#NEXUS [written Mon Apr 16 09:38:52 CEST 2018 by Mesquite version 3.40 (build 877) at PC-BORCHIELLINI/172.20.36.92] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=31; TAXLABELS 'M.musculus_Acat' 'B.floridae_Acat' 'D_melanogaster_Acat' 'N.vectensis_Acat' 'T.adhaerens_Acat' 'M.leidyi_Acat' 'O.lobularis_Acat' 'O.carmela_Acat' 'A_queenslandica_Acat' 'P.ficiformis_Acat' 'S.ciliatum_Acat' 'L.complicata_Acat' 'A.vastus_Acat' 'O.minuta_Acat' 'M.musculus_vinc' 'B.floridae_vinc-a' 'B.floridae_vinc-b' 'D.melanogaster_vinc' 'N_vectensis_vinc' 'T.adhaerens_vinc' 'M.leidyi_vinc' 'O.lobularis_vinc' 'O.carmela_vinc' 'A.queenslandica_vinc' 'P.ficiformis_vinc' 'S.ciliatum_vinc-a' 'L.complicata_vinc-a' 'S.ciliatum_vinc-b' 'L.complicata_vinc-b' 'O.minuta_vinc' 'A.vastus_vinc' ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=229; FORMAT DATATYPE = Protein GAP = - MISSING = ?; MATRIX 'M.musculus_Acat' KKAHVLAASVEQATENFLEKGDKIAKE--SQFLKEELVVAVEDVRKQGDLMKS-AAGEFADD-PCSSVKRGN---MVRAARALLSAVTRLLILADMADVYKLLVQLKVVEDGILKLRNA-----GNEQDLGIQYKALKPEVDKLNIMAAKRQQEL----KDVGNRDQMAAARGILQKNVPILYTASQACLQ------HPDVAAYKANRDLIYKQLQQAVTGISNAAQA- 'B.floridae_Acat' KKAHVLSALVKKATETFIDKGEIIAKD--YPDIQDDMMAAIDDCKKTGDTMYA-ASQEFADD-PCSSMKRGA---MVRAARALLSAVTRLLIIADMADVHMLLKHLRIVEESLERVRQA-----QDQQALNNAFRQYGKDVVGLNDIAMKRQNDL----IDPARRDEMAAARNTLKKNSMMLYTASKAFLR------HPDVAAAKANRDYVYKQVCDAVNSLSNTAQA- 'D_melanogaster_Acat' KRASALVAAVEKATENFIQKGEQIAYE--NPDITQEMLTAVDEVKKTGDAMSI-AAREFSED-PCSSLKRGN---MVRAARNLLSAVTRLLILADMVDVHLLLKSLHIVEDDLNKLKNA-----SSQDELMDNMRQFGRNAGELIKQAAKRQQEL----KDPQLRDDLAAARAMLKKHSTMLLTASKVYVR------HPELDLAKVNRDFILKQVCDAVNTISDVAQG- 'N.vectensis_Acat' KNAHKLAQDIEDATVRLIKTGESISKD--FPEIREEMIAACKDCRGAGDTMHI-SSKEFADD-PCTSTKRMT---MVRAARALLSSVTRLLCVADMADVCRLLASLKLVERRLKDLEGA-----SNTADLLNSFKNLGNDLMNLAQLSGRRQADL----KDPLRRDEMAAARAILKDASKMLLSSSKAYVR------HPEVASAKANRDFIISQMNEAVNSISGTAQA- 'T.adhaerens_Acat' KEADDLIKLVHLAINELIEHGQIVAND--NPKIADRVYQAYEELHDAGSCLLA-ATESFVHE-PSSQIKRSA---LLKAVFNLYPILNKLLSIADMVDISNLVKMLHELEDHLQLVLDS-----RDENSLDQNLDNFAYHLDQVDDAVKRRQFDL----KDEDKKDQLSAARANLLTASQLLNVVSKTHFK------YENLPPAKANCAAITSEIREFVNRIVTIIQS- 'M.leidyi_Acat' RKLLQHAKHINEICYELIKFAREVAKE--HPDVEYELNQACNRTCDVYNVMKMKIEGDDKHD------SAGT---IIDIAKQLINNVARILIVTDSADLILINKTIEDVKQCLKAVEQC-----IEFCALDEIFQKLRSVMDTLMKQIASRQMDL----LDTQKKDELGLVRSMWMRCKERLYTSSRVAIV------HPELESGVTNRNLVLQEINESIKKLQAIIKG- 'O.lobularis_Acat' YSLQPFIDQV--ALARFVAEGRKIGRE--NREIEIDMRSACDRVESTGKEMHA-TARDFLDN-PCSSARRNE---LVESARELLTAVTDLLIIADAADVIRLKSAARQVDNWLQQMERA-----ASPDEVTYLYRGYGNDLEKLLKLTARRQTDV----KSPSISEKLALARLKLKRINNVLLNSMTLHVK------YPDVASAKVNRDFALSQASEAVRSIVESLDE- 'O.carmela_Acat' YRSATLVDSLDKARKCFVAEGRKIAQL--NREVEREMLIACEGVESAGLATRD-AAEHFMLD-PCSSEKRSE---LVEVAKELLTSVARLLLIADTADVNHLKSAARSVNTWLYKLERA-----ISPEEVVQLYQGYAIDLENLLKLTTRRQMDV----KSRWVSEKLAFAKVKLRRMGDILSRSVKLHVQ------YPDIASAKVNRDFTLSEATQAVRSITECLDE- 'A_queenslandica_Acat' ----------------------------------------------------------------------------------------------------------------------------------------------------------MK----GNAAQQLLVAAHTELKQCNKILITSTKIFLE------HPEDPHAQENRDYVIQRMQEAVKTISMLADG- 'P.ficiformis_Acat' RNIYKLIQIVDKATENFNAVAENIATE--NPEFQEELWLSIEEVHTAGNLLHE-AAFDYTSD-VLAPRKREG---MEQAAAGLLKAVTRLLVLIDLIDINELFKASNRVDVKLRQIRDV-----NNWDDFVHSMKVVAKEIQHVSEMAIARQKEL----KNSTAKQLLVAAYVDLTQYNRMLITSTKAFLQ------HPEDESAIENRDYIITRMSEVLKTIAQLADG- 'S.ciliatum_Acat' QHILSVLSKLQRAVPQIPVDNDVGLTAGVRHRIGINYDSAMEHAEELVTCLRQPGPGTAGNSIAVDPAARA--------SQALLTSVTCALYEYDQTIVNRIEMSGQQIARLGEELSSLLMTSTVPSDRLQDVLKSLSETVVVFAQLTEARCKDL----KDPCQKSDMEASRITMEHCFRTLMSSIKVMLQ------HTSLSICRMNCLAVNDNFMDTAALMK--LAA- 'L.complicata_Acat' QRIQTVLADLQRKAALIERNDDLGITAAVRHRIIMDYDSAVEHADDIVAQLTQ-STTGAADILAVDKIGRS--------AQGILSSVTSALFAFDQTVIIRIEAIAAKISENGTSLTRILEASPVHVDSLQDSLKQLSDHMVKLSEITRGRIQDL----KDGCQRNEMDCCRVMLEHCFRSFLSAVKVRLQ------HSVLSIGRMNCMAVMDNFLEVVGTITRAAAL- 'A.vastus_Acat' ------------------------------------MLSAVHRLKGSARQLRERVVGSSLLN-SCENENPGQDVTVREVSRALLYDVASVLSVADKLDGKRLVETSLSVENCLEKLKHA-----LSLQELYQHIRQFTPVMAGLTKLARQRQEELACCEENSCLVESLSWYRRELAMGCALLIPSCKCYVK------HPDLQTSRSTRDFALEVILDAANYISRIAKE- 'O.minuta_Acat' ISVSLLLQSLDQAVSSLVHTAEIIAYE-NDKKVRRKMLNAVNRLKTSAKQLSQLMSDNIPPS-PTHCIDTEKSPSLRDVARVLLYDVACVLSVADKVDERKLQEATQSIESCLDSLRDV-----VSLTELYQQITQFTPVMARLAKLAKQRQNELDCCEDNSCLVESLSWHRRVLTIGCAMLISSCKCYVR------HPDIETARINRDFSFDVILESSNIIARIMGD- 'M.musculus_vinc' PDLTAPVAAVQAAVSNLVRVGKETVQTTEDQILKRDMPPAFIKVENACTKLVQ-AAQMLQSD-PYSVPARDY---LIDGSRGILSGTSDLLLTFDEAEVRKIIRVCKGILEYLTVAEVV-----ETMEDLVTYTKNLGPGMTKMAKMIDERQQEL----THQEHRVMLVNSMNTVKELLPVLISAMKIFVTTKNSK-NQGIEEALKNRNFTVEKMSAEINEIIRVLQL- 