((12,11),10),9),8),7),6),5),(((((1,16),2),15),14),13)),4),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 95 from search (criterion: maximimize Tree value using character)' = ((((((((((12,11),10),9),8),7),6),(((((1,16),2),15),14),13)),5),4),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 96 from search (criterion: maximimize Tree value using character)' = ((((((((((12,11),10),9),8),7),(((((1,16),2),15),14),13)),6),5),4),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 97 from search (criterion: maximimize Tree value using character)' = ((((((((((12,11),10),9),8),(((((1,16),2),15),14),13)),7),6),5),4),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 98 from search (criterion: maximimize Tree value using character)' = ((((((((((12,11),10),9),(((((1,16),2),15),14),13)),8),7),6),5),4),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 99 from search (criterion: maximimize Tree value using character)' = ((((((((((12,11),10),(((((1,16),2),15),14),13)),9),8),7),6),5),4),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 100 from search (criterion: maximimize Tree value using character)' = ((((((((((12,11),(((((1,16),2),15),14),13)),10),9),8),7),6),5),4),(17,3))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 1 from search (criterion: maximimize Tree value using character)' = (((((((((((((((1,16),2),15),14),13),12),11),10),9),8),7),6),5),4),(17,3)); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1523607317568; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 7605364156419459766; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 2159762042386511700; mqVersion 340; checksumv 0 3 1251587081 null getNumChars 70 numChars 70 getNumTaxa 17 numTaxa 17 short false bits 1048575 states 1048575 sumSquaresStatesOnly 1.3600401158504E13 sumSquares 1.3600401158504E13 longCompressibleToShort false usingShortMatrix false NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 201; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1920 962; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #7605364156419459766 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 0162be08ecdb1; toggleUseWeights off; endTell; setAssignedID 1191.1523606732868.2891511112774065850; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1719 890; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 101; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; toggleShow consensusFrequency; toggleShow bootstrapFrequency; toggleShow posteriorProbability; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; setDigits 4; setThreshold ?; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #2159762042386511700 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1719 890; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 16 6 1 1; subCosts 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;