'B.floridae_vinc-a' PDLARPVQAVCAAVQNLVKVAKETAETSQDVILKQEMPIAYTRVEEASHLLVD-ASDMLRAD-PYSRPAREK---LIDGARGILSGTSQLLLTFDEAEVRKIIRVCKSVLEYLAIAEVV-----ETMEDLVTFVKNLTPGMTGMSKMVDARSKEL----THQQHRESLAHSLQVVKDLTPVLISGIKIFVTTRRPQ-GLGIPEAIENRNYVVNKMSAEISEIIRVLQL- 'B.floridae_vinc-b' PDLARPVQAVCAAVQNLVKVAKETAETSQDVILKQEMPIAYTRVEEASHLLVD-ASDMLRAD-PYSRPAREK---LIDGARGILSGTSQLLLTFDEAEVRKIIRVCKSVLEYLAIAEVV-----ETMEDLVTFVKNLTPGMTGMSKMVDARSKEL----THQQHRESLAHSLQVVKDLTPVLISGIKIFVTTRRPQDGKGIPEAIENRNYVVNKMSAEISEIIRVLQL- 'D.melanogaster_vinc' PDLSRPVQVVSAAVANLVKVGRDTINSSDDKILRQDMPSALHRVEGASQLLEE-ASDMLRSD-PYSGPARKK---LIEGSRGILQGTSSLLLCFDESEVRKIIQECKRVLDYLAVAEVI-----NTMEQLVQFLKDLSPCLSKVHREVGAREKEL----THQVHSEILVRCLEQVKTLAPILICSMKVYIHIVEQQ-GRGAEEAAENRNYLAARMSDELQEIIRVLQL- 'N_vectensis_vinc' PDLSNPIMAVGAAVANLVKVGKETATQSKDKILKQEMPLAFTRVEESSMLLVQ-ASKLLKRD-PYSSEARQK---LIDGARGILSGTSALLLTFDEAEVRKIVTFCRSLLEYLPVGEMV-----EEMQDLLTFVANLSPAIQNVAKAVESRAAEL----THTVHRDMLKSSLSKLSGMVPLLISSMKAFVKTPP---GAGRPEAQESRNFIINKMSAEITEIIRVLQL- 'T.adhaerens_vinc' PDITMPVQAACAAVANLVQVGQDTANASSDEKFKQEMNVALEVVKNSSVNLNQ-AAHLLKDG-SSSLEARNI---LIDGTKGILSGTSDLLFSYDESEVKKIVRVCNNVKDYMPNASVI-----THEADYQTYTKSVKSAVDNLLIRIRARADDL----LIELNRQLLKRSCINIEDAVTSIESVLKAIIDD-----NQEAEPLQNSRDSFVGIVCEELEEIIRVLML- 'M.leidyi_vinc' PDLVDNIKLVLTCVSNLATVAESTAQQSNDATFIRDFPSAMDAVNSSSAALNE-AVLELRTD-PYSSQGRRK---LITGAKGILTGTCDLLLMYDESEVRKIVKNCEAVKSYFPVCLEV-----GTLEDLSFYIKNLTPGLTQVCKAVQNRAQEL----LHKPYADILRRETEQLKKFAPMLIGASKSLINAQN---EELTNAAHQNLDNTIEKMNASMKEIIRVLLM- 'O.lobularis_vinc' QDLTPLVKGVGLAVSNLVEVATGMVSTTNDEEFKVELPPSVEMVKQASTDLDD-AARLLKAD-QGSREGKRK---LLDGARGVINGMSDLLVCADRSEVRKMIKTCRNVQEYLDVAKVI-----DVEADLATFLQNLTPGMTSMMKVVESRHPEL----TNLRHALMLKDELRTVREQIPILISSIKVYCLVFAKKGATGLKEAGFGRDHVITKLYVSIEEIIRVLQL- 'O.carmela_vinc' EDLTPLVQGVGIAVTNLVQVAASMVETSNDEDFKAELPPSMQEVQQAAVFLSD-AARLLKAD-QGSPEGKRK---LLDGARGVINGMSDLLMCADRSEVRKMVKVCRSVQEYLDVAKVI-----DVEADLATFLQNLTPGMTSMMKVVEQRHPEL----TNLAHAQMLKSELGTVREQIPILISSIRVCCLVIVKDGSSGMKDAAFGRDYVIQKLFIAIEEIIRVLQL- 'A.queenslandica_vinc' SDLVQPVTAVKAAVDNLVEVGRQTLKSAKDEKVHTDMPPTFEAIESACTLLLQ-AAKGLSQE-EQTPTDKKK---LLDGSRGILQGVSHLLLVYDQYEVRKIIKTCEGVIDYIKVAEIV-----QSMEELLQFTKNLSPAITNMTKQVDGRREDL----TNASHAAILEDESEQVKKGLPLLLSAMKAFVTIKRDG-RKGAEDAQENRNYIVGAITDSIREIIRVLQL- 'P.ficiformis_vinc' -----------------------------------------------------------------------------------------------------MVKMCEGIIEYIKVSEMV-----ESIEDVITFTENLAPNLTSMVKLVDTRREEL----TNASHSAILEDELNQVRKGLPLLLSALKTLVGLKKTK-SEGILDAQENRDFIVGSLTESIIEIIRVLQL- 'S.ciliatum_vinc-a' PDLSEPVSAVSAAVGKLVTVGKETAESSEDKQLQQDLPRAWEAAEVSSTQLAE-AAATLRDN-PRSGPGRRL---LISGARGILEAVSDLLLTFDESEVRRIISVCESVQEYVKVADVI-----EIMSDLVIFIKNLTPGLTGLNKLIDNRAKEL----TNPVHAAKLVEHCSNVKKAVPMLIASVKLVCSLRASQ-SGDATDAASSRSWLMSTINEDLNEIIRILQI- 'L.complicata_vinc-a' PDLSEPVSAVSAAVGTLVKVGKETAESSNDEQLQQDLPRAWESAELASQQLTE-AAQTLRDN-PRSAPGRRL---LISGARGILEAVSDLLLTFDEAEVRRIIMVCESVKEYLSVADVI-----EIMDDLVTFIKNLTPGATGLNKLIDNRAKEL----TNPVHAAKLVEHCDHVKKSIPMLISSIKLVCSLKASR-SGDVSEAASSRNWLVGTMNEDLDEIIRILKI- 'S.ciliatum_vinc-b' PDLTPQVDVVAAAVTTLVTVGEQTADDSEDPILKKELPRPLKSVQKSADQLVE-AAQTLKEN-PVSLPGRRL---LIVGARGILQGISDLLITNDESEVRTMVAACRGSQTVLRDAHIV-----RGIPNLIEFIKGLTPSLTETSKHVDRRQKEL----TNATHAAELVDHCDHLRKFVPMLISSIKLVSHLEARG-GARSREANDNRDFVVKSMNEHIEEIIRILQL- 'L.complicata_vinc-b' PDLTPQVDVVAAAVMTLVKVGEQTADDSDDQILKKELPRSLKSVEKASSQLVE-ASQTLKEN-GKSMPGRRL---LIVGARGILQGISDLLITNDESEVRTMVVACRDSQVVLRDAAGV-----RGMPNLVEFVKRLTPSLTETSKHVDRRQKEL----TNASHAAELVEHCDHLRKFVPMLISSIKLVSHLEHRG-AASTKDAVENRDYVTRAMNEHIEEIIRILQL- 'O.minuta_vinc' -NIGLHLKEVTAAVENLLQVGQNLSATSKDEILKKELPSAGDKIEQSCTLVNQ-AARAFEPGSQGNIEDKHL---MLDGARGILSGVSTLLLVWDESEIRKVLGICARIIEYLSVVEQV-----ETYEEVATVSSNLQPGMNSLVNHVRARADDL----IEKNLEDMLNSEVRNTEKYHSVLISSMQMYVSVRSSPKLEGLLDAQRGRNCTQGMLVGSIQEIKRIILL- 'A.vastus_vinc' -NIGLHLKEVTAAVENLLQVGQNLSETSKDELLKKELPVAGEKIEQSCLLVNK-AAKAFEPGAQGEVEDKHL---MLDGARGILSGVSMLLLVWDESEIRKVLDICDRIVEYLSVVEQV-----ETHEEVATVSSNLQPGMNSLVNHVRARADDL----IDKTLQGMLNEEVQNTERYQSVLMSCMQMYVSVRGSQGPQGLLDAQRGRNAAQRTLVDSINELKRILQL- ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 229; END; BEGIN NOTES; TAXABITS NAME = newlyAddedTaxon on = 1 - 31; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 229; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 229; END; BEGIN TREES[!'Parameters: Tree search criterion: minimize Tree value using character matrix']; Title 'Trees from Mesquite''s heuristic search'; ID 0162cd5a42e71; LINK Taxa = Taxa; TRANSLATE [0] 1 'M.musculus_Acat', [1] 2 'B.floridae_Acat', [2] 3 'D_melanogaster_Acat', [3] 4 'N.vectensis_Acat', [4] 5 'T.adhaerens_Acat', [5] 6 'M.leidyi_Acat', [6] 7 'O.lobularis_Acat', [7] 8 'O.carmela_Acat', [8] 9 'A_queenslandica_Acat', [9] 10 'P.ficiformis_Acat', [10] 11 'S.ciliatum_Acat', [11] 12 'L.complicata_Acat', [12] 13 'A.vastus_Acat', [13] 14 'O.minuta_Acat', [14] 15 'M.musculus_vinc', [15] 16 'B.floridae_vinc-a', [16] 17 'B.floridae_vinc-b', [17] 18 'D.melanogaster_vinc', [18] 19 'N_vectensis_vinc', [19] 20 'T.adhaerens_vinc', [20] 21 'M.leidyi_vinc', [21] 22 'O.lobularis_vinc', [22] 23 'O.carmela_vinc', [23] 24 'A.queenslandica_vinc', [24] 25 'P.ficiformis_vinc', [25] 26 'S.ciliatum_vinc-a', [26] 27 'L.complicata_vinc-a', [27] 28 'S.ciliatum_vinc-b', [28] 29 'L.complicata_vinc-b', [29] 30 'O.minuta_vinc', [30] 31 'A.vastus_vinc'; TREE 'Tree 1 from search (criterion: minimize Tree value using character matrix)' = (((1,2),3),(4,(((((14,13),(((((((18,15),(17,16)),19),((((24,25),(22,23)),((28,29),(27,26))),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 2 from search (criterion: minimize Tree value using character matrix)' = ((4,((1,2),3)),(((((14,13),(((((((18,15),(17,16)),19),((((24,25),(22,23)),((28,29),(27,26))),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 3 from search (criterion: minimize Tree value using character matrix)' = (4,(((1,2),3),(((((14,13),(((((((18,15),(17,16)),19),((((24,25),(22,23)),((28,29),(27,26))),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 4 from search (criterion: minimize Tree value using character matrix)' = ((3,(4,(((((14,13),(((((((18,15),(17,16)),19),((((24,25),(22,23)),((28,29),(27,26))),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5)))),(1,2))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 5 from search (criterion: minimize Tree value using character matrix)' = (3,((1,2),(4,(((((14,13),(((((((18,15),(17,16)),19),((((24,25),(22,23)),((28,29),(27,26))),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5)))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 6 from search (criterion: minimize Tree value using character matrix)' = (((2,3),(4,(((((14,13),(((((((18,15),(17,16)),19),((((24,25),(22,23)),((28,29),(27,26))),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5)))),1)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 7 from search (criterion: minimize Tree value using character matrix)' = (((2,3),1),(4,(((((14,13),(((((((18,15),(17,16)),19),((((24,25),(22,23)),((28,29),(27,26))),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 8 from search (criterion: minimize Tree value using character matrix)' = ((2,3),(1,(4,(((((14,13),(((((((18,15),(17,16)),19),((((24,25),(22,23)),((28,29),(27,26))),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5)))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 9 from search (criterion: minimize Tree value using character matrix)' = (((1,(4,(((((14,13),(((((((18,15),(17,16)),19),((((24,25),(22,23)),((28,29),(27,26))),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5)))),2),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 10 from search (criterion: minimize Tree value using character matrix)' = (((1,2),3),(4,(((((14,13),(((((((15,(17,16)),18),19),((((24,25),(22,23)),((28,29),(27,26))),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 11 from search (criterion: minimize Tree value using character matrix)' = (((1,2),3),(4,(((((14,13),(((((((18,15),(17,16)),19),((((22,23),((28,29),(27,26))),(24,25)),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 12 from search (criterion: minimize Tree value using character matrix)' = ((((((14,13),(((((((18,15),(17,16)),19),((((24,25),(22,23)),((28,29),(27,26))),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(4,((1,2),3))),(6,5))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 13 from search (criterion: minimize Tree value using character matrix)' = (((((14,13),(((((((18,15),(17,16)),19),((((24,25),(22,23)),((28,29),(27,26))),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),((4,((1,2),3)),(6,5)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 14 from search (criterion: minimize Tree value using character matrix)' = ((4,(1,(2,3))),(((((14,13),(((((((18,15),(17,16)),19),((((24,25),(22,23)),((28,29),(27,26))),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 15 from search (criterion: minimize Tree value using character matrix)' = ((4,((1,2),3)),(((((14,13),(((((((15,(17,16)),18),19),((((24,25),(22,23)),((28,29),(27,26))),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 16 from search (criterion: minimize Tree value using character matrix)' = ((4,((1,2),3)),(((((14,13),(((((((18,15),(17,16)),19),((((22,23),((28,29),(27,26))),(24,25)),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 17 from search (criterion: minimize Tree value using character matrix)' = (4,(((2,3),1),(((((14,13),(((((((18,15),(17,16)),19),((((24,25),(22,23)),((28,29),(27,26))),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 18 from search (criterion: minimize Tree value using character matrix)' = (4,(((1,2),3),(((((14,13),(((((((15,(17,16)),18),19),((((24,25),(22,23)),((28,29),(27,26))),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 19 from search (criterion: minimize Tree value using character matrix)' = (4,(((1,2),3),(((((14,13),(((((((18,15),(17,16)),19),((((22,23),((28,29),(27,26))),(24,25)),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 20 from search (criterion: minimize Tree value using character matrix)' = ((1,(3,(4,(((((14,13),(((((((18,15),(17,16)),19),((((24,25),(22,23)),((28,29),(27,26))),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5))))),2)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 21 from search (criterion: minimize Tree value using character matrix)' = (1,((3,(4,(((((14,13),(((((((18,15),(17,16)),19),((((24,25),(22,23)),((28,29),(27,26))),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5)))),2))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 22 from search (criterion: minimize Tree value using character matrix)' = ((3,(4,(((((14,13),(((((((15,(17,16)),18),19),((((24,25),(22,23)),((28,29),(27,26))),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5)))),(1,2))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 23 from search (criterion: minimize Tree value using character matrix)' = ((3,(4,(((((14,13),(((((((18,15),(17,16)),19),((((22,23),((28,29),(27,26))),(24,25)),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5)))),(1,2))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 24 from search (criterion: minimize Tree value using character matrix)' = ((3,(1,(4,(((((14,13),(((((((18,15),(17,16)),19),((((24,25),(22,23)),((28,29),(27,26))),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5))))),2)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 25 from search (criterion: minimize Tree value using character matrix)' = (3,((1,2),(4,(((((14,13),(((((((15,(17,16)),18),19),((((24,25),(22,23)),((28,29),(27,26))),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5)))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 26 from search (criterion: minimize Tree value using character matrix)' = (3,((1,2),(4,(((((14,13),(((((((18,15),(17,16)),19),((((22,23),((28,29),(27,26))),(24,25)),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5)))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 27 from search (criterion: minimize Tree value using character matrix)' = (((2,3),(4,(((((14,13),(((((((15,(17,16)),18),19),((((24,25),(22,23)),((28,29),(27,26))),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5)))),1)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 28 from search (criterion: minimize Tree value using character matrix)' = (((2,3),(4,(((((14,13),(((((((18,15),(17,16)),19),((((22,23),((28,29),(27,26))),(24,25)),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5)))),1)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 29 from search (criterion: minimize Tree value using character matrix)' = (((2,3),1),(4,(((((14,13),(((((((15,(17,16)),18),19),((((24,25),(22,23)),((28,29),(27,26))),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 30 from search (criterion: minimize Tree value using character matrix)' = (((2,3),1),(4,(((((14,13),(((((((18,15),(17,16)),19),((((22,23),((28,29),(27,26))),(24,25)),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 31 from search (criterion: minimize Tree value using character matrix)' = ((2,3),(1,(4,(((((14,13),(((((((15,(17,16)),18),19),((((24,25),(22,23)),((28,29),(27,26))),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5)))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 32 from search (criterion: minimize Tree value using character matrix)' = ((2,3),(1,(4,(((((14,13),(((((((18,15),(17,16)),19),((((22,23),((28,29),(27,26))),(24,25)),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5)))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 33 from search (criterion: minimize Tree value using character matrix)' = (((1,(4,(((((14,13),(((((((15,(17,16)),18),19),((((24,25),(22,23)),((28,29),(27,26))),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5)))),2),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 34 from search (criterion: minimize Tree value using character matrix)' = (((1,(4,(((((14,13),(((((((18,15),(17,16)),19),((((22,23),((28,29),(27,26))),(24,25)),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5)))),2),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 35 from search (criterion: minimize Tree value using character matrix)' = (((1,2),3),(4,(((((14,13),(((((((15,(17,16)),18),19),((((22,23),((28,29),(27,26))),(24,25)),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 36 from search (criterion: minimize Tree value using character matrix)' = (3,((4,(1,2)),(((((14,13),(((((((18,15),(17,16)),19),((((22,23),((28,29),(27,26))),(24,25)),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 37 from search (criterion: minimize Tree value using character matrix)' = ((1,2),(4,(3,(((((14,13),(((((((18,15),(17,16)),19),((((22,23),((28,29),(27,26))),(24,25)),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5)))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 38 from search (criterion: minimize Tree value using character matrix)' = ((((1,2),4),3),(((((14,13),(((((((18,15),(17,16)),19),((((22,23),((28,29),(27,26))),(24,25)),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 39 from search (criterion: minimize Tree value using character matrix)' = (((1,2),((((((14,13),(((((((18,15),(17,16)),19),((((22,23),((28,29),(27,26))),(24,25)),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5)),3)),4)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 40 from search (criterion: minimize Tree value using character matrix)' = ((6,(((((14,13),(((((((18,15),(17,16)),19),((((24,25),(22,23)),((28,29),(27,26))),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(4,((1,2),3)))),5)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 41 from search (criterion: minimize Tree value using character matrix)' = (6,((((((14,13),(((((((18,15),(17,16)),19),((((24,25),(22,23)),((28,29),(27,26))),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(4,((1,2),3))),5))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 42 from search (criterion: minimize Tree value using character matrix)' = ((((((14,13),(((((((15,(17,16)),18),19),((((24,25),(22,23)),((28,29),(27,26))),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(4,((1,2),3))),(6,5))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 43 from search (criterion: minimize Tree value using character matrix)' = ((((((14,13),(((((((18,15),(17,16)),19),((((22,23),((28,29),(27,26))),(24,25)),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(4,((1,2),3))),(6,5))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 44 from search (criterion: minimize Tree value using character matrix)' = ((((((14,13),(((((((18,15),(17,16)),19),((((24,25),(22,23)),((28,29),(27,26))),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(4,(1,(2,3)))),(6,5))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 45 from search (criterion: minimize Tree value using character matrix)' = (((10,9),((4,((1,2),3)),(6,5))),(((14,13),(((((((18,15),(17,16)),19),((((24,25),(22,23)),((28,29),(27,26))),21)),20),(31,30)),(12,11))),(7,8)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 46 from search (criterion: minimize Tree value using character matrix)' = ((10,9),((((14,13),(((((((18,15),(17,16)),19),((((24,25),(22,23)),((28,29),(27,26))),21)),20),(31,30)),(12,11))),(7,8)),((4,((1,2),3)),(6,5))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 47 from search (criterion: minimize Tree value using character matrix)' = (((((14,13),(((((((15,(17,16)),18),19),((((24,25),(22,23)),((28,29),(27,26))),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),((4,((1,2),3)),(6,5)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 48 from search (criterion: minimize Tree value using character matrix)' = (((((14,13),(((((((18,15),(17,16)),19),((((22,23),((28,29),(27,26))),(24,25)),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),((4,((1,2),3)),(6,5)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 49 from search (criterion: minimize Tree value using character matrix)' = (((((14,13),(((((((18,15),(17,16)),19),((((24,25),(22,23)),((28,29),(27,26))),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),((4,(1,(2,3))),(6,5)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 50 from search (criterion: minimize Tree value using character matrix)' = ((4,(1,(2,3))),(((((14,13),(((((((15,(17,16)),18),19),((((24,25),(22,23)),((28,29),(27,26))),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 51 from search (criterion: minimize Tree value using character matrix)' = ((4,(1,(2,3))),(((((14,13),(((((((18,15),(17,16)),19),((((22,23),((28,29),(27,26))),(24,25)),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 52 from search (criterion: minimize Tree value using character matrix)' = ((4,((1,2),3)),(((((14,13),(((((((15,(17,16)),18),19),((((22,23),((28,29),(27,26))),(24,25)),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 53 from search (criterion: minimize Tree value using character matrix)' = ((4,(1,2)),(3,(((((14,13),(((((((18,15),(17,16)),19),((((22,23),((28,29),(27,26))),(24,25)),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 54 from search (criterion: minimize Tree value using character matrix)' = (4,(((2,3),1),(((((14,13),(((((((15,(17,16)),18),19),((((24,25),(22,23)),((28,29),(27,26))),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 55 from search (criterion: minimize Tree value using character matrix)' = (4,(((2,3),1),(((((14,13),(((((((18,15),(17,16)),19),((((22,23),((28,29),(27,26))),(24,25)),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 56 from search (criterion: minimize Tree value using character matrix)' = (4,(((1,2),3),(((((14,13),(((((((15,(17,16)),18),19),((((22,23),((28,29),(27,26))),(24,25)),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 57 from search (criterion: minimize Tree value using character matrix)' = ((1,(3,(4,(((((14,13),(((((((15,(17,16)),18),19),((((24,25),(22,23)),((28,29),(27,26))),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5))))),2)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 58 from search (criterion: minimize Tree value using character matrix)' = ((1,(3,(4,(((((14,13),(((((((18,15),(17,16)),19),((((22,23),((28,29),(27,26))),(24,25)),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5))))),2)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 59 from search (criterion: minimize Tree value using character matrix)' = (1,((3,(4,(((((14,13),(((((((15,(17,16)),18),19),((((24,25),(22,23)),((28,29),(27,26))),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5)))),2))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 60 from search (criterion: minimize Tree value using character matrix)' = (1,((3,(4,(((((14,13),(((((((18,15),(17,16)),19),((((22,23),((28,29),(27,26))),(24,25)),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5)))),2))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 61 from search (criterion: minimize Tree value using character matrix)' = ((3,(4,(((((14,13),(((((((15,(17,16)),18),19),((((22,23),((28,29),(27,26))),(24,25)),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5)))),(1,2))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 62 from search (criterion: minimize Tree value using character matrix)' = ((3,(1,(4,(((((14,13),(((((((15,(17,16)),18),19),((((24,25),(22,23)),((28,29),(27,26))),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5))))),2)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 63 from search (criterion: minimize Tree value using character matrix)' = ((3,(1,(4,(((((14,13),(((((((18,15),(17,16)),19),((((22,23),((28,29),(27,26))),(24,25)),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5))))),2)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 64 from search (criterion: minimize Tree value using character matrix)' = (3,((1,2),(4,(((((14,13),(((((((15,(17,16)),18),19),((((22,23),((28,29),(27,26))),(24,25)),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5)))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 65 from search (criterion: minimize Tree value using character matrix)' = (((2,3),(4,(((((14,13),(((((((15,(17,16)),18),19),((((22,23),((28,29),(27,26))),(24,25)),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5)))),1)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 66 from search (criterion: minimize Tree value using character matrix)' = ((2,(4,(3,(((((14,13),(((((((18,15),(17,16)),19),((((22,23),((28,29),(27,26))),(24,25)),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5))))),1)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 67 from search (criterion: minimize Tree value using character matrix)' = (((2,3),1),(4,(((((14,13),(((((((15,(17,16)),18),19),((((22,23),((28,29),(27,26))),(24,25)),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 68 from search (criterion: minimize Tree value using character matrix)' = ((2,3),(1,(4,(((((14,13),(((((((15,(17,16)),18),19),((((22,23),((28,29),(27,26))),(24,25)),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5)))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 69 from search (criterion: minimize Tree value using character matrix)' = (2,(1,(4,(3,(((((14,13),(((((((18,15),(17,16)),19),((((22,23),((28,29),(27,26))),(24,25)),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5))))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 70 from search (criterion: minimize Tree value using character matrix)' = (((1,(4,(((((14,13),(((((((15,(17,16)),18),19),((((22,23),((28,29),(27,26))),(24,25)),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5)))),2),3)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 71 from search (criterion: minimize Tree value using character matrix)' = (3,((4,(1,2)),(((((14,13),(((((((15,(17,16)),18),19),((((22,23),((28,29),(27,26))),(24,25)),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 72 from search (criterion: minimize Tree value using character matrix)' = ((1,2),(4,(3,(((((14,13),(((((((15,(17,16)),18),19),((((22,23),((28,29),(27,26))),(24,25)),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5)))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 73 from search (criterion: minimize Tree value using character matrix)' = ((((1,2),4),3),(((((14,13),(((((((15,(17,16)),18),19),((((22,23),((28,29),(27,26))),(24,25)),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 74 from search (criterion: minimize Tree value using character matrix)' = (((1,2),((((((14,13),(((((((15,(17,16)),18),19),((((22,23),((28,29),(27,26))),(24,25)),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(6,5)),3)),4)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 75 from search (criterion: minimize Tree value using character matrix)' = (3,((4,(1,2)),(((((14,13),((((((((18,15),(17,16)),19),((((22,23),((28,29),(27,26))),(24,25)),21)),20),(31,30)),6),(12,11))),(7,8)),(10,9)),5)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 76 from search (criterion: minimize Tree value using character matrix)' = ((1,2),(4,(3,(((((14,13),((((((((18,15),(17,16)),19),((((22,23),((28,29),(27,26))),(24,25)),21)),20),(31,30)),6),(12,11))),(7,8)),(10,9)),5))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 77 from search (criterion: minimize Tree value using character matrix)' = ((((((14,13),(((((((18,15),(17,16)),19),((((22,23),((28,29),(27,26))),(24,25)),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(((1,2),4),3)),(6,5))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 78 from search (criterion: minimize Tree value using character matrix)' = (((((14,13),(((((((18,15),(17,16)),19),((((22,23),((28,29),(27,26))),(24,25)),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),((((1,2),4),3),(6,5)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 79 from search (criterion: minimize Tree value using character matrix)' = ((((1,2),4),3),(((((14,13),((((((((18,15),(17,16)),19),((((22,23),((28,29),(27,26))),(24,25)),21)),20),(31,30)),6),(12,11))),(7,8)),(10,9)),5))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 80 from search (criterion: minimize Tree value using character matrix)' = (((1,2),((((((14,13),((((((((18,15),(17,16)),19),((((22,23),((28,29),(27,26))),(24,25)),21)),20),(31,30)),6),(12,11))),(7,8)),(10,9)),5),3)),4)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 81 from search (criterion: minimize Tree value using character matrix)' = ((6,(((((14,13),(((((((15,(17,16)),18),19),((((24,25),(22,23)),((28,29),(27,26))),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(4,((1,2),3)))),5)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 82 from search (criterion: minimize Tree value using character matrix)' = ((6,(((((14,13),(((((((18,15),(17,16)),19),((((22,23),((28,29),(27,26))),(24,25)),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(4,((1,2),3)))),5)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 83 from search (criterion: minimize Tree value using character matrix)' = ((6,(((((14,13),(((((((18,15),(17,16)),19),((((24,25),(22,23)),((28,29),(27,26))),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(4,(1,(2,3))))),5)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 84 from search (criterion: minimize Tree value using character matrix)' = (6,((((((14,13),(((((((15,(17,16)),18),19),((((24,25),(22,23)),((28,29),(27,26))),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(4,((1,2),3))),5))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 85 from search (criterion: minimize Tree value using character matrix)' = (6,((((((14,13),(((((((18,15),(17,16)),19),((((22,23),((28,29),(27,26))),(24,25)),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(4,((1,2),3))),5))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 86 from search (criterion: minimize Tree value using character matrix)' = (6,((((((14,13),(((((((18,15),(17,16)),19),((((24,25),(22,23)),((28,29),(27,26))),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(4,(1,(2,3)))),5))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 87 from search (criterion: minimize Tree value using character matrix)' = ((((((14,13),(((((((15,(17,16)),18),19),((((22,23),((28,29),(27,26))),(24,25)),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(4,((1,2),3))),(6,5))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 88 from search (criterion: minimize Tree value using character matrix)' = ((((((14,13),(((((((15,(17,16)),18),19),((((24,25),(22,23)),((28,29),(27,26))),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(4,(1,(2,3)))),(6,5))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 89 from search (criterion: minimize Tree value using character matrix)' = ((((((14,13),(((((((18,15),(17,16)),19),((((22,23),((28,29),(27,26))),(24,25)),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),(4,(1,(2,3)))),(6,5))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 90 from search (criterion: minimize Tree value using character matrix)' = ((((14,13),(((((((18,15),(17,16)),19),((((24,25),(22,23)),((28,29),(27,26))),21)),20),(31,30)),(12,11))),((10,9),((4,((1,2),3)),(6,5)))),(7,8))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 91 from search (criterion: minimize Tree value using character matrix)' = (((14,13),(((((((18,15),(17,16)),19),((((24,25),(22,23)),((28,29),(27,26))),21)),20),(31,30)),(12,11))),(((10,9),((4,((1,2),3)),(6,5))),(7,8)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 92 from search (criterion: minimize Tree value using character matrix)' = (((10,9),((4,(1,(2,3))),(6,5))),(((14,13),(((((((18,15),(17,16)),19),((((24,25),(22,23)),((28,29),(27,26))),21)),20),(31,30)),(12,11))),(7,8)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 93 from search (criterion: minimize Tree value using character matrix)' = (((10,9),((4,((1,2),3)),(6,5))),(((14,13),(((((((15,(17,16)),18),19),((((24,25),(22,23)),((28,29),(27,26))),21)),20),(31,30)),(12,11))),(7,8)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 94 from search (criterion: minimize Tree value using character matrix)' = (((10,9),((4,((1,2),3)),(6,5))),(((14,13),(((((((18,15),(17,16)),19),((((22,23),((28,29),(27,26))),(24,25)),21)),20),(31,30)),(12,11))),(7,8)))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 95 from search (criterion: minimize Tree value using character matrix)' = ((9,((((14,13),(((((((18,15),(17,16)),19),((((24,25),(22,23)),((28,29),(27,26))),21)),20),(31,30)),(12,11))),(7,8)),((4,((1,2),3)),(6,5)))),10)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 96 from search (criterion: minimize Tree value using character matrix)' = (9,(10,((((14,13),(((((((18,15),(17,16)),19),((((24,25),(22,23)),((28,29),(27,26))),21)),20),(31,30)),(12,11))),(7,8)),((4,((1,2),3)),(6,5)))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 97 from search (criterion: minimize Tree value using character matrix)' = ((10,9),((((14,13),(((((((15,(17,16)),18),19),((((24,25),(22,23)),((28,29),(27,26))),21)),20),(31,30)),(12,11))),(7,8)),((4,((1,2),3)),(6,5))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 98 from search (criterion: minimize Tree value using character matrix)' = ((10,9),((((14,13),(((((((18,15),(17,16)),19),((((22,23),((28,29),(27,26))),(24,25)),21)),20),(31,30)),(12,11))),(7,8)),((4,((1,2),3)),(6,5))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 99 from search (criterion: minimize Tree value using character matrix)' = ((10,9),((((14,13),(((((((18,15),(17,16)),19),((((24,25),(22,23)),((28,29),(27,26))),21)),20),(31,30)),(12,11))),(7,8)),((4,(1,(2,3))),(6,5))))[% ] [% ] [% setBetweenBits = selected ]; TREE 'Tree 100 from search (criterion: minimize Tree value using character matrix)' = (((((14,13),(((((((15,(17,16)),18),19),((((22,23),((28,29),(27,26))),(24,25)),21)),20),(31,30)),(12,11))),(7,8)),(10,9)),((4,((1,2),3)),(6,5)))[% ] [% ] [% setBetweenBits = selected ]; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1523864332122; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 6482070574310052618; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 7011470889332090230; mqVersion 340; checksumv 0 3 2820845509 null getNumChars 229 numChars 229 getNumTaxa 31 numTaxa 31 short false bits 1048575 states 1048575 sumSquaresStatesOnly 3.9337770344019E13 sumSquares 3.9337770344019E13 longCompressibleToShort false usingShortMatrix false NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 201; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1920 962; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #6482070574310052618 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 0162cd5a42e71; toggleUseWeights off; endTell; setAssignedID 1107.1523864122432.6749364259082369075; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1719 890; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; toggleShow consensusFrequency; toggleShow bootstrapFrequency; toggleShow posteriorProbability; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; setDigits 4; setThreshold ?; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #7011470889332090230 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1719 890; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 16 6 1 1; subCosts 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;